nixpkgs mirror (for testing)
github.com/NixOS/nixpkgs
nix
1{
2 "extraArgs": {
3 "biocVersion": "3.22"
4 },
5 "packages": {
6 "ABSSeq": {
7 "name": "ABSSeq",
8 "version": "1.64.0",
9 "sha256": "0cvq7n71i784agdyl2l4fxmla5sd04nqb6z35pc8k0lqh6319bh4",
10 "depends": ["limma", "locfit"]
11 },
12 "ABarray": {
13 "name": "ABarray",
14 "version": "1.78.0",
15 "sha256": "0y8hf8ziyh4v5q47ysbrld402z4vwd5dgkh21fvrq13r99vx4fpx",
16 "depends": ["Biobase", "multtest"]
17 },
18 "ACE": {
19 "name": "ACE",
20 "version": "1.28.0",
21 "sha256": "09bcqwkxswn8zxnp66xbqv8p71z8fdnipr1v1cfn4m64q9jjjir5",
22 "depends": ["Biobase", "GenomicRanges", "QDNAseq", "ggplot2"]
23 },
24 "ACME": {
25 "name": "ACME",
26 "version": "2.66.0",
27 "sha256": "0fklsn5clzni4fsnipgkkikbr09fiwlkrsf3gqnyzl1kwwlwxiy2",
28 "depends": ["Biobase", "BiocGenerics"]
29 },
30 "ADAM": {
31 "name": "ADAM",
32 "version": "1.26.0",
33 "sha256": "12s2dlfnkg13jgh8dppcjk5sfhw88c63iqzmf9c4sb5q9i2ydy8x",
34 "depends": ["DT", "GO_db", "KEGGREST", "Rcpp", "SummarizedExperiment", "dplyr", "knitr", "pbapply", "stringr"]
35 },
36 "ADAMgui": {
37 "name": "ADAMgui",
38 "version": "1.26.0",
39 "sha256": "1gn460fdbcdngzjq4llyq08fzgaqds6msvya8967cz5c6cg70f7j",
40 "depends": ["ADAM", "DT", "GO_db", "RColorBrewer", "colorRamps", "data_table", "dplyr", "ggplot2", "ggpubr", "ggrepel", "ggsignif", "gridExtra", "knitr", "reshape2", "shiny", "shinyjs", "stringi", "stringr", "testthat", "varhandle"]
41 },
42 "ADAPT": {
43 "name": "ADAPT",
44 "version": "1.4.0",
45 "sha256": "1v0lypbv1bhxphd071rn3b8kyvfn088nx78fg3kadlgc0y5xvli5",
46 "depends": ["Rcpp", "RcppArmadillo", "RcppParallel", "ggplot2", "ggrepel", "phyloseq"]
47 },
48 "ADImpute": {
49 "name": "ADImpute",
50 "version": "1.20.0",
51 "sha256": "1dnw40hnrjyd3bbb1ylw0fy8lcc6irswd80px69p8c7kmwp2yfp1",
52 "depends": ["BiocParallel", "DrImpute", "MASS", "Matrix", "S4Vectors", "SAVER", "SingleCellExperiment", "SummarizedExperiment", "checkmate", "data_table", "kernlab", "rsvd"]
53 },
54 "ADaCGH2": {
55 "name": "ADaCGH2",
56 "version": "2.50.0",
57 "sha256": "12p0fffq1aa8mnibjwg10b7f4bhr9brg6jniz9amzr5hink5xvy6",
58 "depends": ["DNAcopy", "aCGH", "bit", "cluster", "ff", "tilingArray", "waveslim"]
59 },
60 "AGDEX": {
61 "name": "AGDEX",
62 "version": "1.58.0",
63 "sha256": "0xwlm7nay7ns5nnvi6zrl2ygrbkj6lq14yph6rasy08cdjll74l2",
64 "depends": ["Biobase", "GSEABase"]
65 },
66 "AHMassBank": {
67 "name": "AHMassBank",
68 "version": "1.10.0",
69 "sha256": "1kx70njam0b05ind94r55dm99a5b2x01akipvz7q9bhqrcl0qbq7",
70 "depends": ["AnnotationHubData"]
71 },
72 "AIMS": {
73 "name": "AIMS",
74 "version": "1.42.0",
75 "sha256": "0y0shffhx5axm14m0wwns7x2aydzwhwd1x28an2c3y34x03bp98x",
76 "depends": ["Biobase", "e1071"]
77 },
78 "ALDEx2": {
79 "name": "ALDEx2",
80 "version": "1.42.0",
81 "sha256": "0ajpmb60yyc6z6w8vjy6anxla4cih6229a5d8q0g279s2pg6s8lr",
82 "depends": ["BiocParallel", "GenomicRanges", "IRanges", "Rfast", "S4Vectors", "SummarizedExperiment", "directlabels", "lattice", "latticeExtra", "multtest", "zCompositions"]
83 },
84 "AMARETTO": {
85 "name": "AMARETTO",
86 "version": "1.26.0",
87 "sha256": "1ynzmipszc22d1zcw4w4lslcvdappw12c1csckqz94bibfgngjmq",
88 "depends": ["BiocFileCache", "ComplexHeatmap", "DT", "Matrix", "MultiAssayExperiment", "Rcpp", "callr", "circlize", "curatedTCGAData", "doParallel", "dplyr", "foreach", "ggplot2", "glmnet", "gridExtra", "httr", "impute", "knitr", "limma", "matrixStats", "readr", "reshape2", "rmarkdown", "tibble"]
89 },
90 "AMOUNTAIN": {
91 "name": "AMOUNTAIN",
92 "version": "1.36.0",
93 "sha256": "14xmkjysv3ydhqvzc43ld5kl8rl2j08dyykmh4jvi78lm4lwgifs",
94 "depends": []
95 },
96 "ANCOMBC": {
97 "name": "ANCOMBC",
98 "version": "2.12.0",
99 "sha256": "1pba6ls61184dx8dyf2lfxcabpnj3av5s60w86104addygnj9y78",
100 "depends": ["CVXR", "DescTools", "Hmisc", "MASS", "Matrix", "Rdpack", "doParallel", "doRNG", "energy", "foreach", "gtools", "lme4", "lmerTest", "multcomp", "nloptr"]
101 },
102 "ANF": {
103 "name": "ANF",
104 "version": "1.32.0",
105 "sha256": "1l69zjldgvih834k09hfx1lrhj634harva38h983y4cwl58hv4xj",
106 "depends": ["Biobase", "MASS", "RColorBrewer", "igraph", "survival"]
107 },
108 "APL": {
109 "name": "APL",
110 "version": "1.14.0",
111 "sha256": "0xdj7hwaw3mxqwyv8hd8j37ri4f49ldmv3n4d23n0wm62rrf8igs",
112 "depends": ["Matrix", "RSpectra", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "ggrepel", "magrittr", "org_Hs_eg_db", "org_Mm_eg_db", "plotly", "rlang", "topGO", "viridisLite"]
113 },
114 "ARRmNormalization": {
115 "name": "ARRmNormalization",
116 "version": "1.50.0",
117 "sha256": "0gv4gzva7m77d97aczr44g9xirscwqnib7v9wsld9dd0dsall8mj",
118 "depends": ["ARRmData"]
119 },
120 "ASAFE": {
121 "name": "ASAFE",
122 "version": "1.36.0",
123 "sha256": "01rdnc6v41ql4bfx4xv23sz67lqm6pgphfd1dskl0rvqnlf8z89p",
124 "depends": []
125 },
126 "ASEB": {
127 "name": "ASEB",
128 "version": "1.54.0",
129 "sha256": "03w1pxqyfj92x0bfnxpi9jvshz6vhkp9fgjb0gl8ry1cs7n0n11d",
130 "depends": []
131 },
132 "ASGSCA": {
133 "name": "ASGSCA",
134 "version": "1.44.0",
135 "sha256": "1c1172y40jd1apx3vv2mjnhiw87rgv1fhlmnqz7wqkvjil71ial2",
136 "depends": ["MASS", "Matrix"]
137 },
138 "ASICS": {
139 "name": "ASICS",
140 "version": "2.26.0",
141 "sha256": "01xhk2i13hcbmjy92bxpprn19q64xsqk31f9f7q91rdk4iii0ckd",
142 "depends": ["BiocParallel", "Matrix", "PepsNMR", "SummarizedExperiment", "ggplot2", "glmnet", "gridExtra", "mvtnorm", "plyr", "quadprog", "ropls", "zoo"]
143 },
144 "ASSET": {
145 "name": "ASSET",
146 "version": "2.28.0",
147 "sha256": "0mg1mmj2wlrwl668vkkxycr5ymzhcai78vvq49hnrrkhnb79wx7h",
148 "depends": ["MASS", "msm", "rmeta"]
149 },
150 "ASSIGN": {
151 "name": "ASSIGN",
152 "version": "1.46.0",
153 "sha256": "1k38y9nwayrbd0icfqqw2qcpk76g7ycybfnjqfyic6vcgn7yhfr9",
154 "depends": ["Rlab", "ggplot2", "gplots", "msm", "sva", "yaml"]
155 },
156 "ASURAT": {
157 "name": "ASURAT",
158 "version": "1.14.0",
159 "sha256": "18bb6hx01v1jz4jy0lzr0g0xa269j9jvz8li3wfbfdrnnp0l3cj6",
160 "depends": ["ComplexHeatmap", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "circlize", "cluster", "plot3D"]
161 },
162 "ASpli": {
163 "name": "ASpli",
164 "version": "2.20.0",
165 "sha256": "16m8v29f22bwlbz1v5fxhg8rmp2wxaxr9ywl35hpi9jzgbmgpcz5",
166 "depends": ["AnnotationDbi", "BiocGenerics", "BiocStyle", "DT", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "MASS", "Rsamtools", "S4Vectors", "UpSetR", "data_table", "edgeR", "htmltools", "igraph", "limma", "pbmcapply", "tidyr", "txdbmaker"]
167 },
168 "ATACseqQC": {
169 "name": "ATACseqQC",
170 "version": "1.34.0",
171 "sha256": "0yb69k9cl1ibf8v0jmmzij7l6iz85gf4dyz7yli1b72yf765q5y0",
172 "depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "ChIPpeakAnno", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "GenomicScores", "IRanges", "KernSmooth", "Rsamtools", "S4Vectors", "edgeR", "limma", "motifStack", "preseqR", "randomForest", "rtracklayer"]
173 },
174 "ATACseqTFEA": {
175 "name": "ATACseqTFEA",
176 "version": "1.12.0",
177 "sha256": "1zlwbx1pvq5wfxvm94mgdwvy8k53n74bjgzbpp6p34zy5v1cga5r",
178 "depends": ["BiocGenerics", "GenomicAlignments", "GenomicRanges", "IRanges", "Matrix", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TFBSTools", "dplyr", "ggplot2", "ggrepel", "limma", "motifmatchr", "pracma", "rtracklayer"]
179 },
180 "AUCell": {
181 "name": "AUCell",
182 "version": "1.32.0",
183 "sha256": "1qpdvia2qlq0w477xdia05alfmmnwf0ix2f7ib9hn593fzrp1py7",
184 "depends": ["BiocGenerics", "DelayedArray", "DelayedMatrixStats", "GSEABase", "Matrix", "R_utils", "SummarizedExperiment", "data_table", "mixtools"]
185 },
186 "AWAggregator": {
187 "name": "AWAggregator",
188 "version": "1.0.0",
189 "sha256": "06czqk7n4gcxw27qzsia6vnibm2mbd1g1315kxgxnivxh9sjsn0k",
190 "depends": ["Peptides", "dplyr", "progress", "purrr", "ranger", "rlang", "stringr", "tidyr", "toOrdinal"]
191 },
192 "AWFisher": {
193 "name": "AWFisher",
194 "version": "1.24.0",
195 "sha256": "1gllng75bk3iiwrv3r4fphhnx90xk88jll00zja2akxxn0nka2g5",
196 "depends": ["edgeR", "limma"]
197 },
198 "AffiXcan": {
199 "name": "AffiXcan",
200 "version": "1.28.0",
201 "sha256": "1smbwpp1iqlch3135rkah68bnfh54849yhy8mwj0845i9y9rdqk9",
202 "depends": ["BiocParallel", "MultiAssayExperiment", "SummarizedExperiment", "crayon"]
203 },
204 "AffyRNADegradation": {
205 "name": "AffyRNADegradation",
206 "version": "1.56.0",
207 "sha256": "11isb0is2l9yccgr61asbf5kyckv2hp64axwv7ncvzrq6gn6zqy6",
208 "depends": ["affy"]
209 },
210 "AgiMicroRna": {
211 "name": "AgiMicroRna",
212 "version": "2.60.0",
213 "sha256": "0an7hfccdcxcsshafihhib77x96f5a0lny28zdnsi31dx41mmpvh",
214 "depends": ["Biobase", "affy", "affycoretools", "limma", "preprocessCore"]
215 },
216 "AllelicImbalance": {
217 "name": "AllelicImbalance",
218 "version": "1.48.0",
219 "sha256": "0g4gv0h69cld903nb0sr58vc7vsbkr62p19m7fjfhv0crmkr960s",
220 "depends": ["AnnotationDbi", "BSgenome", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "Rsamtools", "S4Vectors", "SummarizedExperiment", "VariantAnnotation", "gridExtra", "lattice", "latticeExtra", "nlme", "seqinr"]
221 },
222 "AlphaBeta": {
223 "name": "AlphaBeta",
224 "version": "1.24.0",
225 "sha256": "0s550vmcsnm2ih1vajyah8kqvk7y4bgyrwm1fddzvqsizn3w61x1",
226 "depends": ["BiocParallel", "data_table", "dplyr", "expm", "ggplot2", "gtools", "igraph", "optimx", "plotly", "stringr"]
227 },
228 "AlphaMissenseR": {
229 "name": "AlphaMissenseR",
230 "version": "1.6.0",
231 "sha256": "1d36bav4fn5dmay9c9czb19b15yx0lvh13l2h6irw15i0q38480a",
232 "depends": ["BiocBaseUtils", "BiocFileCache", "DBI", "curl", "dplyr", "duckdb", "ggplot2", "memoise", "rjsoncons", "rlang", "spdl", "whisker"]
233 },
234 "AlpsNMR": {
235 "name": "AlpsNMR",
236 "version": "4.12.0",
237 "sha256": "0bfx721f9bx22xls65d1ygdkwbh1xadnff6nw29gyk7yic62nwik",
238 "depends": ["BiocParallel", "baseline", "cli", "dplyr", "fs", "generics", "ggplot2", "glue", "htmltools", "magrittr", "matrixStats", "mixOmics", "pcaPP", "purrr", "readxl", "reshape2", "rlang", "rmarkdown", "scales", "signal", "speaq", "stringr", "tibble", "tidyr", "tidyselect", "vctrs"]
239 },
240 "AnVIL": {
241 "name": "AnVIL",
242 "version": "1.22.0",
243 "sha256": "08r41q8zb72kbfslw851152h4k2q7jzkk0d85d6rmvdd3r1qd9bw",
244 "depends": ["AnVILBase", "BiocBaseUtils", "DT", "GCPtools", "dplyr", "futile_logger", "htmltools", "httr", "jsonlite", "miniUI", "rapiclient", "shiny", "tibble", "yaml"]
245 },
246 "AnVILAz": {
247 "name": "AnVILAz",
248 "version": "1.4.0",
249 "sha256": "0hzmqbqrak5b0y3872mcddd3568dmxi9456qv8svsjqp2bg4941v",
250 "depends": ["AnVILBase", "BiocBaseUtils", "curl", "httr2", "jsonlite", "rjsoncons", "tibble"]
251 },
252 "AnVILBase": {
253 "name": "AnVILBase",
254 "version": "1.4.0",
255 "sha256": "12bv85l363a6zy3jmsp2rqcyhha5slqmalyyc9dzxyk6s47qg9rh",
256 "depends": ["dplyr", "httr", "httr2", "jsonlite", "tibble"]
257 },
258 "AnVILBilling": {
259 "name": "AnVILBilling",
260 "version": "1.20.0",
261 "sha256": "0w8j6wgpi614mqs850x20c1pwi4za11gyyjnlsms22b5dv0vnsqp",
262 "depends": ["DBI", "DT", "bigrquery", "dplyr", "ggplot2", "lubridate", "magrittr", "plotly", "shiny", "shinytoastr"]
263 },
264 "AnVILGCP": {
265 "name": "AnVILGCP",
266 "version": "1.4.0",
267 "sha256": "151gklrnpwdj3mdlxn71q4nh01xxl76xqljmk551dqyzpi9qic8i",
268 "depends": ["AnVILBase", "BiocBaseUtils", "GCPtools", "dplyr", "httr", "jsonlite", "rlang", "tibble", "tidyr"]
269 },
270 "AnVILPublish": {
271 "name": "AnVILPublish",
272 "version": "1.20.0",
273 "sha256": "1x60vfhs9w60kc3ibgc7f6hzzfzzgq40g186zvwwa7fbkm44yhiw",
274 "depends": ["AnVIL", "AnVILGCP", "BiocBaseUtils", "BiocManager", "httr", "jsonlite", "readr", "rmarkdown", "whisker", "yaml"]
275 },
276 "AnVILWorkflow": {
277 "name": "AnVILWorkflow",
278 "version": "1.10.0",
279 "sha256": "1i7pia3hgr4is23vyligxbkr3a8qr935w4nx2z5ig645k4wk9q0g",
280 "depends": ["AnVIL", "AnVILBase", "AnVILGCP", "dplyr", "httr", "jsonlite", "plyr", "rlang", "stringr", "tibble", "tidyr"]
281 },
282 "Anaquin": {
283 "name": "Anaquin",
284 "version": "2.34.0",
285 "sha256": "159hipdjikaflrpz79xsvx8ks97c7r8ibnzhj90vya3jf2vfvaq3",
286 "depends": ["DESeq2", "ROCR", "ggplot2", "knitr", "locfit", "plyr", "qvalue"]
287 },
288 "AnnotationDbi": {
289 "name": "AnnotationDbi",
290 "version": "1.72.0",
291 "sha256": "0vzrkx8x060281zmk13k8ajrfl8g6sx361563yw4aymvjdrdax37",
292 "depends": ["Biobase", "BiocGenerics", "DBI", "IRanges", "KEGGREST", "RSQLite", "S4Vectors"]
293 },
294 "AnnotationFilter": {
295 "name": "AnnotationFilter",
296 "version": "1.34.0",
297 "sha256": "1p8m3kx6il3g1pfc3d7kxqvpdr1dpalscp7pav03a1v3x7199gn5",
298 "depends": ["GenomicRanges", "lazyeval"]
299 },
300 "AnnotationForge": {
301 "name": "AnnotationForge",
302 "version": "1.52.0",
303 "sha256": "0idd80w57yd4gxv5k15mzwmny18bsv2aphx7zkk250nbhj9qb7l7",
304 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DBI", "RCurl", "RSQLite", "S4Vectors", "XML"]
305 },
306 "AnnotationHub": {
307 "name": "AnnotationHub",
308 "version": "4.0.0",
309 "sha256": "1im0k4ajrpvmvlyi0v76x93mzwq77nq9mx1rwq3x7xfr5hz6r21f",
310 "depends": ["AnnotationDbi", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocManager", "BiocVersion", "RSQLite", "S4Vectors", "curl", "dplyr", "httr2", "rappdirs", "yaml"]
311 },
312 "AnnotationHubData": {
313 "name": "AnnotationHubData",
314 "version": "1.40.0",
315 "sha256": "1ix1mnl0ai16160rfghcn6apckdicm2hnafch8b0yf50iz5sg5fk",
316 "depends": ["AnnotationDbi", "AnnotationForge", "AnnotationHub", "Biobase", "BiocCheck", "BiocGenerics", "BiocManager", "Biostrings", "DBI", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "OrganismDbi", "RCurl", "RSQLite", "Rsamtools", "S4Vectors", "Seqinfo", "XML", "biocViews", "futile_logger", "graph", "jsonlite", "rtracklayer"]
317 },
318 "ArrayExpress": {
319 "name": "ArrayExpress",
320 "version": "1.70.0",
321 "sha256": "1f7ai8ljy6ssbk21fl2f565v988ry12k5x7ima73z0a378zq8dyb",
322 "depends": ["Biobase", "httr", "jsonlite", "limma", "oligo", "rlang"]
323 },
324 "AssessORF": {
325 "name": "AssessORF",
326 "version": "1.28.0",
327 "sha256": "16020ypgrahjcmfw46lniqabb6c0bghsw6vznxxm98bakcqv0qlz",
328 "depends": ["Biostrings", "DECIPHER", "GenomicRanges", "IRanges"]
329 },
330 "BADER": {
331 "name": "BADER",
332 "version": "1.48.0",
333 "sha256": "1kxdwxr5hfdgky2083jp1cy79qilv1lb3l1ccpx0y0khf8104nld",
334 "depends": []
335 },
336 "BAGS": {
337 "name": "BAGS",
338 "version": "2.50.0",
339 "sha256": "0813s292xszlw4r8xy0hnm0jkawz6l7cafv2xsa7k005lzm6dhbx",
340 "depends": ["Biobase", "breastCancerVDX"]
341 },
342 "BANDITS": {
343 "name": "BANDITS",
344 "version": "1.26.0",
345 "sha256": "0ygh1sgnxsqvz9k79sp29nc1rvm4cfp7g1fxy0hiis9p6lznz88m",
346 "depends": ["BiocParallel", "DRIMSeq", "MASS", "R_utils", "Rcpp", "RcppArmadillo", "data_table", "doParallel", "doRNG", "foreach", "ggplot2"]
347 },
348 "BASiCS": {
349 "name": "BASiCS",
350 "version": "2.22.0",
351 "sha256": "04z4dphnxvphhngxqd7zcv5072s424m08vdsk7aqiyv7zd63jacz",
352 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "MASS", "Matrix", "Rcpp", "RcppArmadillo", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "assertthat", "coda", "cowplot", "ggExtra", "ggplot2", "hexbin", "matrixStats", "posterior", "reshape2", "scran", "scuttle", "viridis"]
353 },
354 "BASiCStan": {
355 "name": "BASiCStan",
356 "version": "1.12.0",
357 "sha256": "05iinqlg0jfsc1fs2sdbxkyizh04myspp9fax4jimpwys0svp8im",
358 "depends": ["BASiCS", "BH", "Rcpp", "RcppEigen", "RcppParallel", "SingleCellExperiment", "StanHeaders", "SummarizedExperiment", "glmGamPoi", "rstan", "rstantools", "scran", "scuttle"]
359 },
360 "BBCAnalyzer": {
361 "name": "BBCAnalyzer",
362 "version": "1.40.0",
363 "sha256": "0dsfj212y0gh2njch10hrzhdl63h12qkhky2n3slq3kp0qzvi5gk",
364 "depends": ["Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "SummarizedExperiment", "VariantAnnotation"]
365 },
366 "BCRANK": {
367 "name": "BCRANK",
368 "version": "1.72.0",
369 "sha256": "0snryc43qkhcgaaymdxrfviyg700zvq32s7y3pl649l4qnvr0y4p",
370 "depends": ["Biostrings"]
371 },
372 "BEAT": {
373 "name": "BEAT",
374 "version": "1.48.0",
375 "sha256": "0d7jmn0w9yj09b14ylfsfqqivqkx55agmc1wk20cnrcisypfmi24",
376 "depends": ["BSgenome", "Biostrings", "GenomicRanges", "ShortRead"]
377 },
378 "BERT": {
379 "name": "BERT",
380 "version": "1.6.0",
381 "sha256": "0dif7q6cg6pz56yvwwg1zghv7n9b8gk0wc4j8lxpx1pn16pslqpl",
382 "depends": ["BiocParallel", "SummarizedExperiment", "cluster", "comprehenr", "foreach", "invgamma", "iterators", "janitor", "limma", "logging", "sva"]
383 },
384 "BEclear": {
385 "name": "BEclear",
386 "version": "2.26.0",
387 "sha256": "08q3hzyrbx3b34dgjh21q0wvz7489y7y0d3z3syg76hpgsmbqa61",
388 "depends": ["BiocParallel", "Matrix", "Rcpp", "Rdpack", "abind", "data_table", "dixonTest", "futile_logger", "ids"]
389 },
390 "BG2": {
391 "name": "BG2",
392 "version": "1.10.0",
393 "sha256": "1h4i0bavsqlhgqjz1j6ihaz3247gg7d2n9gv6ssmqsrmgfr1kfcd",
394 "depends": ["GA", "MASS", "Matrix", "caret", "memoise"]
395 },
396 "BLMA": {
397 "name": "BLMA",
398 "version": "1.34.0",
399 "sha256": "1r5bxljaqvx145k78n3q1mrjksfjbyng63wsn9y8xwcjiwfzj84j",
400 "depends": ["Biobase", "GSA", "PADOG", "ROntoTools", "graph", "limma", "metafor"]
401 },
402 "BOBaFIT": {
403 "name": "BOBaFIT",
404 "version": "1.14.0",
405 "sha256": "0whrk2s02kisrq2f884vw72g5m7z27xb12498l7rr30hynxy0vsw",
406 "depends": ["GenomicRanges", "NbClust", "dplyr", "ggbio", "ggforce", "ggplot2", "magrittr", "plyranges", "stringr", "tidyr"]
407 },
408 "BRAIN": {
409 "name": "BRAIN",
410 "version": "1.56.0",
411 "sha256": "1dimjgbl3rzqgbqq1c2s7ksv3f6hi8ghpgrhv6brnp7b04mjzbxc",
412 "depends": ["Biostrings", "PolynomF", "lattice"]
413 },
414 "BREW3R_r": {
415 "name": "BREW3R.r",
416 "version": "1.6.0",
417 "sha256": "143c7kpn6k2ayj8h0n1jwd7kw4ss44x73sk7ja5k03j2n257yya4",
418 "depends": ["GenomicRanges", "S4Vectors", "rlang"]
419 },
420 "BSgenome": {
421 "name": "BSgenome",
422 "version": "1.78.0",
423 "sha256": "05j4nd6n7g0a5jprn2sq2ki0fwzca4hj850gazr3xh6a461ggjgi",
424 "depends": ["BiocGenerics", "BiocIO", "Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "XVector", "matrixStats", "rtracklayer"]
425 },
426 "BSgenomeForge": {
427 "name": "BSgenomeForge",
428 "version": "1.10.0",
429 "sha256": "0g3wh1i29j5kkf9v1apgix8268ylmn8yhksibwkkpnhvwz9c2dj7",
430 "depends": ["BSgenome", "Biobase", "BiocGenerics", "BiocIO", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "rtracklayer"]
431 },
432 "BUMHMM": {
433 "name": "BUMHMM",
434 "version": "1.34.0",
435 "sha256": "018p00njamj3dicbky2mpq944wlnc1p6mjmprndl3118zcxpv2i1",
436 "depends": ["Biostrings", "IRanges", "SummarizedExperiment", "devtools", "gtools", "stringi"]
437 },
438 "BUS": {
439 "name": "BUS",
440 "version": "1.66.0",
441 "sha256": "0nmqym06q9v6cvfw5yi0fv623q1j8xsfkwsk0pbx1dazcav9b2mp",
442 "depends": ["infotheo", "minet"]
443 },
444 "BUScorrect": {
445 "name": "BUScorrect",
446 "version": "1.28.0",
447 "sha256": "1j46hlzay56mpj1pr4vcgq89j7q0pyx20kj6ymhpxqmhf2ax9077",
448 "depends": ["SummarizedExperiment", "gplots"]
449 },
450 "BUSpaRse": {
451 "name": "BUSpaRse",
452 "version": "1.24.0",
453 "sha256": "0907sj9icf5ywn6rbcrk37wpp8njiyyxq5fkq76wzzj5v6m96n75",
454 "depends": ["AnnotationDbi", "AnnotationFilter", "AnnotationHub", "BH", "BSgenome", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "RcppArmadillo", "RcppProgress", "S4Vectors", "biomaRt", "dplyr", "ensembldb", "ggplot2", "lifecycle", "magrittr", "plyranges", "stringr", "tibble", "tidyr", "zeallot"]
455 },
456 "BUSseq": {
457 "name": "BUSseq",
458 "version": "1.16.0",
459 "sha256": "0iw84pf59zf39ldbibl4qxyjvn9id86xrnvalryvs1mpjdazyjb2",
460 "depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "gplots"]
461 },
462 "BaalChIP": {
463 "name": "BaalChIP",
464 "version": "1.36.0",
465 "sha256": "0zi2b93jrcv5y7462f2bcdp768pik78n5nxwwrd3y5w46j8k7l7k",
466 "depends": ["GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "coda", "doBy", "doParallel", "foreach", "ggplot2", "reshape2", "scales"]
467 },
468 "BadRegionFinder": {
469 "name": "BadRegionFinder",
470 "version": "1.38.0",
471 "sha256": "0413bc39r666dwgyhskdllvyqfvxvh2hna535mnjm1326wprhvcz",
472 "depends": ["GenomicRanges", "Rsamtools", "S4Vectors", "VariantAnnotation", "biomaRt"]
473 },
474 "Banksy": {
475 "name": "Banksy",
476 "version": "1.6.0",
477 "sha256": "02bhdxckryvnilq7hsbngy6g251cnjg4j9d7wg4m3gkrcsrbjwim",
478 "depends": ["BiocParallel", "GenomeInfoDb", "Matrix", "MatrixGenerics", "RcppHungarian", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "aricode", "data_table", "dbscan", "igraph", "irlba", "leidenAlg", "mclust", "uwot"]
479 },
480 "BaseSpaceR": {
481 "name": "BaseSpaceR",
482 "version": "1.54.0",
483 "sha256": "0dyv8abr34jhig7xb7z7gghb0nnqaflwqshqbls08layz5wh4p21",
484 "depends": ["RCurl", "RJSONIO"]
485 },
486 "Basic4Cseq": {
487 "name": "Basic4Cseq",
488 "version": "1.46.0",
489 "sha256": "1jjmsn2dryvkyisbw4jwq8df162wkmcr7kiqn8jwz9g4gzi8lb6b",
490 "depends": ["BSgenome_Ecoli_NCBI_20080805", "Biostrings", "GenomicAlignments", "GenomicRanges", "RCircos", "caTools"]
491 },
492 "BasicSTARRseq": {
493 "name": "BasicSTARRseq",
494 "version": "1.38.0",
495 "sha256": "06yxawx34bfr1112kkrd1g7n27qfxrnxq699ap18469vxypz2dw8",
496 "depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo"]
497 },
498 "BatchQC": {
499 "name": "BatchQC",
500 "version": "2.6.0",
501 "sha256": "12igzinwk2lkxkrsbxpm59jqizw0walvr7xrhhl18hjjfalff7ji",
502 "depends": ["DESeq2", "EBSeq", "FNN", "MASS", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "data_table", "dplyr", "edgeR", "ggdendro", "ggnewscale", "ggplot2", "limma", "matrixStats", "pheatmap", "reader", "reshape2", "scran", "shiny", "shinyjs", "shinythemes", "sva", "tibble", "tidyr", "tidyverse", "umap"]
503 },
504 "BatchSVG": {
505 "name": "BatchSVG",
506 "version": "1.2.0",
507 "sha256": "005dk3aijcm881fdy35mqhrchh34i057c3x9n168g4lp3h4k036r",
508 "depends": ["RColorBrewer", "SummarizedExperiment", "cowplot", "dplyr", "ggplot2", "ggrepel", "rlang", "scales", "scry"]
509 },
510 "BayesKnockdown": {
511 "name": "BayesKnockdown",
512 "version": "1.36.0",
513 "sha256": "1a69cywgxsfylm4nvidllqnh9pgkps7lw15c62zpbh9jk041fxad",
514 "depends": ["Biobase"]
515 },
516 "BayesSpace": {
517 "name": "BayesSpace",
518 "version": "1.20.0",
519 "sha256": "1mqa0f08ynpplvg7ni8alk0a9w4yy876jslzx3p1kmyb8ncb4zaj",
520 "depends": ["BiocFileCache", "BiocParallel", "BiocSingular", "DirichletReg", "Matrix", "RCurl", "Rcpp", "RcppArmadillo", "RcppDist", "RcppProgress", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "arrow", "assertthat", "coda", "dplyr", "ggplot2", "magrittr", "mclust", "microbenchmark", "purrr", "rhdf5", "rjson", "rlang", "scales", "scater", "scran", "tibble", "tidyr", "xgboost"]
521 },
522 "BeadDataPackR": {
523 "name": "BeadDataPackR",
524 "version": "1.62.0",
525 "sha256": "0dl1clwaccv0s7g5ka27wrb74yw8pm1sy12ax4fkpmdbyka7ca19",
526 "depends": []
527 },
528 "BgeeCall": {
529 "name": "BgeeCall",
530 "version": "1.26.0",
531 "sha256": "1ql6id4l1qchavywbarj0c5vc8j7ars34br9wb4s66is68bb688p",
532 "depends": ["AnnotationDbi", "Biostrings", "GenomicFeatures", "IRanges", "RCurl", "RSQLite", "curl", "data_table", "dplyr", "ggplot2", "jsonlite", "readr", "rhdf5", "rslurm", "rtracklayer", "scales", "sjmisc", "spatstat_univar", "stringr", "txdbmaker", "tximport"]
533 },
534 "BgeeDB": {
535 "name": "BgeeDB",
536 "version": "2.36.0",
537 "sha256": "0a0ldkaibca8iipnyhy8h55za3acii4vchssk497bl0788gybbsc",
538 "depends": ["Biobase", "HDF5Array", "RCurl", "RSQLite", "R_utils", "anndata", "bread", "curl", "data_table", "digest", "dplyr", "graph", "tidyr", "topGO", "zellkonverter"]
539 },
540 "BiFET": {
541 "name": "BiFET",
542 "version": "1.30.0",
543 "sha256": "08w0jfilp954k82px74ppmr7h2k1mzac1788bbp5qdq50vym4iks",
544 "depends": ["GenomicRanges", "poibin"]
545 },
546 "BiRewire": {
547 "name": "BiRewire",
548 "version": "3.41.0",
549 "sha256": "18ckdn0ls29z7i51k6ilnd4d65ci33zcy9lidmr34djyjh732b4v",
550 "depends": ["Matrix", "Rtsne", "igraph", "slam"]
551 },
552 "BiSeq": {
553 "name": "BiSeq",
554 "version": "1.50.0",
555 "sha256": "0j2v6ppb28rf2l3i8jm2afqxban8fpwh83rr5mrvxc5l90i7j1bd",
556 "depends": ["Biobase", "BiocGenerics", "Formula", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "SummarizedExperiment", "betareg", "globaltest", "lokern", "rtracklayer"]
557 },
558 "BicARE": {
559 "name": "BicARE",
560 "version": "1.68.0",
561 "sha256": "1jw4ldm5mhzzcxymdhyqydryxxj5chcs85x3wy5f658vnwb8v1zc",
562 "depends": ["Biobase", "GO_db", "GSEABase", "multtest"]
563 },
564 "BindingSiteFinder": {
565 "name": "BindingSiteFinder",
566 "version": "2.8.0",
567 "sha256": "17fl66fqbyibhgyjisfvjjmprpk1l6vw5mbb67j29skgnyv0882n",
568 "depends": ["ComplexHeatmap", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "dplyr", "forcats", "ggdist", "ggforce", "ggplot2", "kableExtra", "lifecycle", "matrixStats", "plyr", "rlang", "rtracklayer", "tibble", "tidyr"]
569 },
570 "BioCartaImage": {
571 "name": "BioCartaImage",
572 "version": "1.8.0",
573 "sha256": "1p65sdfhsq2iwg87mmxb95r7z92jyrw6b7qxxy3rjb9iwzxqyzc1",
574 "depends": ["magick"]
575 },
576 "BioCor": {
577 "name": "BioCor",
578 "version": "1.34.0",
579 "sha256": "04bfi8mmff5ykxim1rzpfgglbcdy6aj1ha9l86cb6pp40ssp8rn5",
580 "depends": ["BiocParallel", "GSEABase", "Matrix"]
581 },
582 "BioGA": {
583 "name": "BioGA",
584 "version": "1.4.0",
585 "sha256": "0pyylg02l6fsdnmyhmqajy4jlqa2m1xwdkdrdyzqk3cyqp2mrf20",
586 "depends": ["BiocStyle", "Rcpp", "SummarizedExperiment", "animation", "biocViews", "ggplot2", "rlang", "sessioninfo"]
587 },
588 "BioMVCClass": {
589 "name": "BioMVCClass",
590 "version": "1.78.0",
591 "sha256": "0iiz1akgb43kwsk1s318m7scwirksvjbd9kkjv246rpnagwi3im4",
592 "depends": ["Biobase", "MVCClass", "Rgraphviz", "graph"]
593 },
594 "BioNAR": {
595 "name": "BioNAR",
596 "version": "1.11.0",
597 "sha256": "0sfrkliw433lr5bb7hi39nbajvn003dcfr6wj1rg8vfbny9hb1bn",
598 "depends": ["AnnotationDbi", "GO_db", "Matrix", "RSpectra", "Rdpack", "WGCNA", "cowplot", "data_table", "dplyr", "fgsea", "ggplot2", "ggrepel", "igraph", "latex2exp", "minpack_lm", "org_Hs_eg_db", "poweRlaw", "rSpectral", "scales", "stringr", "viridis"]
599 },
600 "BioNERO": {
601 "name": "BioNERO",
602 "version": "1.18.0",
603 "sha256": "1sx68jlh98as80hkwdl6bd0xzdf3qc0cydg3xl8x4zv4wbs03mzy",
604 "depends": ["BiocParallel", "ComplexHeatmap", "GENIE3", "NetRep", "RColorBrewer", "SummarizedExperiment", "WGCNA", "dynamicTreeCut", "ggdendro", "ggnetwork", "ggplot2", "ggrepel", "igraph", "intergraph", "matrixStats", "minet", "patchwork", "reshape2", "rlang", "sva"]
605 },
606 "BioNet": {
607 "name": "BioNet",
608 "version": "1.70.0",
609 "sha256": "1kdx2ib8bki02qszvysqvpq0pj70z1dkinqpzhqvys73kdwpqz3g",
610 "depends": ["AnnotationDbi", "Biobase", "RBGL", "graph", "igraph"]
611 },
612 "BioQC": {
613 "name": "BioQC",
614 "version": "1.38.0",
615 "sha256": "16v51mhmf1pns9ym4crqd0k5swnkmj5gir3rb17j6mcv9s904x7d",
616 "depends": ["Biobase", "Rcpp", "edgeR"]
617 },
618 "BioTIP": {
619 "name": "BioTIP",
620 "version": "1.24.0",
621 "sha256": "0chi6b3ygglll9pfl0i2jhq5sadzhzll2fvxc7gifvfjk4pzqk3a",
622 "depends": ["GenomicRanges", "MASS", "cluster", "doParallel", "foreach", "igraph", "psych", "scran", "stringr"]
623 },
624 "Biobase": {
625 "name": "Biobase",
626 "version": "2.70.0",
627 "sha256": "1g1wh5brsspnjxxnxa0jjp3nl15m7254rk3bn56w71hfchsp82jk",
628 "depends": ["BiocGenerics"]
629 },
630 "Bioc_gff": {
631 "name": "Bioc.gff",
632 "version": "1.0.0",
633 "sha256": "0729zbfvhlbzir5icw1ixy46wabl19bi1l5x78hdgffpg8c66m5x",
634 "depends": ["BiocBaseUtils", "BiocGenerics", "BiocIO", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "XVector", "curl"]
635 },
636 "BiocBaseUtils": {
637 "name": "BiocBaseUtils",
638 "version": "1.12.0",
639 "sha256": "06ha45xxmh0jmk0jvjarf8151vlr6aw8j5a58krckk2n5y9chk48",
640 "depends": []
641 },
642 "BiocBook": {
643 "name": "BiocBook",
644 "version": "1.8.0",
645 "sha256": "0hsbfx3v9bx3lma7v7bnkc4bgixdhgbz3ynxq250zbarrd9vry0b",
646 "depends": ["BiocGenerics", "cli", "dplyr", "gert", "gh", "gitcreds", "glue", "httr", "pak", "purrr", "quarto", "renv", "rlang", "rprojroot", "stringr", "tibble", "usethis", "yaml"]
647 },
648 "BiocCheck": {
649 "name": "BiocCheck",
650 "version": "1.46.0",
651 "sha256": "0fb114cdk8xl9r4kgvril4b8zw082f32mdrxwk564byz5r5r41cl",
652 "depends": ["BiocBaseUtils", "BiocFileCache", "BiocManager", "biocViews", "callr", "cli", "codetools", "graph", "httr2", "knitr", "rvest", "stringdist"]
653 },
654 "BiocFHIR": {
655 "name": "BiocFHIR",
656 "version": "1.12.0",
657 "sha256": "0b8q7v68h22nzby9b54kz058yvk59wkxww04j886bdjsi4lp46cd",
658 "depends": ["BiocBaseUtils", "DT", "dplyr", "graph", "jsonlite", "shiny", "tidyr", "visNetwork"]
659 },
660 "BiocFileCache": {
661 "name": "BiocFileCache",
662 "version": "3.0.0",
663 "sha256": "0gcrvmbqbic7jwk3cnd004d57mazd4ynp2p72l24b7dnrl10ggqm",
664 "depends": ["DBI", "RSQLite", "curl", "dbplyr", "dplyr", "filelock", "httr2"]
665 },
666 "BiocGenerics": {
667 "name": "BiocGenerics",
668 "version": "0.56.0",
669 "sha256": "1q38kdnnlndjbp5zzsfw0a0hkih08ivlqbsxz66s8rx77kv5yy8p",
670 "depends": ["generics"]
671 },
672 "BiocHail": {
673 "name": "BiocHail",
674 "version": "1.10.0",
675 "sha256": "1qh7vdkpdll2l6ghhcdp8m17bcn9y0yd5r2jcm33qgf3xwg0l1pc",
676 "depends": ["BiocFileCache", "BiocGenerics", "basilisk", "dplyr", "reticulate"]
677 },
678 "BiocHubsShiny": {
679 "name": "BiocHubsShiny",
680 "version": "1.10.0",
681 "sha256": "0ffskx4zg1hcb7avaipvgaj3m3ybwmjsp34i9hng6z9x9ivxyzx6",
682 "depends": ["AnnotationHub", "DT", "ExperimentHub", "S4Vectors", "htmlwidgets", "rclipboard", "shiny", "shinyAce", "shinybiocloader", "shinyjs", "shinythemes"]
683 },
684 "BiocIO": {
685 "name": "BiocIO",
686 "version": "1.20.0",
687 "sha256": "12yd8dqs8flcq8k9f5ndk4kyjccm4bw1ml2mn7na4zyi14xq8xw1",
688 "depends": ["BiocGenerics", "S4Vectors"]
689 },
690 "BiocNeighbors": {
691 "name": "BiocNeighbors",
692 "version": "2.4.0",
693 "sha256": "1yx09x4rg254gl34kqzx1hqky7y3waxbmcqhnvss6n3wrbswfrvk",
694 "depends": ["Rcpp", "assorthead"]
695 },
696 "BiocParallel": {
697 "name": "BiocParallel",
698 "version": "1.44.0",
699 "sha256": "1hi3k85ywc8r0sw6fys4987j8mr5vhkha4bcb3hc5fdfnpk6j81v",
700 "depends": ["BH", "codetools", "cpp11", "futile_logger", "snow"]
701 },
702 "BiocPkgTools": {
703 "name": "BiocPkgTools",
704 "version": "1.27.12",
705 "sha256": "03z6b711071k15j8vlm4zgb36vli3y3zh1lnglz1xyimmvhvn9cp",
706 "depends": ["BiocFileCache", "BiocManager", "DT", "RBGL", "biocViews", "curl", "dplyr", "gh", "glue", "graph", "htmltools", "htmlwidgets", "httr", "httr2", "igraph", "jsonlite", "lubridate", "purrr", "readr", "rlang", "rvest", "stringr", "tibble", "tidyr", "xml2", "yaml"]
707 },
708 "BiocSet": {
709 "name": "BiocSet",
710 "version": "1.24.0",
711 "sha256": "06mjk88gm562rmnzb3bj56s5cc4griwlisvv5x4f3av9xlks7mam",
712 "depends": ["AnnotationDbi", "BiocIO", "KEGGREST", "S4Vectors", "dplyr", "ontologyIndex", "plyr", "rlang", "tibble", "tidyr"]
713 },
714 "BiocSingular": {
715 "name": "BiocSingular",
716 "version": "1.26.0",
717 "sha256": "0qyb6a9qay1my04ni2xwpkln5rinlyryhl6x66nqcrv56q8kig5y",
718 "depends": ["BiocGenerics", "BiocParallel", "DelayedArray", "Matrix", "Rcpp", "S4Vectors", "ScaledMatrix", "assorthead", "beachmat", "irlba", "rsvd"]
719 },
720 "BiocSklearn": {
721 "name": "BiocSklearn",
722 "version": "1.32.0",
723 "sha256": "0963xw4vyqlsmmg7i8xk0wb1md3z65znvbyh3i5bzidbnwfi0lmk",
724 "depends": ["SummarizedExperiment", "basilisk", "reticulate"]
725 },
726 "BiocStyle": {
727 "name": "BiocStyle",
728 "version": "2.38.0",
729 "sha256": "0817kgf3d1lsqsg7a3vg5vrb9ia6g4j3x25cfk3j3sg64w3wz158",
730 "depends": ["BiocManager", "bookdown", "knitr", "rmarkdown", "yaml"]
731 },
732 "BiocVersion": {
733 "name": "BiocVersion",
734 "version": "3.22.0",
735 "sha256": "1113nqcv5xr2w1rj8vd4sq4a086fwwmgr6b6zv7aisi2hzqbv2j4",
736 "depends": []
737 },
738 "BiocWorkflowTools": {
739 "name": "BiocWorkflowTools",
740 "version": "1.36.0",
741 "sha256": "1jnch9vbfg4qw912wki4fs60gwjmwia3zksc75lk65wr6q57ibq4",
742 "depends": ["BiocStyle", "bookdown", "git2r", "httr", "knitr", "rmarkdown", "rstudioapi", "stringr", "usethis"]
743 },
744 "Biostrings": {
745 "name": "Biostrings",
746 "version": "2.78.0",
747 "sha256": "11fn7wiw3simgkgk2hka7aiac7n5hnzhjpjfl0ybx8820a76daxk",
748 "depends": ["BiocGenerics", "IRanges", "S4Vectors", "Seqinfo", "XVector", "crayon"]
749 },
750 "BloodGen3Module": {
751 "name": "BloodGen3Module",
752 "version": "1.18.0",
753 "sha256": "0d43amxrmab12xzdrir3xyw03wpkixxc4vz20n50h7ar2wp82cfg",
754 "depends": ["ComplexHeatmap", "ExperimentHub", "SummarizedExperiment", "V8", "circlize", "ggplot2", "gtools", "limma", "matrixStats", "preprocessCore", "randomcoloR", "reshape2", "testthat"]
755 },
756 "BreastSubtypeR": {
757 "name": "BreastSubtypeR",
758 "version": "1.2.0",
759 "sha256": "03v3ql4lrq7wz4aszyg5ssjqyf6nk33jp1xf5f1nsfm2jn9zqvqn",
760 "depends": ["Biobase", "ComplexHeatmap", "RColorBrewer", "SummarizedExperiment", "circlize", "data_table", "dplyr", "e1071", "edgeR", "ggplot2", "ggrepel", "impute", "magrittr", "rlang", "stringr", "tidyselect", "withr"]
761 },
762 "BridgeDbR": {
763 "name": "BridgeDbR",
764 "version": "2.20.0",
765 "sha256": "1znqm7djm0qapf6bg9z8y7h0hyp78b9831g8i2g4h87qn937s6mg",
766 "depends": ["curl", "rJava"]
767 },
768 "BrowserViz": {
769 "name": "BrowserViz",
770 "version": "2.32.0",
771 "sha256": "13qgng7innngs46x2zkng4irsn476crqn2f6a4qd48gc503ynpai",
772 "depends": ["BiocGenerics", "httpuv", "jsonlite"]
773 },
774 "BufferedMatrix": {
775 "name": "BufferedMatrix",
776 "version": "1.74.0",
777 "sha256": "1fig1pjpvr2zkbp4kypr9bbyp8774sq7lxvr6ianw5ikbp5pf9jv",
778 "depends": []
779 },
780 "BufferedMatrixMethods": {
781 "name": "BufferedMatrixMethods",
782 "version": "1.74.0",
783 "sha256": "1x3pizdv9p6axg08h5pk7wqw851rq7djymr9c9r7fpwnkqbfiv7k",
784 "depends": ["BufferedMatrix"]
785 },
786 "BulkSignalR": {
787 "name": "BulkSignalR",
788 "version": "1.2.0",
789 "sha256": "0lx8lfkly78cvmlgj9pscavi7is283ppb0jplgvzm15d5is91376",
790 "depends": ["BiocFileCache", "ComplexHeatmap", "RANN", "RCurl", "Rtsne", "SpatialExperiment", "SummarizedExperiment", "circlize", "cli", "curl", "doParallel", "foreach", "ggalluvial", "ggplot2", "ggrepel", "glmnet", "gridExtra", "httr2", "igraph", "jsonlite", "matrixStats", "multtest", "orthogene", "rlang", "scales", "stabledist"]
791 },
792 "BumpyMatrix": {
793 "name": "BumpyMatrix",
794 "version": "1.18.0",
795 "sha256": "0xz9yqycp91k5m9rf58lp2fvbx44k5lf9wpanrid4v50j82hyipx",
796 "depends": ["IRanges", "Matrix", "S4Vectors"]
797 },
798 "CAEN": {
799 "name": "CAEN",
800 "version": "1.18.0",
801 "sha256": "0knnz2czma0fx3rv6mdrgqs1d3xn883wy9s74g670x4dswfk3vzg",
802 "depends": ["PoiClaClu", "SummarizedExperiment"]
803 },
804 "CAFE": {
805 "name": "CAFE",
806 "version": "1.46.0",
807 "sha256": "13nygknhnwczy6zq6xb18in2ji0drv2wz1xk0ynvz1c6dgsyhb6p",
808 "depends": ["Biobase", "GenomicRanges", "IRanges", "affy", "annotate", "biovizBase", "ggbio", "ggplot2", "gridExtra"]
809 },
810 "CAGEfightR": {
811 "name": "CAGEfightR",
812 "version": "1.30.0",
813 "sha256": "0n2bgzxyhj6pp3zcpk770s0pnhjf25ncgrg0bsxmnr7yl6m7gs4r",
814 "depends": ["BiocGenerics", "BiocParallel", "GenomicAlignments", "GenomicFeatures", "GenomicFiles", "GenomicInteractions", "GenomicRanges", "Gviz", "IRanges", "InteractionSet", "Matrix", "S4Vectors", "Seqinfo", "SummarizedExperiment", "assertthat", "pryr", "rtracklayer"]
815 },
816 "CAGEr": {
817 "name": "CAGEr",
818 "version": "2.16.0",
819 "sha256": "1s4fii9m1irymq5nnbffkj66aigz0rdbwgsxcddn6a7lqjz3xndn",
820 "depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "CAGEfightR", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "KernSmooth", "Matrix", "MultiAssayExperiment", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VGAM", "data_table", "formula_tools", "ggplot2", "gtools", "memoise", "plyr", "reshape2", "rlang", "rtracklayer", "scales", "som", "stringdist", "stringi", "vegan"]
821 },
822 "CAMERA": {
823 "name": "CAMERA",
824 "version": "1.66.0",
825 "sha256": "1sxdpnwyy2ai4f4za5dh9hlksz772a4cc86qjzm24f7j27hw44zm",
826 "depends": ["Biobase", "Hmisc", "RBGL", "graph", "igraph", "xcms"]
827 },
828 "CARDspa": {
829 "name": "CARDspa",
830 "version": "1.2.0",
831 "sha256": "04n4pffqrpgf57crdg3pg0av510y73fkwm6irsvy1kdj183585vv",
832 "depends": ["BiocParallel", "MCMCpack", "Matrix", "NMF", "RANN", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppML", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "concaveman", "dplyr", "fields", "ggcorrplot", "ggplot2", "gtools", "nnls", "reshape2", "scatterpie", "sf", "sp", "spatstat_random", "wrMisc"]
833 },
834 "CARNIVAL": {
835 "name": "CARNIVAL",
836 "version": "2.20.0",
837 "sha256": "1d9nbns330mgi4nkzfvvaxg50lafmf3nd93lrwflsi8mb9p1pjp3",
838 "depends": ["dplyr", "igraph", "lpSolve", "readr", "rjson", "rmarkdown", "stringr", "tibble", "tidyr"]
839 },
840 "CATALYST": {
841 "name": "CATALYST",
842 "version": "1.34.0",
843 "sha256": "0fp0sg010kb7nq2c1v68rw94z5l62vq6wql3w8690baivrp1crj7",
844 "depends": ["ComplexHeatmap", "ConsensusClusterPlus", "FlowSOM", "Matrix", "RColorBrewer", "Rtsne", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "circlize", "cowplot", "data_table", "dplyr", "drc", "flowCore", "ggplot2", "ggrepel", "ggridges", "gridExtra", "matrixStats", "nnls", "purrr", "reshape2", "scales", "scater"]
845 },
846 "CBN2Path": {
847 "name": "CBN2Path",
848 "version": "0.99.18",
849 "sha256": "03sa6j6mbf16gd9zwv4j6hbv8gd2la67h2vk6qmww49rikijmmx4",
850 "depends": ["BiocParallel", "R6", "TCGAbiolinks", "coda", "cowplot", "ggplot2", "ggraph", "igraph", "magrittr", "patchwork", "rlang", "tidygraph"]
851 },
852 "CBNplot": {
853 "name": "CBNplot",
854 "version": "1.10.0",
855 "sha256": "169kj6snwb678q9y253bk3xx6ysv55plmrmf5rc2qhq7a0acarbf",
856 "depends": ["BiocFileCache", "ExperimentHub", "Rmpfr", "bnlearn", "clusterProfiler", "depmap", "dplyr", "enrichplot", "ggdist", "ggforce", "ggplot2", "ggraph", "graphite", "graphlayouts", "igraph", "magrittr", "org_Hs_eg_db", "patchwork", "purrr", "pvclust", "reshape2", "rlang", "stringr", "tidyr"]
857 },
858 "CCAFE": {
859 "name": "CCAFE",
860 "version": "1.2.0",
861 "sha256": "1f8b2ay5dmpkyhwik0wks4k3mbqa97p5akwdycggprrgknmk24yw",
862 "depends": ["VariantAnnotation", "dplyr"]
863 },
864 "CCPROMISE": {
865 "name": "CCPROMISE",
866 "version": "1.36.0",
867 "sha256": "1qbmkmg5hyxrk5dsb33yax47f82b1j9sq1rmg5z9zq5jmy8d5lab",
868 "depends": ["Biobase", "CCP", "GSEABase", "PROMISE"]
869 },
870 "CCPlotR": {
871 "name": "CCPlotR",
872 "version": "1.8.0",
873 "sha256": "1a6pkyl36g5wi8f14hnyn8x97vclmh84l3dcy6gd5h9vddy9kbhg",
874 "depends": ["ComplexHeatmap", "RColorBrewer", "circlize", "dplyr", "forcats", "ggbump", "ggh4x", "ggplot2", "ggraph", "ggtext", "igraph", "patchwork", "plyr", "scales", "scatterpie", "stringr", "tibble", "tidyr", "viridis"]
875 },
876 "CDI": {
877 "name": "CDI",
878 "version": "1.8.0",
879 "sha256": "1k5sxbbmcvb4widaf1r9fzlrhx6q6gqlpiy7lcfrhkhg8l8k2xz6",
880 "depends": ["BiocParallel", "Seurat", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "ggsci", "matrixStats", "reshape2"]
881 },
882 "CEMiTool": {
883 "name": "CEMiTool",
884 "version": "1.34.0",
885 "sha256": "0lbql9dmriz2lpvynbl2yw24mi2acipqq2wmz40rha9jqjdq8lq8",
886 "depends": ["DT", "WGCNA", "clusterProfiler", "data_table", "dplyr", "fastcluster", "fgsea", "ggdendro", "ggplot2", "ggpmisc", "ggrepel", "ggthemes", "gridExtra", "gtable", "htmltools", "igraph", "intergraph", "knitr", "matrixStats", "network", "pracma", "rmarkdown", "scales", "sna", "stringr"]
887 },
888 "CFAssay": {
889 "name": "CFAssay",
890 "version": "1.44.0",
891 "sha256": "0m8p932rzlnnh6wa9d05y9pn1h6zzgv97qkg25xhcfwk98jb3qhj",
892 "depends": []
893 },
894 "CGEN": {
895 "name": "CGEN",
896 "version": "3.46.0",
897 "sha256": "01a6qhrib1d0xv56s2ns4p76zgvq38dsivz6z1l0dqgnjq593br0",
898 "depends": ["mvtnorm", "survival"]
899 },
900 "CGHbase": {
901 "name": "CGHbase",
902 "version": "1.70.0",
903 "sha256": "0hkbm2q24qaga6py5gvdcirrb0paspdb9s7nkvgi7fdrdw8r7lg0",
904 "depends": ["Biobase", "marray"]
905 },
906 "CGHcall": {
907 "name": "CGHcall",
908 "version": "2.72.0",
909 "sha256": "0wb3fmr8f2cdfbq2a3bdpk3v5fwsvr5632k4dsyi9zi33lr0l9zc",
910 "depends": ["Biobase", "CGHbase", "DNAcopy", "impute", "snowfall"]
911 },
912 "CGHnormaliter": {
913 "name": "CGHnormaliter",
914 "version": "1.64.0",
915 "sha256": "0rbbffmfs0a4my9lfha2wicyj37hyxyhz2f5z1x71brfgyl2gc8l",
916 "depends": ["Biobase", "CGHbase", "CGHcall"]
917 },
918 "CGHregions": {
919 "name": "CGHregions",
920 "version": "1.68.0",
921 "sha256": "1rsr876426ncc12x021z2ll17indvxh82w8dflljiwshbw5fyvqi",
922 "depends": ["Biobase", "CGHbase"]
923 },
924 "CHETAH": {
925 "name": "CHETAH",
926 "version": "1.26.0",
927 "sha256": "0nk99mc25ylxl6mzmswswwhyjd1cd4g4mvw8mk2y0anhlldzma83",
928 "depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "bioDist", "corrplot", "cowplot", "dendextend", "ggplot2", "pheatmap", "plotly", "reshape2", "shiny"]
929 },
930 "CHRONOS": {
931 "name": "CHRONOS",
932 "version": "1.38.0",
933 "sha256": "0gkwwx2ka5rn7yl068iy7q5cs3xidyhpy3jja1xx27ri5blql290",
934 "depends": ["RBGL", "RCurl", "XML", "biomaRt", "circlize", "doParallel", "foreach", "graph", "igraph", "openxlsx", "rJava"]
935 },
936 "CIMICE": {
937 "name": "CIMICE",
938 "version": "1.18.0",
939 "sha256": "10nl1dgvp93vgrgib49n3v4jr8jpl8xgc02gf4zr8s5gbsjrd820",
940 "depends": ["Matrix", "assertthat", "dplyr", "expm", "ggcorrplot", "ggplot2", "ggraph", "glue", "igraph", "maftools", "networkD3", "purrr", "tidygraph", "tidyr", "visNetwork"]
941 },
942 "CMA": {
943 "name": "CMA",
944 "version": "1.68.0",
945 "sha256": "0z62z9a1jvddddkqxsajllldadgwcp6ir5h12adb0wys9v2v8h4m",
946 "depends": ["Biobase"]
947 },
948 "CNAnorm": {
949 "name": "CNAnorm",
950 "version": "1.56.0",
951 "sha256": "1jkq0ryv2s7r693y75c1l7dy8p2r9mq9yh369ibv0ybj8r0fa18b",
952 "depends": ["DNAcopy"]
953 },
954 "CNEr": {
955 "name": "CNEr",
956 "version": "1.46.0",
957 "sha256": "18ii60kxr3f1rsydj29ml49gjicnciq7ypvrm1dz2rv4app0bp5j",
958 "depends": ["BiocGenerics", "Biostrings", "DBI", "GO_db", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "KEGGREST", "RSQLite", "R_utils", "S4Vectors", "Seqinfo", "XVector", "annotate", "ggplot2", "poweRlaw", "pwalign", "readr", "reshape2", "rtracklayer"]
959 },
960 "CNORdt": {
961 "name": "CNORdt",
962 "version": "1.52.0",
963 "sha256": "1237z0l800dh45dvj02v2mys9mhh3pg0as760l3lvn95vf0shbj1",
964 "depends": ["CellNOptR", "abind"]
965 },
966 "CNORfeeder": {
967 "name": "CNORfeeder",
968 "version": "1.50.0",
969 "sha256": "1xfymy60fadhzphyin8n5f035c3sj8rd9xcwyas2r1q53nyliwmz",
970 "depends": ["CellNOptR", "graph"]
971 },
972 "CNORfuzzy": {
973 "name": "CNORfuzzy",
974 "version": "1.52.0",
975 "sha256": "0fcda4rmx278i60kgcj0rk70nrf5rqq3sa5b0fn8dqj28p879slb",
976 "depends": ["CellNOptR", "nloptr"]
977 },
978 "CNORode": {
979 "name": "CNORode",
980 "version": "1.52.0",
981 "sha256": "1dma5y9bwidkwr29379iahs41hb6gfczhsx6qncivmp7f62fs49v",
982 "depends": ["CellNOptR", "genalg"]
983 },
984 "CNTools": {
985 "name": "CNTools",
986 "version": "1.66.0",
987 "sha256": "0ya5l1hijqyknzxspdyahnnrrkfl9li54apzhay4lx6qcim7r7dy",
988 "depends": ["genefilter"]
989 },
990 "CNVMetrics": {
991 "name": "CNVMetrics",
992 "version": "1.13.0",
993 "sha256": "0pvlc1blwqar2agnl3hdm467x162n8i3sb6kpzqsr2xw44zvx2w2",
994 "depends": ["BiocParallel", "GenomicRanges", "IRanges", "S4Vectors", "gridExtra", "magrittr", "pheatmap", "rBeta2009"]
995 },
996 "CNVPanelizer": {
997 "name": "CNVPanelizer",
998 "version": "1.42.0",
999 "sha256": "19f3cipi5srwhm33mf12l3840da7dvbpj3yaw1vb1ljhq076fq23",
1000 "depends": ["BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "NOISeq", "Rsamtools", "S4Vectors", "foreach", "ggplot2", "gplots", "openxlsx", "plyr", "reshape2", "shiny", "shinyFiles", "shinyjs", "stringr", "testthat"]
1001 },
1002 "CNVRanger": {
1003 "name": "CNVRanger",
1004 "version": "1.26.0",
1005 "sha256": "0ajca3q7ij72wvdhjv3yb2dxz014ivhsrkdq8zil6hkdcg0afzhi",
1006 "depends": ["BiocGenerics", "BiocParallel", "GDSArray", "GenomeInfoDb", "GenomicRanges", "IRanges", "RaggedExperiment", "S4Vectors", "SNPRelate", "SummarizedExperiment", "data_table", "edgeR", "gdsfmt", "lattice", "limma", "plyr", "qqman", "rappdirs", "reshape2"]
1007 },
1008 "CNVfilteR": {
1009 "name": "CNVfilteR",
1010 "version": "1.24.0",
1011 "sha256": "0qgd3fyy49yqh13nz1vgqsmwrqsfx5as42ydp2qz6qgzj01j781g",
1012 "depends": ["Biostrings", "CopyNumberPlots", "GenomeInfoDb", "GenomicRanges", "IRanges", "Rsamtools", "SummarizedExperiment", "VariantAnnotation", "assertthat", "karyoploteR", "pracma", "regioneR"]
1013 },
1014 "CNViz": {
1015 "name": "CNViz",
1016 "version": "1.18.0",
1017 "sha256": "0f6ah1qvncb87wb6x0jngjh3r6b1ipy8g0hik5hvq6gmwy4n53is",
1018 "depends": ["CopyNumberPlots", "DT", "GenomicRanges", "dplyr", "karyoploteR", "magrittr", "plotly", "scales", "shiny"]
1019 },
1020 "CNVrd2": {
1021 "name": "CNVrd2",
1022 "version": "1.48.0",
1023 "sha256": "120bm81m58b08y4wkk1wqb58xsiqn7jf8adyvga5kjx2gfav61rp",
1024 "depends": ["DNAcopy", "IRanges", "Rsamtools", "VariantAnnotation", "ggplot2", "gridExtra", "rjags"]
1025 },
1026 "COCOA": {
1027 "name": "COCOA",
1028 "version": "2.24.0",
1029 "sha256": "00iwq26f4gjcim4ia0lqsz1mpakifvh2za23s2ds7033r4barg4j",
1030 "depends": ["Biobase", "BiocGenerics", "ComplexHeatmap", "GenomicRanges", "IRanges", "MIRA", "S4Vectors", "data_table", "fitdistrplus", "ggplot2", "simpleCache", "tidyr"]
1031 },
1032 "CODEX": {
1033 "name": "CODEX",
1034 "version": "1.42.0",
1035 "sha256": "09di6yq4m6p7hzk6gasavgf1h91160apac6w5wp1qzl7rjxkw443",
1036 "depends": ["BSgenome_Hsapiens_UCSC_hg19", "Biostrings", "GenomeInfoDb", "IRanges", "Rsamtools", "S4Vectors"]
1037 },
1038 "COMPASS": {
1039 "name": "COMPASS",
1040 "version": "1.48.0",
1041 "sha256": "0w20swwqanphskmb1ds2yby16ynxy4br443504bwm1bk830piqmi",
1042 "depends": ["BiocStyle", "RColorBrewer", "Rcpp", "abind", "clue", "coda", "data_table", "dplyr", "foreach", "knitr", "magrittr", "pdist", "plyr", "reshape2", "rlang", "rmarkdown", "scales", "tidyr"]
1043 },
1044 "CONFESS": {
1045 "name": "CONFESS",
1046 "version": "1.38.0",
1047 "sha256": "1nwsm4hmyndnkqi8xwhr1z7vfysds2v2j0mm37ip1r6sc2l87gln",
1048 "depends": ["EBImage", "MASS", "SamSPECTRAL", "changepoint", "cluster", "contrast", "data_table", "ecp", "flexmix", "flowClust", "flowCore", "flowMeans", "flowMerge", "flowPeaks", "foreach", "ggplot2", "limma", "moments", "outliers", "plotrix", "raster", "readbitmap", "reshape2", "waveslim", "wavethresh", "zoo"]
1049 },
1050 "CONSTANd": {
1051 "name": "CONSTANd",
1052 "version": "1.18.0",
1053 "sha256": "0i25ggwn69dk34iwaa8krpba81g15k8f6aj31jzmv8j2x0fgbx8v",
1054 "depends": []
1055 },
1056 "COSNet": {
1057 "name": "COSNet",
1058 "version": "1.44.0",
1059 "sha256": "07ipxvl880kh0wcplq68yaimzijzss7q34f999a0h76zynr6736n",
1060 "depends": []
1061 },
1062 "COTAN": {
1063 "name": "COTAN",
1064 "version": "2.10.0",
1065 "sha256": "0msq2ij3ppyzpsbc7ziyrhgwpxw3a91bncb4xg3bzz1w396q0hq4",
1066 "depends": ["BiocSingular", "ComplexHeatmap", "Matrix", "RColorBrewer", "RSpectra", "Rfast", "Seurat", "SingleCellExperiment", "assertthat", "circlize", "dendextend", "dplyr", "gghalves", "ggplot2", "ggrepel", "ggthemes", "parallelDist", "parallelly", "proxy", "rlang", "scales", "stringr", "tibble", "tidyr", "withr", "zeallot"]
1067 },
1068 "CPSM": {
1069 "name": "CPSM",
1070 "version": "1.2.0",
1071 "sha256": "0a191x65v5vhyzcf16flqa7rs6xjq3ds6icv2r0263cjn0y21hiy",
1072 "depends": ["Hmisc", "MASS", "MTLR", "Matrix", "SummarizedExperiment", "SurvMetrics", "caret", "ggfortify", "ggplot2", "glmnet", "preprocessCore", "randomForestSRC", "reshape2", "rms", "survival", "survminer"]
1073 },
1074 "CRISPRseek": {
1075 "name": "CRISPRseek",
1076 "version": "1.50.0",
1077 "sha256": "1248b7jniz2d2cj3srrqfx0aaga42g9pymbhawwjcaasknyb83lp",
1078 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "DelayedArray", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "XVector", "data_table", "dplyr", "gtools", "hash", "keras", "mltools", "openxlsx", "reticulate", "rhdf5", "rio", "rlang", "seqinr", "stringr"]
1079 },
1080 "CRImage": {
1081 "name": "CRImage",
1082 "version": "1.58.0",
1083 "sha256": "19yafswp9j5s0k1wd8891vlkqjgj7249mh075qg8gjaxknc0x7q2",
1084 "depends": ["DNAcopy", "EBImage", "MASS", "aCGH", "e1071", "foreach", "sgeostat"]
1085 },
1086 "CSAR": {
1087 "name": "CSAR",
1088 "version": "1.62.0",
1089 "sha256": "0bi6iav4255bvbidi1cy6k1dnvijypy8ypxd2kg6sfcgsz8pgir6",
1090 "depends": ["GenomicRanges", "IRanges", "S4Vectors", "Seqinfo"]
1091 },
1092 "CSOA": {
1093 "name": "CSOA",
1094 "version": "1.0.0",
1095 "sha256": "0rs8qn6i55xhf5ci19yihc4wdq51zyav1zx5ax1z6ivd5v0jhv9g",
1096 "depends": ["Seurat", "SeuratObject", "SummarizedExperiment", "bayesbio", "dplyr", "ggplot2", "henna", "kerntools", "qs", "reshape2", "rlang", "sgof", "spatstat_utils", "textshape", "wesanderson"]
1097 },
1098 "CSSQ": {
1099 "name": "CSSQ",
1100 "version": "1.22.0",
1101 "sha256": "15nn72g3a1ji4fla29s5jdwy8ihswg1gv9vjc2cglxlixisrj9jq",
1102 "depends": ["GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "SummarizedExperiment", "ggplot2", "rtracklayer"]
1103 },
1104 "CTDquerier": {
1105 "name": "CTDquerier",
1106 "version": "2.18.0",
1107 "sha256": "0rf6qf6ycxn183njf7qj94rj7g5m9p44c5wyysn6fkw3yxlvqq3a",
1108 "depends": ["BiocFileCache", "RCurl", "S4Vectors", "ggplot2", "gridExtra", "igraph", "stringdist", "stringr"]
1109 },
1110 "CTSV": {
1111 "name": "CTSV",
1112 "version": "1.12.0",
1113 "sha256": "10df3fd2jj29sf05p36l6aswibqhfi9x6sa6ql7z0zhhr3frprjv",
1114 "depends": ["BiocParallel", "SpatialExperiment", "SummarizedExperiment", "knitr", "pscl", "qvalue"]
1115 },
1116 "CTdata": {
1117 "name": "CTdata",
1118 "version": "1.10.0",
1119 "sha256": "0izpgr94hqha38aik6dvip6wbrzynyqwpms403sd6f0vcm559k51",
1120 "depends": ["ExperimentHub"]
1121 },
1122 "CTexploreR": {
1123 "name": "CTexploreR",
1124 "version": "1.6.0",
1125 "sha256": "0c5x958gg18lm6q9g7i32p13ng3y0z1lpgds3mpsj58lv2iavpn8",
1126 "depends": ["BiocGenerics", "CTdata", "ComplexHeatmap", "GenomicRanges", "IRanges", "MatrixGenerics", "SingleCellExperiment", "SummarizedExperiment", "circlize", "dplyr", "ggplot2", "ggrepel", "rlang", "tibble", "tidyr"]
1127 },
1128 "CaDrA": {
1129 "name": "CaDrA",
1130 "version": "1.8.0",
1131 "sha256": "0x3d5qam54x177qbk0z2qdylb2kx93hb6616z5148bjn2bnwlhy3",
1132 "depends": ["MASS", "R_cache", "SummarizedExperiment", "doParallel", "ggplot2", "gplots", "gtable", "knnmi", "misc3d", "plyr", "ppcor", "reshape2"]
1133 },
1134 "CaMutQC": {
1135 "name": "CaMutQC",
1136 "version": "1.6.0",
1137 "sha256": "13j264akf38aln2kc3899yj7r77fs255vhp2hb2zm2h0fxm006ry",
1138 "depends": ["DT", "MesKit", "clusterProfiler", "data_table", "dplyr", "ggplot2", "maftools", "org_Hs_eg_db", "stringr", "tidyr", "vcfR"]
1139 },
1140 "CalibraCurve": {
1141 "name": "CalibraCurve",
1142 "version": "1.0.0",
1143 "sha256": "0x73svnc2h6ib43zagq0qaavqv16zp26gg7hd9525mfkxcbhpqrv",
1144 "depends": ["SummarizedExperiment", "checkmate", "dplyr", "ggplot2", "magrittr", "openxlsx", "scales", "tidyr"]
1145 },
1146 "Cardinal": {
1147 "name": "Cardinal",
1148 "version": "3.12.0",
1149 "sha256": "0399hpf81s5hfd2yrq62md29p7y1f55wqb6kn9n3kg6i1z12qdpn",
1150 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "CardinalIO", "EBImage", "Matrix", "ProtGenerics", "S4Vectors", "irlba", "matter", "nlme"]
1151 },
1152 "CardinalIO": {
1153 "name": "CardinalIO",
1154 "version": "1.8.0",
1155 "sha256": "1qfb61gbrjq05dd53smdvk04gcgvr15jkpnkcjydl2g12sdnxfnp",
1156 "depends": ["BiocParallel", "S4Vectors", "matter", "ontologyIndex"]
1157 },
1158 "Category": {
1159 "name": "Category",
1160 "version": "2.76.0",
1161 "sha256": "1awaxnmnzs260pl2lzvmbhds17347kjln11iwbpabisyrvx8gzb2",
1162 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DBI", "GSEABase", "Matrix", "RBGL", "annotate", "genefilter", "graph"]
1163 },
1164 "CatsCradle": {
1165 "name": "CatsCradle",
1166 "version": "1.3.3",
1167 "sha256": "1rrwxjscma49bmhpyx8gv4lgqyrngqzk77phbryajpmagw81mfwl",
1168 "depends": ["EBImage", "Matrix", "Rfast", "S4Vectors", "Seurat", "SeuratObject", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "abind", "data_table", "geometry", "ggplot2", "igraph", "msigdbr", "networkD3", "pheatmap", "pracma", "rdist", "reshape2", "stringr"]
1169 },
1170 "CausalR": {
1171 "name": "CausalR",
1172 "version": "1.42.0",
1173 "sha256": "0h4p9ml4kv0wbphs9whbyq18yakq8wlwkvac1kg5q6ym43v8w2zw",
1174 "depends": ["igraph"]
1175 },
1176 "CeTF": {
1177 "name": "CeTF",
1178 "version": "1.22.0",
1179 "sha256": "0ri9kkx8iysz54iq79r3ngmgw0zhwl9svw82l5a67jjd74wwai1l",
1180 "depends": ["ComplexHeatmap", "DESeq2", "GGally", "GenomicTools_fileHandler", "Matrix", "RCy3", "Rcpp", "RcppArmadillo", "S4Vectors", "SummarizedExperiment", "circlize", "clusterProfiler", "dplyr", "ggnetwork", "ggplot2", "ggpubr", "ggrepel", "igraph", "network"]
1181 },
1182 "CellBarcode": {
1183 "name": "CellBarcode",
1184 "version": "1.16.0",
1185 "sha256": "033ysn8kins6w66nkl6m5spc65g1k1bi08adnp69jz2ygr0drf5y",
1186 "depends": ["BH", "Biostrings", "Ckmeans_1d_dp", "Rcpp", "Rsamtools", "S4Vectors", "ShortRead", "data_table", "egg", "ggplot2", "magrittr", "plyr", "seqinr", "stringr"]
1187 },
1188 "CellBench": {
1189 "name": "CellBench",
1190 "version": "1.26.0",
1191 "sha256": "0zqa72c2g92ibzy5wgpj5g4g6vnfsg0jk1j49avbh0jrmhkxk4jw",
1192 "depends": ["BiocFileCache", "BiocGenerics", "BiocParallel", "SingleCellExperiment", "assertthat", "dplyr", "glue", "lubridate", "magrittr", "memoise", "purrr", "rappdirs", "rlang", "tibble", "tidyr", "tidyselect"]
1193 },
1194 "CellMapper": {
1195 "name": "CellMapper",
1196 "version": "1.36.0",
1197 "sha256": "0vrwxiqbrn1ij1kr17ppzgb22livf78x1j8sj6shv7g5as09mabk",
1198 "depends": ["S4Vectors"]
1199 },
1200 "CellMixS": {
1201 "name": "CellMixS",
1202 "version": "1.26.0",
1203 "sha256": "1asdsy8i9wlwnxjfkvxa28n2sdkphd5qn0v7lkhj7vk9nh0f4zf2",
1204 "depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "SingleCellExperiment", "SummarizedExperiment", "cowplot", "dplyr", "ggplot2", "ggridges", "kSamples", "magrittr", "purrr", "scater", "tidyr", "viridis"]
1205 },
1206 "CellNOptR": {
1207 "name": "CellNOptR",
1208 "version": "1.56.0",
1209 "sha256": "0p4jj80qhll4ih0mxz32f2s29cfxmwcxd2ipsb6rr0081c3jbiwi",
1210 "depends": ["RBGL", "RCurl", "Rgraphviz", "XML", "ggplot2", "graph", "igraph", "rmarkdown", "stringi", "stringr"]
1211 },
1212 "CellTrails": {
1213 "name": "CellTrails",
1214 "version": "1.28.0",
1215 "sha256": "0ssyb5qfnbcippqj2d9y9lvnimqicmzb4rhfhpxhi2rflra5rlp6",
1216 "depends": ["Biobase", "BiocGenerics", "EnvStats", "Rtsne", "SingleCellExperiment", "SummarizedExperiment", "cba", "dendextend", "dtw", "ggplot2", "ggrepel", "igraph", "maptree", "mgcv", "reshape2"]
1217 },
1218 "CelliD": {
1219 "name": "CelliD",
1220 "version": "1.18.0",
1221 "sha256": "1bvj7n2qxfvy1fmjqmm1w65fcj7fy5h74i0jgl0a0940mlhd7s9v",
1222 "depends": ["BiocParallel", "Matrix", "Rcpp", "RcppArmadillo", "Rtsne", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "data_table", "fastmatch", "fgsea", "ggplot2", "glue", "irlba", "matrixStats", "pbapply", "reticulate", "scater", "stringr", "tictoc", "umap"]
1223 },
1224 "Cepo": {
1225 "name": "Cepo",
1226 "version": "1.16.0",
1227 "sha256": "0j3z7pycc30zk1j2b7skk2jav4z9cp6n1qhzn9gji6qzxkzrzpyb",
1228 "depends": ["BiocParallel", "DelayedArray", "DelayedMatrixStats", "GSEABase", "HDF5Array", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "patchwork", "purrr", "reshape2", "rlang"]
1229 },
1230 "CexoR": {
1231 "name": "CexoR",
1232 "version": "1.48.0",
1233 "sha256": "1ah5564xyxm2c1rg5qircsz7cg3wil3q4kmxmvwc2nw867pdzhk4",
1234 "depends": ["GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "genomation", "idr", "rtracklayer"]
1235 },
1236 "ChAMP": {
1237 "name": "ChAMP",
1238 "version": "2.40.0",
1239 "sha256": "151q3702xfll347y9yfbslcagd6idagk69jv69vd3yqzwacg58w2",
1240 "depends": ["ChAMPdata", "DMRcate", "DNAcopy", "DT", "GenomicRanges", "Hmisc", "Illumina450ProbeVariants_db", "IlluminaHumanMethylation450kmanifest", "IlluminaHumanMethylationEPICanno_ilm10b4_hg19", "IlluminaHumanMethylationEPICmanifest", "RColorBrewer", "RPMM", "bumphunter", "combinat", "dendextend", "doParallel", "ggplot2", "globaltest", "goseq", "illuminaio", "impute", "isva", "limma", "marray", "matrixStats", "minfi", "missMethyl", "plotly", "plyr", "preprocessCore", "prettydoc", "quadprog", "qvalue", "rmarkdown", "shiny", "shinythemes", "sva", "wateRmelon"]
1241 },
1242 "ChIPComp": {
1243 "name": "ChIPComp",
1244 "version": "1.40.0",
1245 "sha256": "0mbsrq97bfi3fpf2lyq1q2bqrhl1y2klk6x2ydvph2m0k3zbhp5n",
1246 "depends": ["BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Mmusculus_UCSC_mm9", "BiocGenerics", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "limma", "rtracklayer"]
1247 },
1248 "ChIPXpress": {
1249 "name": "ChIPXpress",
1250 "version": "1.54.0",
1251 "sha256": "1rpn1c07by5zjkh2nnm5jrcz81ixp6zmhfj51a13hcz1bsa4as16",
1252 "depends": ["Biobase", "ChIPXpressData", "GEOquery", "affy", "biganalytics", "bigmemory", "frma"]
1253 },
1254 "ChIPanalyser": {
1255 "name": "ChIPanalyser",
1256 "version": "1.32.0",
1257 "sha256": "1sd9wcdn4miawyyp5z5q2xqjvzhgjpahdbha9fgpgbnlx8qq7yvg",
1258 "depends": ["BSgenome", "BiocManager", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "ROCR", "RcppRoll", "S4Vectors", "rtracklayer"]
1259 },
1260 "ChIPexoQual": {
1261 "name": "ChIPexoQual",
1262 "version": "1.34.0",
1263 "sha256": "1z72y7jfl1gmcgkkrjqjhj8cq8c224llrdihgrr2zj2k7nsqhnkd",
1264 "depends": ["BiocParallel", "GenomicAlignments", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "biovizBase", "broom", "data_table", "dplyr", "ggplot2", "hexbin", "rmarkdown", "scales", "viridis"]
1265 },
1266 "ChIPpeakAnno": {
1267 "name": "ChIPpeakAnno",
1268 "version": "3.44.0",
1269 "sha256": "0i3iw6wafpwb2l99ay306wdafjb25wwpjvrggq515vibz7zvrxh2",
1270 "depends": ["AnnotationDbi", "BiocGenerics", "Biostrings", "DBI", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "InteractionSet", "KEGGREST", "RBGL", "Rsamtools", "S4Vectors", "SummarizedExperiment", "VennDiagram", "biomaRt", "data_table", "dplyr", "ensembldb", "ggplot2", "graph", "matrixStats", "multtest", "pwalign", "regioneR", "rtracklayer", "scales", "stringr", "tibble", "tidyr", "universalmotif"]
1271 },
1272 "ChIPseeker": {
1273 "name": "ChIPseeker",
1274 "version": "1.45.0",
1275 "sha256": "1rq9jj7gs3g2dvzpglhydiyd76l4i12kc47l9gl7lcvnwpvpkbn8",
1276 "depends": ["AnnotationDbi", "BiocGenerics", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "TxDb_Hsapiens_UCSC_hg19_knownGene", "aplot", "boot", "dplyr", "enrichplot", "ggplot2", "gplots", "gtools", "magrittr", "plotrix", "rlang", "rtracklayer", "scales", "tibble", "yulab_utils"]
1277 },
1278 "ChIPseqR": {
1279 "name": "ChIPseqR",
1280 "version": "1.64.0",
1281 "sha256": "0zzmxaiz3n025qicf1vj4xlnz05xa8d0iahk6s3pvc91az4r35jc",
1282 "depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "HilbertVis", "IRanges", "S4Vectors", "ShortRead", "fBasics", "timsac"]
1283 },
1284 "ChIPsim": {
1285 "name": "ChIPsim",
1286 "version": "1.64.0",
1287 "sha256": "0f3lvdn44njfk5172ds0g6zk0hcmx41mkhyz34gisbxm5w0ba578",
1288 "depends": ["Biostrings", "IRanges", "ShortRead", "XVector"]
1289 },
1290 "ChemmineOB": {
1291 "name": "ChemmineOB",
1292 "version": "1.48.0",
1293 "sha256": "03pw3758my4j5d94kg3vklqy6nmp2aw664d55kwd6ww21xi0b0ln",
1294 "depends": ["BH", "BiocGenerics", "Rcpp"]
1295 },
1296 "ChemmineR": {
1297 "name": "ChemmineR",
1298 "version": "3.62.0",
1299 "sha256": "0yvf72nz3s151hsclwk8ch0rypsm7a4z3w49ds7rnqd92q1h0rx5",
1300 "depends": ["BH", "BiocGenerics", "DBI", "DT", "RCurl", "Rcpp", "base64enc", "digest", "ggplot2", "gridExtra", "jsonlite", "png", "rjson", "rsvg", "stringi"]
1301 },
1302 "Chicago": {
1303 "name": "Chicago",
1304 "version": "1.38.0",
1305 "sha256": "1bmc7b6fgq5bw9msp4snycvw00r4wxasax9li92zsw3kva9ys941",
1306 "depends": ["Delaporte", "Hmisc", "MASS", "data_table", "matrixStats"]
1307 },
1308 "ChromHeatMap": {
1309 "name": "ChromHeatMap",
1310 "version": "1.64.0",
1311 "sha256": "0v499mfdhhbf9yspaayk6pdzarspjsdgj3swnfw8zwd1qiazbidp",
1312 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "annotate", "rtracklayer"]
1313 },
1314 "ChromSCape": {
1315 "name": "ChromSCape",
1316 "version": "1.20.0",
1317 "sha256": "103qfjjdzbi7nn3qlz28rm88p1qlphd98dqwmpr3fffg864kg885",
1318 "depends": ["BiocParallel", "ConsensusClusterPlus", "DT", "DelayedArray", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "Rsamtools", "Rtsne", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "batchelor", "colorRamps", "colourpicker", "coop", "dplyr", "edgeR", "forcats", "fs", "gggenes", "ggplot2", "ggrepel", "gridExtra", "irlba", "jsonlite", "kableExtra", "matrixTests", "msigdbr", "plotly", "qs", "qualV", "rlist", "rtracklayer", "scater", "scran", "shiny", "shinyFiles", "shinyWidgets", "shinycssloaders", "shinydashboard", "shinydashboardPlus", "shinyhelper", "shinyjs", "stringdist", "stringr", "tibble", "tidyr", "umap", "viridis"]
1319 },
1320 "Chromatograms": {
1321 "name": "Chromatograms",
1322 "version": "1.0.0",
1323 "sha256": "1kam7kxcldag928m97zdp9665lg5ypd9nlamzz1hdamhd0ayqkg2",
1324 "depends": ["BiocParallel", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra"]
1325 },
1326 "CircSeqAlignTk": {
1327 "name": "CircSeqAlignTk",
1328 "version": "1.12.0",
1329 "sha256": "0494hwvdip55c44vkwr5a2y2nmv5q1r4nk2c6fdwrwc2wc4lg6jb",
1330 "depends": ["BiocGenerics", "Biostrings", "IRanges", "R_utils", "Rbowtie2", "Rhisat2", "Rsamtools", "S4Vectors", "ShortRead", "dplyr", "ggplot2", "htmltools", "magrittr", "plotly", "rlang", "shiny", "shinyFiles", "shinyjs", "tidyr"]
1331 },
1332 "CiteFuse": {
1333 "name": "CiteFuse",
1334 "version": "1.22.0",
1335 "sha256": "1s51ch8j0p7h2g13db0g1mcrg1kixby0jg75nx21aa55rjj1qrw7",
1336 "depends": ["Matrix", "Rcpp", "Rtsne", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "compositions", "cowplot", "dbscan", "ggplot2", "ggraph", "ggridges", "gridExtra", "igraph", "mixtools", "pheatmap", "randomForest", "reshape2", "rhdf5", "rlang", "scales", "scran", "uwot"]
1337 },
1338 "ClassifyR": {
1339 "name": "ClassifyR",
1340 "version": "3.14.0",
1341 "sha256": "1bxvd5nwjk3i3n6ygp11j22451gcsjq91vc118fp4sc7vk4fpabw",
1342 "depends": ["BiocParallel", "MultiAssayExperiment", "S4Vectors", "broom", "dcanr", "dplyr", "genefilter", "generics", "ggplot2", "ggpubr", "ggupset", "ranger", "reshape2", "rlang", "survival", "tidyr"]
1343 },
1344 "CleanUpRNAseq": {
1345 "name": "CleanUpRNAseq",
1346 "version": "1.4.0",
1347 "sha256": "0iz4rcbasg9ji5n074imsq2inwwr6vndr6hn94954cz2c7g73qsx",
1348 "depends": ["AnnotationFilter", "BSgenome", "BiocGenerics", "Biostrings", "DESeq2", "GenomicRanges", "KernSmooth", "R6", "RColorBrewer", "Rsamtools", "Rsubread", "Seqinfo", "SummarizedExperiment", "edgeR", "ensembldb", "ggplot2", "ggrepel", "limma", "pheatmap", "qsmooth", "reshape2", "tximport"]
1349 },
1350 "Clomial": {
1351 "name": "Clomial",
1352 "version": "1.46.0",
1353 "sha256": "0mkbfnj05pj5qfk5zc3zdyh32pm1arq1rv6yg4dp3mabh156w01z",
1354 "depends": ["matrixStats", "permute"]
1355 },
1356 "CluMSID": {
1357 "name": "CluMSID",
1358 "version": "1.26.0",
1359 "sha256": "15a4j5374cy5zw52h643csmwkcd9i6826ilm6sabm1hgq1134gmp",
1360 "depends": ["Biobase", "GGally", "MSnbase", "RColorBrewer", "S4Vectors", "ape", "dbscan", "ggplot2", "gplots", "mzR", "network", "plotly", "sna"]
1361 },
1362 "ClustAll": {
1363 "name": "ClustAll",
1364 "version": "1.6.0",
1365 "sha256": "1rvyrqdyg6qmi18qbv9mzhq1rdr24kbm9aizgrw67j9znmz70mxs",
1366 "depends": ["ComplexHeatmap", "FactoMineR", "RColorBrewer", "bigstatsr", "circlize", "clValid", "cluster", "doSNOW", "dplyr", "flock", "foreach", "fpc", "ggplot2", "mice", "modeest", "networkD3", "pbapply"]
1367 },
1368 "ClustIRR": {
1369 "name": "ClustIRR",
1370 "version": "1.8.0",
1371 "sha256": "1lk074kvgfxj6bwqv6jmbgx3nphh07sj5hlcpvy8695j9sjmjn5s",
1372 "depends": ["BH", "Rcpp", "RcppEigen", "RcppParallel", "StanHeaders", "blaster", "dplyr", "future", "future_apply", "ggforce", "ggplot2", "igraph", "posterior", "reshape2", "rstan", "rstantools", "scales", "stringdist", "tidyr", "visNetwork"]
1373 },
1374 "ClusterFoldSimilarity": {
1375 "name": "ClusterFoldSimilarity",
1376 "version": "1.6.0",
1377 "sha256": "08jhfqr7llnrm9b673vclnd9xqn37jzbmml0p5w7bqcvk4jy6cls",
1378 "depends": ["BiocParallel", "Matrix", "Seurat", "SeuratObject", "SingleCellExperiment", "cowplot", "dplyr", "ggdendro", "ggplot2", "igraph", "reshape2", "scales"]
1379 },
1380 "ClusterJudge": {
1381 "name": "ClusterJudge",
1382 "version": "1.32.0",
1383 "sha256": "00ybl4r3dhrfi3zagvpn7imd04c6xjd7a9vfyzpd5nk9kkxj5mhz",
1384 "depends": ["httr", "infotheo", "jsonlite", "lattice", "latticeExtra"]
1385 },
1386 "ClusterSignificance": {
1387 "name": "ClusterSignificance",
1388 "version": "1.38.0",
1389 "sha256": "1h7ik2yryy29sjsr3lgv8g7bqgm0a4b0w3mn10hk0ympaprdjmgd",
1390 "depends": ["RColorBrewer", "pracma", "princurve", "scatterplot3d"]
1391 },
1392 "CoCiteStats": {
1393 "name": "CoCiteStats",
1394 "version": "1.82.0",
1395 "sha256": "10szmhg289a8i8kcwb55dn4pbaiacgc2lsikn03733rxx81j54pi",
1396 "depends": ["AnnotationDbi", "org_Hs_eg_db"]
1397 },
1398 "CoGAPS": {
1399 "name": "CoGAPS",
1400 "version": "3.30.0",
1401 "sha256": "1clxww4nmgf1a9swyxz41050nar2svzsqfxj5gy4w29ak0di84p2",
1402 "depends": ["BH", "BiocParallel", "RColorBrewer", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "cluster", "dplyr", "fgsea", "forcats", "ggplot2", "gplots", "rhdf5", "testthat"]
1403 },
1404 "Cogito": {
1405 "name": "Cogito",
1406 "version": "1.16.0",
1407 "sha256": "1bhig4q9pyrsm2gvl2h5j3ll963baqw2lr7d56baa8s5faz9wcw6",
1408 "depends": ["AnnotationDbi", "BiocManager", "GenomicFeatures", "GenomicRanges", "S4Vectors", "Seqinfo", "TxDb_Mmusculus_UCSC_mm9_knownGene", "entropy", "ggplot2", "jsonlite", "magrittr", "rmarkdown"]
1409 },
1410 "ComPrAn": {
1411 "name": "ComPrAn",
1412 "version": "1.18.0",
1413 "sha256": "1im8vwdllwmrmrdxc2rjjm57896z9rsq3z2gkx27d8yrvvba833p",
1414 "depends": ["DT", "RColorBrewer", "VennDiagram", "data_table", "dplyr", "forcats", "ggplot2", "magrittr", "purrr", "rio", "rlang", "scales", "shiny", "shinydashboard", "shinyjs", "stringr", "tibble", "tidyr"]
1415 },
1416 "ComplexHeatmap": {
1417 "name": "ComplexHeatmap",
1418 "version": "2.26.0",
1419 "sha256": "1ibphh0x0drr0hm0pk96hs8mgxp5fy6ixs8ak4imyawqdjha3s68",
1420 "depends": ["GetoptLong", "GlobalOptions", "IRanges", "RColorBrewer", "circlize", "clue", "codetools", "colorspace", "digest", "doParallel", "foreach", "matrixStats", "png"]
1421 },
1422 "CompoundDb": {
1423 "name": "CompoundDb",
1424 "version": "1.14.0",
1425 "sha256": "1zpb8w0ahgfhj28lgzvdaf6540x00gh98lval0i8svgjhb3mk8qj",
1426 "depends": ["AnnotationFilter", "Biobase", "BiocGenerics", "BiocParallel", "ChemmineR", "DBI", "IRanges", "MetaboCoreUtils", "MsCoreUtils", "ProtGenerics", "RSQLite", "S4Vectors", "Spectra", "dbplyr", "dplyr", "jsonlite", "stringi", "tibble", "xml2"]
1427 },
1428 "ConsensusClusterPlus": {
1429 "name": "ConsensusClusterPlus",
1430 "version": "1.74.0",
1431 "sha256": "1qci7bz3f99lbs1bdjb3sn49751vi1f5367x6cr1246606s72n0f",
1432 "depends": ["ALL", "Biobase", "cluster"]
1433 },
1434 "CopyNumberPlots": {
1435 "name": "CopyNumberPlots",
1436 "version": "1.26.0",
1437 "sha256": "0vq9jv4lq89x2yp66v075i7wv861z2ph7kzv28nswbivnlwj0763",
1438 "depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "Rsamtools", "SummarizedExperiment", "VariantAnnotation", "cn_mops", "karyoploteR", "regioneR", "rhdf5"]
1439 },
1440 "Coralysis": {
1441 "name": "Coralysis",
1442 "version": "1.0.0",
1443 "sha256": "15f3jl8na86lbp27al6fhzi7xpyy9hc4gqdcyzm0hjmycfzdzk4x",
1444 "depends": ["BiocParallel", "LiblineaR", "Matrix", "RANN", "RColorBrewer", "RSpectra", "Rtsne", "S4Vectors", "SingleCellExperiment", "SparseM", "SummarizedExperiment", "aricode", "class", "cowplot", "dplyr", "flexclust", "ggplot2", "ggrastr", "ggrepel", "irlba", "matrixStats", "pheatmap", "reshape2", "scatterpie", "scran", "sparseMatrixStats", "tidyr", "umap", "uwot", "withr"]
1445 },
1446 "CoreGx": {
1447 "name": "CoreGx",
1448 "version": "2.14.0",
1449 "sha256": "189akh4lpbp0dzgflb3nb3vi94bhmsj7qkcl597dnnzxqz00hsb2",
1450 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "BumpyMatrix", "MatrixGenerics", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "bench", "checkmate", "crayon", "data_table", "glue", "lsa", "piano", "rlang"]
1451 },
1452 "Cormotif": {
1453 "name": "Cormotif",
1454 "version": "1.56.0",
1455 "sha256": "1b8lcm4l6d1zg3laj8gqagfbrc97r2zz0413xcw01h2xxqg5cv46",
1456 "depends": ["affy", "limma"]
1457 },
1458 "CoverageView": {
1459 "name": "CoverageView",
1460 "version": "1.48.0",
1461 "sha256": "0fnrgacv2ggfzp4i7c9x0368pviw224ldar2nijf5iwi07dhny9a",
1462 "depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "rtracklayer"]
1463 },
1464 "CrispRVariants": {
1465 "name": "CrispRVariants",
1466 "version": "1.38.0",
1467 "sha256": "1msdk4g8qhkqkwi003f33pk0m6mm311ymnggdgzib106iqy1kxb5",
1468 "depends": ["AnnotationDbi", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "ggplot2", "gridExtra", "reshape2"]
1469 },
1470 "CuratedAtlasQueryR": {
1471 "name": "CuratedAtlasQueryR",
1472 "version": "1.8.0",
1473 "sha256": "1hggl8m9hj2mvhkkhs3y44ypra5bsikv4vk97d2qkq6c8q8idrm4",
1474 "depends": ["BiocGenerics", "DBI", "HDF5Array", "S4Vectors", "Seurat", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "assertthat", "cli", "dbplyr", "dplyr", "duckdb", "glue", "httr", "purrr", "rlang", "stringr", "tibble"]
1475 },
1476 "CyTOFpower": {
1477 "name": "CyTOFpower",
1478 "version": "1.16.0",
1479 "sha256": "1qhli9jf5h62h40zbsxd7q3kgyjxn2afii7s1zv2yb4yz9vpcd55",
1480 "depends": ["CytoGLMM", "DT", "SummarizedExperiment", "diffcyt", "dplyr", "ggplot2", "magrittr", "rlang", "shiny", "shinyFeedback", "shinyMatrix", "shinyjs", "tibble", "tidyr"]
1481 },
1482 "CytoDx": {
1483 "name": "CytoDx",
1484 "version": "1.30.0",
1485 "sha256": "1jdml013lm0lyyvrgs11q6bi69zlkm8sws4fkg7y3y1i2qnakb7r",
1486 "depends": ["doParallel", "dplyr", "flowCore", "glmnet", "rpart", "rpart_plot"]
1487 },
1488 "CytoGLMM": {
1489 "name": "CytoGLMM",
1490 "version": "1.18.0",
1491 "sha256": "0kbcb3lzz0mdfwgk5vhbgfj55fx7k6ncq89hrkh4yxx9lsjm2k20",
1492 "depends": ["BiocParallel", "MASS", "Matrix", "RColorBrewer", "caret", "cowplot", "doParallel", "dplyr", "factoextra", "flexmix", "ggplot2", "ggrepel", "logging", "magrittr", "mbest", "pheatmap", "rlang", "stringr", "strucchange", "tibble", "tidyr"]
1493 },
1494 "CytoMDS": {
1495 "name": "CytoMDS",
1496 "version": "1.6.0",
1497 "sha256": "08iwzasgvgzgc4ihxqwqhj1l56ak4id719v0fgky7r40l4czrqkn",
1498 "depends": ["Biobase", "BiocParallel", "CytoPipeline", "flowCore", "ggforce", "ggplot2", "ggrepel", "patchwork", "pracma", "reshape2", "rlang", "smacof", "transport", "withr"]
1499 },
1500 "CytoML": {
1501 "name": "CytoML",
1502 "version": "2.22.0",
1503 "sha256": "0my3gpmkqwrh198grwn75mh0wh84p9wpd559s1wgcrzl3ra47y1b",
1504 "depends": ["BH", "Biobase", "RBGL", "RProtoBufLib", "Rgraphviz", "Rhdf5lib", "XML", "cpp11", "cytolib", "data_table", "dplyr", "flowCore", "flowWorkspace", "ggcyto", "graph", "jsonlite", "openCyto", "tibble", "yaml"]
1505 },
1506 "CytoPipeline": {
1507 "name": "CytoPipeline",
1508 "version": "1.10.0",
1509 "sha256": "1s9341n7az9qs6m7l3m6ks17p46smwhzs861bvnjwr6r9lmi7gpy",
1510 "depends": ["BiocFileCache", "BiocParallel", "PeacoQC", "diagram", "flowAI", "flowCore", "ggcyto", "ggplot2", "jsonlite", "rlang", "scales", "withr"]
1511 },
1512 "CytoPipelineGUI": {
1513 "name": "CytoPipelineGUI",
1514 "version": "1.8.0",
1515 "sha256": "05x6llzzq4911ydkb0w02j3665bf2414s14nr3r0fs2jb3y7f58w",
1516 "depends": ["CytoPipeline", "flowCore", "ggplot2", "plotly", "shiny"]
1517 },
1518 "DAMEfinder": {
1519 "name": "DAMEfinder",
1520 "version": "1.22.0",
1521 "sha256": "0gd23z69k0sfds09q0lpz8g3ygj24c1j02ymn8wspq2k7xgivqv6",
1522 "depends": ["BiocGenerics", "Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "bumphunter", "cowplot", "ggplot2", "limma", "plyr", "readr", "reshape2", "stringr"]
1523 },
1524 "DAPAR": {
1525 "name": "DAPAR",
1526 "version": "1.42.0",
1527 "sha256": "13miss07m8lsnly8nj7mqi9hlwdk9075av9pfi1aahr6bhwx4r43",
1528 "depends": ["Biobase", "DAPARdata", "MSnbase", "foreach", "highcharter"]
1529 },
1530 "DART": {
1531 "name": "DART",
1532 "version": "1.58.0",
1533 "sha256": "0gswcf08ab1bp0vpx5m66ckd768smvav43h7q4l9plw7sg7pc7mv",
1534 "depends": ["igraph"]
1535 },
1536 "DCATS": {
1537 "name": "DCATS",
1538 "version": "1.8.0",
1539 "sha256": "00pc0dqf7v1pinbjw62rin9xn24j1bxxy2bf06cj1mwa8ws9fd9k",
1540 "depends": ["MCMCpack", "aod", "e1071", "matrixStats", "robustbase"]
1541 },
1542 "DECIPHER": {
1543 "name": "DECIPHER",
1544 "version": "3.6.0",
1545 "sha256": "0f344kiriy9q6hnji35fxhvcamb6ac40vwsw250qcj267ldj76wk",
1546 "depends": ["Biostrings", "DBI", "IRanges", "S4Vectors", "XVector"]
1547 },
1548 "DEFormats": {
1549 "name": "DEFormats",
1550 "version": "1.38.0",
1551 "sha256": "1xjqkv3xwslgm0ifiwcg96hqml7w6v47z8c2q4hf0dk2a9f3sljw",
1552 "depends": ["DESeq2", "GenomicRanges", "S4Vectors", "SummarizedExperiment", "checkmate", "data_table", "edgeR"]
1553 },
1554 "DEGraph": {
1555 "name": "DEGraph",
1556 "version": "1.62.0",
1557 "sha256": "0ynrw24wx9xhyixv17spkz34bxfx9596arhx4iafjf33pr3b39ys",
1558 "depends": ["KEGGgraph", "NCIgraph", "RBGL", "R_methodsS3", "R_utils", "Rgraphviz", "graph", "lattice", "mvtnorm", "rrcov"]
1559 },
1560 "DEGreport": {
1561 "name": "DEGreport",
1562 "version": "1.46.0",
1563 "sha256": "0hy8g1v296pjvvgczxkflxhza66fj4x265vljfqsa91zljwcr9lr",
1564 "depends": ["Biobase", "BiocGenerics", "ComplexHeatmap", "ConsensusClusterPlus", "DESeq2", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "broom", "circlize", "cluster", "cowplot", "dendextend", "dplyr", "edgeR", "ggdendro", "ggplot2", "ggrepel", "knitr", "logging", "magrittr", "psych", "reshape", "rlang", "scales", "stringi", "stringr", "tibble", "tidyr"]
1565 },
1566 "DEGseq": {
1567 "name": "DEGseq",
1568 "version": "1.64.0",
1569 "sha256": "00zsfy9fj89bkr997g9b1si1kvmi346v0xlxnzsassphc2pddfmi",
1570 "depends": ["qvalue"]
1571 },
1572 "DEP": {
1573 "name": "DEP",
1574 "version": "1.32.0",
1575 "sha256": "1lwj3jz7vkri1kqav7shzxh0y2qdv37f566ss4lm4ifnzihg3y43",
1576 "depends": ["ComplexHeatmap", "DT", "MSnbase", "RColorBrewer", "SummarizedExperiment", "assertthat", "circlize", "cluster", "dplyr", "fdrtool", "ggplot2", "ggrepel", "gridExtra", "imputeLCMD", "limma", "purrr", "readr", "rmarkdown", "shiny", "shinydashboard", "tibble", "tidyr", "vsn"]
1577 },
1578 "DEScan2": {
1579 "name": "DEScan2",
1580 "version": "1.30.0",
1581 "sha256": "0f2r8008mm1w6gwq6wi8gixwpa1fhcz7h5zarscsbkdyaqmblpqm",
1582 "depends": ["BiocGenerics", "BiocParallel", "ChIPpeakAnno", "DelayedArray", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rcpp", "RcppArmadillo", "S4Vectors", "Seqinfo", "SummarizedExperiment", "data_table", "glue", "plyr", "rtracklayer"]
1583 },
1584 "DESeq2": {
1585 "name": "DESeq2",
1586 "version": "1.50.0",
1587 "sha256": "18pjr7i0qnfn6h8g1laj6q0ncjmsgqg7jw8icrs35s9dzqy2nglp",
1588 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "MatrixGenerics", "Rcpp", "RcppArmadillo", "S4Vectors", "SummarizedExperiment", "ggplot2", "locfit", "matrixStats"]
1589 },
1590 "DESpace": {
1591 "name": "DESpace",
1592 "version": "2.2.0",
1593 "sha256": "1vzkzv18i04734ggdg8wrhbglwcjnn4pywambgz3956rimi8yiib",
1594 "depends": ["BiocGenerics", "BiocParallel", "Matrix", "S4Vectors", "SpatialExperiment", "SummarizedExperiment", "assertthat", "data_table", "dplyr", "edgeR", "ggforce", "ggnewscale", "ggplot2", "limma", "patchwork", "scales", "scuttle", "sf", "spatstat_explore", "spatstat_geom", "terra"]
1595 },
1596 "DEWSeq": {
1597 "name": "DEWSeq",
1598 "version": "1.24.0",
1599 "sha256": "194w9ky75zmkay98l41sn6129225acf2nlgd8mdvqh1w36l412sh",
1600 "depends": ["BiocGenerics", "BiocParallel", "DESeq2", "GenomicRanges", "R_utils", "S4Vectors", "Seqinfo", "SummarizedExperiment", "data_table"]
1601 },
1602 "DEXSeq": {
1603 "name": "DEXSeq",
1604 "version": "1.56.0",
1605 "sha256": "1pjy9yxw3w9689bdd5lc3qbxa9820vjdc5dls5jd23c90mmphsyh",
1606 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocParallel", "DESeq2", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "SummarizedExperiment", "biomaRt", "genefilter", "geneplotter", "hwriter", "statmod", "stringr"]
1607 },
1608 "DEqMS": {
1609 "name": "DEqMS",
1610 "version": "1.28.0",
1611 "sha256": "0vlglhsgyz8jchfn799navmya7zdr654sad26w0690qlnyzdsqbf",
1612 "depends": ["dplyr", "ggplot2", "limma", "matrixStats"]
1613 },
1614 "DEsingle": {
1615 "name": "DEsingle",
1616 "version": "1.30.0",
1617 "sha256": "1kg5ak77ip6ncyvf6v1wayf00knxb824xgdlbg56bvjr26ijfnwc",
1618 "depends": ["BiocParallel", "MASS", "Matrix", "VGAM", "bbmle", "gamlss", "maxLik", "pscl"]
1619 },
1620 "DEsubs": {
1621 "name": "DEsubs",
1622 "version": "1.36.0",
1623 "sha256": "0hmwnx0dpfpw6m2mcgy5ymplj6azfrk21nxmjnabpg7a8i61qj56",
1624 "depends": ["DESeq2", "EBSeq", "Matrix", "NBPSeq", "RBGL", "circlize", "edgeR", "ggplot2", "graph", "igraph", "jsonlite", "limma", "locfit", "pheatmap"]
1625 },
1626 "DExMA": {
1627 "name": "DExMA",
1628 "version": "1.18.0",
1629 "sha256": "1khhz4mfm1fr1v125hkslhsp85r0x1z2mrni3jrnjasv6nghy2ca",
1630 "depends": ["Biobase", "DExMAdata", "GEOquery", "RColorBrewer", "bnstruct", "impute", "limma", "pheatmap", "plyr", "scales", "snpStats", "sva", "swamp"]
1631 },
1632 "DFP": {
1633 "name": "DFP",
1634 "version": "1.68.0",
1635 "sha256": "0mhyry6i640hs4b05q99fyh07ark0n2i0xq53432y7v2q61gzahc",
1636 "depends": ["Biobase"]
1637 },
1638 "DFplyr": {
1639 "name": "DFplyr",
1640 "version": "1.4.0",
1641 "sha256": "1j1wqccxavzslg9mlkb6fdrzrzf6xzdjpwmgbd30y5n0y9gldd07",
1642 "depends": ["BiocGenerics", "S4Vectors", "dplyr", "rlang", "tidyselect"]
1643 },
1644 "DMCFB": {
1645 "name": "DMCFB",
1646 "version": "1.24.0",
1647 "sha256": "15yr4l1r5y1cf3s28nxpmdzak0akks2z4phmcn5dmmy5j7fzv9zz",
1648 "depends": ["BiocParallel", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "SummarizedExperiment", "arm", "benchmarkme", "data_table", "fastDummies", "matrixStats", "rtracklayer", "speedglm", "tibble"]
1649 },
1650 "DMCHMM": {
1651 "name": "DMCHMM",
1652 "version": "1.32.0",
1653 "sha256": "0s8nng5gqal4c7nn3m7z5kzggwgsji6jnzmr0mh233zpqz31kj2h",
1654 "depends": ["BiocParallel", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "calibrate", "fdrtool", "multcomp", "rtracklayer"]
1655 },
1656 "DMRScan": {
1657 "name": "DMRScan",
1658 "version": "1.32.0",
1659 "sha256": "0f4wmw9j7iwhwhbrdc8pbv5cb72yhz7w838k0xhv65sa92d9h93g",
1660 "depends": ["GenomicRanges", "IRanges", "MASS", "Matrix", "RcppRoll", "Seqinfo", "mvtnorm"]
1661 },
1662 "DMRcaller": {
1663 "name": "DMRcaller",
1664 "version": "1.42.0",
1665 "sha256": "0v1jylpj5phgjszy67b4q4d5ac31k4v3np27nvvlbckh7ga5bz0m",
1666 "depends": ["BSgenome", "BiocManager", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "InteractionSet", "Rcpp", "RcppRoll", "Rsamtools", "S4Vectors", "Seqinfo", "betareg", "inflection", "stringr"]
1667 },
1668 "DMRcate": {
1669 "name": "DMRcate",
1670 "version": "3.6.0",
1671 "sha256": "04hvb65i267365qgjmqbd2lbk5fxnn4r5vd37ncvbq0gn71qax7c",
1672 "depends": ["AnnotationHub", "ExperimentHub", "GenomicRanges", "Gviz", "IRanges", "S4Vectors", "Seqinfo", "SummarizedExperiment", "biomaRt", "bsseq", "edgeR", "limma", "minfi", "missMethyl", "plyr"]
1673 },
1674 "DNABarcodeCompatibility": {
1675 "name": "DNABarcodeCompatibility",
1676 "version": "1.26.0",
1677 "sha256": "0mjbnq9aka47qi212y4dk7vrwq9jldl68k3x06jdsl5j1xid120c",
1678 "depends": ["BH", "Rcpp", "dplyr", "numbers", "purrr", "stringr", "tidyr"]
1679 },
1680 "DNABarcodes": {
1681 "name": "DNABarcodes",
1682 "version": "1.40.0",
1683 "sha256": "0cvgbpimjl4wswq95d4zrxvfq9z6fl11lg70727l78xhd9vh3i4d",
1684 "depends": ["BH", "Matrix", "Rcpp"]
1685 },
1686 "DNAcopy": {
1687 "name": "DNAcopy",
1688 "version": "1.84.0",
1689 "sha256": "1z08nz7qawhh2rrq4sc725vm1pi86j6c4rw9fjpbivdh7wl36a6p",
1690 "depends": []
1691 },
1692 "DNAcycP2": {
1693 "name": "DNAcycP2",
1694 "version": "1.2.0",
1695 "sha256": "1cn4ifnc03qjfzw37ycn95bm2sc2pksyryl0v783yhvpbplfzbih",
1696 "depends": ["basilisk", "reticulate"]
1697 },
1698 "DNAfusion": {
1699 "name": "DNAfusion",
1700 "version": "1.12.0",
1701 "sha256": "14hf9fjr0fn8r5k853wc0fcfy6xjrpiz6269l058q9fqanwwml90",
1702 "depends": ["BiocBaseUtils", "BiocGenerics", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "TxDb_Hsapiens_UCSC_hg38_knownGene"]
1703 },
1704 "DNAshapeR": {
1705 "name": "DNAshapeR",
1706 "version": "1.38.0",
1707 "sha256": "0069dcaa6dyjqclmdcmfwp16nl7mbxcdvl6kqii6xx5q6ha4khyj",
1708 "depends": ["Biostrings", "GenomicRanges", "Rcpp", "fields"]
1709 },
1710 "DNEA": {
1711 "name": "DNEA",
1712 "version": "1.0.0",
1713 "sha256": "0fb16yraaxnp2ap4wk68vkr9ac3cgy37xjmkrsmwrjxiwfrmvmjm",
1714 "depends": ["BiocParallel", "Matrix", "SummarizedExperiment", "dplyr", "gdata", "glasso", "igraph", "janitor", "netgsa", "stringr"]
1715 },
1716 "DOSE": {
1717 "name": "DOSE",
1718 "version": "4.4.0",
1719 "sha256": "0d6lwlkinjf66snfxg3j85m12vw00nmc507px871bi9p4xq7zjld",
1720 "depends": ["AnnotationDbi", "BiocParallel", "GOSemSim", "fgsea", "ggplot2", "qvalue", "reshape2", "yulab_utils"]
1721 },
1722 "DOtools": {
1723 "name": "DOtools",
1724 "version": "1.0.0",
1725 "sha256": "1g78ljyr71x1v9srnz9m7v4gkc1dbyqgsbkaqfpdmvs5ybwxrkg3",
1726 "depends": ["DESeq2", "DropletUtils", "Matrix", "S4Vectors", "SCpubr", "Seurat", "SeuratObject", "SingleCellExperiment", "basilisk", "cli", "cowplot", "curl", "dplyr", "enrichR", "ggalluvial", "ggcorrplot", "ggiraphExtra", "ggplot2", "ggpubr", "ggtext", "magrittr", "openxlsx", "progress", "purrr", "reshape2", "reticulate", "rlang", "rstatix", "scCustomize", "scDblFinder", "scales", "tibble", "tidyr", "tidyverse", "zellkonverter"]
1727 },
1728 "DRIMSeq": {
1729 "name": "DRIMSeq",
1730 "version": "1.38.0",
1731 "sha256": "0ga00qvrlccawq9nl0vdpsd9gbqx1xcafdxflp7vpi85s04bmg48",
1732 "depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "edgeR", "ggplot2", "limma", "reshape2"]
1733 },
1734 "DSS": {
1735 "name": "DSS",
1736 "version": "2.58.0",
1737 "sha256": "0k9vw11xxdi1d2qjp7z9kwzhcqb2d80wi76xvmqnmrl810ni07a5",
1738 "depends": ["Biobase", "BiocParallel", "bsseq"]
1739 },
1740 "DTA": {
1741 "name": "DTA",
1742 "version": "2.56.0",
1743 "sha256": "0xvwa03kivly6617l4lbwz78xzhz5qn7f05pn9a1qxgg2fxxw2mf",
1744 "depends": ["LSD", "scatterplot3d"]
1745 },
1746 "DaMiRseq": {
1747 "name": "DaMiRseq",
1748 "version": "2.22.0",
1749 "sha256": "1gm0wd304gd6xp339z6977yx0iwn3zqqf249hw882yi059xj295s",
1750 "depends": ["DESeq2", "EDASeq", "FSelector", "FactoMineR", "Hmisc", "MASS", "RColorBrewer", "RSNNS", "SummarizedExperiment", "arm", "caret", "corrplot", "e1071", "edgeR", "ggplot2", "ineq", "kknn", "limma", "lubridate", "pheatmap", "pls", "plsVarSel", "plyr", "randomForest", "reshape2", "sva"]
1751 },
1752 "Damsel": {
1753 "name": "Damsel",
1754 "version": "1.6.0",
1755 "sha256": "08d2kpqrvs00l6j4dpibflzy55wpsfdqrxpnbb84dk6x85j0cr0r",
1756 "depends": ["AnnotationDbi", "Biostrings", "ComplexHeatmap", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "Rsamtools", "Rsubread", "dplyr", "edgeR", "ggbio", "ggplot2", "goseq", "magrittr", "patchwork", "plyranges", "reshape2", "rlang", "stringr", "tidyr"]
1757 },
1758 "DeMAND": {
1759 "name": "DeMAND",
1760 "version": "1.40.0",
1761 "sha256": "08pkxdhxzw2d4fx1r6h8b10bwkhhaipdr5fy6c5vh89z1lbjmxcg",
1762 "depends": ["KernSmooth"]
1763 },
1764 "DeMixT": {
1765 "name": "DeMixT",
1766 "version": "1.26.0",
1767 "sha256": "0nqalk74r8k1sr1wc3n60dp19crv8arp3xczv371c29wvhgfmqn8",
1768 "depends": ["DSS", "KernSmooth", "Rcpp", "SummarizedExperiment", "base64enc", "dendextend", "ggplot2", "knitr", "matrixStats", "matrixcalc", "psych", "rmarkdown", "sva", "truncdist"]
1769 },
1770 "DeconvoBuddies": {
1771 "name": "DeconvoBuddies",
1772 "version": "1.2.0",
1773 "sha256": "1q6zcp83yqnlifasz8dp37f9a6fh97fxlfjydm67gsqc7vcsiv7d",
1774 "depends": ["AnnotationHub", "BiocFileCache", "DelayedMatrixStats", "ExperimentHub", "MatrixGenerics", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "purrr", "rafalib", "reshape2", "scran", "spatialLIBD", "stringr", "tibble"]
1775 },
1776 "DeeDeeExperiment": {
1777 "name": "DeeDeeExperiment",
1778 "version": "1.0.0",
1779 "sha256": "05sycr3kv44w3x66s280vp1nz4i8pxflxqrw1lwffg087ssbyp23",
1780 "depends": ["DESeq2", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "cli", "edgeR", "limma"]
1781 },
1782 "DeepPINCS": {
1783 "name": "DeepPINCS",
1784 "version": "1.18.0",
1785 "sha256": "0p9hiqhv2kr44jw61bsg15ymxqzdxkq5vvywsgw2418428d3j2gp",
1786 "depends": ["CatEncoders", "PRROC", "keras", "matlab", "purrr", "rcdk", "reticulate", "stringdist", "tensorflow", "tokenizers", "ttgsea", "webchem"]
1787 },
1788 "DeepTarget": {
1789 "name": "DeepTarget",
1790 "version": "1.4.0",
1791 "sha256": "1fyr7y6bv4bgx6hsjac0zjh8h7i14qvxf6vhwnaj0kc5nprszzbn",
1792 "depends": ["BiocParallel", "depmap", "dplyr", "fgsea", "ggplot2", "ggpubr", "pROC", "readr", "stringr"]
1793 },
1794 "DegCre": {
1795 "name": "DegCre",
1796 "version": "1.6.0",
1797 "sha256": "056716y8ychdbac6mvyp99n3ak5afnxgyksa1b524jzwipc3w0k9",
1798 "depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "InteractionSet", "S4Vectors", "Seqinfo", "TxDb_Hsapiens_UCSC_hg38_knownGene", "org_Hs_eg_db", "plotgardener", "qvalue"]
1799 },
1800 "DegNorm": {
1801 "name": "DegNorm",
1802 "version": "1.20.0",
1803 "sha256": "1737fdfd5i80qh4dp21z5pq4d3xfzl79m59qwhmz40pljx98bl88",
1804 "depends": ["GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rcpp", "RcppArmadillo", "Rsamtools", "S4Vectors", "data_table", "doParallel", "foreach", "ggplot2", "heatmaply", "plotly", "plyr", "txdbmaker", "viridis"]
1805 },
1806 "DelayedArray": {
1807 "name": "DelayedArray",
1808 "version": "0.36.0",
1809 "sha256": "1x5qhgnwf89hmra4lvs0sa5mqz9rm45bmw4q1469zw1brazcp3gv",
1810 "depends": ["BiocGenerics", "IRanges", "Matrix", "MatrixGenerics", "S4Arrays", "S4Vectors", "SparseArray"]
1811 },
1812 "DelayedDataFrame": {
1813 "name": "DelayedDataFrame",
1814 "version": "1.26.0",
1815 "sha256": "1yqvpkps2kcfdaadnh52rmhqa0z37579i9f1ff86xablmzi9znfg",
1816 "depends": ["BiocGenerics", "DelayedArray", "S4Vectors"]
1817 },
1818 "DelayedMatrixStats": {
1819 "name": "DelayedMatrixStats",
1820 "version": "1.32.0",
1821 "sha256": "0ygp9p8lm19421ybqsrp0xz396cpf7b2vwk6hmrr5gxhxqqxyba5",
1822 "depends": ["DelayedArray", "IRanges", "Matrix", "MatrixGenerics", "S4Vectors", "SparseArray", "sparseMatrixStats"]
1823 },
1824 "DelayedRandomArray": {
1825 "name": "DelayedRandomArray",
1826 "version": "1.18.0",
1827 "sha256": "039m4n7vd56vgnf1nxfga3f7f4sd533qy3wjb77ly9pfs2jnb546",
1828 "depends": ["BH", "DelayedArray", "Rcpp", "SparseArray", "dqrng"]
1829 },
1830 "DelayedTensor": {
1831 "name": "DelayedTensor",
1832 "version": "1.16.0",
1833 "sha256": "1wzjdmqmrgakkzsdjj7qpd9r6i07skq3l7hxkj3qlrfxp91rgad2",
1834 "depends": ["BiocSingular", "DelayedArray", "DelayedRandomArray", "HDF5Array", "Matrix", "S4Arrays", "SparseArray", "einsum", "irlba", "rTensor"]
1835 },
1836 "DepInfeR": {
1837 "name": "DepInfeR",
1838 "version": "1.14.0",
1839 "sha256": "0pgxxlsa72h57592yrhz5n4i2332mphrjd32019vhiisligcadzr",
1840 "depends": ["BiocParallel", "glmnet", "matrixStats"]
1841 },
1842 "DepecheR": {
1843 "name": "DepecheR",
1844 "version": "1.26.0",
1845 "sha256": "063jx19fs7gx84ivsmfs47lw5i79037v4c31k50jfzbxnwb1bnnc",
1846 "depends": ["ClusterR", "FNN", "MASS", "Rcpp", "RcppEigen", "beanplot", "collapse", "doSNOW", "dplyr", "foreach", "ggplot2", "gmodels", "gplots", "matrixStats", "mixOmics", "moments", "reshape2", "robustbase", "viridis"]
1847 },
1848 "DiffBind": {
1849 "name": "DiffBind",
1850 "version": "3.20.0",
1851 "sha256": "1y2i85mcs4wgkl10ykmfhvikapb3kql7v4jwli99jlvi897xwjsq",
1852 "depends": ["BiocParallel", "DESeq2", "GenomicAlignments", "GenomicRanges", "GreyListChIP", "IRanges", "RColorBrewer", "Rcpp", "Rhtslib", "Rsamtools", "S4Vectors", "SummarizedExperiment", "amap", "apeglm", "ashr", "dplyr", "ggplot2", "ggrepel", "gplots", "lattice", "limma", "locfit", "systemPipeR"]
1853 },
1854 "DiffLogo": {
1855 "name": "DiffLogo",
1856 "version": "2.34.0",
1857 "sha256": "08wgvbjqwkrqdmh6xiyr1slvq4yasl70g6r8xlw11j1ipqrr37g4",
1858 "depends": ["cba"]
1859 },
1860 "DifferentialRegulation": {
1861 "name": "DifferentialRegulation",
1862 "version": "2.8.0",
1863 "sha256": "09vbnd9as1925m9h2dhxxg8zwrqnjpql1qvkdx7c7rqm9wfhm6bx",
1864 "depends": ["BANDITS", "MASS", "Matrix", "Rcpp", "RcppArmadillo", "SingleCellExperiment", "SummarizedExperiment", "data_table", "doParallel", "doRNG", "foreach", "ggplot2", "gridExtra", "tximport"]
1865 },
1866 "Dino": {
1867 "name": "Dino",
1868 "version": "1.16.0",
1869 "sha256": "1miqqyf792ijrc2b7rbwgl7yfbyng68wylip88230yik8jmdhdvp",
1870 "depends": ["BiocParallel", "BiocSingular", "Matrix", "S4Vectors", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "matrixStats", "scran"]
1871 },
1872 "DirichletMultinomial": {
1873 "name": "DirichletMultinomial",
1874 "version": "1.52.0",
1875 "sha256": "0mr7b6xvi841k2whmp1qwh6nys7fkd2d5m0zzsp5m76lq24hhjdn",
1876 "depends": ["BiocGenerics", "IRanges", "S4Vectors"]
1877 },
1878 "DiscoRhythm": {
1879 "name": "DiscoRhythm",
1880 "version": "1.26.0",
1881 "sha256": "0dgsfnw1zvf7m3z20wdakpv64yilq47lyj8cklkqs4kg2ks38cjc",
1882 "depends": ["BiocGenerics", "BiocStyle", "DT", "MetaCycle", "S4Vectors", "SummarizedExperiment", "UpSetR", "VennDiagram", "broom", "data_table", "dplyr", "ggExtra", "ggplot2", "gridExtra", "heatmaply", "kableExtra", "knitr", "magick", "matrixStats", "matrixTests", "plotly", "reshape2", "rmarkdown", "shiny", "shinyBS", "shinycssloaders", "shinydashboard", "shinyjs", "viridis", "zip"]
1883 },
1884 "DominoEffect": {
1885 "name": "DominoEffect",
1886 "version": "1.30.0",
1887 "sha256": "1i59118bqk25jqkjkg6ddc8xyls9dd2r15piw7a6rgf8d2hv395s",
1888 "depends": ["AnnotationDbi", "Biostrings", "GenomicRanges", "IRanges", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "biomaRt", "data_table", "pwalign"]
1889 },
1890 "Doscheda": {
1891 "name": "Doscheda",
1892 "version": "1.32.0",
1893 "sha256": "0dllqkqh9760hl9qjwqdz6npsprp48zw5rb4didj7ff13yl4nzbn",
1894 "depends": ["DT", "affy", "calibrate", "corrgram", "drc", "ggplot2", "gridExtra", "httr", "jsonlite", "limma", "matrixStats", "prodlim", "readxl", "reshape2", "shiny", "shinydashboard", "stringr", "vsn"]
1895 },
1896 "DriverNet": {
1897 "name": "DriverNet",
1898 "version": "1.50.0",
1899 "sha256": "1sy3jzbg2hh83s1w6qm9mi4qk3ppa5xzc8h59ylm0pr42mnhmfwg",
1900 "depends": []
1901 },
1902 "DropletUtils": {
1903 "name": "DropletUtils",
1904 "version": "1.30.0",
1905 "sha256": "18k2jlz9yk2fayk01q165cp0wr1sb3hq73q6fp0w3w669ykfz0a5",
1906 "depends": ["BH", "BiocGenerics", "BiocParallel", "DelayedArray", "DelayedMatrixStats", "GenomicRanges", "HDF5Array", "IRanges", "Matrix", "R_utils", "Rcpp", "Rhdf5lib", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "assorthead", "beachmat", "dqrng", "edgeR", "rhdf5", "scuttle"]
1907 },
1908 "DrugVsDisease": {
1909 "name": "DrugVsDisease",
1910 "version": "2.52.0",
1911 "sha256": "1dgj492s26sbmxs8ac36cv6w9g6d4ay7p56hy3d5smmk21r5fsj7",
1912 "depends": ["ArrayExpress", "BiocGenerics", "DrugVsDiseasedata", "GEOquery", "RUnit", "affy", "annotate", "biomaRt", "cMap2data", "hgu133a2_db", "hgu133a_db", "hgu133plus2_db", "limma", "qvalue", "xtable"]
1913 },
1914 "DspikeIn": {
1915 "name": "DspikeIn",
1916 "version": "1.0.0",
1917 "sha256": "0rdvkj2ncsvzj5zm2msq02aakx4g9yzsc63v873jk15y2ywncmsm",
1918 "depends": ["Biostrings", "DECIPHER", "DESeq2", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "data_table", "dplyr", "edgeR", "flextable", "ggalluvial", "ggnewscale", "ggplot2", "ggpubr", "ggraph", "ggrepel", "ggridges", "ggstar", "ggtree", "ggtreeExtra", "igraph", "limma", "matrixStats", "microbiome", "msa", "officer", "patchwork", "phangorn", "phyloseq", "randomForest", "reshape2", "rlang", "scales", "tibble", "tidyr", "xml2"]
1919 },
1920 "Dune": {
1921 "name": "Dune",
1922 "version": "1.22.0",
1923 "sha256": "17vqzbl0zvmg1ndv99812hqmr6m8s14mw8bsa0mlv2piqh3iz5hs",
1924 "depends": ["BiocParallel", "RColorBrewer", "SummarizedExperiment", "aricode", "dplyr", "gganimate", "ggplot2", "magrittr", "purrr", "tidyr"]
1925 },
1926 "DuplexDiscovereR": {
1927 "name": "DuplexDiscovereR",
1928 "version": "1.4.0",
1929 "sha256": "101ppsi4inl7c7np8aqchdr4kabqxpyvmr5g14akmyp5hdqy7jgc",
1930 "depends": ["Biostrings", "GenomicAlignments", "GenomicRanges", "Gviz", "InteractionSet", "dplyr", "ggsci", "igraph", "purrr", "rlang", "rtracklayer", "scales", "stringr", "tibble", "tidyr", "vctrs"]
1931 },
1932 "DynDoc": {
1933 "name": "DynDoc",
1934 "version": "1.88.0",
1935 "sha256": "09nf883xlqwjisyab3vryvrv33z7zllpqi1zppyndxygm524avbp",
1936 "depends": []
1937 },
1938 "EBImage": {
1939 "name": "EBImage",
1940 "version": "4.52.0",
1941 "sha256": "171c233hqpssqsf2j0ifmabnxg5q0ysdvz8s7wrld0xbxls1fyj2",
1942 "depends": ["BiocGenerics", "RCurl", "abind", "fftwtools", "htmltools", "htmlwidgets", "jpeg", "locfit", "png", "tiff"]
1943 },
1944 "EBSEA": {
1945 "name": "EBSEA",
1946 "version": "1.38.0",
1947 "sha256": "1qcflilq5abcymhdpzypdqs5y6r0wa4wbv4g17m4z22f0vag6qy9",
1948 "depends": ["DESeq2", "EmpiricalBrownsMethod"]
1949 },
1950 "EBSeq": {
1951 "name": "EBSeq",
1952 "version": "2.8.0",
1953 "sha256": "1d9hvmh7dx8alf11xh3pc7il0jfr5jsbqjn90rrarsmslbkys7la",
1954 "depends": ["BH", "Rcpp", "RcppEigen", "blockmodeling", "gplots", "testthat"]
1955 },
1956 "EBarrays": {
1957 "name": "EBarrays",
1958 "version": "2.74.0",
1959 "sha256": "12x2c3qvybiick7pk5cl9i3ndg1vgwkv08i6dgd8gqf83dvwylk1",
1960 "depends": ["Biobase", "cluster", "lattice"]
1961 },
1962 "EBcoexpress": {
1963 "name": "EBcoexpress",
1964 "version": "1.54.0",
1965 "sha256": "08smy75js91pfwl8vb6s97g8j7i7g5j8ycidfxcgdnf1i5nylkmh",
1966 "depends": ["EBarrays", "mclust", "minqa"]
1967 },
1968 "EDASeq": {
1969 "name": "EDASeq",
1970 "version": "2.44.0",
1971 "sha256": "1j8q66dba91pdc39khnfq4fdwky9w5lrvps5adl7xcqv73ryw59p",
1972 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocManager", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "ShortRead", "aroma_light", "biomaRt"]
1973 },
1974 "EDIRquery": {
1975 "name": "EDIRquery",
1976 "version": "1.10.0",
1977 "sha256": "1lj0h2hzfmil3zvsn1dr7k70pc4jlzvnn5k0f8pf6n9g1am2rrbn",
1978 "depends": ["GenomicRanges", "InteractionSet", "readr", "tibble", "tictoc"]
1979 },
1980 "EGAD": {
1981 "name": "EGAD",
1982 "version": "1.38.0",
1983 "sha256": "13xw27sjc4v0gc9ln7qfa8swwd3jqr0032nknfh1yr3zk8sz4sy8",
1984 "depends": ["Biobase", "GEOquery", "MASS", "RColorBrewer", "RCurl", "gplots", "igraph", "impute", "limma", "plyr", "zoo"]
1985 },
1986 "EGSEA": {
1987 "name": "EGSEA",
1988 "version": "1.38.0",
1989 "sha256": "1kmhld8fnd6cwxd0k7i9mzh8hq22s2n6n4gqg8nwpvgvw2i2h2v3",
1990 "depends": ["AnnotationDbi", "Biobase", "DT", "EGSEAdata", "GSVA", "HTMLUtils", "PADOG", "RColorBrewer", "edgeR", "gage", "ggplot2", "globaltest", "gplots", "htmlwidgets", "hwriter", "limma", "metap", "org_Hs_eg_db", "org_Mm_eg_db", "org_Rn_eg_db", "pathview", "plotly", "safe", "stringi", "topGO"]
1991 },
1992 "ELMER": {
1993 "name": "ELMER",
1994 "version": "2.33.1",
1995 "sha256": "1ajwq8amzif2sxyz11a8axbd4jibp3f7pzrcl9f9zbwz8l5h6jmx",
1996 "depends": ["ComplexHeatmap", "DelayedArray", "ELMER_data", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "Matrix", "MultiAssayExperiment", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TCGAbiolinks", "biomaRt", "circlize", "doParallel", "downloader", "dplyr", "ggplot2", "ggpubr", "ggrepel", "gridExtra", "lattice", "magrittr", "plotly", "plyr", "progress", "purrr", "readr", "reshape", "reshape2", "rmarkdown", "rtracklayer", "rvest", "scales", "stringr", "tibble", "tidyr", "xml2"]
1997 },
1998 "ELViS": {
1999 "name": "ELViS",
2000 "version": "1.2.0",
2001 "sha256": "0fj5x8iz4qp29rffh14cz71dn0kzw2rhvdxgr6l92ixa29l2bsnz",
2002 "depends": ["BiocGenerics", "ComplexHeatmap", "GenomicFeatures", "GenomicRanges", "IRanges", "circlize", "data_table", "dplyr", "ggplot2", "glue", "igraph", "magrittr", "memoise", "patchwork", "reticulate", "scales", "segclust2d", "stringr", "txdbmaker", "uuid", "zoo"]
2003 },
2004 "EMDomics": {
2005 "name": "EMDomics",
2006 "version": "2.40.0",
2007 "sha256": "16zfssk8f2id1vaklgvrk986jr0zzqzxacm439x29lnn2fkh4fkr",
2008 "depends": ["BiocParallel", "CDFt", "emdist", "ggplot2", "matrixStats", "preprocessCore"]
2009 },
2010 "ENmix": {
2011 "name": "ENmix",
2012 "version": "1.46.0",
2013 "sha256": "1zv7b8yfzn3mazfg2hyc20xpi8ayd0xwxz5wnd4ywjmnfagwqjwb",
2014 "depends": ["AnnotationHub", "Biobase", "ExperimentHub", "IRanges", "RPMM", "S4Vectors", "SummarizedExperiment", "doParallel", "dynamicTreeCut", "foreach", "genefilter", "geneplotter", "gplots", "gtools", "illuminaio", "impute", "irlba", "matrixStats", "minfi", "quadprog"]
2015 },
2016 "ERSSA": {
2017 "name": "ERSSA",
2018 "version": "1.28.0",
2019 "sha256": "1bj2djhvawy5kg059syg3sbwdjl092kf5vaxjh1zg204nn760fx0",
2020 "depends": ["BiocParallel", "DESeq2", "RColorBrewer", "apeglm", "edgeR", "ggplot2", "plyr"]
2021 },
2022 "EWCE": {
2023 "name": "EWCE",
2024 "version": "1.18.0",
2025 "sha256": "0i476appzbnv6gy8jhpwnfaq6dqhfpny56m7w2l7a2j6qgyifmva",
2026 "depends": ["BiocParallel", "DelayedArray", "HGNChelper", "Matrix", "RNOmni", "SingleCellExperiment", "SummarizedExperiment", "data_table", "dplyr", "ewceData", "ggplot2", "limma", "orthogene", "reshape2", "stringr"]
2027 },
2028 "EasyCellType": {
2029 "name": "EasyCellType",
2030 "version": "1.12.0",
2031 "sha256": "0c4x827v95dz9h3b632f3si3nz5fjqawzzhfkh9ralfhqfzpm9kq",
2032 "depends": ["AnnotationDbi", "BiocStyle", "clusterProfiler", "dplyr", "forcats", "ggplot2", "magrittr", "org_Hs_eg_db", "org_Mm_eg_db", "rlang", "vctrs"]
2033 },
2034 "EmpiricalBrownsMethod": {
2035 "name": "EmpiricalBrownsMethod",
2036 "version": "1.38.0",
2037 "sha256": "0ff4sqgg3j8m74li69p7b9rkckwfgkr2igy5k3iz485qq2g8iryg",
2038 "depends": []
2039 },
2040 "EnMCB": {
2041 "name": "EnMCB",
2042 "version": "1.22.0",
2043 "sha256": "1fnz58vc1j7zacwj12f045sachfbdy6apkd8b036gnqrdkf49c88",
2044 "depends": ["BiocFileCache", "Matrix", "boot", "e1071", "ggplot2", "glmnet", "igraph", "mboost", "rms", "survival", "survivalROC", "survivalsvm"]
2045 },
2046 "EnrichDO": {
2047 "name": "EnrichDO",
2048 "version": "1.4.0",
2049 "sha256": "1h36v3m4all9n05s9mwcidlz27rxawibdl1kanyf2s89a3h0jj9d",
2050 "depends": ["BiocGenerics", "Rgraphviz", "S4Vectors", "dplyr", "ggplot2", "graph", "hash", "magrittr", "pheatmap", "purrr", "tidyr"]
2051 },
2052 "EnrichedHeatmap": {
2053 "name": "EnrichedHeatmap",
2054 "version": "1.40.0",
2055 "sha256": "1pz5czpy4dhjxaamz7n7zvxz3s48jyk3rhy90pqil41i8zlql4hr",
2056 "depends": ["ComplexHeatmap", "GenomicRanges", "GetoptLong", "IRanges", "Rcpp", "circlize", "locfit", "matrixStats"]
2057 },
2058 "EnrichmentBrowser": {
2059 "name": "EnrichmentBrowser",
2060 "version": "2.40.0",
2061 "sha256": "0qvp3j5fxxy97v29qj8ywgq0s2x1s7n222rmhq2lyb8vxyc7i0rd",
2062 "depends": ["AnnotationDbi", "BiocFileCache", "BiocManager", "GO_db", "GSEABase", "KEGGREST", "KEGGgraph", "Rgraphviz", "S4Vectors", "SPIA", "SummarizedExperiment", "edgeR", "graph", "graphite", "hwriter", "limma", "pathview", "safe"]
2063 },
2064 "EpiCompare": {
2065 "name": "EpiCompare",
2066 "version": "1.14.0",
2067 "sha256": "1ca9vzlwpyiqv3y3f9j6ch0wv2545wiza54dp2iyn8cfhph8s67q",
2068 "depends": ["AnnotationHub", "BiocGenerics", "ChIPseeker", "GenomeInfoDb", "GenomicRanges", "IRanges", "Seqinfo", "data_table", "downloadthis", "genomation", "ggplot2", "htmltools", "plotly", "reshape2", "rmarkdown", "rtracklayer", "stringr"]
2069 },
2070 "EpiDISH": {
2071 "name": "EpiDISH",
2072 "version": "2.26.0",
2073 "sha256": "15p5qshjbas5fb3x2sdwpcxd9ps91y4089jjy8c12q7sail4c54q",
2074 "depends": ["MASS", "Matrix", "e1071", "locfdr", "matrixStats", "quadprog", "stringr"]
2075 },
2076 "EpiMix": {
2077 "name": "EpiMix",
2078 "version": "1.12.0",
2079 "sha256": "1swwxf3hq3wcn05q1yxy5djby7jn35plylwnli27rrfqqrvi05h5",
2080 "depends": ["AnnotationDbi", "AnnotationHub", "Biobase", "ELMER_data", "EpiMix_data", "ExperimentHub", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "RCurl", "RPMM", "R_matlab", "S4Vectors", "Seqinfo", "SummarizedExperiment", "biomaRt", "data_table", "doParallel", "doSNOW", "downloader", "dplyr", "foreach", "ggplot2", "impute", "limma", "plyr", "progress", "rlang", "tibble", "tidyr"]
2081 },
2082 "EpiTxDb": {
2083 "name": "EpiTxDb",
2084 "version": "1.22.0",
2085 "sha256": "185m3wvqji8qw3bc05cmpzki1df5i8kr7hw15dnpnpich9i0mi3r",
2086 "depends": ["AnnotationDbi", "BiocFileCache", "BiocGenerics", "Biostrings", "DBI", "GenomicFeatures", "GenomicRanges", "IRanges", "Modstrings", "RSQLite", "S4Vectors", "Seqinfo", "curl", "httr", "rex", "tRNAdbImport", "txdbmaker", "xml2"]
2087 },
2088 "EpipwR": {
2089 "name": "EpipwR",
2090 "version": "1.4.0",
2091 "sha256": "11rwbvskmx75cwbmq7c5s10vjwhgj2ibwy8g0zqvwlmsa2dynd4w",
2092 "depends": ["EpipwR_data", "ExperimentHub", "ggplot2"]
2093 },
2094 "EventPointer": {
2095 "name": "EventPointer",
2096 "version": "3.18.0",
2097 "sha256": "0zf4dc8pa5b93il4qpnbc6g9c7ir0rqhxa8w1vhghdwqswjb74ig",
2098 "depends": ["BSgenome", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "MASS", "Matrix", "RBGL", "S4Vectors", "SGSeq", "SummarizedExperiment", "abind", "affxparser", "cobs", "doParallel", "fgsea", "foreach", "glmnet", "graph", "igraph", "iterators", "limma", "lpSolve", "matrixStats", "nnls", "poibin", "prodlim", "qvalue", "rhdf5", "speedglm", "stringr", "tximport"]
2099 },
2100 "ExCluster": {
2101 "name": "ExCluster",
2102 "version": "1.28.0",
2103 "sha256": "1103xdpcv59nsb2wk5qg9dmw6x6nfp18b9d3c3dsmb5bbl4hyy57",
2104 "depends": ["GenomicRanges", "IRanges", "Rsubread", "matrixStats", "rtracklayer"]
2105 },
2106 "ExiMiR": {
2107 "name": "ExiMiR",
2108 "version": "2.52.0",
2109 "sha256": "12075cp6py3ns59gyj2snrp6yr7v0zxwnvmnzfprynixhiiqzw2z",
2110 "depends": ["Biobase", "affy", "affyio", "limma", "preprocessCore"]
2111 },
2112 "ExperimentHub": {
2113 "name": "ExperimentHub",
2114 "version": "3.0.0",
2115 "sha256": "1ghz228x3ijr003zldqh9b473wn8cc518w6iwzx03sgrxaq2s177",
2116 "depends": ["AnnotationHub", "BiocFileCache", "BiocGenerics", "BiocManager", "S4Vectors", "rappdirs"]
2117 },
2118 "ExperimentHubData": {
2119 "name": "ExperimentHubData",
2120 "version": "1.36.0",
2121 "sha256": "1bjqvlhmzznsvji8k5d24wqhkpr8bhafjhmsqbnd8m58k3nrx919",
2122 "depends": ["AnnotationHubData", "BiocGenerics", "BiocManager", "DBI", "ExperimentHub", "S4Vectors", "curl", "httr"]
2123 },
2124 "ExperimentSubset": {
2125 "name": "ExperimentSubset",
2126 "version": "1.20.0",
2127 "sha256": "1yw4ci223s5cc0kwz6frfp3wngws48bghxwx6r761n03wsxs4g2q",
2128 "depends": ["Matrix", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "TreeSummarizedExperiment"]
2129 },
2130 "ExploreModelMatrix": {
2131 "name": "ExploreModelMatrix",
2132 "version": "1.22.0",
2133 "sha256": "0mbgsq3kb5wz9dz75hq4bka69in08kcyii8hqpga09948ffgm03l",
2134 "depends": ["DT", "MASS", "S4Vectors", "cowplot", "dplyr", "ggplot2", "limma", "magrittr", "rintrojs", "rlang", "scales", "shiny", "shinydashboard", "shinyjs", "tibble", "tidyr"]
2135 },
2136 "ExpressionAtlas": {
2137 "name": "ExpressionAtlas",
2138 "version": "2.2.0",
2139 "sha256": "0zksi7r2r98kid5w785spshnw8pgw8za3snag9k5qmycryhwvwfr",
2140 "depends": ["Biobase", "BiocStyle", "RCurl", "S4Vectors", "SummarizedExperiment", "XML", "httr", "jsonlite", "limma", "xml2"]
2141 },
2142 "FEAST": {
2143 "name": "FEAST",
2144 "version": "1.18.0",
2145 "sha256": "0yraanabz295kj3xlcllfscb7lvjk8z95grym1y3zlvgjfv3q65i",
2146 "depends": ["BiocParallel", "SC3", "SingleCellExperiment", "SummarizedExperiment", "TSCAN", "irlba", "matrixStats", "mclust"]
2147 },
2148 "FELLA": {
2149 "name": "FELLA",
2150 "version": "1.30.0",
2151 "sha256": "09ahamrbzai0pw7pkd9dxcray8ziqp4x7vl7makkpig1x9vsq10n",
2152 "depends": ["KEGGREST", "Matrix", "igraph", "plyr"]
2153 },
2154 "FGNet": {
2155 "name": "FGNet",
2156 "version": "3.44.0",
2157 "sha256": "1g9r62pp4qcrmfc3g222p5rw8afap6m54k05j6bbasr8sx69m18g",
2158 "depends": ["RColorBrewer", "R_utils", "XML", "hwriter", "igraph", "plotrix", "png", "reshape2"]
2159 },
2160 "FISHalyseR": {
2161 "name": "FISHalyseR",
2162 "version": "1.44.0",
2163 "sha256": "016agx3dci46srbb82lnyk42cxxia0in06hk9f9s6gai0rd7rqxn",
2164 "depends": ["EBImage", "abind"]
2165 },
2166 "FLAMES": {
2167 "name": "FLAMES",
2168 "version": "2.4.0",
2169 "sha256": "0n0a8zlydmd03pd2ymdf5nafsc09y8glfgr31dag37y93xc7a9zs",
2170 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "ComplexHeatmap", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "MatrixGenerics", "RColorBrewer", "R_utils", "Rcpp", "Rhtslib", "Rsamtools", "S4Arrays", "S4Vectors", "Seqinfo", "ShortRead", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "abind", "bambu", "basilisk", "circlize", "cli", "cowplot", "crew", "dplyr", "ggbio", "ggplot2", "gridExtra", "igraph", "jsonlite", "magick", "magrittr", "readr", "reticulate", "rtracklayer", "scater", "scatterpie", "scran", "scuttle", "stringr", "testthat", "tibble", "tidyr", "tidyselect", "withr"]
2171 },
2172 "FRASER": {
2173 "name": "FRASER",
2174 "version": "2.6.0",
2175 "sha256": "1h9j04q0b956kikwlwzfgn6amd4wf56ybqim3r6vikmhqacm94l7",
2176 "depends": ["AnnotationDbi", "BBmisc", "BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "DelayedArray", "DelayedMatrixStats", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "HDF5Array", "IRanges", "OUTRIDER", "PRROC", "RColorBrewer", "RMTstat", "R_utils", "Rcpp", "RcppArmadillo", "Rsamtools", "Rsubread", "S4Vectors", "SummarizedExperiment", "VGAM", "biomaRt", "cowplot", "data_table", "extraDistr", "generics", "ggplot2", "ggrepel", "matrixStats", "pcaMethods", "pheatmap", "plotly", "pracma", "rhdf5", "tibble"]
2177 },
2178 "FRGEpistasis": {
2179 "name": "FRGEpistasis",
2180 "version": "1.46.0",
2181 "sha256": "18zjy8v0bjh0i9chmy390g70v33ni6flj1vfdanh3vrfbfk2m341",
2182 "depends": ["MASS", "fda"]
2183 },
2184 "FamAgg": {
2185 "name": "FamAgg",
2186 "version": "1.38.0",
2187 "sha256": "0i6h2clwylxnxc4dwqggpq7y3cncp9qp4n7l8ypkl20kaq3s676a",
2188 "depends": ["BiocGenerics", "Matrix", "gap", "igraph", "kinship2", "survey"]
2189 },
2190 "FastqCleaner": {
2191 "name": "FastqCleaner",
2192 "version": "1.28.0",
2193 "sha256": "1fdd89x18k00in855f11h6fj4m5kwkipanbf8zmrrnwkawm62cc1",
2194 "depends": ["Biostrings", "DT", "IRanges", "Rcpp", "S4Vectors", "ShortRead", "htmltools", "shiny", "shinyBS"]
2195 },
2196 "FeatSeekR": {
2197 "name": "FeatSeekR",
2198 "version": "1.10.0",
2199 "sha256": "0akq90c0hb5gbl35lnql3crr00k3dmigs65phs9c1i22wa2qqlqr",
2200 "depends": ["MASS", "SummarizedExperiment", "pheatmap", "pracma"]
2201 },
2202 "FilterFFPE": {
2203 "name": "FilterFFPE",
2204 "version": "1.20.0",
2205 "sha256": "11b46qwg6sq7q7vnq18pcnfpnjavs97azmg0034a214gg7f9kila",
2206 "depends": ["GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "doParallel", "foreach"]
2207 },
2208 "FindIT2": {
2209 "name": "FindIT2",
2210 "version": "1.16.0",
2211 "sha256": "0ld9xvy1r8a27alf4w368x9yvmwx8fy43yv0izp39y1x1jpvkqj8",
2212 "depends": ["BiocGenerics", "BiocParallel", "GenomicFeatures", "GenomicRanges", "IRanges", "MultiAssayExperiment", "S4Vectors", "Seqinfo", "SummarizedExperiment", "dplyr", "ggplot2", "ggrepel", "glmnet", "patchwork", "progress", "purrr", "qvalue", "rlang", "rtracklayer", "stringr", "tibble", "tidyr", "withr"]
2213 },
2214 "FinfoMDS": {
2215 "name": "FinfoMDS",
2216 "version": "1.0.0",
2217 "sha256": "0gr2vm0d0qkk6y8rdvyicf468d317ffdyzq7fdxcn5iv0dgci9wq",
2218 "depends": ["phyloseq"]
2219 },
2220 "FitHiC": {
2221 "name": "FitHiC",
2222 "version": "1.36.0",
2223 "sha256": "1s454gpagdcj4gz5nbgvip3nw1kpp95bi6db9y302yrmpwds8vpq",
2224 "depends": ["Rcpp", "data_table", "fdrtool"]
2225 },
2226 "FlowSOM": {
2227 "name": "FlowSOM",
2228 "version": "2.18.0",
2229 "sha256": "09a3s5aqp9kfvckf2mw8lj0q74b3wmbg1qnphrggdcilhhh107di",
2230 "depends": ["BiocGenerics", "ConsensusClusterPlus", "Rtsne", "XML", "colorRamps", "dplyr", "flowCore", "ggforce", "ggnewscale", "ggplot2", "ggpubr", "igraph", "magrittr", "rlang", "tidyr"]
2231 },
2232 "FuseSOM": {
2233 "name": "FuseSOM",
2234 "version": "1.12.0",
2235 "sha256": "1wavm6njapw7p5jvalghg981wgbgfrqfqhx6aqyvv2r5q14rkkwp",
2236 "depends": ["FCPS", "Rcpp", "S4Vectors", "SummarizedExperiment", "analogue", "cluster", "coop", "diptest", "fastcluster", "fpc", "ggplot2", "ggplotify", "ggpubr", "pheatmap", "proxy", "psych", "stringr"]
2237 },
2238 "G4SNVHunter": {
2239 "name": "G4SNVHunter",
2240 "version": "1.2.0",
2241 "sha256": "00zhnsnbz8c7nns2srapikwmrvp0vvf7mz3f881c6rxgvndhppc8",
2242 "depends": ["Biostrings", "GenomicRanges", "IRanges", "Rcpp", "RcppRoll", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "cowplot", "data_table", "dplyr", "ggdensity", "ggplot2", "ggpointdensity", "ggseqlogo", "magrittr", "openxlsx", "progress", "tidyr", "viridis"]
2243 },
2244 "GA4GHclient": {
2245 "name": "GA4GHclient",
2246 "version": "1.34.0",
2247 "sha256": "0w9bmfll450m4qrl984bzrjb8rnzr08z3zgkvbi7g2yf3dv1jg6q",
2248 "depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "VariantAnnotation", "dplyr", "httr", "jsonlite"]
2249 },
2250 "GA4GHshiny": {
2251 "name": "GA4GHshiny",
2252 "version": "1.32.0",
2253 "sha256": "00im5cspwvnks9dns9ncbzi8fv6q127yc58lfr3qsxgxbm6li017",
2254 "depends": ["AnnotationDbi", "BiocGenerics", "DT", "GA4GHclient", "GenomeInfoDb", "GenomicFeatures", "S4Vectors", "Seqinfo", "dplyr", "openxlsx", "purrr", "shiny", "shinyjs", "shinythemes", "tidyr"]
2255 },
2256 "GARS": {
2257 "name": "GARS",
2258 "version": "1.30.0",
2259 "sha256": "1kzmi8w91f976x7c7l4aj7qy2xydspphaggdgcylmkvh8d464kyp",
2260 "depends": ["DaMiRseq", "MLSeq", "SummarizedExperiment", "cluster", "ggplot2"]
2261 },
2262 "GAprediction": {
2263 "name": "GAprediction",
2264 "version": "1.36.0",
2265 "sha256": "10yxp3kkx7ky87q17n3n9dja8af6c61pmz25zrj74xkip43qhkna",
2266 "depends": ["Matrix", "glmnet"]
2267 },
2268 "GBScleanR": {
2269 "name": "GBScleanR",
2270 "version": "2.3.2",
2271 "sha256": "0pb85ybypa0i5dnqv0ywffdkp53l1knv512dc2a2z9kmjifg4l3l",
2272 "depends": ["Rcpp", "RcppParallel", "SeqArray", "expm", "gdsfmt", "ggplot2", "tidyr"]
2273 },
2274 "GCPtools": {
2275 "name": "GCPtools",
2276 "version": "1.0.0",
2277 "sha256": "1m4ljd33vg5ari4xq8x1qsmdp0232w8f7x140mdh1gvg545rjjf4",
2278 "depends": ["AnVILBase", "BiocBaseUtils", "dplyr", "httr", "rlang", "tibble", "tidyr"]
2279 },
2280 "GDCRNATools": {
2281 "name": "GDCRNATools",
2282 "version": "1.30.0",
2283 "sha256": "12za6x6im4cpdk2g9w2d6smj0hxbn7v43h4dxq9c6sm5hyn6fv3i",
2284 "depends": ["BiocParallel", "DESeq2", "DOSE", "DT", "GenomicDataCommons", "XML", "biomaRt", "clusterProfiler", "edgeR", "ggplot2", "gplots", "jsonlite", "limma", "org_Hs_eg_db", "pathview", "rjson", "shiny", "survival", "survminer"]
2285 },
2286 "GDSArray": {
2287 "name": "GDSArray",
2288 "version": "1.30.0",
2289 "sha256": "1cvpk3x7yh08dblndf963alz9wc8crfzy271hxiz143gwmgfhn36",
2290 "depends": ["BiocGenerics", "DelayedArray", "S4Vectors", "SNPRelate", "SeqArray", "gdsfmt"]
2291 },
2292 "GEM": {
2293 "name": "GEM",
2294 "version": "1.36.0",
2295 "sha256": "0dx4ldbhc7w2h599sd5mcsvj45m9i3xzm9vh1m0j1wa079gfmk14",
2296 "depends": ["ggplot2"]
2297 },
2298 "GENESIS": {
2299 "name": "GENESIS",
2300 "version": "2.40.0",
2301 "sha256": "1g0cilgak0538wlq35m187d6mi3byfb44kic230idmi13ybq2yjw",
2302 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "GWASTools", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "SNPRelate", "SeqArray", "SeqVarTools", "data_table", "gdsfmt", "igraph", "reshape2"]
2303 },
2304 "GENIE3": {
2305 "name": "GENIE3",
2306 "version": "1.32.0",
2307 "sha256": "0q48p119hg7x8w6m4xv0s9h6ii8334hq4dl32b4ffbdlmi41kia9",
2308 "depends": ["dplyr", "reshape2"]
2309 },
2310 "GEOfastq": {
2311 "name": "GEOfastq",
2312 "version": "1.18.0",
2313 "sha256": "132aky7zffvhzfnazvl8i3y82vvpipvm3kgdppbpjjiig4l3cz0q",
2314 "depends": ["RCurl", "doParallel", "foreach", "plyr", "rvest", "stringr", "xml2"]
2315 },
2316 "GEOmetadb": {
2317 "name": "GEOmetadb",
2318 "version": "1.72.0",
2319 "sha256": "0fhmcawv1lvbmkmfzyk0q83rcmiyc3m9visp4904nllv94zb4ir1",
2320 "depends": ["RSQLite", "R_utils"]
2321 },
2322 "GEOquery": {
2323 "name": "GEOquery",
2324 "version": "2.78.0",
2325 "sha256": "1rvvfyg7qz9sd02ymfs6006dmdm200aryliripnqkm6cdjzxd4mp",
2326 "depends": ["Biobase", "R_utils", "S4Vectors", "SummarizedExperiment", "curl", "data_table", "dplyr", "httr2", "limma", "magrittr", "readr", "rentrez", "rvest", "stringr", "tidyr", "xml2"]
2327 },
2328 "GEOsubmission": {
2329 "name": "GEOsubmission",
2330 "version": "1.62.0",
2331 "sha256": "1b2yx94ybc3rnbbwf7d70wbgq908k81xr9sbwb0aswjrsx551vfp",
2332 "depends": ["Biobase", "affy"]
2333 },
2334 "GEWIST": {
2335 "name": "GEWIST",
2336 "version": "1.54.0",
2337 "sha256": "12wj9f2lgacb157lzw9mn7d7nzy6kyiqzxrgkv0rj9lq5ng26bv8",
2338 "depends": ["car"]
2339 },
2340 "GGPA": {
2341 "name": "GGPA",
2342 "version": "1.22.0",
2343 "sha256": "0lqrxf0qshcn7gkhil0qsmf65n1aa52z5pxlayr28rwkn8sjllr4",
2344 "depends": ["GGally", "Rcpp", "RcppArmadillo", "matrixStats", "network", "scales", "sna"]
2345 },
2346 "GIGSEA": {
2347 "name": "GIGSEA",
2348 "version": "1.28.0",
2349 "sha256": "043ncc99w8a7pj04n17vcwrdq02f2636xqwcifrfaa0q7p0ir93w",
2350 "depends": ["MASS", "Matrix", "locfdr"]
2351 },
2352 "GLAD": {
2353 "name": "GLAD",
2354 "version": "2.74.0",
2355 "sha256": "1gqkr7bp8rrad8dq7jcmdda6604vnqg781wx7adpndwss0xi1zyh",
2356 "depends": ["aws"]
2357 },
2358 "GMRP": {
2359 "name": "GMRP",
2360 "version": "1.38.0",
2361 "sha256": "0xmf2rppnnn6lgxv1d88y52prqms2cryq31v4n9d3pvjk1899igj",
2362 "depends": ["GenomicRanges", "diagram", "plotrix"]
2363 },
2364 "GNET2": {
2365 "name": "GNET2",
2366 "version": "1.26.0",
2367 "sha256": "1s4iy7dwb82hgi08a08pjhmm29r4jhd8anbk11p15fax1pc3xhq9",
2368 "depends": ["DiagrammeR", "Rcpp", "SummarizedExperiment", "dplyr", "ggplot2", "igraph", "matrixStats", "reshape2", "xgboost"]
2369 },
2370 "GNOSIS": {
2371 "name": "GNOSIS",
2372 "version": "1.8.0",
2373 "sha256": "1m6p557jgwyr6ccglccw7ryxnkgalb18aralbmclmdfp6k65npfq",
2374 "depends": ["DT", "DescTools", "RColorBrewer", "cBioPortalData", "car", "compareGroups", "dashboardthemes", "fabricatr", "fontawesome", "maftools", "magrittr", "operator_tools", "partykit", "reshape2", "rpart", "rstatix", "shiny", "shinyWidgets", "shinycssloaders", "shinydashboard", "shinydashboardPlus", "shinyjs", "shinylogs", "shinymeta", "survival", "survminer", "tidyverse"]
2375 },
2376 "GOSemSim": {
2377 "name": "GOSemSim",
2378 "version": "2.36.0",
2379 "sha256": "0s5zpga9fjk5h8l8ql8zpyylqrfqfgy8zw9i60mlr8azifwq7hvk",
2380 "depends": ["AnnotationDbi", "DBI", "GO_db", "R_utils", "Rcpp", "digest", "rlang", "yulab_utils"]
2381 },
2382 "GOTHiC": {
2383 "name": "GOTHiC",
2384 "version": "1.46.0",
2385 "sha256": "0wvzzyff1v57sdj6dd7423gya9vrrfkhwmw8129dr0zsfvk9qwwr",
2386 "depends": ["BSgenome", "BiocGenerics", "BiocManager", "Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "ShortRead", "data_table", "ggplot2", "rtracklayer"]
2387 },
2388 "GOexpress": {
2389 "name": "GOexpress",
2390 "version": "1.44.0",
2391 "sha256": "0kdlqvgssakc67pgc39p3qbyhc43x9gmi3vyrjn97h37i49f0mhr",
2392 "depends": ["Biobase", "RColorBrewer", "RCurl", "biomaRt", "ggplot2", "gplots", "randomForest", "stringr"]
2393 },
2394 "GOfuncR": {
2395 "name": "GOfuncR",
2396 "version": "1.30.0",
2397 "sha256": "1rvvzj3maa6xvvs0r9l994zk5pjbxgfmflg8waqqm6d6rd4ls4dv",
2398 "depends": ["AnnotationDbi", "GenomicRanges", "IRanges", "Rcpp", "gtools", "mapplots", "vioplot"]
2399 },
2400 "GOpro": {
2401 "name": "GOpro",
2402 "version": "1.36.0",
2403 "sha256": "0ry7h5gzzbyfi74m33qvqb8v8fj0y16ysf3wfnjhf9jngj365856",
2404 "depends": ["AnnotationDbi", "BH", "GO_db", "IRanges", "MultiAssayExperiment", "Rcpp", "S4Vectors", "dendextend", "doParallel", "foreach", "org_Hs_eg_db"]
2405 },
2406 "GOstats": {
2407 "name": "GOstats",
2408 "version": "2.76.0",
2409 "sha256": "1424z2hgimhwhwbwzz82vdsrgcwyfacn4mxl26ms2mry5mff9m9g",
2410 "depends": ["AnnotationDbi", "AnnotationForge", "Biobase", "Category", "GO_db", "RBGL", "Rgraphviz", "annotate", "graph"]
2411 },
2412 "GPA": {
2413 "name": "GPA",
2414 "version": "1.22.0",
2415 "sha256": "0w8mgcx1yiixa81s8yavka7q5kaly3fm9vvbp4jnx7d3mv8r74nr",
2416 "depends": ["DT", "Rcpp", "ggplot2", "ggrepel", "plyr", "shiny", "shinyBS", "vegan"]
2417 },
2418 "GRENITS": {
2419 "name": "GRENITS",
2420 "version": "1.62.0",
2421 "sha256": "18hjfsx4a8fyv458l71q0hz0k1jg07g0nkfh2v80vk7plkplqz7k",
2422 "depends": ["Rcpp", "RcppArmadillo", "ggplot2", "reshape2"]
2423 },
2424 "GRaNIE": {
2425 "name": "GRaNIE",
2426 "version": "1.14.0",
2427 "sha256": "16alzawsgk7a6jn6vc3jj4csh9l97z9nsh4i4x2g1nm5wx5sq8ry",
2428 "depends": ["AnnotationHub", "Biostrings", "ComplexHeatmap", "DESeq2", "GenomeInfoDb", "GenomicRanges", "Matrix", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "biomaRt", "checkmate", "circlize", "colorspace", "data_table", "dplyr", "ensembldb", "forcats", "futile_logger", "ggplot2", "gridExtra", "igraph", "limma", "magrittr", "matrixStats", "patchwork", "progress", "readr", "reshape2", "rlang", "scales", "stringr", "tibble", "tidyr", "tidyselect", "topGO", "viridis"]
2429 },
2430 "GRmetrics": {
2431 "name": "GRmetrics",
2432 "version": "1.36.0",
2433 "sha256": "1irgiwfx6s7w413mgdidkn341qhxqn050bdmh4mf3bh3dpmlrqij",
2434 "depends": ["S4Vectors", "SummarizedExperiment", "drc", "ggplot2", "plotly"]
2435 },
2436 "GSALightning": {
2437 "name": "GSALightning",
2438 "version": "1.38.0",
2439 "sha256": "16sm2sa4jvwpcd0hndg5khi4lzrsywjk05qfa05l19lgxfrcyfss",
2440 "depends": ["Matrix", "data_table"]
2441 },
2442 "GSAR": {
2443 "name": "GSAR",
2444 "version": "1.44.0",
2445 "sha256": "0p190i2kqzz0515phsj8hp83h8bix2hw0lwy7li2ghm4p85lf51k",
2446 "depends": ["igraph"]
2447 },
2448 "GSCA": {
2449 "name": "GSCA",
2450 "version": "2.40.0",
2451 "sha256": "1d6c9lxri0j5j84yn0fhdqv7ddhgpa8j0ypf3blvq3afl2jm0rjj",
2452 "depends": ["RColorBrewer", "ggplot2", "gplots", "reshape2", "rhdf5", "shiny", "sp"]
2453 },
2454 "GSEABase": {
2455 "name": "GSEABase",
2456 "version": "1.72.0",
2457 "sha256": "1sxd159msf51x1wfd2v67ngbc0lj6a8vdrc027f1xryh4gnnryk9",
2458 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "XML", "annotate", "graph"]
2459 },
2460 "GSEABenchmarkeR": {
2461 "name": "GSEABenchmarkeR",
2462 "version": "1.30.0",
2463 "sha256": "0absc89fkhg1szjlc7brcw4nyvilp8w5h6yxq6gw1gx7z5k47gka",
2464 "depends": ["AnnotationDbi", "AnnotationHub", "Biobase", "BiocFileCache", "BiocParallel", "EnrichmentBrowser", "ExperimentHub", "KEGGandMetacoreDzPathwaysGEO", "KEGGdzPathwaysGEO", "S4Vectors", "SummarizedExperiment", "edgeR"]
2465 },
2466 "GSEAlm": {
2467 "name": "GSEAlm",
2468 "version": "1.70.0",
2469 "sha256": "0p29pvg0aaxarnlhr027031d191djscy2cl621rml40nd5dw5dyg",
2470 "depends": ["Biobase"]
2471 },
2472 "GSEAmining": {
2473 "name": "GSEAmining",
2474 "version": "1.20.0",
2475 "sha256": "1bljvni74vpbdf8n9b7yhh4r2wd4wr84rabinl8cr35jgipj1agv",
2476 "depends": ["dendextend", "dplyr", "ggplot2", "ggwordcloud", "gridExtra", "rlang", "stringr", "tibble", "tidytext"]
2477 },
2478 "GSRI": {
2479 "name": "GSRI",
2480 "version": "2.58.0",
2481 "sha256": "0j7vb5j9f3mdi42wap6qz2zd07aaymggw8sa7d7fj9inpr8jj2py",
2482 "depends": ["Biobase", "GSEABase", "fdrtool", "genefilter", "les"]
2483 },
2484 "GSReg": {
2485 "name": "GSReg",
2486 "version": "1.44.0",
2487 "sha256": "0f88hz0mqbp4pxgh7hwjav3dcjf2qw1gpfabziqdprm3xpkkfqc2",
2488 "depends": ["AnnotationDbi", "GenomicFeatures", "Homo_sapiens", "org_Hs_eg_db"]
2489 },
2490 "GSVA": {
2491 "name": "GSVA",
2492 "version": "2.4.0",
2493 "sha256": "169kikbzb5afgclcm73jgnrp2h6g5i9sckw2zkjjj797pc6vd1jz",
2494 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "BiocSingular", "DelayedArray", "DelayedMatrixStats", "GSEABase", "HDF5Array", "IRanges", "Matrix", "MatrixGenerics", "S4Arrays", "S4Vectors", "SingleCellExperiment", "SparseArray", "SpatialExperiment", "SummarizedExperiment", "cli", "sparseMatrixStats"]
2495 },
2496 "GSgalgoR": {
2497 "name": "GSgalgoR",
2498 "version": "1.20.0",
2499 "sha256": "1544lnv9jkcwdc7056dydpmydpkgyphv7pfyqd2wria13rm0vg2c",
2500 "depends": ["cluster", "doParallel", "foreach", "matchingR", "nsga2R", "proxy", "survival"]
2501 },
2502 "GUIDEseq": {
2503 "name": "GUIDEseq",
2504 "version": "1.40.0",
2505 "sha256": "1nm7bfg6s68m1p4il60cm0p1sfy9lqswispd1mlcbfmlqj7n7b74",
2506 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "CRISPRseek", "ChIPpeakAnno", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "data_table", "dplyr", "ggplot2", "hash", "limma", "matrixStats", "multtest", "openxlsx", "patchwork", "purrr", "pwalign", "rio", "rlang", "stringr", "tidyr"]
2507 },
2508 "GWAS_BAYES": {
2509 "name": "GWAS.BAYES",
2510 "version": "1.20.0",
2511 "sha256": "17q782b4qfs471vc8ivg64ika97698swramclfrqbhpk7444xq9k",
2512 "depends": ["GA", "MASS", "Matrix", "caret", "limma", "memoise"]
2513 },
2514 "GWASTools": {
2515 "name": "GWASTools",
2516 "version": "1.56.0",
2517 "sha256": "0lkv2ccibjh7mw3p4j17ir5c0kp96q6086wh6h9ida33mbbbjw7k",
2518 "depends": ["Biobase", "DBI", "DNAcopy", "GWASExactHW", "RSQLite", "data_table", "gdsfmt", "lmtest", "logistf", "quantsmooth", "sandwich", "survival"]
2519 },
2520 "GWENA": {
2521 "name": "GWENA",
2522 "version": "1.20.0",
2523 "sha256": "119ap7kdi9vrxi6v7rh7wmkfabz985jizjxhnnk2wc6crd3sajms",
2524 "depends": ["NetRep", "RColorBrewer", "SummarizedExperiment", "WGCNA", "cluster", "dplyr", "dynamicTreeCut", "ggplot2", "gprofiler2", "igraph", "magrittr", "matrixStats", "purrr", "rlist", "stringr", "tibble", "tidyr"]
2525 },
2526 "GateFinder": {
2527 "name": "GateFinder",
2528 "version": "1.30.0",
2529 "sha256": "0g0j96r0a1c4l2ns5cmvr8b1pdf6ph37mswbkjc25wdkykim1f5x",
2530 "depends": ["diptest", "flowCore", "flowFP", "mvoutlier", "splancs"]
2531 },
2532 "GenProSeq": {
2533 "name": "GenProSeq",
2534 "version": "1.14.0",
2535 "sha256": "1mrbj0adlvngchyk8jhqsykhwawhmq4sxybmj3nwi4zgr3ad9781",
2536 "depends": ["CatEncoders", "DeepPINCS", "keras", "mclust", "reticulate", "tensorflow", "ttgsea", "word2vec"]
2537 },
2538 "GeneBreak": {
2539 "name": "GeneBreak",
2540 "version": "1.40.0",
2541 "sha256": "0s4973b63rdcdci9gm6rp19rjd1zsknfyi7sp81jb3d0b3jgxhnj",
2542 "depends": ["CGHbase", "CGHcall", "GenomicRanges", "QDNAseq"]
2543 },
2544 "GeneExpressionSignature": {
2545 "name": "GeneExpressionSignature",
2546 "version": "1.56.0",
2547 "sha256": "0rzi04xbqhbyk1l9vcndd0abhi0qa58bgn5bdb214lphf9p2rp1k",
2548 "depends": ["Biobase"]
2549 },
2550 "GeneGA": {
2551 "name": "GeneGA",
2552 "version": "1.60.0",
2553 "sha256": "1ifni019hlsvf68ksm31fj0pn1455j22vq00c1368cjmnysbvclk",
2554 "depends": ["hash", "seqinr"]
2555 },
2556 "GeneMeta": {
2557 "name": "GeneMeta",
2558 "version": "1.82.0",
2559 "sha256": "18b5zkji6k6vaw42amhimkxnijrk3vff6bn3kyx9fvx70czv6yp3",
2560 "depends": ["Biobase", "genefilter"]
2561 },
2562 "GeneNetworkBuilder": {
2563 "name": "GeneNetworkBuilder",
2564 "version": "1.52.0",
2565 "sha256": "1l439fyqg49sz8c00h225xlc9jdd017bvhagws69hfadms2qlvca",
2566 "depends": ["RCy3", "Rcpp", "Rgraphviz", "XML", "graph", "htmlwidgets", "plyr", "rjson"]
2567 },
2568 "GeneOverlap": {
2569 "name": "GeneOverlap",
2570 "version": "1.46.0",
2571 "sha256": "05yf6h1swvmfgn5zkjrlq7w8kxyidi4nqygw0d65plkb655b6wav",
2572 "depends": ["RColorBrewer", "gplots"]
2573 },
2574 "GeneRegionScan": {
2575 "name": "GeneRegionScan",
2576 "version": "1.66.0",
2577 "sha256": "1m7a9sxaa9m7axn79l965p2bvqa0pfjr2az0mff1gqaw7b9pvbh2",
2578 "depends": ["Biobase", "Biostrings", "RColorBrewer", "S4Vectors", "affxparser"]
2579 },
2580 "GeneSelectMMD": {
2581 "name": "GeneSelectMMD",
2582 "version": "2.54.0",
2583 "sha256": "10xfc6cql49f5s169pmfnh82fgmwjvlmabq5bdrhzmpa3a5n5xzw",
2584 "depends": ["Biobase", "MASS", "limma"]
2585 },
2586 "GeneStructureTools": {
2587 "name": "GeneStructureTools",
2588 "version": "1.30.0",
2589 "sha256": "09wbbhrmvq3zxvx9xa087w5v17y8m5kn998bl0v1kbwlms0pnqf6",
2590 "depends": ["BSgenome_Mmusculus_UCSC_mm10", "Biostrings", "GenomicRanges", "Gviz", "IRanges", "S4Vectors", "data_table", "plyr", "rtracklayer", "stringdist", "stringr"]
2591 },
2592 "GeneticsPed": {
2593 "name": "GeneticsPed",
2594 "version": "1.72.0",
2595 "sha256": "0zx48p90k3kdjvz0aasr0zn2288c1wqzrs6s5p1npc7ddcx0wy98",
2596 "depends": ["MASS", "gdata", "genetics"]
2597 },
2598 "GenomAutomorphism": {
2599 "name": "GenomAutomorphism",
2600 "version": "1.12.0",
2601 "sha256": "190alhczdvhyq0rj94h3nwcp33hpw4r6hm9rgan2l2jak5yr6fwh",
2602 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "XVector", "data_table", "doParallel", "dplyr", "foreach", "matrixStats", "numbers"]
2603 },
2604 "GenomeInfoDb": {
2605 "name": "GenomeInfoDb",
2606 "version": "1.46.0",
2607 "sha256": "03mxzpz9pwhmg63is4pn5gbrkcphfj9nyzdpxymhy9s8nv3hzfd9",
2608 "depends": ["BiocGenerics", "IRanges", "S4Vectors", "Seqinfo", "UCSC_utils"]
2609 },
2610 "GenomicAlignments": {
2611 "name": "GenomicAlignments",
2612 "version": "1.46.0",
2613 "sha256": "18s65wfkb568fiqqxbg50qpjv2x1ryrj3zrmafqqsp7xv6da6zzj",
2614 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "cigarillo"]
2615 },
2616 "GenomicDataCommons": {
2617 "name": "GenomicDataCommons",
2618 "version": "1.33.1",
2619 "sha256": "0x4h82rqjiicxb1kfbg4a43yi620nrw3msw2vgfys7pyl1cmh3is",
2620 "depends": ["GenomicRanges", "IRanges", "dplyr", "httr", "jsonlite", "rappdirs", "readr", "rlang", "tibble", "tidyr", "xml2"]
2621 },
2622 "GenomicDistributions": {
2623 "name": "GenomicDistributions",
2624 "version": "1.18.0",
2625 "sha256": "18ifnqsh95yhc990bi4dnr9fd0hbr7jksvpwlxvh6am3lsrg9b8s",
2626 "depends": ["Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "broom", "data_table", "dplyr", "ggplot2", "plyr", "reshape2", "scales"]
2627 },
2628 "GenomicFeatures": {
2629 "name": "GenomicFeatures",
2630 "version": "1.62.0",
2631 "sha256": "0rszhpmfsvn5iz3gzr3z07r7ykpmk4cbmfnjf9k2z59knnn1x9gp",
2632 "depends": ["AnnotationDbi", "BiocGenerics", "Biostrings", "DBI", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "XVector", "rtracklayer"]
2633 },
2634 "GenomicFiles": {
2635 "name": "GenomicFiles",
2636 "version": "1.46.0",
2637 "sha256": "0mw8h491i20lq94r4dd4ky7ivn7ci722g314rdaphm2dvknkrda7",
2638 "depends": ["BiocBaseUtils", "BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "MatrixGenerics", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "rtracklayer"]
2639 },
2640 "GenomicInteractionNodes": {
2641 "name": "GenomicInteractionNodes",
2642 "version": "1.14.0",
2643 "sha256": "1fwl85smbprr7gdhgrwnr8dp0hr0xk5xqsycdzzi592nf1vz6imy",
2644 "depends": ["AnnotationDbi", "GO_db", "GenomicFeatures", "GenomicRanges", "IRanges", "RBGL", "S4Vectors", "Seqinfo", "graph"]
2645 },
2646 "GenomicInteractions": {
2647 "name": "GenomicInteractions",
2648 "version": "1.44.0",
2649 "sha256": "1kfmlznlagjxzvwpnk18b5f5612fflkm66m93gky6ppi65ppv7xp",
2650 "depends": ["Biobase", "BiocGenerics", "GenomicRanges", "Gviz", "IRanges", "InteractionSet", "Rsamtools", "S4Vectors", "Seqinfo", "data_table", "dplyr", "ggplot2", "gridExtra", "igraph", "rtracklayer", "stringr"]
2651 },
2652 "GenomicOZone": {
2653 "name": "GenomicOZone",
2654 "version": "1.24.0",
2655 "sha256": "13m5h8ychama0bg52mnd73yq3g3zp3mh445y9q9hc8pbwr6ybxiw",
2656 "depends": ["Ckmeans_1d_dp", "GenomicRanges", "IRanges", "Rdpack", "S4Vectors", "Seqinfo", "biomaRt", "ggbio", "ggplot2", "gridExtra", "lsr", "plyr"]
2657 },
2658 "GenomicPlot": {
2659 "name": "GenomicPlot",
2660 "version": "1.8.0",
2661 "sha256": "0nb1jl5fv2jn9mza0qxysczp5zas0xy3h61kmfjxkivqdnn0ga5b",
2662 "depends": ["BiocGenerics", "ComplexHeatmap", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RCAS", "Rsamtools", "Seqinfo", "VennDiagram", "circlize", "cowplot", "dplyr", "edgeR", "genomation", "ggplot2", "ggplotify", "ggpubr", "ggsci", "ggsignif", "plyranges", "rtracklayer", "scales", "tidyr", "txdbmaker", "viridis"]
2663 },
2664 "GenomicRanges": {
2665 "name": "GenomicRanges",
2666 "version": "1.62.0",
2667 "sha256": "0wsbl49c542k107cgczsw5dynnrrwk9hslks229zpvxlcvapmivv",
2668 "depends": ["BiocGenerics", "IRanges", "S4Vectors", "Seqinfo"]
2669 },
2670 "GenomicScores": {
2671 "name": "GenomicScores",
2672 "version": "2.22.0",
2673 "sha256": "02ij02npfcx97bapga1w3mfy7k6fkf203gsd5b5rf19ja79bq4nw",
2674 "depends": ["AnnotationHub", "Biobase", "BiocFileCache", "BiocGenerics", "BiocManager", "Biostrings", "DelayedArray", "GenomeInfoDb", "GenomicRanges", "HDF5Array", "IRanges", "S4Vectors", "Seqinfo", "XML", "httr", "rhdf5"]
2675 },
2676 "GenomicSuperSignature": {
2677 "name": "GenomicSuperSignature",
2678 "version": "1.18.0",
2679 "sha256": "04dmmmgzmzkwdrydg4a3wv0zna4imiv8by4fbs776gpas1cbpag0",
2680 "depends": ["Biobase", "BiocFileCache", "ComplexHeatmap", "S4Vectors", "SummarizedExperiment", "dplyr", "flextable", "ggplot2", "ggpubr", "irlba", "plotly"]
2681 },
2682 "GenomicTuples": {
2683 "name": "GenomicTuples",
2684 "version": "1.44.0",
2685 "sha256": "0c9b0vvwzm99qfx36nlz1b4nvnsjirdh22121w0wnsrn0x2xi398",
2686 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "Rcpp", "S4Vectors", "Seqinfo", "data_table"]
2687 },
2688 "GeoDiff": {
2689 "name": "GeoDiff",
2690 "version": "1.16.0",
2691 "sha256": "04jmzrz0y1yq6hqzvqp7wyv489xxswr2rv9ag4fvdcmgkzwikwnk",
2692 "depends": ["Biobase", "GeomxTools", "Matrix", "NanoStringNCTools", "Rcpp", "RcppArmadillo", "lme4", "plyr", "robust", "roptim", "testthat", "withr"]
2693 },
2694 "GeoTcgaData": {
2695 "name": "GeoTcgaData",
2696 "version": "2.10.0",
2697 "sha256": "1rkyzq2i4rk2rhppbzqppkgl2886fhkkzb7i6xyn4zmajw7jq2vk",
2698 "depends": ["SummarizedExperiment", "cqn", "data_table", "plyr", "topconfects"]
2699 },
2700 "GeomxTools": {
2701 "name": "GeomxTools",
2702 "version": "3.14.0",
2703 "sha256": "0i0dy14vchh53nsfdhslgkmcc64yiip6kj2mjsfmcyjffr8jwn8b",
2704 "depends": ["Biobase", "BiocGenerics", "EnvStats", "GGally", "NanoStringNCTools", "S4Vectors", "SeuratObject", "data_table", "dplyr", "ggplot2", "lmerTest", "readxl", "reshape2", "rjson", "rlang", "stringr"]
2705 },
2706 "GladiaTOX": {
2707 "name": "GladiaTOX",
2708 "version": "1.26.0",
2709 "sha256": "1ij5kqkm21da1193h5rq7ahif6rfsrgnv446l2cx9nlc1rfss99a",
2710 "depends": ["DBI", "RColorBrewer", "RCurl", "RJSONIO", "RMariaDB", "RSQLite", "XML", "brew", "data_table", "ggplot2", "ggrepel", "numDeriv", "stringr", "tidyr", "xtable"]
2711 },
2712 "Glimma": {
2713 "name": "Glimma",
2714 "version": "2.20.0",
2715 "sha256": "1icnw7f77vcgg4bk6scxg5qgcdhgy5kij38l3gxrm75gbp6xr23y",
2716 "depends": ["DESeq2", "S4Vectors", "SummarizedExperiment", "edgeR", "htmlwidgets", "jsonlite", "limma"]
2717 },
2718 "GloScope": {
2719 "name": "GloScope",
2720 "version": "2.0.0",
2721 "sha256": "0vkvy3kmkmwg9g003cjhlczchqj1pxmlfp8y93hhxbwv4i6hxwzd",
2722 "depends": ["BiocParallel", "FNN", "MASS", "RANN", "RColorBrewer", "SingleCellExperiment", "boot", "cluster", "ggplot2", "mclust", "mvnfast", "permute", "pheatmap", "rlang", "vegan"]
2723 },
2724 "GlobalAncova": {
2725 "name": "GlobalAncova",
2726 "version": "4.28.0",
2727 "sha256": "0r99pdfbvhfwlikz3lvz31q7xdfw7a51x9vwn79b2wwjkg36r6y8",
2728 "depends": ["AnnotationDbi", "Biobase", "GSEABase", "VGAM", "annotate", "corpcor", "dendextend", "globaltest"]
2729 },
2730 "GmicR": {
2731 "name": "GmicR",
2732 "version": "1.24.0",
2733 "sha256": "0zr05hzcqy8wz75zw0q6j5jnzcrbwllsiq8l3yhk2biyi85xi3l4",
2734 "depends": ["AnnotationDbi", "Category", "DT", "GOstats", "GSEABase", "WGCNA", "ape", "bnlearn", "data_table", "doParallel", "foreach", "gRain", "gRbase", "org_Hs_eg_db", "org_Mm_eg_db", "reshape2", "shiny"]
2735 },
2736 "GrafGen": {
2737 "name": "GrafGen",
2738 "version": "1.6.0",
2739 "sha256": "1lamgbykja2hjqvqbgkav9flbhlj6235afnda9w908x4zywi4hwc",
2740 "depends": ["GenomicRanges", "RColorBrewer", "cowplot", "dplyr", "ggplot2", "ggpubr", "plotly", "rlang", "scales", "shiny", "stringr"]
2741 },
2742 "GraphAT": {
2743 "name": "GraphAT",
2744 "version": "1.82.0",
2745 "sha256": "114zcxv9fq6ljhn6wqra99ls5in7dqz942s2d4rk8ls2w92nnfjc",
2746 "depends": ["MCMCpack", "graph"]
2747 },
2748 "GraphAlignment": {
2749 "name": "GraphAlignment",
2750 "version": "1.74.0",
2751 "sha256": "11dikrddkhgysi0528sn6qr7mmwwks1rdzyjygnbb1kyacf5m4bc",
2752 "depends": []
2753 },
2754 "GreyListChIP": {
2755 "name": "GreyListChIP",
2756 "version": "1.42.0",
2757 "sha256": "0gm1d021ik5k9dnvczagxdsrpfl85p4qzhbp1frar31ki15h3hli",
2758 "depends": ["BSgenome", "GenomicAlignments", "GenomicRanges", "MASS", "Rsamtools", "Seqinfo", "SummarizedExperiment", "rtracklayer"]
2759 },
2760 "Guitar": {
2761 "name": "Guitar",
2762 "version": "2.26.0",
2763 "sha256": "02lhisr6ical6yy7m7r4w3b4nfxy5dhfydkaqh2fhfr4rd3igw0v",
2764 "depends": ["AnnotationDbi", "GenomicFeatures", "GenomicRanges", "dplyr", "ggplot2", "knitr", "magrittr", "rtracklayer"]
2765 },
2766 "Gviz": {
2767 "name": "Gviz",
2768 "version": "1.54.0",
2769 "sha256": "0vljk50i5xgw31dgdxdjqxl2r3cvjm6423fz3iz80xbbax039mjs",
2770 "depends": ["AnnotationDbi", "BSgenome", "Biobase", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "XVector", "biomaRt", "biovizBase", "digest", "ensembldb", "lattice", "latticeExtra", "matrixStats", "rtracklayer"]
2771 },
2772 "HDF5Array": {
2773 "name": "HDF5Array",
2774 "version": "1.38.0",
2775 "sha256": "1qk3qpy3lha44h0d7xr30qvp9gvxh1xr8xqz34irnq8c758zlcmp",
2776 "depends": ["BiocGenerics", "DelayedArray", "IRanges", "Matrix", "S4Arrays", "S4Vectors", "SparseArray", "h5mread", "rhdf5"]
2777 },
2778 "HDTD": {
2779 "name": "HDTD",
2780 "version": "1.44.0",
2781 "sha256": "1qhvsrd50vxs16kkx0a60sb1jab88wnshi288n78dq8iz5kv52n4",
2782 "depends": ["Rcpp", "RcppArmadillo"]
2783 },
2784 "HELP": {
2785 "name": "HELP",
2786 "version": "1.68.0",
2787 "sha256": "1n0c5s2pr1xqr0amsaf6ibdria0hpk7aavw5x74j5h2lgy438irh",
2788 "depends": ["Biobase"]
2789 },
2790 "HEM": {
2791 "name": "HEM",
2792 "version": "1.82.0",
2793 "sha256": "0c78k48znjj9h5hbb4q8pamdjddcq7xpkc4isgvf6lr7ih9p26ka",
2794 "depends": ["Biobase"]
2795 },
2796 "HERON": {
2797 "name": "HERON",
2798 "version": "1.8.0",
2799 "sha256": "1s46g0l2yj7kxqw9bm0xj0ymxbbjhr2yq9zflapn5a0acnn764zv",
2800 "depends": ["GenomicRanges", "IRanges", "Matrix", "S4Vectors", "SummarizedExperiment", "cluster", "data_table", "harmonicmeanp", "limma", "matrixStats", "metap", "spdep"]
2801 },
2802 "HGC": {
2803 "name": "HGC",
2804 "version": "1.18.0",
2805 "sha256": "11ywqqpmfmjqasmzryqcqhrfsjd4whicxy0bcigy18g1fwr1aj83",
2806 "depends": ["Matrix", "RANN", "Rcpp", "RcppEigen", "ape", "dendextend", "dplyr", "ggplot2", "mclust", "patchwork"]
2807 },
2808 "HIBAG": {
2809 "name": "HIBAG",
2810 "version": "1.46.0",
2811 "sha256": "1qwq7z1b9w9fpaqwvizgzhlh1x1sb71frb5lmapa07v7vd2ma9l0",
2812 "depends": ["RcppParallel"]
2813 },
2814 "HIPPO": {
2815 "name": "HIPPO",
2816 "version": "1.22.0",
2817 "sha256": "19yhqi6558nkr7z7acpnz5ssbdwq40jaiklgmkrggp0ajgqzwgjj",
2818 "depends": ["Matrix", "Rtsne", "SingleCellExperiment", "dplyr", "ggplot2", "ggrepel", "gridExtra", "irlba", "magrittr", "reshape2", "rlang", "umap"]
2819 },
2820 "HIREewas": {
2821 "name": "HIREewas",
2822 "version": "1.28.0",
2823 "sha256": "15s30lyw9nj63iar93pad6ciccb0ak1iyhpvdj14hc8j03gbgplh",
2824 "depends": ["gplots", "quadprog"]
2825 },
2826 "HMMcopy": {
2827 "name": "HMMcopy",
2828 "version": "1.52.0",
2829 "sha256": "1crn45v9mfciw54vmh80zaqwmxky23ssgplabyp9an7mddzkiyjz",
2830 "depends": ["data_table"]
2831 },
2832 "HPAanalyze": {
2833 "name": "HPAanalyze",
2834 "version": "1.28.0",
2835 "sha256": "1mvn9gxlvsgy8688lrxa1an4mhxr6hhawqqqkxzwgnk68hra9n10",
2836 "depends": ["dplyr", "ggplot2", "gridExtra", "openxlsx", "tibble", "xml2"]
2837 },
2838 "HTSFilter": {
2839 "name": "HTSFilter",
2840 "version": "1.50.0",
2841 "sha256": "0fk74glws1gf07wz630afjfifvqn5gcacli01l3q5knwhf94x2an",
2842 "depends": ["Biobase", "BiocParallel", "DESeq2", "edgeR"]
2843 },
2844 "HTqPCR": {
2845 "name": "HTqPCR",
2846 "version": "1.64.0",
2847 "sha256": "1f725965zrmmpf5wxb2l05p8l5d7k9z7b26ac0gxk5m24hnhkmkr",
2848 "depends": ["Biobase", "RColorBrewer", "affy", "gplots", "limma"]
2849 },
2850 "HVP": {
2851 "name": "HVP",
2852 "version": "1.0.0",
2853 "sha256": "0j2alj0a976lj056lhikapw48kfcdd1xn08d5gclnnwhr0d0nif1",
2854 "depends": ["Matrix"]
2855 },
2856 "Harman": {
2857 "name": "Harman",
2858 "version": "1.38.0",
2859 "sha256": "028pj0gkky32kz78jfkzxc3q67y7f10sdjiqnf7j5l8y7y38mv7y",
2860 "depends": ["Ckmeans_1d_dp", "Rcpp", "matrixStats"]
2861 },
2862 "HarmonizR": {
2863 "name": "HarmonizR",
2864 "version": "1.8.0",
2865 "sha256": "0xzniy0z030zbzx90rg6bx4filv3dkzgxihb0lvnvhgrdg67mb8x",
2866 "depends": ["SummarizedExperiment", "doParallel", "foreach", "janitor", "limma", "plyr", "seriation", "sva"]
2867 },
2868 "Heatplus": {
2869 "name": "Heatplus",
2870 "version": "3.18.0",
2871 "sha256": "1y365hbvvpy785ir2fmzh6wzxvf24g5zh177a5yjhsbl9agmcxyf",
2872 "depends": ["RColorBrewer"]
2873 },
2874 "HelloRanges": {
2875 "name": "HelloRanges",
2876 "version": "1.36.0",
2877 "sha256": "1az2pvxi9jnbsjk9xva85mbwq95h0wpsp3w9a3cylwwjwmflrg4n",
2878 "depends": ["BSgenome", "BiocGenerics", "BiocIO", "Biostrings", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "docopt", "rtracklayer"]
2879 },
2880 "Herper": {
2881 "name": "Herper",
2882 "version": "1.20.0",
2883 "sha256": "0ascr9kfk6wxbg6hav0ygkxcb88cqg7fphfa5s43hpiqmkvx6h25",
2884 "depends": ["reticulate", "rjson", "withr"]
2885 },
2886 "HiCBricks": {
2887 "name": "HiCBricks",
2888 "version": "1.28.0",
2889 "sha256": "03fmkg629vsi38r93lxz1mqf38r051hy8l1djwmr6mcfmfcx5dgw",
2890 "depends": ["BiocParallel", "GenomicRanges", "IRanges", "R6", "RColorBrewer", "R_utils", "S4Vectors", "Seqinfo", "curl", "data_table", "digest", "ggplot2", "jsonlite", "readr", "reshape2", "rhdf5", "scales", "stringr", "tibble", "viridis"]
2891 },
2892 "HiCDCPlus": {
2893 "name": "HiCDCPlus",
2894 "version": "1.18.0",
2895 "sha256": "1mgdj692ds66c46qzqnhszlww59ab32sg1rq9vqhmf9y27vkcj4i",
2896 "depends": ["BSgenome", "Biostrings", "GenomeInfoDb", "GenomicInteractions", "GenomicRanges", "IRanges", "InteractionSet", "MASS", "R_utils", "Rcpp", "S4Vectors", "bbmle", "data_table", "dplyr", "pscl", "rlang", "rtracklayer", "tibble", "tidyr"]
2897 },
2898 "HiCDOC": {
2899 "name": "HiCDOC",
2900 "version": "1.12.0",
2901 "sha256": "1hd259kdg3w3czcr6fczdsabsbqi62ca2y9ym5brykxwh4ak6i5l",
2902 "depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "InteractionSet", "Rcpp", "S4Vectors", "Seqinfo", "SummarizedExperiment", "cowplot", "data_table", "ggplot2", "gridExtra", "gtools", "multiHiCcompare", "pbapply"]
2903 },
2904 "HiCExperiment": {
2905 "name": "HiCExperiment",
2906 "version": "1.10.0",
2907 "sha256": "1gx225p1xx576af9f996gaqqkqpiah8ayfgc9x2p449759jh2x7j",
2908 "depends": ["BiocGenerics", "BiocIO", "BiocParallel", "GenomicRanges", "IRanges", "InteractionSet", "Matrix", "S4Vectors", "Seqinfo", "dplyr", "rhdf5", "strawr", "vroom"]
2909 },
2910 "HiCParser": {
2911 "name": "HiCParser",
2912 "version": "1.2.0",
2913 "sha256": "17jf2br63q3lfw5ndv0r6pzqx73gc2djfzk5wvl8rbx2x5g8zvis",
2914 "depends": ["BiocGenerics", "GenomicRanges", "InteractionSet", "Rcpp", "S4Vectors", "Seqinfo", "SummarizedExperiment", "data_table", "gtools", "pbapply"]
2915 },
2916 "HiCPotts": {
2917 "name": "HiCPotts",
2918 "version": "1.0.0",
2919 "sha256": "1bx691rszn4qzisjha4k829a3pf7z268k0vqkbg20xqhqisfcw87",
2920 "depends": ["BSgenome", "BSgenome_Dmelanogaster_UCSC_dm6", "Biostrings", "GenomicRanges", "IRanges", "Rcpp", "RcppArmadillo", "S4Vectors", "rhdf5", "rtracklayer", "strawr"]
2921 },
2922 "HiCaptuRe": {
2923 "name": "HiCaptuRe",
2924 "version": "1.0.0",
2925 "sha256": "1h0dc584zqqj4h1k7h8d0y6950r15r1mbwdvsmv29kklpagxbd2j",
2926 "depends": ["BSgenome", "Biostrings", "GenomeInfoDb", "GenomicInteractions", "GenomicRanges", "IRanges", "InteractionSet", "S4Vectors", "UpSetR", "cli", "data_table", "dplyr", "ggVennDiagram", "ggplot2", "ggpubr", "gplots", "igraph", "memoise", "stringr", "tibble", "tidyr"]
2927 },
2928 "HiCcompare": {
2929 "name": "HiCcompare",
2930 "version": "1.32.0",
2931 "sha256": "1q8w2m588pvsnv907mpz2n9q64230m0ijy3wnvzi6iy4wgkcwh6g",
2932 "depends": ["BiocParallel", "GenomicRanges", "IRanges", "InteractionSet", "KernSmooth", "S4Vectors", "data_table", "dplyr", "ggplot2", "gridExtra", "gtools", "mgcv", "pheatmap", "rhdf5"]
2933 },
2934 "HiContacts": {
2935 "name": "HiContacts",
2936 "version": "1.12.0",
2937 "sha256": "1qanyvd68z3v6x6570hh54ppqmx3k9v8r2z0ykc5a1wa6xi9cwp1",
2938 "depends": ["BiocGenerics", "BiocIO", "BiocParallel", "GenomeInfoDb", "GenomicRanges", "HiCExperiment", "IRanges", "InteractionSet", "Matrix", "RSpectra", "S4Vectors", "SummarizedExperiment", "dplyr", "ggplot2", "ggrastr", "readr", "scales", "stringr", "tibble", "tidyr"]
2939 },
2940 "HiLDA": {
2941 "name": "HiLDA",
2942 "version": "1.24.0",
2943 "sha256": "15jh2brpk0kz15hra2h3fw5fygarxi5dgd6d1cmrbx4pxizg9lbc",
2944 "depends": ["BSgenome_Hsapiens_UCSC_hg19", "BiocGenerics", "Biostrings", "GenomicFeatures", "GenomicRanges", "R2jags", "Rcpp", "S4Vectors", "TxDb_Hsapiens_UCSC_hg19_knownGene", "XVector", "abind", "cowplot", "forcats", "ggplot2", "stringr", "tidyr"]
2945 },
2946 "HiTC": {
2947 "name": "HiTC",
2948 "version": "1.54.0",
2949 "sha256": "0jnqp4n0yzrvfbrs29hz8spyafqcz4c1r7iym089m260l5l93y3n",
2950 "depends": ["Biostrings", "GenomicRanges", "IRanges", "Matrix", "RColorBrewer", "Seqinfo", "rtracklayer"]
2951 },
2952 "HicAggR": {
2953 "name": "HicAggR",
2954 "version": "1.6.0",
2955 "sha256": "1dqbbd049slzzlypfsjswaqvxrq724smcm2d4sbjq82ngrlgi9wx",
2956 "depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "InteractionSet", "Matrix", "S4Vectors", "Seqinfo", "checkmate", "data_table", "dplyr", "ggplot2", "gridExtra", "purrr", "reshape", "rhdf5", "rlang", "rtracklayer", "strawr", "stringr", "tibble", "tidyr", "withr"]
2957 },
2958 "HilbertCurve": {
2959 "name": "HilbertCurve",
2960 "version": "2.4.0",
2961 "sha256": "0c9j2isy67012hyzfy8m30l900r9g4cfkcir1jvkcl3p8ndk74pj",
2962 "depends": ["GenomicRanges", "IRanges", "Rcpp", "circlize", "png", "polylabelr"]
2963 },
2964 "HilbertVis": {
2965 "name": "HilbertVis",
2966 "version": "1.68.0",
2967 "sha256": "0x7bvirqibj0bykhv4f1qji8mbrsm288l9d901jjbvrwd0nfmh04",
2968 "depends": ["lattice"]
2969 },
2970 "HilbertVisGUI": {
2971 "name": "HilbertVisGUI",
2972 "version": "1.68.0",
2973 "sha256": "0c5fvhplpqmap0nsc04mlmybb5d092y655lyj771b1hpp40yd0dh",
2974 "depends": ["HilbertVis"]
2975 },
2976 "HoloFoodR": {
2977 "name": "HoloFoodR",
2978 "version": "1.4.0",
2979 "sha256": "1y7q3kldwdmj57jd6wy24ss0fw254sy6794lllhd98r2crp7qqv9",
2980 "depends": ["MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "TreeSummarizedExperiment", "dplyr", "httr2", "jsonlite", "stringi"]
2981 },
2982 "HuBMAPR": {
2983 "name": "HuBMAPR",
2984 "version": "1.4.0",
2985 "sha256": "0frk061x9f1h5ypvnkqm1j940aqzysla6x095wll9f17vjl29zpx",
2986 "depends": ["dplyr", "httr2", "purrr", "rjsoncons", "rlang", "stringr", "tibble", "tidyr", "whisker"]
2987 },
2988 "HubPub": {
2989 "name": "HubPub",
2990 "version": "1.18.0",
2991 "sha256": "0vfjwncf9b9swngm360xfy7mblmw6bymqgs77v9qc3qd2wswydg8",
2992 "depends": ["BiocManager", "available", "aws_s3", "biocthis", "dplyr", "fs", "usethis"]
2993 },
2994 "HybridExpress": {
2995 "name": "HybridExpress",
2996 "version": "1.6.0",
2997 "sha256": "1awlw7q3c60qs507dy3dcvip3si2ds4qjpl9bc4fzy7wjnc2nfym",
2998 "depends": ["BiocParallel", "ComplexHeatmap", "DESeq2", "RColorBrewer", "SummarizedExperiment", "ggplot2", "patchwork", "rlang"]
2999 },
3000 "HybridMTest": {
3001 "name": "HybridMTest",
3002 "version": "1.54.0",
3003 "sha256": "0cyzag5b1c5i6dpykpgl08dlgsdqz3pwfz9yq6ycy0yv9i78hqi5",
3004 "depends": ["Biobase", "MASS", "fdrtool", "survival"]
3005 },
3006 "IFAA": {
3007 "name": "IFAA",
3008 "version": "1.12.0",
3009 "sha256": "1pyq3k6v7f6a1993mnp1g45l6yp2yarzazkvvfq42qccgqx37r60",
3010 "depends": ["DescTools", "HDCI", "Matrix", "MatrixExtra", "S4Vectors", "SummarizedExperiment", "doParallel", "doRNG", "foreach", "glmnet", "mathjaxr", "parallelly", "stringr"]
3011 },
3012 "IHW": {
3013 "name": "IHW",
3014 "version": "1.38.0",
3015 "sha256": "02ni484hfw9r76shdq1hchlr11i6h6c5p620ybqfw6vk0cr6nb6g",
3016 "depends": ["BiocGenerics", "fdrtool", "lpsymphony", "slam"]
3017 },
3018 "ILoReg": {
3019 "name": "ILoReg",
3020 "version": "1.20.0",
3021 "sha256": "1bik7wni596n7vhxzx81xp41sadqs8ynmm6d4mxyya82qyymvzj9",
3022 "depends": ["DescTools", "LiblineaR", "Matrix", "RSpectra", "Rtsne", "S4Vectors", "SingleCellExperiment", "SparseM", "SummarizedExperiment", "aricode", "cluster", "cowplot", "dendextend", "doRNG", "doSNOW", "dplyr", "fastcluster", "foreach", "ggplot2", "parallelDist", "pheatmap", "plyr", "reshape2", "scales", "umap"]
3023 },
3024 "IMMAN": {
3025 "name": "IMMAN",
3026 "version": "1.30.0",
3027 "sha256": "1fwvc3x8cir66dp414f0x0d1i5c15nyi8zvb108zycl7m411hk89",
3028 "depends": ["STRINGdb", "igraph", "pwalign", "seqinr"]
3029 },
3030 "IMPCdata": {
3031 "name": "IMPCdata",
3032 "version": "1.46.0",
3033 "sha256": "0k9wn6daydbpsxlflc395iimghcq20ik42sf8fsvm6kvzkmq388p",
3034 "depends": ["rjson"]
3035 },
3036 "INDEED": {
3037 "name": "INDEED",
3038 "version": "2.24.0",
3039 "sha256": "0s5crvplgalw394x8fknpicnxipg09051ib0jbbwix1xb0r68car",
3040 "depends": ["devtools", "glasso", "igraph", "visNetwork"]
3041 },
3042 "INPower": {
3043 "name": "INPower",
3044 "version": "1.46.0",
3045 "sha256": "15p46b8wgwmv289kg5hw97inigq49jyb90y9klg6fqv8rwlghpxm",
3046 "depends": ["mvtnorm"]
3047 },
3048 "INSPEcT": {
3049 "name": "INSPEcT",
3050 "version": "1.40.0",
3051 "sha256": "1wfnwrgnpsrvavqdbvj57llgjf0j7yljpyhlbxbp0gbmxs9i1bnf",
3052 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "DESeq2", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "KernSmooth", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TxDb_Mmusculus_UCSC_mm9_knownGene", "deSolve", "pROC", "plgem", "readxl", "rootSolve", "rtracklayer", "shiny"]
3053 },
3054 "INTACT": {
3055 "name": "INTACT",
3056 "version": "1.10.0",
3057 "sha256": "1hlwmy4fmvrw9v3wr02jjrlj9xmdkvsd1dq4h13rfbdcfkbisxla",
3058 "depends": ["SQUAREM", "bdsmatrix", "ggplot2", "numDeriv", "tidyr"]
3059 },
3060 "IONiseR": {
3061 "name": "IONiseR",
3062 "version": "2.34.0",
3063 "sha256": "1zz8sfjbimdmjq3dv6jpsvw8yf8yig8656rdmp30xh4407ks4br6",
3064 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "ShortRead", "XVector", "bit64", "dplyr", "ggplot2", "magrittr", "rhdf5", "stringr", "tibble", "tidyr"]
3065 },
3066 "IPO": {
3067 "name": "IPO",
3068 "version": "1.36.0",
3069 "sha256": "147554d7jg47hm1jawa4wg9fzv7z00kyxw8babr6r6q0qdz78il7",
3070 "depends": ["BiocParallel", "CAMERA", "rsm", "xcms"]
3071 },
3072 "IRanges": {
3073 "name": "IRanges",
3074 "version": "2.44.0",
3075 "sha256": "0hjhc244p67gnlg2f1x71p6rypmkggn1sqp8r8psw1aq9355aki4",
3076 "depends": ["BiocGenerics", "S4Vectors"]
3077 },
3078 "ISAnalytics": {
3079 "name": "ISAnalytics",
3080 "version": "1.20.0",
3081 "sha256": "1b6q0cx3nvklp5458gs8qb33d0fs362y9sp90snjpajs52n07ilw",
3082 "depends": ["DT", "bslib", "data_table", "datamods", "dplyr", "forcats", "fs", "ggplot2", "ggrepel", "glue", "lifecycle", "lubridate", "purrr", "readr", "readxl", "rlang", "shiny", "shinyWidgets", "stringr", "tibble", "tidyr", "vegan"]
3083 },
3084 "ISLET": {
3085 "name": "ISLET",
3086 "version": "1.12.0",
3087 "sha256": "0snwx7q5069afg31y4k20d6qy4ygdp6bz5xprj3wxkm25vmc8pkk",
3088 "depends": ["BiocGenerics", "BiocParallel", "Matrix", "SummarizedExperiment", "abind", "lme4", "nnls", "purrr"]
3089 },
3090 "ISoLDE": {
3091 "name": "ISoLDE",
3092 "version": "1.38.0",
3093 "sha256": "0mfijii5fa9f6n94xrwjlp0wj3d21d777rh9gbrx42smp0zqa165",
3094 "depends": []
3095 },
3096 "ITALICS": {
3097 "name": "ITALICS",
3098 "version": "2.70.0",
3099 "sha256": "1rvj1wnlr4534fwxm9qngn1nlmm2s3lrq15h4fh2xk0rwvshdksz",
3100 "depends": ["DBI", "GLAD", "ITALICSData", "affxparser", "oligo", "oligoClasses", "pd_mapping50k_xba240"]
3101 },
3102 "IVAS": {
3103 "name": "IVAS",
3104 "version": "2.30.0",
3105 "sha256": "0wzcrcq9rdi93fry36q17lm80nsrqwccqbk57sapjb2rfdbymc7c",
3106 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocParallel", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "Seqinfo", "doParallel", "foreach", "ggfortify", "ggplot2", "lme4"]
3107 },
3108 "IWTomics": {
3109 "name": "IWTomics",
3110 "version": "1.33.0",
3111 "sha256": "048vwzidmpzbbl3ymqc6in7xlhj2gcq35gmm88kl2knfc04i3qg5",
3112 "depends": ["GenomicRanges", "IRanges", "KernSmooth", "S4Vectors", "fda", "gtable"]
3113 },
3114 "Ibex": {
3115 "name": "Ibex",
3116 "version": "1.0.0",
3117 "sha256": "1x97y9ilnpq3qj2ynfblgr0xjbrq4ayimgjsbs1wbg2p09l14b7b",
3118 "depends": ["Matrix", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "basilisk", "immApex", "reticulate", "rlang", "scRepertoire", "tensorflow"]
3119 },
3120 "Icens": {
3121 "name": "Icens",
3122 "version": "1.82.0",
3123 "sha256": "1w7bivsbp6l6nwvgqbx9rgw9v21mrs0lwvxwydmqgfk8z346f2ij",
3124 "depends": ["survival"]
3125 },
3126 "IdeoViz": {
3127 "name": "IdeoViz",
3128 "version": "1.46.0",
3129 "sha256": "13f53pp0wdmlsapj03yg7kqf5n2qpbxr7iz7p7wgv1ljv6jri0ds",
3130 "depends": ["Biobase", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "rtracklayer"]
3131 },
3132 "IgGeneUsage": {
3133 "name": "IgGeneUsage",
3134 "version": "1.24.0",
3135 "sha256": "1fdmmqs4jsh482c7q5m49p39ln8aw6v19n87sdm6l93d4rlzmj5q",
3136 "depends": ["BH", "Rcpp", "RcppEigen", "RcppParallel", "StanHeaders", "SummarizedExperiment", "reshape2", "rstan", "rstantools", "tidyr"]
3137 },
3138 "InPAS": {
3139 "name": "InPAS",
3140 "version": "2.18.0",
3141 "sha256": "1lw65cizag8ng79ycr0rfvbgg7913dk4297wr0mhzbli5f9jh788",
3142 "depends": ["AnnotationDbi", "BSgenome", "Biobase", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "Seqinfo", "batchtools", "cleanUpdTSeq", "depmixS4", "dplyr", "flock", "future", "future_apply", "ggplot2", "limma", "magrittr", "parallelly", "plyranges", "preprocessCore", "readr", "reshape2"]
3143 },
3144 "InTAD": {
3145 "name": "InTAD",
3146 "version": "1.30.0",
3147 "sha256": "15g67ivr7f765274lyrjjddsm0j8laj56cv1jai054cp2wms8cxk",
3148 "depends": ["Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "ggplot2", "ggpubr", "mclust", "qvalue", "rtracklayer"]
3149 },
3150 "Informeasure": {
3151 "name": "Informeasure",
3152 "version": "1.20.0",
3153 "sha256": "1l70grlg9cb781hlphbdb3g2zhni566lbfy8nhp493lshx6pjdpx",
3154 "depends": ["entropy"]
3155 },
3156 "IntEREst": {
3157 "name": "IntEREst",
3158 "version": "1.34.0",
3159 "sha256": "0nrzwa74nsyrcyjcalbpr05xb8njadwmh5xwmhiv5bcg8q4qbhyw",
3160 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "DBI", "DESeq2", "DEXSeq", "GenomicAlignments", "GenomicFeatures", "GenomicFiles", "GenomicRanges", "IRanges", "RMariaDB", "Rsamtools", "S4Vectors", "SummarizedExperiment", "edgeR", "seqLogo", "seqinr", "txdbmaker"]
3161 },
3162 "InterCellar": {
3163 "name": "InterCellar",
3164 "version": "2.16.0",
3165 "sha256": "0h7h5h11xhxq9879y4h61lk8ymwkz7nl5236blqy58mardh31ngl",
3166 "depends": ["ComplexHeatmap", "DT", "biomaRt", "circlize", "colorspace", "colourpicker", "config", "data_table", "dendextend", "dplyr", "factoextra", "fmsb", "fs", "ggplot2", "golem", "htmltools", "htmlwidgets", "igraph", "plotly", "plyr", "readxl", "rlang", "scales", "shiny", "shinyFeedback", "shinyFiles", "shinyalert", "shinycssloaders", "shinydashboard", "signal", "tibble", "tidyr", "umap", "visNetwork", "wordcloud2"]
3167 },
3168 "InteractionSet": {
3169 "name": "InteractionSet",
3170 "version": "1.38.0",
3171 "sha256": "0n2gncrb9ghvg4nx1dykyhq17vxzhjzj7va9r6iwpcmgyizpph5a",
3172 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "S4Vectors", "Seqinfo", "SummarizedExperiment"]
3173 },
3174 "InteractiveComplexHeatmap": {
3175 "name": "InteractiveComplexHeatmap",
3176 "version": "1.18.0",
3177 "sha256": "1fqkrf3mwfxd1sf813vxx23nj1zh4la43byxiglc4adf6s8mh67p",
3178 "depends": ["ComplexHeatmap", "GetoptLong", "IRanges", "RColorBrewer", "S4Vectors", "clisymbols", "digest", "fontawesome", "htmltools", "jsonlite", "kableExtra", "shiny", "svglite"]
3179 },
3180 "IntramiRExploreR": {
3181 "name": "IntramiRExploreR",
3182 "version": "1.32.0",
3183 "sha256": "0yj9x04zbgh5k6d1clmmdmmj6jc9fa4492q54bjzj5kvgxrlfp55",
3184 "depends": ["FGNet", "igraph", "knitr"]
3185 },
3186 "IsoBayes": {
3187 "name": "IsoBayes",
3188 "version": "1.8.0",
3189 "sha256": "0xgy7gnn6gngayas864wqs86ih0jkgirz9bvaxj3jmnd0rv84maz",
3190 "depends": ["HDInterval", "Rcpp", "RcppArmadillo", "S4Vectors", "SummarizedExperiment", "data_table", "doParallel", "doRNG", "foreach", "ggplot2", "glue", "iterators"]
3191 },
3192 "IsoCorrectoR": {
3193 "name": "IsoCorrectoR",
3194 "version": "1.28.0",
3195 "sha256": "1h76d3pmx7fzprvkb2rs9zcdss49p0zpkq5rj4ci4rv7pzf8dp53",
3196 "depends": ["WriteXLS", "dplyr", "magrittr", "pracma", "quadprog", "readr", "readxl", "stringr", "tibble"]
3197 },
3198 "IsoCorrectoRGUI": {
3199 "name": "IsoCorrectoRGUI",
3200 "version": "1.26.0",
3201 "sha256": "0m79392xz8snhmc3mngpzv80dzl76j4mhpg9m09jpdj5y168mvdy",
3202 "depends": ["IsoCorrectoR", "readxl", "tcltk2"]
3203 },
3204 "IsoformSwitchAnalyzeR": {
3205 "name": "IsoformSwitchAnalyzeR",
3206 "version": "2.10.0",
3207 "sha256": "03xc279lhysn4lilmgi0fbx6a57xx0d31h0nyibw79qh3m14lisl",
3208 "depends": ["BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DBI", "DEXSeq", "GenomicRanges", "IRanges", "RColorBrewer", "RCurl", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VennDiagram", "XVector", "dplyr", "edgeR", "futile_logger", "ggplot2", "gridExtra", "limma", "magrittr", "pfamAnalyzeR", "plyr", "pwalign", "readr", "reshape2", "rtracklayer", "satuRn", "stringr", "sva", "tibble", "tidyr", "tximeta", "tximport"]
3209 },
3210 "KBoost": {
3211 "name": "KBoost",
3212 "version": "1.18.0",
3213 "sha256": "0wiz3s2zfypvgqxkg4qsyvcnh08cnkrsnmag97b932qx1fkxj0w7",
3214 "depends": []
3215 },
3216 "KCsmart": {
3217 "name": "KCsmart",
3218 "version": "2.68.0",
3219 "sha256": "1ki1khbs5gv2y4iysmf19dhxinlmrhi6xq0h1dj18avv1ng044xh",
3220 "depends": ["BiocGenerics", "KernSmooth", "multtest", "siggenes"]
3221 },
3222 "KEGGREST": {
3223 "name": "KEGGREST",
3224 "version": "1.50.0",
3225 "sha256": "09awamalar3w55yqcknkhvsj7zf3jwh8m5dbwc22pl5lij1w3mc5",
3226 "depends": ["Biostrings", "httr", "png"]
3227 },
3228 "KEGGgraph": {
3229 "name": "KEGGgraph",
3230 "version": "1.70.0",
3231 "sha256": "1d97w3q3rbnrcv0bqgns61sxxy2yynd6ibd14g4mjlfapyfa005z",
3232 "depends": ["RCurl", "Rgraphviz", "XML", "graph"]
3233 },
3234 "KEGGlincs": {
3235 "name": "KEGGlincs",
3236 "version": "1.36.0",
3237 "sha256": "01h49khx6fc654i55mjxpv3fy80rrqgmmczhvx18gjinrmckxzka",
3238 "depends": ["AnnotationDbi", "KEGGREST", "KEGGgraph", "KOdata", "RJSONIO", "XML", "gtools", "hgu133a_db", "httr", "igraph", "org_Hs_eg_db", "plyr"]
3239 },
3240 "KinSwingR": {
3241 "name": "KinSwingR",
3242 "version": "1.28.0",
3243 "sha256": "1v8ba5jbgc5q67xgj4ikkp8il0z444hywl47i3sshv7r6m86f9jv",
3244 "depends": ["BiocParallel", "data_table", "sqldf"]
3245 },
3246 "KnowSeq": {
3247 "name": "KnowSeq",
3248 "version": "1.24.0",
3249 "sha256": "1955z0dhb0dr4lpcyiwk4l6jg7l31bkh2ff0w1ypinrkkg7khrqd",
3250 "depends": ["Hmisc", "R_utils", "XML", "caret", "cqn", "e1071", "edgeR", "ggplot2", "gridExtra", "httr", "jsonlite", "kernlab", "limma", "praznik", "randomForest", "reshape2", "rlist", "rmarkdown", "stringr", "sva"]
3251 },
3252 "LACE": {
3253 "name": "LACE",
3254 "version": "2.14.0",
3255 "sha256": "09ibw1gj6hmswl5bs10h0r9n7pxqfffyfq2bcvvvn2jfsvdhhlzl",
3256 "depends": ["DT", "Matrix", "RColorBrewer", "Rfast", "SummarizedExperiment", "biomaRt", "bsplus", "callr", "configr", "curl", "data_table", "data_tree", "doParallel", "dplyr", "forcats", "foreach", "fs", "ggplot2", "htmltools", "htmlwidgets", "igraph", "jsonlite", "logr", "purrr", "readr", "shiny", "shinyBS", "shinyFiles", "shinydashboard", "shinyjs", "shinythemes", "shinyvalidate", "sortable", "stringi", "stringr", "svglite", "tidyr"]
3257 },
3258 "LBE": {
3259 "name": "LBE",
3260 "version": "1.78.0",
3261 "sha256": "0rbd4a3cpd19qb2f079rh28pjqanxgk8by4krdd22lj6gi97h1pg",
3262 "depends": []
3263 },
3264 "LEA": {
3265 "name": "LEA",
3266 "version": "3.22.0",
3267 "sha256": "14qpp18m3m9mwg2w4b7bm6218vs5ik2zk6m1wln4jd8rcn51dsxm",
3268 "depends": []
3269 },
3270 "LOBSTAHS": {
3271 "name": "LOBSTAHS",
3272 "version": "1.36.0",
3273 "sha256": "0bf2v7cckv34b3biqknwlpm8d9fkzbm5fkz1xvg528xwjk884m2f",
3274 "depends": ["CAMERA", "xcms"]
3275 },
3276 "LOLA": {
3277 "name": "LOLA",
3278 "version": "1.39.1",
3279 "sha256": "1r1c7am8qdwll7vl9lz15hx9c0srcq9y9dwl46r4wzdlfq9nwic0",
3280 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "data_table", "reshape2"]
3281 },
3282 "LPE": {
3283 "name": "LPE",
3284 "version": "1.84.0",
3285 "sha256": "000yaas7w28hzj61swwcy9ak6826syrhqriqqr0q0fdpgn881nhi",
3286 "depends": []
3287 },
3288 "LRBaseDbi": {
3289 "name": "LRBaseDbi",
3290 "version": "2.20.0",
3291 "sha256": "1j9q9h3x9chxjfbw12rf64b6m4fax1rzsx17rsxspxr59ka82q56",
3292 "depends": ["AnnotationDbi", "Biobase", "DBI", "RSQLite"]
3293 },
3294 "LRcell": {
3295 "name": "LRcell",
3296 "version": "1.18.0",
3297 "sha256": "0r5ck7clad67prlraj85nv90glmhwazvr8qr8qnl1nr3jby67613",
3298 "depends": ["AnnotationHub", "BiocParallel", "ExperimentHub", "dplyr", "ggplot2", "ggrepel", "magrittr"]
3299 },
3300 "LedPred": {
3301 "name": "LedPred",
3302 "version": "1.44.0",
3303 "sha256": "0mvac9bx7fqa7kwbm9w7snrnc19bvg01di6cx1r1hi3qg3gwybs4",
3304 "depends": ["RCurl", "ROCR", "akima", "e1071", "ggplot2", "irr", "jsonlite", "plot3D", "plyr", "testthat"]
3305 },
3306 "Lheuristic": {
3307 "name": "Lheuristic",
3308 "version": "1.2.0",
3309 "sha256": "16aq8vq6bpvbr1c8f11nky416ajk5rr31r316mncvpl45b0azq9m",
3310 "depends": ["Hmisc", "MultiAssayExperiment", "energy", "ggplot2", "ggpubr"]
3311 },
3312 "LimROTS": {
3313 "name": "LimROTS",
3314 "version": "1.2.0",
3315 "sha256": "1yb7mzz0kgpspmfkgj93aa341zd58rcvpd46iq4mrdy84g85ijym",
3316 "depends": ["BiocParallel", "S4Vectors", "SummarizedExperiment", "dplyr", "limma", "qvalue", "stringr"]
3317 },
3318 "LinkHD": {
3319 "name": "LinkHD",
3320 "version": "1.24.0",
3321 "sha256": "11v2sr9ascq2h1595r9qhal2p9frqin3a9frck90zch23hv59qlw",
3322 "depends": ["MultiAssayExperiment", "cluster", "data_table", "emmeans", "ggplot2", "ggpubr", "gridExtra", "reshape2", "rio", "scales", "vegan"]
3323 },
3324 "Linnorm": {
3325 "name": "Linnorm",
3326 "version": "2.34.0",
3327 "sha256": "0zh6pwfglgxhjp71ac0vqygazjsmg5pnwfh32i2nc6qrfp22f86d",
3328 "depends": ["MASS", "Rcpp", "RcppArmadillo", "Rtsne", "amap", "apcluster", "ellipse", "fastcluster", "fpc", "ggdendro", "ggplot2", "gmodels", "igraph", "limma", "mclust", "statmod", "vegan", "zoo"]
3329 },
3330 "LipidTrend": {
3331 "name": "LipidTrend",
3332 "version": "1.0.0",
3333 "sha256": "1d2kw6n0r8v2zhwnxvl14a4ri4z7418nqbbl5l2krfhd3p48v0bf",
3334 "depends": ["MKmisc", "SummarizedExperiment", "dplyr", "ggnewscale", "ggplot2", "magrittr", "matrixTests", "rlang"]
3335 },
3336 "LiquidAssociation": {
3337 "name": "LiquidAssociation",
3338 "version": "1.64.0",
3339 "sha256": "1wcdmhnphgb1yrvgahxk6bx9xigcrxjz2ivs1i4qfwxa8gwp9g84",
3340 "depends": ["Biobase", "geepack", "org_Sc_sgd_db", "yeastCC"]
3341 },
3342 "LoomExperiment": {
3343 "name": "LoomExperiment",
3344 "version": "1.28.0",
3345 "sha256": "0n0bkjl93l58glbk4llzy39b9s9yc5nq28fnr77dsl5piz4vvvqp",
3346 "depends": ["BiocIO", "DelayedArray", "GenomicRanges", "HDF5Array", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "rhdf5", "stringr"]
3347 },
3348 "LymphoSeq": {
3349 "name": "LymphoSeq",
3350 "version": "1.38.0",
3351 "sha256": "1n4dx54x5dgclc14vfcd91q3yy2dsz5jb5z4l5m2jy1csz4lr05d",
3352 "depends": ["Biostrings", "LymphoSeqDB", "RColorBrewer", "UpSetR", "VennDiagram", "circlize", "data_table", "dplyr", "ggplot2", "ggtree", "ineq", "msa", "phangorn", "plyr", "reshape", "stringdist"]
3353 },
3354 "M3C": {
3355 "name": "M3C",
3356 "version": "1.32.0",
3357 "sha256": "0g5lq89hh9q6lb09zpfh0z0zp5nq6h585mv1x68w8zd3y5ws5r5z",
3358 "depends": ["Matrix", "Rtsne", "cluster", "corpcor", "doParallel", "doSNOW", "foreach", "ggplot2", "matrixcalc", "umap"]
3359 },
3360 "M3Drop": {
3361 "name": "M3Drop",
3362 "version": "1.36.0",
3363 "sha256": "0w32rpc5v20iyix3xdcn9fvcwp1wk9p5wnilsxl0kwwi0n462vgb",
3364 "depends": ["Hmisc", "Matrix", "RColorBrewer", "bbmle", "gplots", "irlba", "matrixStats", "numDeriv", "reldist", "scater", "statmod"]
3365 },
3366 "MACSQuantifyR": {
3367 "name": "MACSQuantifyR",
3368 "version": "1.24.0",
3369 "sha256": "1jld2v0r3h7y6p1fx0wp84f34cv26cayhvhsq8any4wkglhp4ksa",
3370 "depends": ["ggplot2", "ggrepel", "gridExtra", "lattice", "latticeExtra", "png", "prettydoc", "readxl", "rmarkdown", "rvest", "xml2"]
3371 },
3372 "MACSr": {
3373 "name": "MACSr",
3374 "version": "1.18.0",
3375 "sha256": "1i64jxwqi3f4hkbhyzsybpxpiaz3lv936cxahms88i3mqq9yxrrm",
3376 "depends": ["AnnotationHub", "ExperimentHub", "S4Vectors", "basilisk", "reticulate"]
3377 },
3378 "MAGAR": {
3379 "name": "MAGAR",
3380 "version": "1.18.0",
3381 "sha256": "0xw3ikfv3zmzjw2agjajr715ala029lpb4g1y8qhq83l1ma06hxr",
3382 "depends": ["HDF5Array", "RnBeads", "RnBeads_hg19", "RnBeads_hg38", "UpSetR", "argparse", "bigstatsr", "crlmm", "data_table", "doParallel", "ff", "igraph", "impute", "jsonlite", "plyr", "reshape2", "rjson", "snpStats"]
3383 },
3384 "MAI": {
3385 "name": "MAI",
3386 "version": "1.16.0",
3387 "sha256": "14zk3x9kja7y5b8lljia2ndj4iin01j8vgq9fw3plrnh0jbrawsv",
3388 "depends": ["S4Vectors", "SummarizedExperiment", "caret", "doParallel", "e1071", "foreach", "future", "future_apply", "missForest", "pcaMethods", "tidyverse"]
3389 },
3390 "MAIT": {
3391 "name": "MAIT",
3392 "version": "1.44.0",
3393 "sha256": "1x4fd01jbzb6h8gwx4himwizyflzwa43cn7w1aql70bl26184hda",
3394 "depends": ["CAMERA", "MASS", "Rcpp", "agricolae", "caret", "class", "e1071", "gplots", "pls", "plsgenomics", "xcms"]
3395 },
3396 "MANOR": {
3397 "name": "MANOR",
3398 "version": "1.82.0",
3399 "sha256": "0bgv10b2639mcsvayxg7fv7jijvaz8nd0s0gp7lx62ddq1npw367",
3400 "depends": ["GLAD"]
3401 },
3402 "MAPFX": {
3403 "name": "MAPFX",
3404 "version": "1.6.0",
3405 "sha256": "1fwdy5jv44bx0sbhqgi9mm1h144d7wak6j5q97np4pir2rg4b3qj",
3406 "depends": ["Biobase", "ComplexHeatmap", "RColorBrewer", "Rfast", "circlize", "cowplot", "e1071", "flowCore", "ggplot2", "glmnetUtils", "gtools", "iCellR", "igraph", "pbapply", "reshape2", "stringr", "uwot", "xgboost"]
3407 },
3408 "MAST": {
3409 "name": "MAST",
3410 "version": "1.36.0",
3411 "sha256": "1q0r9288k7jz3brsprmdc3a2h6x2nji4x7pdbd5vsrz32xrjcydw",
3412 "depends": ["Biobase", "BiocGenerics", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "abind", "data_table", "ggplot2", "plyr", "progress", "reshape2", "stringr"]
3413 },
3414 "MBASED": {
3415 "name": "MBASED",
3416 "version": "1.44.0",
3417 "sha256": "07kkwigxg2d0c3vz3zf4vqim4b2gsv5fsk7z8pbcjjpbbf5dr392",
3418 "depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "RUnit", "SummarizedExperiment"]
3419 },
3420 "MBAmethyl": {
3421 "name": "MBAmethyl",
3422 "version": "1.44.0",
3423 "sha256": "0fcdp6jbk6bjha9jm6lp6g99yyalsdhlzwdr5jalfhddbag5bsr9",
3424 "depends": []
3425 },
3426 "MBCB": {
3427 "name": "MBCB",
3428 "version": "1.64.0",
3429 "sha256": "1nkjkp5gmyjsa07av154hrwb6slykzl2ls9f9y6417qhni5xznhv",
3430 "depends": ["preprocessCore", "tcltk2"]
3431 },
3432 "MBECS": {
3433 "name": "MBECS",
3434 "version": "1.14.0",
3435 "sha256": "1l0qgsf2jw9mjrahw79axa7pmwdrhywfzmcjdli5533i5lg4df1v",
3436 "depends": ["Matrix", "cluster", "dplyr", "ggplot2", "gridExtra", "limma", "lme4", "lmerTest", "magrittr", "pheatmap", "phyloseq", "rmarkdown", "ruv", "sva", "tibble", "tidyr", "vegan"]
3437 },
3438 "MBQN": {
3439 "name": "MBQN",
3440 "version": "2.22.0",
3441 "sha256": "0i1qdssiicjwxll12avyshmd6sy3rjxilxgihx9xv70wpkl8x18i",
3442 "depends": ["BiocFileCache", "PairedData", "RCurl", "SummarizedExperiment", "ggplot2", "limma", "preprocessCore", "rappdirs", "rmarkdown", "xml2"]
3443 },
3444 "MBttest": {
3445 "name": "MBttest",
3446 "version": "1.38.0",
3447 "sha256": "0531zxc51fp1cc9jb5c8vlvki4f5vqlgqnjag9zx5n62c2ik37fq",
3448 "depends": ["gplots", "gtools"]
3449 },
3450 "MCbiclust": {
3451 "name": "MCbiclust",
3452 "version": "1.34.0",
3453 "sha256": "15sr0m29nw0ypiqj4hr1axxkghyn5iclr3p9s763ixkiiqakbppy",
3454 "depends": ["AnnotationDbi", "BiocParallel", "GGally", "GO_db", "WGCNA", "cluster", "ggplot2", "org_Hs_eg_db", "scales"]
3455 },
3456 "MDTS": {
3457 "name": "MDTS",
3458 "version": "1.30.0",
3459 "sha256": "1j2k9hvl9h16c4vc59q4v1n9xrqiilk0rkxvj5pgy5vihh90nlnj",
3460 "depends": ["Biostrings", "DNAcopy", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "stringr"]
3461 },
3462 "MEAL": {
3463 "name": "MEAL",
3464 "version": "1.40.0",
3465 "sha256": "0vc1zz5x4d004k0hdglzv0cjz1y8w6n8568ns801x5dyhj651ywf",
3466 "depends": ["Biobase", "BiocGenerics", "GenomicRanges", "Gviz", "IRanges", "MultiDataSet", "S4Vectors", "SmartSVA", "SummarizedExperiment", "ggplot2", "isva", "limma", "matrixStats", "minfi", "missMethyl", "permute", "vegan"]
3467 },
3468 "MEAT": {
3469 "name": "MEAT",
3470 "version": "1.22.0",
3471 "sha256": "1l8v3i99wkvan1fi9d2g62d1pq5j2kvk13bf9hp4wdqqfb3rg62n",
3472 "depends": ["RPMM", "SummarizedExperiment", "dplyr", "dynamicTreeCut", "glmnet", "impute", "minfi", "stringr", "tibble", "wateRmelon"]
3473 },
3474 "MEB": {
3475 "name": "MEB",
3476 "version": "1.24.0",
3477 "sha256": "049bbl5hpy3c49vp7dssfg75rvbhbpg6zccnjx4dsr68nxmqqxmp",
3478 "depends": ["SingleCellExperiment", "SummarizedExperiment", "e1071", "edgeR", "scater", "wrswoR"]
3479 },
3480 "MEDIPS": {
3481 "name": "MEDIPS",
3482 "version": "1.62.0",
3483 "sha256": "1cwisrklpzna284vgnllpm5f950w3kq45rngjqi4mdngpj5mq1lf",
3484 "depends": ["BSgenome", "Biostrings", "DNAcopy", "GenomicRanges", "IRanges", "Rsamtools", "biomaRt", "edgeR", "gtools", "preprocessCore", "rtracklayer"]
3485 },
3486 "MEDME": {
3487 "name": "MEDME",
3488 "version": "1.70.0",
3489 "sha256": "13lngv3q33kirygkw7spxyn6bff58fglxzkifficxz2z9d3n2q9y",
3490 "depends": ["Biostrings", "MASS", "drc"]
3491 },
3492 "MEIGOR": {
3493 "name": "MEIGOR",
3494 "version": "1.44.0",
3495 "sha256": "1ybv8q9q9k84vnhy57zxisy1r8ya0555c77mcjrziqlzvw6zf1fr",
3496 "depends": ["CNORode", "Rsolnp", "deSolve", "snowfall"]
3497 },
3498 "MGFM": {
3499 "name": "MGFM",
3500 "version": "1.44.0",
3501 "sha256": "0bjnjpdba75wlsw9n17vywa09g5d0n741wlxmn2f61hipn6ajzgr",
3502 "depends": ["AnnotationDbi", "annotate"]
3503 },
3504 "MGnifyR": {
3505 "name": "MGnifyR",
3506 "version": "1.6.0",
3507 "sha256": "0p60i8xlfpz742j3ypz9vbcmn7ndkxaqfixcfvxwkj3v32yfij91",
3508 "depends": ["BiocGenerics", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "dplyr", "httr", "mia", "plyr", "reshape2", "tidyjson", "urltools"]
3509 },
3510 "MICSQTL": {
3511 "name": "MICSQTL",
3512 "version": "1.8.0",
3513 "sha256": "1w8pffapjy26vmwvhh58890nj8pjb2105hdf4gmfvh4zn5rvr41c",
3514 "depends": ["BiocParallel", "S4Vectors", "SummarizedExperiment", "TCA", "TOAST", "dirmult", "ggplot2", "ggpubr", "ggridges", "glue", "magrittr", "nnls", "purrr"]
3515 },
3516 "MIRA": {
3517 "name": "MIRA",
3518 "version": "1.32.0",
3519 "sha256": "0984rwhhz19mc3q7y4cpcz0vzfaiw6n5i4x3qv0412bmivpjp2kh",
3520 "depends": ["Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "bsseq", "data_table", "ggplot2"]
3521 },
3522 "MIRit": {
3523 "name": "MIRit",
3524 "version": "1.6.0",
3525 "sha256": "0mk01yzi4aan6k1bxlpjaiyh3yx8h060pdhgif67hidk8yav9gzk",
3526 "depends": ["AnnotationDbi", "BiocFileCache", "BiocParallel", "DESeq2", "MultiAssayExperiment", "Rcpp", "Rgraphviz", "edgeR", "fgsea", "genekitr", "geneset", "ggplot2", "ggpubr", "graph", "graphite", "httr", "limma", "rlang"]
3527 },
3528 "MLInterfaces": {
3529 "name": "MLInterfaces",
3530 "version": "1.90.0",
3531 "sha256": "055ppz9d1f5l2ab11zqf1v47d1mvhb97j45wyrr89d822085nml1",
3532 "depends": ["Biobase", "BiocGenerics", "MASS", "RColorBrewer", "Rcpp", "SummarizedExperiment", "annotate", "cluster", "fpc", "gbm", "gdata", "genefilter", "ggvis", "hwriter", "magrittr", "mlbench", "pls", "rpart", "sfsmisc", "shiny", "threejs"]
3533 },
3534 "MLP": {
3535 "name": "MLP",
3536 "version": "1.58.0",
3537 "sha256": "0q24amdsz4zpwf3vs9xcjbba8a3q4p9g54zqacxmjpd989f1ikvd",
3538 "depends": ["AnnotationDbi", "gplots"]
3539 },
3540 "MLSeq": {
3541 "name": "MLSeq",
3542 "version": "2.28.0",
3543 "sha256": "0wmygr2ss4h8pjynqa32d53f46sdmglgjcmnr6vifp915f4aa3gj",
3544 "depends": ["Biobase", "DESeq2", "SummarizedExperiment", "VennDiagram", "caret", "edgeR", "foreach", "ggplot2", "limma", "pamr", "plyr", "sSeq", "testthat", "xtable"]
3545 },
3546 "MMDiff2": {
3547 "name": "MMDiff2",
3548 "version": "1.38.0",
3549 "sha256": "18kj3ddhqwg9x623gfp8zc4mhfhqpi95f571rrfm30hiw1p6s6vr",
3550 "depends": ["BSgenome", "Biobase", "Biostrings", "GenomicRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "ggplot2", "locfit", "shiny"]
3551 },
3552 "MODA": {
3553 "name": "MODA",
3554 "version": "1.36.0",
3555 "sha256": "19f3nwr7czq7qw6lbmvck312w5dvk8ycad0a4n623r79xccgjs5y",
3556 "depends": ["AMOUNTAIN", "RColorBrewer", "WGCNA", "cluster", "dynamicTreeCut", "igraph"]
3557 },
3558 "MOFA2": {
3559 "name": "MOFA2",
3560 "version": "1.20.0",
3561 "sha256": "10a13ay9sckaajfqkx79274npiibghk98v717n0xzqxzcx6j7f79",
3562 "depends": ["DelayedArray", "HDF5Array", "RColorBrewer", "Rtsne", "basilisk", "corrplot", "cowplot", "dplyr", "forcats", "ggplot2", "ggrepel", "magrittr", "pheatmap", "reshape2", "reticulate", "rhdf5", "stringi", "tidyr", "uwot"]
3563 },
3564 "MOGAMUN": {
3565 "name": "MOGAMUN",
3566 "version": "1.20.0",
3567 "sha256": "18qqxgs3qy6r3rksqinck68mkcj1kh2gxrxaqlxd8xbhd0ixri1r",
3568 "depends": ["BiocParallel", "RCy3", "RUnit", "igraph", "stringr"]
3569 },
3570 "MOMA": {
3571 "name": "MOMA",
3572 "version": "1.22.0",
3573 "sha256": "0306d52fvb98vwaalw786vh1cb0b0swd8pkvbc642cylbb0aq9l2",
3574 "depends": ["ComplexHeatmap", "MKmisc", "MultiAssayExperiment", "RColorBrewer", "circlize", "cluster", "dplyr", "ggplot2", "magrittr", "qvalue", "readr", "reshape2", "rlang", "stringr", "tibble", "tidyr"]
3575 },
3576 "MOSClip": {
3577 "name": "MOSClip",
3578 "version": "1.4.0",
3579 "sha256": "1a7lkc2v2w12mzfmsakj4398xv7f8bjijsvsvczjglm24dbiijs4",
3580 "depends": ["AnnotationDbi", "ComplexHeatmap", "FactoMineR", "Matrix", "MultiAssayExperiment", "NbClust", "RColorBrewer", "S4Vectors", "SuperExactTest", "checkmate", "circlize", "corpcor", "coxrobust", "elasticnet", "gRbase", "ggplot2", "ggplotify", "graph", "graphite", "gridExtra", "igraph", "org_Hs_eg_db", "pheatmap", "qpgraph", "reshape", "survival", "survminer"]
3581 },
3582 "MOSim": {
3583 "name": "MOSim",
3584 "version": "2.6.0",
3585 "sha256": "16mq70imxcp1xkvz2dyvzdcm3h1k6l2s1awmlw58ipk0ycsfsx49",
3586 "depends": ["HiddenMarkov", "IRanges", "Rcpp", "S4Vectors", "Seurat", "Signac", "cpp11", "dplyr", "edgeR", "ggplot2", "lazyeval", "matrixStats", "rlang", "scran", "stringi", "stringr", "zoo"]
3587 },
3588 "MPAC": {
3589 "name": "MPAC",
3590 "version": "1.4.0",
3591 "sha256": "0n7cq12q5p913bca7495lnbcksqiww1vdxg0ysfl0ii39q4189ff",
3592 "depends": ["BiocParallel", "BiocSingular", "ComplexHeatmap", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "bluster", "circlize", "data_table", "fgsea", "fitdistrplus", "ggplot2", "ggraph", "igraph", "scales", "scran", "stringr", "survival", "survminer", "viridis"]
3593 },
3594 "MPFE": {
3595 "name": "MPFE",
3596 "version": "1.46.0",
3597 "sha256": "01v6ick1i5ix7b71glx56fxbal5ndrv5b2yq2lwzxp26wfq28kas",
3598 "depends": []
3599 },
3600 "MPRAnalyze": {
3601 "name": "MPRAnalyze",
3602 "version": "1.28.0",
3603 "sha256": "08c6v1lngv3wypl552n95pkhvq6an22g6wpy4dvrmwxg1layjf93",
3604 "depends": ["BiocParallel", "SummarizedExperiment", "progress"]
3605 },
3606 "MSA2dist": {
3607 "name": "MSA2dist",
3608 "version": "1.14.0",
3609 "sha256": "1rdqnk8l2b2p69yyvfa9ybv0ghxz2qks5rnczg10brmksf50g749",
3610 "depends": ["Biostrings", "GenomicRanges", "IRanges", "Rcpp", "RcppThread", "ape", "doParallel", "dplyr", "foreach", "pwalign", "rlang", "seqinr", "stringi", "stringr", "tibble", "tidyr"]
3611 },
3612 "MSPrep": {
3613 "name": "MSPrep",
3614 "version": "1.19.0",
3615 "sha256": "14n0f8rcx8fdn0w07wvbkprk3z31dfac6z8q7c50j0rp2xax9b69",
3616 "depends": ["S4Vectors", "SummarizedExperiment", "VIM", "crmn", "dplyr", "magrittr", "missForest", "pcaMethods", "preprocessCore", "rlang", "stringr", "sva", "tibble", "tidyr"]
3617 },
3618 "MSnID": {
3619 "name": "MSnID",
3620 "version": "1.44.0",
3621 "sha256": "1spb72pc7idn597sb8qywynf6sg306p8vbdbd0gcib1q1vinzqy0",
3622 "depends": ["AnnotationDbi", "AnnotationHub", "Biobase", "BiocGenerics", "BiocStyle", "Biostrings", "MSnbase", "ProtGenerics", "RUnit", "R_cache", "Rcpp", "data_table", "doParallel", "dplyr", "foreach", "ggplot2", "iterators", "msmsTests", "mzID", "mzR", "purrr", "reshape2", "rlang", "stringr", "tibble", "xtable"]
3623 },
3624 "MSnbase": {
3625 "name": "MSnbase",
3626 "version": "2.36.0",
3627 "sha256": "0k7diyzr92pjgia639w1c58km78pr199ajk0i72y4x1zbhx82c8v",
3628 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "IRanges", "MALDIquant", "MASS", "MsCoreUtils", "PSMatch", "ProtGenerics", "Rcpp", "S4Vectors", "affy", "digest", "ggplot2", "impute", "lattice", "mzID", "mzR", "pcaMethods", "plyr", "scales", "vsn"]
3629 },
3630 "MSstats": {
3631 "name": "MSstats",
3632 "version": "4.18.0",
3633 "sha256": "084275gir4sndjwx40qn642k1jian24xkby30x1ld7b378nsnmmf",
3634 "depends": ["MASS", "MSstatsConvert", "Rcpp", "RcppArmadillo", "checkmate", "data_table", "ggplot2", "ggrepel", "gplots", "htmltools", "limma", "lme4", "marray", "plotly", "preprocessCore", "rlang", "statmod", "survival"]
3635 },
3636 "MSstatsBig": {
3637 "name": "MSstatsBig",
3638 "version": "1.8.0",
3639 "sha256": "12hd5a0s1yfyzxmnrhpa8xicy5232m947d6gmqy4s6pfgi0mjzbs",
3640 "depends": ["DBI", "MSstats", "MSstatsConvert", "arrow", "dplyr", "readr", "sparklyr"]
3641 },
3642 "MSstatsBioNet": {
3643 "name": "MSstatsBioNet",
3644 "version": "1.2.0",
3645 "sha256": "0vaxm03xhzsvirkmzblg6qw89rxgi6g7w60csh1yyp08zcqhpmli",
3646 "depends": ["MSstats", "RCy3", "httr", "jsonlite", "r2r", "tidyr"]
3647 },
3648 "MSstatsConvert": {
3649 "name": "MSstatsConvert",
3650 "version": "1.20.0",
3651 "sha256": "0f8rf7mniv3r30910ilhnrcaffmqddkp4n4syq9aqdn7fl630s0b",
3652 "depends": ["Rcpp", "checkmate", "data_table", "log4r", "stringi"]
3653 },
3654 "MSstatsLOBD": {
3655 "name": "MSstatsLOBD",
3656 "version": "1.18.0",
3657 "sha256": "00czbv3rsg3nnwhvjwl27vm9bcywmmg7y16qnwjpx7hzdsznpyik",
3658 "depends": ["Rcpp", "ggplot2", "minpack_lm"]
3659 },
3660 "MSstatsLiP": {
3661 "name": "MSstatsLiP",
3662 "version": "1.16.0",
3663 "sha256": "19441shsymqvxzgkj0n1ypyga43514q06cphfyrhy6zcja0zrlcs",
3664 "depends": ["Biostrings", "MSstats", "MSstatsConvert", "MSstatsPTM", "Rcpp", "checkmate", "data_table", "dplyr", "factoextra", "ggplot2", "ggpubr", "gridExtra", "htmltools", "plotly", "purrr", "scales", "stringr", "tibble", "tidyr", "tidyverse"]
3665 },
3666 "MSstatsPTM": {
3667 "name": "MSstatsPTM",
3668 "version": "2.12.0",
3669 "sha256": "063q6bj0caxihnx9s66s0rkw9fxfhra53hfg0bfwd1iydgf10294",
3670 "depends": ["Biostrings", "MSstats", "MSstatsConvert", "MSstatsTMT", "Rcpp", "checkmate", "data_table", "dplyr", "ggplot2", "ggrepel", "gridExtra", "htmltools", "plotly", "stringi", "stringr"]
3671 },
3672 "MSstatsQC": {
3673 "name": "MSstatsQC",
3674 "version": "2.28.0",
3675 "sha256": "1672v4xgb108idm82n125sm048knaahp41msmwhjrrl59v7w7nw7",
3676 "depends": ["MSnbase", "dplyr", "ggExtra", "ggplot2", "plotly", "qcmetrics"]
3677 },
3678 "MSstatsQCgui": {
3679 "name": "MSstatsQCgui",
3680 "version": "1.30.0",
3681 "sha256": "0n10hkb5yds7jbv2q0p59rkia210y38frc5s49bb3z0mm1mg4kbb",
3682 "depends": ["MSstatsQC", "dplyr", "ggExtra", "gridExtra", "plotly", "shiny"]
3683 },
3684 "MSstatsResponse": {
3685 "name": "MSstatsResponse",
3686 "version": "1.0.0",
3687 "sha256": "1cbgkszjy7ywrdl31swi31yd8ndbkdz9k5wnxylfq1yii15yal03",
3688 "depends": ["BiocParallel", "data_table", "dplyr", "ggplot2"]
3689 },
3690 "MSstatsShiny": {
3691 "name": "MSstatsShiny",
3692 "version": "1.12.0",
3693 "sha256": "0hrym0l2jwr0hvlnkmbxvpfyjn9jdxddyq2abvzq597liw8x5r26",
3694 "depends": ["DT", "Hmisc", "MSstats", "MSstatsBioNet", "MSstatsConvert", "MSstatsPTM", "MSstatsTMT", "arrow", "data_table", "dplyr", "ggplot2", "ggrepel", "gplots", "htmltools", "marray", "mockery", "plotly", "readxl", "shiny", "shinyBS", "shinybusy", "shinydashboard", "shinyjs", "tidyr", "uuid"]
3695 },
3696 "MSstatsTMT": {
3697 "name": "MSstatsTMT",
3698 "version": "2.18.0",
3699 "sha256": "020h4w7xph1b4fzmhpwg2dxz0lx87ml17h9wlbabgixys9jrs4hq",
3700 "depends": ["MSstats", "MSstatsConvert", "checkmate", "data_table", "ggplot2", "htmltools", "limma", "lme4", "lmerTest", "plotly"]
3701 },
3702 "MVCClass": {
3703 "name": "MVCClass",
3704 "version": "1.84.0",
3705 "sha256": "05piqhv4dfwal0kws0qvdn14r1w5i2sx6wlgqr08w1wzf1cf3wvq",
3706 "depends": []
3707 },
3708 "MWASTools": {
3709 "name": "MWASTools",
3710 "version": "1.34.0",
3711 "sha256": "16d1vkw3wl9mspbfgsyzwpz1pz1krlz8g9g3159qqfmh7fwlwqpm",
3712 "depends": ["ComplexHeatmap", "KEGGREST", "KEGGgraph", "RCurl", "SummarizedExperiment", "boot", "car", "ggplot2", "glm2", "gridExtra", "igraph", "ppcor", "qvalue"]
3713 },
3714 "MantelCorr": {
3715 "name": "MantelCorr",
3716 "version": "1.80.0",
3717 "sha256": "1da839dpy6v14fc7kgn54n107y957xw7vvv5zkw10pd1x9nmrkaz",
3718 "depends": []
3719 },
3720 "MassArray": {
3721 "name": "MassArray",
3722 "version": "1.62.0",
3723 "sha256": "1kzxrq4f7fi3q538zq0pbn7s28mdh0fp9l8ipgwfdyiwkhsmp4i2",
3724 "depends": []
3725 },
3726 "MassSpecWavelet": {
3727 "name": "MassSpecWavelet",
3728 "version": "1.76.0",
3729 "sha256": "08fv8mqhld2xpbyk4yzmb4w01jcg1fiwa14p703admwx0kfly9kv",
3730 "depends": []
3731 },
3732 "MatrixGenerics": {
3733 "name": "MatrixGenerics",
3734 "version": "1.22.0",
3735 "sha256": "0yjm21hnzvdffq6xg2viabh3jamb0cb0rycplbhfdqf7k8ycngdm",
3736 "depends": ["matrixStats"]
3737 },
3738 "MatrixQCvis": {
3739 "name": "MatrixQCvis",
3740 "version": "1.18.0",
3741 "sha256": "1v2vx6vlk6s7i1zb3h24wq3hnqffi9fwf93fibcwsfzl2kdwf9bi",
3742 "depends": ["ComplexHeatmap", "DT", "ExperimentHub", "Hmisc", "MASS", "Rtsne", "SummarizedExperiment", "UpSetR", "dplyr", "ggplot2", "htmlwidgets", "impute", "imputeLCMD", "limma", "pcaMethods", "plotly", "proDA", "rlang", "rmarkdown", "shiny", "shinydashboard", "shinyhelper", "shinyjs", "sva", "tibble", "tidyr", "umap", "vsn"]
3743 },
3744 "MatrixRider": {
3745 "name": "MatrixRider",
3746 "version": "1.42.0",
3747 "sha256": "11nqdvaxnf49i57lf3gd3xcni6ybhjxsxsm0m1w0xl1isgvc451m",
3748 "depends": ["Biostrings", "IRanges", "S4Vectors", "TFBSTools", "XVector"]
3749 },
3750 "MeSHDbi": {
3751 "name": "MeSHDbi",
3752 "version": "1.46.0",
3753 "sha256": "1cxigmicaxqjrg8n36v2db4a806j8qx3iank7r17hxgniq5q8zh4",
3754 "depends": ["AnnotationDbi", "Biobase", "RSQLite"]
3755 },
3756 "MeasurementError_cor": {
3757 "name": "MeasurementError.cor",
3758 "version": "1.82.0",
3759 "sha256": "1hkpa8wisx29cz8n5m1w0vb7nbz1vbxpca6m3zja245zi6ifqbz9",
3760 "depends": []
3761 },
3762 "Mergeomics": {
3763 "name": "Mergeomics",
3764 "version": "1.38.0",
3765 "sha256": "0gvcvxh7aycmq5svwmn9vxjibcgpksv28irgal2m101vsjngmzx8",
3766 "depends": []
3767 },
3768 "MesKit": {
3769 "name": "MesKit",
3770 "version": "1.20.0",
3771 "sha256": "1x1s2ylbjd6mbq6498sj992ik44ipyi4rpnwwd4nj3q212dcx9wf",
3772 "depends": ["AnnotationDbi", "Biostrings", "ComplexHeatmap", "IRanges", "RColorBrewer", "S4Vectors", "ape", "circlize", "cowplot", "data_table", "dplyr", "ggplot2", "ggrepel", "ggridges", "mclust", "phangorn", "pracma", "tidyr"]
3773 },
3774 "MetCirc": {
3775 "name": "MetCirc",
3776 "version": "1.40.0",
3777 "sha256": "15zwkgwqnpndlpw9pqd5mkfbmcdb1aa331fvkkhxzdgcd5zq7a49",
3778 "depends": ["MsCoreUtils", "S4Vectors", "Spectra", "amap", "circlize", "ggplot2", "scales", "shiny"]
3779 },
3780 "MetID": {
3781 "name": "MetID",
3782 "version": "1.28.0",
3783 "sha256": "1xh0y6k6ik9nzy1wrzfr8b255194b26jibflgdi4vzn3hbm2z30p",
3784 "depends": ["ChemmineR", "Matrix", "devtools", "igraph", "stringr"]
3785 },
3786 "MetNet": {
3787 "name": "MetNet",
3788 "version": "1.28.0",
3789 "sha256": "0wj31qhyg0yn1cviprn3y6411rgl5sj0ns4iin3qc53qf4ypjspc",
3790 "depends": ["BiocParallel", "GENIE3", "GeneNet", "S4Vectors", "SummarizedExperiment", "bnlearn", "corpcor", "dplyr", "ggplot2", "parmigene", "psych", "rlang", "stabs", "tibble", "tidyr"]
3791 },
3792 "MetaCyto": {
3793 "name": "MetaCyto",
3794 "version": "1.32.0",
3795 "sha256": "1km53r657jfjipiq88nir9s6qwdl4c1mw8mldhimdy8hm6kf7mqx",
3796 "depends": ["FlowSOM", "cluster", "fastcluster", "flowCore", "ggplot2", "metafor", "tidyr"]
3797 },
3798 "MetaDICT": {
3799 "name": "MetaDICT",
3800 "version": "1.0.0",
3801 "sha256": "00afs37df59wc0yjxd3diskcxfyc2zjcv5nycvr5sv8bizlh0cx5",
3802 "depends": ["RANN", "ape", "cluster", "ecodist", "edgeR", "ggplot2", "ggpubr", "igraph", "matrixStats", "vegan", "viridis"]
3803 },
3804 "MetaNeighbor": {
3805 "name": "MetaNeighbor",
3806 "version": "1.29.0",
3807 "sha256": "0fvsnwwpvwbdcq7lgbb2jq9n6scr33ip3s3z14v6nxm7zmf6i5bn",
3808 "depends": ["Matrix", "RColorBrewer", "SingleCellExperiment", "SummarizedExperiment", "beanplot", "dplyr", "ggplot2", "gplots", "igraph", "matrixStats", "tibble", "tidyr"]
3809 },
3810 "MetaPhOR": {
3811 "name": "MetaPhOR",
3812 "version": "1.12.0",
3813 "sha256": "1lwb3ksf0yrdwzv9b0azcnn2fng4vrkwls3ds8bqaq6bn2n3pkxk",
3814 "depends": ["RCy3", "RecordLinkage", "clusterProfiler", "ggplot2", "ggrepel", "pheatmap", "stringr"]
3815 },
3816 "MetaboAnnotation": {
3817 "name": "MetaboAnnotation",
3818 "version": "1.14.0",
3819 "sha256": "07b72g2l2j16a3q6cl3fnpjk2v0iw92c1jb21hyhrs9lxvalsvqz",
3820 "depends": ["AnnotationHub", "BiocGenerics", "BiocParallel", "CompoundDb", "MetaboCoreUtils", "MsCoreUtils", "ProtGenerics", "QFeatures", "S4Vectors", "Spectra", "SummarizedExperiment"]
3821 },
3822 "MetaboCoreUtils": {
3823 "name": "MetaboCoreUtils",
3824 "version": "1.18.0",
3825 "sha256": "1ddcbr3lhi6pbb5mv2h41vgv26z9jncw1wbw5iq8dqhk09f9k1kn",
3826 "depends": ["BiocParallel", "MsCoreUtils"]
3827 },
3828 "MetaboDynamics": {
3829 "name": "MetaboDynamics",
3830 "version": "2.0.0",
3831 "sha256": "1xba89ira24vlidx9cf0rp6jjc3kfl4b324n8z1bpixzsnjqrw7h",
3832 "depends": ["BH", "KEGGREST", "Rcpp", "RcppEigen", "RcppParallel", "S4Vectors", "StanHeaders", "SummarizedExperiment", "ape", "dplyr", "dynamicTreeCut", "ggplot2", "ggtree", "patchwork", "rlang", "rstan", "rstantools", "stringr", "tidyr"]
3833 },
3834 "MetaboSignal": {
3835 "name": "MetaboSignal",
3836 "version": "1.40.0",
3837 "sha256": "07lxxxxn3h2ilrg436dgq0754s1xkkz9md91j89jwv0h4kpr22vj",
3838 "depends": ["AnnotationDbi", "EnsDb_Hsapiens_v75", "KEGGREST", "KEGGgraph", "MWASTools", "RCurl", "biomaRt", "hpar", "igraph", "mygene", "org_Hs_eg_db"]
3839 },
3840 "MethPed": {
3841 "name": "MethPed",
3842 "version": "1.38.0",
3843 "sha256": "18ld9iq0kxzc2igran2jr8w3jrj1k73p5i0lx8dgl58kdbg18ycj",
3844 "depends": ["Biobase", "randomForest"]
3845 },
3846 "MethReg": {
3847 "name": "MethReg",
3848 "version": "1.20.0",
3849 "sha256": "049cs12928mfmllqrrywmdk956ai7wsgxf4k093mh810g3qg1fwb",
3850 "depends": ["AnnotationHub", "DelayedArray", "ExperimentHub", "GenomicRanges", "IRanges", "JASPAR2024", "MASS", "Matrix", "RSQLite", "S4Vectors", "SummarizedExperiment", "TFBSTools", "dplyr", "ggplot2", "ggpubr", "openxlsx", "plyr", "progress", "pscl", "readr", "rlang", "sesame", "sesameData", "sfsmisc", "stringr", "tibble", "tidyr"]
3851 },
3852 "MethTargetedNGS": {
3853 "name": "MethTargetedNGS",
3854 "version": "1.42.0",
3855 "sha256": "0mjq3q8q43p5gni40z5xlkhgpdxnphwi8xjrqc9gjwwqbra5986l",
3856 "depends": ["Biostrings", "gplots", "pwalign", "seqinr", "stringr"]
3857 },
3858 "MethylAid": {
3859 "name": "MethylAid",
3860 "version": "1.44.0",
3861 "sha256": "1gg6wy7g583i348mvd9qww5pnjkn8g0ckkdkwf463kgs12483n2n",
3862 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "RColorBrewer", "SummarizedExperiment", "ggplot2", "gridBase", "hexbin", "matrixStats", "minfi", "shiny"]
3863 },
3864 "MethylMix": {
3865 "name": "MethylMix",
3866 "version": "2.40.0",
3867 "sha256": "1wdmq8jdnd37wrasdrfmy6xskpw2h6w2g3a514f0zn3m3fc7wpqv",
3868 "depends": ["RColorBrewer", "RCurl", "RPMM", "R_matlab", "data_table", "digest", "foreach", "ggplot2", "impute", "limma"]
3869 },
3870 "MethylSeekR": {
3871 "name": "MethylSeekR",
3872 "version": "1.50.0",
3873 "sha256": "00i0g5xxdd7xf268nqsl76im6d5za3h9apx2dsdyvjdrkn8shg98",
3874 "depends": ["BSgenome", "GenomeInfoDb", "GenomicRanges", "IRanges", "geneplotter", "mhsmm", "rtracklayer"]
3875 },
3876 "Mfuzz": {
3877 "name": "Mfuzz",
3878 "version": "2.70.0",
3879 "sha256": "0fjdfhj340fbv9m18a5hlsd8g7n9zdrn4h6h4fsa3pmzmj06x7l5",
3880 "depends": ["Biobase", "e1071", "tkWidgets"]
3881 },
3882 "MiChip": {
3883 "name": "MiChip",
3884 "version": "1.64.0",
3885 "sha256": "0bjvg2jyfif03vx53xznhdnmx2s4nfv05l6kbq907rv84ji692b8",
3886 "depends": ["Biobase"]
3887 },
3888 "MiPP": {
3889 "name": "MiPP",
3890 "version": "1.82.0",
3891 "sha256": "0y8dcf69c39capj45j276dhlcjxwvxny5bb5w4w9gp2l4gm3nraq",
3892 "depends": ["Biobase", "MASS", "e1071"]
3893 },
3894 "MiRaGE": {
3895 "name": "MiRaGE",
3896 "version": "1.52.0",
3897 "sha256": "0zl37d9adbra11ma4pra78w76vfdli1ljs8sv729dyn2h2vmjh1q",
3898 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocManager", "S4Vectors"]
3899 },
3900 "MicrobiomeProfiler": {
3901 "name": "MicrobiomeProfiler",
3902 "version": "1.16.0",
3903 "sha256": "0qqv2vkag5a3rp2wcf3kxk99dwymd0p828g12v301d65g5jzlp93",
3904 "depends": ["DT", "clusterProfiler", "config", "enrichplot", "ggplot2", "golem", "gson", "htmltools", "magrittr", "shiny", "shinyWidgets", "shinycustomloader", "yulab_utils"]
3905 },
3906 "MicrobiotaProcess": {
3907 "name": "MicrobiotaProcess",
3908 "version": "1.22.0",
3909 "sha256": "0lf3z2pcvvy905qanm2a7ryr2kb74rnghmn2ghq0669hqgdihh0x",
3910 "depends": ["Biostrings", "MASS", "SummarizedExperiment", "ape", "cli", "coin", "data_table", "dplyr", "dtplyr", "foreach", "ggfun", "ggplot2", "ggrepel", "ggsignif", "ggstar", "ggtree", "ggtreeExtra", "magrittr", "patchwork", "pillar", "plyr", "rlang", "tibble", "tidyr", "tidyselect", "tidytree", "treeio", "vegan", "zoo"]
3911 },
3912 "MineICA": {
3913 "name": "MineICA",
3914 "version": "1.49.0",
3915 "sha256": "0fnlyrx6a1m8l2zqphlkdsqdkcl4h5mv2fan0ig23k0qcv7cxyzs",
3916 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "GOstats", "Hmisc", "JADE", "RColorBrewer", "Rgraphviz", "annotate", "biomaRt", "cluster", "colorspace", "fastICA", "foreach", "fpc", "ggplot2", "graph", "gtools", "igraph", "lumi", "lumiHumanAll_db", "marray", "mclust", "plyr", "scales", "xtable"]
3917 },
3918 "MinimumDistance": {
3919 "name": "MinimumDistance",
3920 "version": "1.54.0",
3921 "sha256": "15s7a7w78p29a4a8p408r887pnl3l6wcsj1zjh0hjwvirn13v4hi",
3922 "depends": ["Biobase", "BiocGenerics", "DNAcopy", "GenomicRanges", "IRanges", "MatrixGenerics", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VanillaICE", "data_table", "ff", "foreach", "lattice", "matrixStats", "oligoClasses"]
3923 },
3924 "ModCon": {
3925 "name": "ModCon",
3926 "version": "1.18.0",
3927 "sha256": "0vg663nhmj1xmxh7bi5v9z0rcps3bl7qs6v6dd7wp6ybv8vkr5g1",
3928 "depends": ["data_table"]
3929 },
3930 "Modstrings": {
3931 "name": "Modstrings",
3932 "version": "1.26.0",
3933 "sha256": "1apgx7jf02y7v3rd36y3r3fsl41pg2ajxq9cmi4nrnpf0s1jq1f2",
3934 "depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "XVector", "crayon", "stringi", "stringr"]
3935 },
3936 "MoleculeExperiment": {
3937 "name": "MoleculeExperiment",
3938 "version": "1.10.0",
3939 "sha256": "0g30rqj98dagyxl7wl84imszrb7fh0c0cd2g41x1spviirwga1zm",
3940 "depends": ["BiocParallel", "EBImage", "Matrix", "S4Vectors", "SpatialExperiment", "cli", "data_table", "dplyr", "ggplot2", "magrittr", "purrr", "rhdf5", "rjson", "rlang", "terra"]
3941 },
3942 "Moonlight2R": {
3943 "name": "Moonlight2R",
3944 "version": "1.8.0",
3945 "sha256": "0x8w3qgm0k7pq2kyc7y6nqsbdfwqg68ki6bm1vvgx0wpgy9zza86",
3946 "depends": ["AnnotationHub", "Biobase", "BiocGenerics", "ComplexHeatmap", "DOSE", "EpiMix", "ExperimentHub", "GEOquery", "GenomicRanges", "HiveR", "RColorBrewer", "RISmed", "circlize", "clusterProfiler", "data_table", "doParallel", "dplyr", "easyPubMed", "foreach", "fuzzyjoin", "ggplot2", "gplots", "magrittr", "org_Hs_eg_db", "parmigene", "purrr", "qpdf", "randomForest", "readr", "rlang", "rtracklayer", "seqminer", "stringr", "tibble", "tidyHeatmap", "tidyr", "withr"]
3947 },
3948 "MoonlightR": {
3949 "name": "MoonlightR",
3950 "version": "1.36.0",
3951 "sha256": "1mlg7aczp8wafdmwjq9znra80w8h469dvsiqqpf5bhhbq8lax7qp",
3952 "depends": ["Biobase", "DOSE", "GEOquery", "HiveR", "RColorBrewer", "RISmed", "SummarizedExperiment", "TCGAbiolinks", "circlize", "clusterProfiler", "doParallel", "foreach", "gplots", "limma", "parmigene", "randomForest"]
3953 },
3954 "Motif2Site": {
3955 "name": "Motif2Site",
3956 "version": "1.14.0",
3957 "sha256": "1jgdh9gqlm0lydgk1l1946fhnb2ma8v63841bzaj3bw8j4876vjh",
3958 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "edgeR", "mixtools"]
3959 },
3960 "MotifDb": {
3961 "name": "MotifDb",
3962 "version": "1.52.0",
3963 "sha256": "01ps2pn7qv4v9f88z74mbj4293yamaa0mssaaai92knjvzc8fs2w",
3964 "depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "rtracklayer", "splitstackshape"]
3965 },
3966 "MotifPeeker": {
3967 "name": "MotifPeeker",
3968 "version": "1.2.0",
3969 "sha256": "0s16b0zpksm52w6kszhah6shrh69wxww847qq1fv9xrmrg8zryax",
3970 "depends": ["BSgenome", "BiocFileCache", "BiocParallel", "Biostrings", "DT", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "dplyr", "ggplot2", "heatmaply", "htmltools", "htmlwidgets", "memes", "plotly", "purrr", "rmarkdown", "rtracklayer", "tidyr", "universalmotif", "viridis"]
3971 },
3972 "MouseFM": {
3973 "name": "MouseFM",
3974 "version": "1.20.0",
3975 "sha256": "1kyagqg0rs5pzqqjn8fsdbmkaj9vzq6jqvrmyjswibxdasgy8vwm",
3976 "depends": ["GenomicRanges", "IRanges", "Seqinfo", "biomaRt", "curl", "data_table", "dplyr", "ggplot2", "gtools", "httr", "jsonlite", "reshape2", "rlist", "scales", "tidyr"]
3977 },
3978 "MsBackendMassbank": {
3979 "name": "MsBackendMassbank",
3980 "version": "1.18.0",
3981 "sha256": "06ac38fshnn1ra0k3dmmrlsc6036sx5kzb84h8j9k1j336ra3lm1",
3982 "depends": ["BiocParallel", "DBI", "IRanges", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra"]
3983 },
3984 "MsBackendMetaboLights": {
3985 "name": "MsBackendMetaboLights",
3986 "version": "1.4.0",
3987 "sha256": "1iniryzmqwbkwdxrax432hzndda81g5a7jylkm8579n872rl24cj",
3988 "depends": ["BiocFileCache", "ProtGenerics", "S4Vectors", "Spectra", "curl", "progress"]
3989 },
3990 "MsBackendMgf": {
3991 "name": "MsBackendMgf",
3992 "version": "1.18.0",
3993 "sha256": "0hycd0jj3bc5h3lcgxpm6ysy2mzk3jp0rxq1hrgyqpz1s9zigbsy",
3994 "depends": ["BiocParallel", "IRanges", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra"]
3995 },
3996 "MsBackendMsp": {
3997 "name": "MsBackendMsp",
3998 "version": "1.14.0",
3999 "sha256": "1mqrn6kq6hrnymv80ypls7mmpzjh0zy3b44d1ayikm5ilyg57dki",
4000 "depends": ["BiocParallel", "IRanges", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra"]
4001 },
4002 "MsBackendRawFileReader": {
4003 "name": "MsBackendRawFileReader",
4004 "version": "1.16.0",
4005 "sha256": "1169db99imv14brygihhfmb1qc3cmhmlwqi5snj5fc8vk46y59c1",
4006 "depends": ["BiocParallel", "IRanges", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra", "rawrr"]
4007 },
4008 "MsBackendSql": {
4009 "name": "MsBackendSql",
4010 "version": "1.10.0",
4011 "sha256": "1h0pbk4wkiri36qdmln7v0wglgpx5lhbnrv6q903j2x8nhjhgffx",
4012 "depends": ["BiocGenerics", "BiocParallel", "DBI", "IRanges", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra", "data_table", "fastmatch", "progress", "stringi"]
4013 },
4014 "MsCoreUtils": {
4015 "name": "MsCoreUtils",
4016 "version": "1.21.0",
4017 "sha256": "1lckbd96589vsmyy6prqijxafwiwx3mnm9c1jlw6dbxivfzmk3n7",
4018 "depends": ["MASS", "Rcpp", "S4Vectors", "clue"]
4019 },
4020 "MsDataHub": {
4021 "name": "MsDataHub",
4022 "version": "1.10.0",
4023 "sha256": "09rfj583b1vz3p328pnlrzj7mxg6804ia1q84p9y5pvzcb0z17fv",
4024 "depends": ["ExperimentHub"]
4025 },
4026 "MsExperiment": {
4027 "name": "MsExperiment",
4028 "version": "1.12.0",
4029 "sha256": "1braagzs450sxbh29rdh0dck7pwi49wd45rx3j36fw4720hgcilb",
4030 "depends": ["BiocGenerics", "DBI", "IRanges", "ProtGenerics", "QFeatures", "S4Vectors", "Spectra", "SummarizedExperiment"]
4031 },
4032 "MsFeatures": {
4033 "name": "MsFeatures",
4034 "version": "1.18.0",
4035 "sha256": "14cm8mmqgj1pf96fdkwasr8zfpyrpz9p8kfnq5n3srh9qnfsvyk7",
4036 "depends": ["MsCoreUtils", "ProtGenerics", "SummarizedExperiment"]
4037 },
4038 "MsQuality": {
4039 "name": "MsQuality",
4040 "version": "1.10.0",
4041 "sha256": "07cb36mrz11r6hpl5cwk3a5myagmslxik0jis8rxbsihkmilpb2r",
4042 "depends": ["BiocParallel", "MsExperiment", "ProtGenerics", "Spectra", "ggplot2", "htmlwidgets", "msdata", "plotly", "rlang", "rmzqc", "shiny", "shinydashboard", "stringr", "tibble", "tidyr"]
4043 },
4044 "MuData": {
4045 "name": "MuData",
4046 "version": "1.14.0",
4047 "sha256": "0b6289ladkm5c70i4rkw3hc7kxf038n3ryjs9fr44rb1q4mq940n",
4048 "depends": ["DelayedArray", "Matrix", "MultiAssayExperiment", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "rhdf5"]
4049 },
4050 "Mulcom": {
4051 "name": "Mulcom",
4052 "version": "1.60.0",
4053 "sha256": "1wy30yl3wl1a42mn447dsrlsswi55y00f3rrzpfyv85ap8sx2imw",
4054 "depends": ["Biobase", "fields"]
4055 },
4056 "MultiAssayExperiment": {
4057 "name": "MultiAssayExperiment",
4058 "version": "1.36.0",
4059 "sha256": "1idng7dc4fx0zn51r43vbxyyl2011y5bznzm4id8nv52zpknd753",
4060 "depends": ["Biobase", "BiocBaseUtils", "BiocGenerics", "DelayedArray", "GenomicRanges", "IRanges", "MatrixGenerics", "S4Vectors", "SummarizedExperiment", "tidyr"]
4061 },
4062 "MultiBaC": {
4063 "name": "MultiBaC",
4064 "version": "1.20.0",
4065 "sha256": "1cwf0aja5qydbhc7iws09hd9wc4jm98fj0snai59ymgb7vrs08zb",
4066 "depends": ["Matrix", "MultiAssayExperiment", "ggplot2", "pcaMethods", "plotrix", "ropls"]
4067 },
4068 "MultiDataSet": {
4069 "name": "MultiDataSet",
4070 "version": "1.38.0",
4071 "sha256": "06dgh6zvcz6d1yghys126mkjxmibdf4asn1n2ddmf8bxk500zl5i",
4072 "depends": ["Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "ggplot2", "ggrepel", "limma", "qqman"]
4073 },
4074 "MultiMed": {
4075 "name": "MultiMed",
4076 "version": "2.32.0",
4077 "sha256": "0pn5bavnq3gsyln89p6zrwn44147c9wjpkc04drk65hv9329yh3q",
4078 "depends": []
4079 },
4080 "MultiRNAflow": {
4081 "name": "MultiRNAflow",
4082 "version": "1.8.0",
4083 "sha256": "0h4jy154jq7g76a7bnirmpi7rjzzfdslw54sdzzrd7shr3amg4wd",
4084 "depends": ["Biobase", "ComplexHeatmap", "DESeq2", "FactoMineR", "Mfuzz", "S4Vectors", "SummarizedExperiment", "UpSetR", "factoextra", "ggalluvial", "ggplot2", "ggplotify", "ggrepel", "gprofiler2", "plot3D", "plot3Drgl", "reshape2", "rlang"]
4085 },
4086 "MultimodalExperiment": {
4087 "name": "MultimodalExperiment",
4088 "version": "1.10.0",
4089 "sha256": "1dv4bq17p1jwk4ympjd7902wmbqp641s87c8kdkr0c7qx5q7ibdj",
4090 "depends": ["BiocGenerics", "IRanges", "MultiAssayExperiment", "S4Vectors"]
4091 },
4092 "MungeSumstats": {
4093 "name": "MungeSumstats",
4094 "version": "1.18.0",
4095 "sha256": "0g2995z6gj0xrn45bvjpvnlp9cd9iwxq8hwvl4lfvaij1qqlv7i7",
4096 "depends": ["BSgenome", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "RCurl", "R_utils", "VariantAnnotation", "data_table", "dplyr", "ieugwasr", "rtracklayer", "stringr"]
4097 },
4098 "MutationalPatterns": {
4099 "name": "MutationalPatterns",
4100 "version": "3.19.1",
4101 "sha256": "1y7yxricvivg3ds3jacwf5qb366xvzw8sff9wddigz8p5kyzs7f6",
4102 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "NMF", "RColorBrewer", "S4Vectors", "Seqinfo", "VariantAnnotation", "cowplot", "dplyr", "ggalluvial", "ggdendro", "ggplot2", "magrittr", "pracma", "purrr", "stringr", "tibble", "tidyr"]
4103 },
4104 "NADfinder": {
4105 "name": "NADfinder",
4106 "version": "1.34.0",
4107 "sha256": "19gg4g815zgpphamvnyg6xk2jz47gwb49rr6inqz8l304a6ibsca",
4108 "depends": ["ATACseqQC", "BiocGenerics", "EmpiricalBrownsMethod", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "SummarizedExperiment", "baseline", "corrplot", "csaw", "limma", "metap", "rtracklayer", "signal", "trackViewer"]
4109 },
4110 "NBAMSeq": {
4111 "name": "NBAMSeq",
4112 "version": "1.26.0",
4113 "sha256": "0n19b7i3j0465gn41jyrdilgp6rwr3anzfa79l62z4l0ywkjld6r",
4114 "depends": ["BiocParallel", "DESeq2", "S4Vectors", "SummarizedExperiment", "genefilter", "mgcv"]
4115 },
4116 "NCIgraph": {
4117 "name": "NCIgraph",
4118 "version": "1.58.0",
4119 "sha256": "1vaf53lx2nrcnk45gbwr5whvy9a3ma2zdb8lqym1jp9hs1s1gn9q",
4120 "depends": ["KEGGgraph", "RBGL", "RCy3", "R_oo", "graph"]
4121 },
4122 "NOISeq": {
4123 "name": "NOISeq",
4124 "version": "2.54.0",
4125 "sha256": "05398q8cqywbvrqgzp9gjyjkv7dlq2v8f3w9rgz60jwma76vdxdw",
4126 "depends": ["Biobase", "Matrix"]
4127 },
4128 "NPARC": {
4129 "name": "NPARC",
4130 "version": "1.22.0",
4131 "sha256": "0iqmyf0bambl9dp1kypvcxfglvpryy61925zf9hhkapv7wj90v4j",
4132 "depends": ["BiocParallel", "MASS", "broom", "dplyr", "magrittr", "rlang", "tidyr"]
4133 },
4134 "NTW": {
4135 "name": "NTW",
4136 "version": "1.60.0",
4137 "sha256": "1rsg8294jr134gv01f7y2542ld595740agazr0661vsd18p0any5",
4138 "depends": ["mvtnorm"]
4139 },
4140 "NanoMethViz": {
4141 "name": "NanoMethViz",
4142 "version": "3.6.0",
4143 "sha256": "1rksk701jpck7ahphb11qrrz9a4hfc59sqlp8yprbjl9cz1pim69",
4144 "depends": ["AnnotationDbi", "BiocSingular", "Biostrings", "GenomicRanges", "IRanges", "R_utils", "Rcpp", "Rsamtools", "S4Vectors", "SummarizedExperiment", "assertthat", "bsseq", "cli", "cpp11", "dbscan", "dplyr", "e1071", "forcats", "fs", "ggplot2", "ggrastr", "glue", "limma", "patchwork", "purrr", "readr", "rlang", "scales", "stringr", "tibble", "tidyr", "withr"]
4145 },
4146 "NanoStringDiff": {
4147 "name": "NanoStringDiff",
4148 "version": "1.40.0",
4149 "sha256": "0mcnch09brr8c1kfmq6scv04gdxz02a0s8zi1v6xmqr151abkwng",
4150 "depends": ["Biobase", "Rcpp", "matrixStats"]
4151 },
4152 "NanoStringNCTools": {
4153 "name": "NanoStringNCTools",
4154 "version": "1.18.0",
4155 "sha256": "0l9rbm6b5k13jbf1jmwyiscg81rwkmxir4vidq1pdw53gmxf4mnx",
4156 "depends": ["Biobase", "BiocGenerics", "Biostrings", "IRanges", "RColorBrewer", "S4Vectors", "ggbeeswarm", "ggiraph", "ggplot2", "ggthemes", "pheatmap"]
4157 },
4158 "NanoTube": {
4159 "name": "NanoTube",
4160 "version": "1.16.0",
4161 "sha256": "0v4sxb205in1jrr79rvmcw8qp9pa0azb44crl1kmc9kvf9sh0p03",
4162 "depends": ["Biobase", "fgsea", "ggplot2", "limma", "reshape"]
4163 },
4164 "Nebulosa": {
4165 "name": "Nebulosa",
4166 "version": "1.20.0",
4167 "sha256": "0xb2xj3rj2hqaz1hhsijk83n3qvwp646gj3nx6y8s6k6kda3mwvr",
4168 "depends": ["Matrix", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "ggrastr", "ks", "patchwork"]
4169 },
4170 "NetActivity": {
4171 "name": "NetActivity",
4172 "version": "1.12.0",
4173 "sha256": "0ckjlx4ap2k8jk6ji3mg9dkkyqjyk5rw32p4qcpi0ysj0jvz020q",
4174 "depends": ["DESeq2", "DelayedArray", "DelayedMatrixStats", "NetActivityData", "SummarizedExperiment", "airway"]
4175 },
4176 "NetPathMiner": {
4177 "name": "NetPathMiner",
4178 "version": "1.46.0",
4179 "sha256": "18fvsd8nly7c35370id6ffx0skb82cp78si4qj889sdfgprh1haf",
4180 "depends": ["igraph"]
4181 },
4182 "NetSAM": {
4183 "name": "NetSAM",
4184 "version": "1.50.0",
4185 "sha256": "19jxwwd3ysd2b4h14rxybhf2m2bfs78szmjs36fqbwxb2ms8h0za",
4186 "depends": ["AnnotationDbi", "DBI", "GO_db", "R2HTML", "WGCNA", "biomaRt", "doParallel", "foreach", "igraph", "seriation", "survival"]
4187 },
4188 "NewWave": {
4189 "name": "NewWave",
4190 "version": "1.20.0",
4191 "sha256": "07yyj18891kkw5mim6gbc0vzadkafyqazhxrhbqmixr0pa29s7qr",
4192 "depends": ["BiocSingular", "DelayedArray", "Matrix", "SharedObject", "SingleCellExperiment", "SummarizedExperiment", "irlba"]
4193 },
4194 "NoRCE": {
4195 "name": "NoRCE",
4196 "version": "1.22.0",
4197 "sha256": "1sijrvp5l8bqn4ydklqknfgl1ikdj9lw9yzj3f3pdajgb644dmcc",
4198 "depends": ["AnnotationDbi", "DBI", "GO_db", "GenomicFeatures", "GenomicRanges", "IRanges", "KEGGREST", "RCurl", "RSQLite", "S4Vectors", "Seqinfo", "SummarizedExperiment", "biomaRt", "dbplyr", "dplyr", "ggplot2", "igraph", "png", "rWikiPathways", "reactome_db", "readr", "reshape2", "rtracklayer", "stringr", "tidyr"]
4199 },
4200 "NormalyzerDE": {
4201 "name": "NormalyzerDE",
4202 "version": "1.28.0",
4203 "sha256": "0xdgkvgh6m607m074kqqm2ajr7hagc0qdhsp2bwqkhr5kryhpdjb",
4204 "depends": ["MASS", "SummarizedExperiment", "ape", "car", "ggforce", "ggplot2", "limma", "matrixStats", "preprocessCore", "vsn"]
4205 },
4206 "NormqPCR": {
4207 "name": "NormqPCR",
4208 "version": "1.56.0",
4209 "sha256": "002jxkrqbm09xbaaacr3gd50c6pndsgqyfppg0kfyd4grhl3v0p5",
4210 "depends": ["Biobase", "RColorBrewer", "ReadqPCR", "qpcR"]
4211 },
4212 "NuPoP": {
4213 "name": "NuPoP",
4214 "version": "2.18.0",
4215 "sha256": "0v6fmvv35mhz4w3vdz6rlj13llrzrzgclc7aaa2pqh277cnpvsbv",
4216 "depends": []
4217 },
4218 "OCplus": {
4219 "name": "OCplus",
4220 "version": "1.84.0",
4221 "sha256": "1xqlb22qaiqmf73hqzwb8xqimc8nxsi6qr12bbdn8452izx32syv",
4222 "depends": ["interp", "multtest"]
4223 },
4224 "OGRE": {
4225 "name": "OGRE",
4226 "version": "1.14.0",
4227 "sha256": "1s32r0gjqpg7hkysz83m7i2xm3nxi9nl7pfpdqjlxxpcz0n67gnx",
4228 "depends": ["AnnotationHub", "DT", "GenomeInfoDb", "GenomicRanges", "Gviz", "IRanges", "S4Vectors", "Seqinfo", "assertthat", "data_table", "ggplot2", "rtracklayer", "shiny", "shinyBS", "shinyFiles", "shinydashboard", "tidyr"]
4229 },
4230 "OLIN": {
4231 "name": "OLIN",
4232 "version": "1.88.0",
4233 "sha256": "1vd4c6y7csfcmlsdgzq7jq1lnp7pffbbppkby0y137jh7lzr1sjf",
4234 "depends": ["limma", "locfit", "marray"]
4235 },
4236 "OLINgui": {
4237 "name": "OLINgui",
4238 "version": "1.84.0",
4239 "sha256": "1x2lmcgfccqxnf1zpyczkhh8vpw6p6zpp1rqp1048b7mqahpsddw",
4240 "depends": ["OLIN", "marray", "tkWidgets", "widgetTools"]
4241 },
4242 "OMICsPCA": {
4243 "name": "OMICsPCA",
4244 "version": "1.28.0",
4245 "sha256": "0qnk5ayhmxb99zbmpjp0pnmk6fbx5siqlafvqadinrjpm2nhihqr",
4246 "depends": ["FactoMineR", "HelloRanges", "IRanges", "MASS", "MultiAssayExperiment", "NbClust", "OMICsPCAdata", "PerformanceAnalytics", "Seqinfo", "clValid", "cluster", "corrplot", "cowplot", "data_table", "factoextra", "fpc", "ggplot2", "kableExtra", "magick", "pdftools", "reshape2", "rgl", "rmarkdown", "rtracklayer", "tidyr"]
4247 },
4248 "OPWeight": {
4249 "name": "OPWeight",
4250 "version": "1.32.0",
4251 "sha256": "14r3v31zddcaa8xbf09v4fs11iwsqjwjqb09hy9v46bgbmgy6bk3",
4252 "depends": ["MASS", "qvalue", "tibble"]
4253 },
4254 "ORFhunteR": {
4255 "name": "ORFhunteR",
4256 "version": "1.18.0",
4257 "sha256": "00qjdd3lxsjglq9lhaf15q64gprf9dlwdx4p2a5g5qdghb2fpscx",
4258 "depends": ["BSgenome_Hsapiens_UCSC_hg38", "Biostrings", "Peptides", "Rcpp", "data_table", "randomForest", "rtracklayer", "stringr", "xfun"]
4259 },
4260 "ORFik": {
4261 "name": "ORFik",
4262 "version": "1.30.0",
4263 "sha256": "122ssy6zdibc5zshrizg45l5943g54ahhr8m9x1niz2gfv1639vv",
4264 "depends": ["AnnotationDbi", "BSgenome", "BiocFileCache", "BiocGenerics", "BiocParallel", "Biostrings", "DESeq2", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "R_utils", "Rcpp", "Rsamtools", "S4Vectors", "SummarizedExperiment", "XML", "biomaRt", "biomartr", "cowplot", "data_table", "fst", "ggplot2", "gridExtra", "httr", "jsonlite", "qs", "rtracklayer", "txdbmaker", "withr", "xml2"]
4265 },
4266 "OSAT": {
4267 "name": "OSAT",
4268 "version": "1.58.0",
4269 "sha256": "0k92c8vyjl4cpdiizy5ffq05prwdp6nindxl3w26lnh3m65p59va",
4270 "depends": []
4271 },
4272 "OSTA_data": {
4273 "name": "OSTA.data",
4274 "version": "1.1.2",
4275 "sha256": "0bxhjk8vyz1ylni0wkm6pqhdc6g98ak1n1fvcrr5zrm30vf5vfyf",
4276 "depends": ["BiocFileCache", "osfr"]
4277 },
4278 "OTUbase": {
4279 "name": "OTUbase",
4280 "version": "1.60.0",
4281 "sha256": "1yqzkmfl71i4kk1xy5vgw8rnhjr2xh5zpdr99xirgkhz3xbay27h",
4282 "depends": ["Biobase", "Biostrings", "IRanges", "S4Vectors", "ShortRead", "vegan"]
4283 },
4284 "OUTRIDER": {
4285 "name": "OUTRIDER",
4286 "version": "1.28.0",
4287 "sha256": "0fgypmzap54d8bmln0y3fb9s2xyiz3v9zigfslwh7bbm8wnrqblx",
4288 "depends": ["BBmisc", "BiocGenerics", "BiocParallel", "DESeq2", "GenomicFeatures", "GenomicRanges", "IRanges", "PRROC", "RColorBrewer", "RMTstat", "Rcpp", "RcppArmadillo", "S4Vectors", "SummarizedExperiment", "data_table", "generics", "ggplot2", "ggrepel", "heatmaply", "matrixStats", "pcaMethods", "pheatmap", "plotly", "plyr", "pracma", "reshape2", "scales", "txdbmaker"]
4289 },
4290 "OVESEG": {
4291 "name": "OVESEG",
4292 "version": "1.26.0",
4293 "sha256": "0d9cmf9yzqyw6ksf54sv1iyzc6nzzahzr2dj9ghhc9s5hx0p2fhw",
4294 "depends": ["BiocParallel", "Rcpp", "SummarizedExperiment", "fdrtool", "limma"]
4295 },
4296 "OmaDB": {
4297 "name": "OmaDB",
4298 "version": "2.26.0",
4299 "sha256": "08b4w22inxykx3843a5yflq1iwr1w1ld3yd2bdnbmv23wf98khlm",
4300 "depends": ["Biostrings", "GenomicRanges", "IRanges", "ape", "httr", "jsonlite", "plyr", "topGO"]
4301 },
4302 "OmicCircos": {
4303 "name": "OmicCircos",
4304 "version": "1.48.0",
4305 "sha256": "0227a1zi1aqnaqz0wrvvya5py6wrcggmlj8px7bc17bimcaa95i4",
4306 "depends": ["GenomicRanges"]
4307 },
4308 "Omixer": {
4309 "name": "Omixer",
4310 "version": "1.20.0",
4311 "sha256": "1bxyvk26dlbdci5n0k4j3sm1gni4b9w5b5zrv47isd382j406pb2",
4312 "depends": ["dplyr", "forcats", "ggplot2", "gridExtra", "magrittr", "readr", "stringr", "tibble", "tidyselect"]
4313 },
4314 "OncoScore": {
4315 "name": "OncoScore",
4316 "version": "1.38.0",
4317 "sha256": "1ql4xlzj2cd4pr2j5zzb6xc1zhpp350ff79i9w74g8ir5c548m6a",
4318 "depends": ["biomaRt"]
4319 },
4320 "OncoSimulR": {
4321 "name": "OncoSimulR",
4322 "version": "4.12.0",
4323 "sha256": "18y9qdp3wzgc9chs89w9di4z34l2a3shzdwp8vga3mcw5h5issnr",
4324 "depends": ["RColorBrewer", "Rcpp", "Rgraphviz", "car", "data_table", "dplyr", "ggplot2", "ggrepel", "graph", "gtools", "igraph", "smatr", "stringr"]
4325 },
4326 "OpenStats": {
4327 "name": "OpenStats",
4328 "version": "1.22.0",
4329 "sha256": "0j9i3ija2x47gvg3r3nqshcjk1k43g032d851z6mqhg5aqv6kmbs",
4330 "depends": ["AICcmodavg", "Hmisc", "MASS", "car", "jsonlite", "knitr", "nlme", "rlist", "summarytools"]
4331 },
4332 "OrderedList": {
4333 "name": "OrderedList",
4334 "version": "1.82.0",
4335 "sha256": "10yb9yfpkynzhl9kw93sj3vs87ly3rjgjdzcgj4lyd2fz9n5h3xy",
4336 "depends": ["Biobase", "twilight"]
4337 },
4338 "Organism_dplyr": {
4339 "name": "Organism.dplyr",
4340 "version": "1.37.1",
4341 "sha256": "0n9qfwx54pniyb849cx5whnf9hbrsiqyd6xn4bqhq4sl29ly3npd",
4342 "depends": ["AnnotationDbi", "AnnotationFilter", "BiocFileCache", "DBI", "GenomicFeatures", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "Seqinfo", "dbplyr", "dplyr", "rlang", "tibble"]
4343 },
4344 "OrganismDbi": {
4345 "name": "OrganismDbi",
4346 "version": "1.52.0",
4347 "sha256": "180d26ri4r9fdzx1fvggif9yy6xgi1ys8zf11llhman65wwl1w6d",
4348 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocManager", "DBI", "GenomicFeatures", "GenomicRanges", "IRanges", "RBGL", "S4Vectors", "Seqinfo", "graph"]
4349 },
4350 "Oscope": {
4351 "name": "Oscope",
4352 "version": "1.40.0",
4353 "sha256": "1z1ghy7ix9gk613ilwqrmij91qych3slyrwp68vdhclkx5bs917b",
4354 "depends": ["BiocParallel", "EBSeq", "cluster", "testthat"]
4355 },
4356 "OutSplice": {
4357 "name": "OutSplice",
4358 "version": "1.10.0",
4359 "sha256": "13c7ssnjkyb5fhzr2d47x7c4pqbgacs6rj8965b61jq25g2yscvi",
4360 "depends": ["AnnotationDbi", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "org_Hs_eg_db"]
4361 },
4362 "PAA": {
4363 "name": "PAA",
4364 "version": "1.44.0",
4365 "sha256": "03rbqcly1gjcflbwxfn3lw1c6rdi96201lx15hq12b88hr6hzxk3",
4366 "depends": ["MASS", "ROCR", "Rcpp", "e1071", "gplots", "gtools", "limma", "mRMRe", "randomForest", "sva"]
4367 },
4368 "PADOG": {
4369 "name": "PADOG",
4370 "version": "1.52.0",
4371 "sha256": "1l33q9vnmq9dlxdvx0f25zb01ynxi6pw5gwbqcl8fdz6f4b4slan",
4372 "depends": ["AnnotationDbi", "Biobase", "GSA", "KEGGREST", "KEGGdzPathwaysGEO", "doRNG", "foreach", "hgu133a_db", "hgu133plus2_db", "limma", "nlme"]
4373 },
4374 "PAIRADISE": {
4375 "name": "PAIRADISE",
4376 "version": "1.26.0",
4377 "sha256": "1gmm2p4zgxqmgn90q4cr1qh2wrsazs5ls4jw9w5sps48i98laggd",
4378 "depends": ["BiocParallel", "S4Vectors", "SummarizedExperiment", "abind", "nloptr"]
4379 },
4380 "PANR": {
4381 "name": "PANR",
4382 "version": "1.56.0",
4383 "sha256": "0w4gxxhic91zdw0gh4hzy4sbpdfqvxy8m1riga2qy1sy2zh7wgkx",
4384 "depends": ["MASS", "RedeR", "igraph", "pvclust"]
4385 },
4386 "PAST": {
4387 "name": "PAST",
4388 "version": "1.26.0",
4389 "sha256": "0kyh078cphc27djbk76mdgd6mz0zwnbx0rmvsp0nrm0vj8y6zflq",
4390 "depends": ["GenomicRanges", "S4Vectors", "doParallel", "dplyr", "foreach", "ggplot2", "iterators", "qvalue", "rlang", "rtracklayer"]
4391 },
4392 "PCAN": {
4393 "name": "PCAN",
4394 "version": "1.38.0",
4395 "sha256": "15bcrr5mij4zvj2m195i4spvz8bp4rffd9154x4zf18k7m50vrrv",
4396 "depends": ["BiocParallel"]
4397 },
4398 "PDATK": {
4399 "name": "PDATK",
4400 "version": "1.18.0",
4401 "sha256": "0awhbxqp8kmjak7lffkwvhqdk4bgpgs15kc2icyfzbk7hm1l8lg7",
4402 "depends": ["BiocGenerics", "BiocParallel", "ConsensusClusterPlus", "CoreGx", "MatrixGenerics", "MultiAssayExperiment", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "caret", "clusterRepro", "data_table", "dplyr", "genefu", "ggplot2", "ggplotify", "igraph", "matrixStats", "pROC", "piano", "plyr", "reportROC", "rlang", "scales", "survcomp", "survival", "survminer", "switchBox", "verification"]
4403 },
4404 "PECA": {
4405 "name": "PECA",
4406 "version": "1.46.0",
4407 "sha256": "03bjxl5kx42090zsnbfanqjr09rj21h6m21alys7d1qr1h2mi7p0",
4408 "depends": ["ROTS", "affy", "aroma_affymetrix", "aroma_core", "genefilter", "limma", "preprocessCore"]
4409 },
4410 "PICB": {
4411 "name": "PICB",
4412 "version": "1.2.0",
4413 "sha256": "1wzf3d3x7c01cbqmy42m0nkhg93ff2k5dpj3air73dpdkif0wh1n",
4414 "depends": ["Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "data_table", "dplyr", "openxlsx", "seqinr"]
4415 },
4416 "PIPETS": {
4417 "name": "PIPETS",
4418 "version": "1.6.0",
4419 "sha256": "1nrfwhlzw4ygfgc6bv75xahj70q5cx314i78gapvmx6z3m63j9f1",
4420 "depends": ["BiocGenerics", "GenomicRanges", "dplyr"]
4421 },
4422 "PIUMA": {
4423 "name": "PIUMA",
4424 "version": "1.5.0",
4425 "sha256": "1k2gv9m1wcsc3awcbhmcmw0n8jh2grpzkagdj3gvqmvxli7ds2zi",
4426 "depends": ["Hmisc", "SummarizedExperiment", "cluster", "dbscan", "ggplot2", "igraph", "kernlab", "patchwork", "scales", "tsne", "umap", "vegan"]
4427 },
4428 "PLPE": {
4429 "name": "PLPE",
4430 "version": "1.70.0",
4431 "sha256": "0kyh0vpg1gmj0yriasp8algnmg0yn0ar7aqcssri3752bcv9g6fx",
4432 "depends": ["Biobase", "LPE", "MASS"]
4433 },
4434 "PLSDAbatch": {
4435 "name": "PLSDAbatch",
4436 "version": "1.6.0",
4437 "sha256": "0fvmpdmldd9f5kza9x5lnkrx9r445sndpdrh4xj49lflbzxlzn5s",
4438 "depends": ["Biobase", "BiocStyle", "Rdpack", "TreeSummarizedExperiment", "ggplot2", "ggpubr", "gridExtra", "lmerTest", "mixOmics", "performance", "pheatmap", "scales", "vegan"]
4439 },
4440 "PMScanR": {
4441 "name": "PMScanR",
4442 "version": "1.0.0",
4443 "sha256": "15qmll6nirl8whq4r1g13h7xycm5lmzq4rlqh291kw13fyy80acm",
4444 "depends": ["BiocFileCache", "bslib", "dplyr", "ggplot2", "ggseqlogo", "magrittr", "plotly", "reshape2", "rlang", "rtracklayer", "seqinr", "shiny", "shinyFiles", "stringr"]
4445 },
4446 "POMA": {
4447 "name": "POMA",
4448 "version": "1.20.0",
4449 "sha256": "11z36bzsch3j2b1pnifkjpyb0m1a5aq2l7k69icwj4ihbj8hv6ba",
4450 "depends": ["ComplexHeatmap", "DESeq2", "FSA", "MASS", "RankProd", "SummarizedExperiment", "broom", "caret", "dbscan", "dplyr", "fgsea", "ggcorrplot", "ggplot2", "ggrepel", "glmnet", "impute", "janitor", "limma", "lme4", "magrittr", "mixOmics", "msigdbr", "multcomp", "purrr", "randomForest", "rlang", "sva", "tibble", "tidyr", "uwot", "vegan"]
4451 },
4452 "POWSC": {
4453 "name": "POWSC",
4454 "version": "1.18.0",
4455 "sha256": "1sk5sk51k7cyq2yh5x4fygsgibdm2vqv8nnwfp96328x1nlf1kak",
4456 "depends": ["Biobase", "MAST", "RColorBrewer", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "limma", "pheatmap"]
4457 },
4458 "PPInfer": {
4459 "name": "PPInfer",
4460 "version": "1.36.0",
4461 "sha256": "02hwar7xg1l2qd035pvdzmy6hlsdqxllrps8xd7dd9bcyc3nnq4g",
4462 "depends": ["STRINGdb", "biomaRt", "fgsea", "ggplot2", "httr", "igraph", "kernlab", "yeastExpData"]
4463 },
4464 "PREDA": {
4465 "name": "PREDA",
4466 "version": "1.56.0",
4467 "sha256": "1yi4hs4hwp1pwf8rivjqkfcrgzixfmiqdl8raf38la683andq2m1",
4468 "depends": ["Biobase", "annotate", "lokern", "multtest"]
4469 },
4470 "PROMISE": {
4471 "name": "PROMISE",
4472 "version": "1.62.0",
4473 "sha256": "1daz6g1awdsb2yxfb390341yx8zl4xrilgdai6h2ci0qd4wffrz2",
4474 "depends": ["Biobase", "GSEABase"]
4475 },
4476 "PRONE": {
4477 "name": "PRONE",
4478 "version": "1.4.0",
4479 "sha256": "18l7f0mbs3gr1kasx81b6yayiqh06w7n1wcb4s68yw8q0cj4giv3",
4480 "depends": ["Biobase", "ComplexHeatmap", "ComplexUpset", "DEqMS", "MASS", "MSnbase", "NormalyzerDE", "POMA", "RColorBrewer", "ROTS", "S4Vectors", "SummarizedExperiment", "UpSetR", "circlize", "data_table", "dendsort", "dplyr", "edgeR", "ggplot2", "ggtext", "gprofiler2", "gtools", "limma", "magrittr", "matrixStats", "plotROC", "preprocessCore", "purrr", "reshape2", "scales", "stringr", "tibble", "tidyr", "vegan", "vsn"]
4481 },
4482 "PROPER": {
4483 "name": "PROPER",
4484 "version": "1.42.0",
4485 "sha256": "1a93nn3p9s09ncaddif07nwq9xwmfx85c11chap1yb398f19czj5",
4486 "depends": ["edgeR"]
4487 },
4488 "PROPS": {
4489 "name": "PROPS",
4490 "version": "1.32.0",
4491 "sha256": "0wlsavvln63sljmyf220xvs7rndqqylmnlrpwqpzffb3jw7djqjs",
4492 "depends": ["Biobase", "bnlearn", "reshape2", "sva"]
4493 },
4494 "PROcess": {
4495 "name": "PROcess",
4496 "version": "1.86.0",
4497 "sha256": "0hjcpmx0kx64fy1hlji0dbqr4d8r65v17z8a1lwh83ggn83mwz6a",
4498 "depends": ["Icens"]
4499 },
4500 "PSMatch": {
4501 "name": "PSMatch",
4502 "version": "1.14.0",
4503 "sha256": "021axxxc4590m350mcs14glyygzsy4m7x6zg3isfxn1rhsva351r",
4504 "depends": ["BiocGenerics", "BiocParallel", "IRanges", "Matrix", "MsCoreUtils", "ProtGenerics", "QFeatures", "S4Vectors", "Spectra", "igraph"]
4505 },
4506 "PWMEnrich": {
4507 "name": "PWMEnrich",
4508 "version": "4.46.0",
4509 "sha256": "07kcd91ziq0bf76q3437vr4rpvllx5f8bm6mbqndgbxffz4ar9q5",
4510 "depends": ["BiocGenerics", "Biostrings", "S4Vectors", "evd", "gdata", "seqLogo"]
4511 },
4512 "PanomiR": {
4513 "name": "PanomiR",
4514 "version": "1.14.0",
4515 "sha256": "0w9jm6xfrp42rwblq9b1xc17bqybv8m9b4sc44bbir5jb3x3cffi",
4516 "depends": ["GSEABase", "RColorBrewer", "clusterProfiler", "dplyr", "forcats", "igraph", "limma", "metap", "org_Hs_eg_db", "preprocessCore", "rlang", "tibble", "withr"]
4517 },
4518 "Path2PPI": {
4519 "name": "Path2PPI",
4520 "version": "1.40.0",
4521 "sha256": "10ziydlb83piccczmygq2s8vlrnbi7kksz8f5zc46myg8cz0lpdc",
4522 "depends": ["igraph"]
4523 },
4524 "PathNet": {
4525 "name": "PathNet",
4526 "version": "1.50.0",
4527 "sha256": "0jbvw17acxmv3hcfjzkhgfdc24qvfm5w8a5pda8gqyahjm2vnhvq",
4528 "depends": []
4529 },
4530 "PathoStat": {
4531 "name": "PathoStat",
4532 "version": "1.36.0",
4533 "sha256": "12l79rj60iibn9vgvsjwnsnsprba6i507q3852gdagamvfziar57",
4534 "depends": ["BiocStyle", "ComplexHeatmap", "DESeq2", "DT", "RColorBrewer", "ROCR", "XML", "ape", "corpcor", "devtools", "dplyr", "edgeR", "ggplot2", "glmnet", "gmodels", "knitr", "limma", "matrixStats", "phyloseq", "plotly", "plyr", "rentrez", "reshape2", "scales", "shiny", "shinyjs", "tidyr", "vegan", "webshot"]
4535 },
4536 "PeacoQC": {
4537 "name": "PeacoQC",
4538 "version": "1.20.0",
4539 "sha256": "05pv91clpdb6mq1ki8zp67rd7l414g7nacxcgqpxvdxwf35byibg",
4540 "depends": ["ComplexHeatmap", "circlize", "flowCore", "flowWorkspace", "ggplot2", "gridExtra", "plyr"]
4541 },
4542 "Pedixplorer": {
4543 "name": "Pedixplorer",
4544 "version": "1.6.0",
4545 "sha256": "0yih17g5950ykrflyhlgwdhjlb23wcm5xsf3901za5dm1nxak0ag",
4546 "depends": ["DT", "Matrix", "S4Vectors", "colourpicker", "dplyr", "ggplot2", "htmlwidgets", "igraph", "plotly", "plyr", "quadprog", "readxl", "shiny", "shinyWidgets", "shinycssloaders", "shinyhelper", "shinyjqui", "shinyjs", "shinytoastr", "stringr", "tidyr"]
4547 },
4548 "PepSetTest": {
4549 "name": "PepSetTest",
4550 "version": "1.4.0",
4551 "sha256": "0f60csg07bbsf5jjpzrxr8sdrr35q889990iaxbp7l9g0im0aygg",
4552 "depends": ["MASS", "SummarizedExperiment", "dplyr", "limma", "lme4", "matrixStats", "reshape2", "tibble"]
4553 },
4554 "PepsNMR": {
4555 "name": "PepsNMR",
4556 "version": "1.28.0",
4557 "sha256": "16fmlwhwgyw703n6m7f5r3y2kh3ix7qzblzcw1ckaxc0sak3p8fg",
4558 "depends": ["Matrix", "ggplot2", "gridExtra", "matrixStats", "ptw", "reshape2"]
4559 },
4560 "PhIPData": {
4561 "name": "PhIPData",
4562 "version": "1.18.0",
4563 "sha256": "0lj06ym0414hqxi1i6k7xbjrh7clhmw30gam39f34kf28iw8cc52",
4564 "depends": ["BiocFileCache", "BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "cli", "edgeR"]
4565 },
4566 "PharmacoGx": {
4567 "name": "PharmacoGx",
4568 "version": "3.14.0",
4569 "sha256": "1hz9cqhxsi13icw6my1yamx97nqcj684jgjxpfrh88qlq0diq04h",
4570 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "CoreGx", "MultiAssayExperiment", "RColorBrewer", "Rcpp", "S4Vectors", "SummarizedExperiment", "boot", "caTools", "checkmate", "coop", "data_table", "downloader", "ggplot2", "jsonlite", "magicaxis", "reshape2"]
4571 },
4572 "PhenoGeneRanker": {
4573 "name": "PhenoGeneRanker",
4574 "version": "1.18.0",
4575 "sha256": "1c9bjzn6f3j3bl1z4wfcyx21pwh2hrqpj3ack4b4h5hbmr0r8ilr",
4576 "depends": ["Matrix", "doParallel", "dplyr", "foreach", "igraph"]
4577 },
4578 "PhosR": {
4579 "name": "PhosR",
4580 "version": "1.20.0",
4581 "sha256": "0m7nxwnsanwwxd6yhc07hw96qm8p7bkyafn41p66g5zkaq2xrfwz",
4582 "depends": ["BiocGenerics", "GGally", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "circlize", "dendextend", "dplyr", "e1071", "ggdendro", "ggplot2", "ggpubr", "ggtext", "igraph", "limma", "network", "pcaMethods", "pheatmap", "preprocessCore", "reshape2", "rlang", "ruv", "stringi", "tidyr"]
4583 },
4584 "PhyloProfile": {
4585 "name": "PhyloProfile",
4586 "version": "2.2.0",
4587 "sha256": "1rmq0x7gc0l6h585qywlf6gsk3l72p7qqzlg0dmwwv7v9h5mdmv8",
4588 "depends": ["BiocStyle", "Biostrings", "DT", "RColorBrewer", "RCurl", "Rfast", "ape", "bioDist", "bsplus", "colourpicker", "data_table", "dplyr", "energy", "fastcluster", "ggplot2", "gridExtra", "htmlwidgets", "pbapply", "plotly", "scattermore", "shiny", "shinyFiles", "shinycssloaders", "shinyjs", "stringr", "svglite", "tsne", "umap", "xml2", "yaml", "zoo"]
4589 },
4590 "PoDCall": {
4591 "name": "PoDCall",
4592 "version": "1.18.0",
4593 "sha256": "07aa8d1zxgm4nqs86maj6h2xmfyg6bicwyflab8fr2glq89ssjap",
4594 "depends": ["DT", "LaplacesDemon", "diptest", "ggplot2", "gridExtra", "mclust", "purrr", "readr", "rlist", "shiny", "shinyjs"]
4595 },
4596 "PolySTest": {
4597 "name": "PolySTest",
4598 "version": "1.4.0",
4599 "sha256": "00zq59qj0hv956sfh93vwbdqiv77909b7zl114kjm2gvgrcpwfqm",
4600 "depends": ["S4Vectors", "SummarizedExperiment", "UpSetR", "circlize", "fdrtool", "gplots", "heatmaply", "knitr", "limma", "matrixStats", "plotly", "qvalue", "shiny"]
4601 },
4602 "Polytect": {
4603 "name": "Polytect",
4604 "version": "1.2.0",
4605 "sha256": "0a3myqbiqqnd669azx3qk9szc37436kffkd7gvy4kr3q8qaz4v4n",
4606 "depends": ["BiocManager", "DiceKriging", "ParamHelpers", "cowplot", "dplyr", "flowPeaks", "ggplot2", "lhs", "mlrMBO", "mvtnorm", "rgenoud", "smoof", "sn", "tidyverse"]
4607 },
4608 "PrInCE": {
4609 "name": "PrInCE",
4610 "version": "1.26.0",
4611 "sha256": "0c0jvjjc8syf2g6rj58475nxfa3h1qrc45iv36qzs1mwpdx5j5rw",
4612 "depends": ["Biobase", "Hmisc", "LiblineaR", "MSnbase", "Rdpack", "dplyr", "forecast", "magrittr", "naivebayes", "progress", "purrr", "ranger", "robustbase", "speedglm", "tester", "tidyr"]
4613 },
4614 "Prostar": {
4615 "name": "Prostar",
4616 "version": "1.42.0",
4617 "sha256": "1dg838si4bcs5i29q7yhsj5g2cdvddnqc19zqmf5gxpvj84l7r9l",
4618 "depends": ["Biobase", "DAPAR", "DAPARdata", "DT", "RColorBrewer", "R_utils", "XML", "colourpicker", "data_table", "future", "ggplot2", "gplots", "gtools", "highcharter", "htmlwidgets", "later", "markdown", "promises", "rclipboard", "rhandsontable", "sass", "shiny", "shinyAce", "shinyBS", "shinyTree", "shinyWidgets", "shinycssloaders", "shinyjqui", "shinyjs", "shinythemes", "tibble", "vioplot", "webshot"]
4619 },
4620 "ProtGenerics": {
4621 "name": "ProtGenerics",
4622 "version": "1.42.0",
4623 "sha256": "0g9d54az95qvqqnsbqjr4001jzfpwzs4apfjywxaha4k8cavb69f",
4624 "depends": []
4625 },
4626 "ProteoDisco": {
4627 "name": "ProteoDisco",
4628 "version": "1.16.0",
4629 "sha256": "13d46s2vzpkxq423cwhd26zhgxib28jh7dcmkm2pz704qgd988s8",
4630 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "ParallelLogger", "S4Vectors", "Seqinfo", "VariantAnnotation", "XVector", "checkmate", "cleaver", "dplyr", "plyr", "rlang", "tibble", "tidyr"]
4631 },
4632 "ProteoMM": {
4633 "name": "ProteoMM",
4634 "version": "1.28.0",
4635 "sha256": "1swqzig7dlkqq4kr8pbhfh3q2lk4c5cbm3knx14y86xpx9xsgqik",
4636 "depends": ["biomaRt", "gdata", "ggplot2", "ggrepel", "gtools", "matrixStats"]
4637 },
4638 "PureCN": {
4639 "name": "PureCN",
4640 "version": "2.16.0",
4641 "sha256": "1kzp4avvnzih12m7c46n440msrrb97ibsjzwf6ay1l7n8qrjmqqi",
4642 "depends": ["Biobase", "BiocGenerics", "Biostrings", "DNAcopy", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VGAM", "VariantAnnotation", "data_table", "futile_logger", "ggplot2", "gridExtra", "mclust", "rhdf5", "rtracklayer"]
4643 },
4644 "Pviz": {
4645 "name": "Pviz",
4646 "version": "1.44.0",
4647 "sha256": "196x9n0rs1cs9c2j11fg8a2w09rpbmzgm6pwmamc8mqir91yajzk",
4648 "depends": ["Biostrings", "GenomicRanges", "Gviz", "IRanges", "biovizBase", "data_table"]
4649 },
4650 "QDNAseq": {
4651 "name": "QDNAseq",
4652 "version": "1.46.0",
4653 "sha256": "12bf7x4c2vhq28vbzj322yp2gyvwcakpw13x6bsi3r87vg8rfdlr",
4654 "depends": ["Biobase", "BiocGenerics", "CGHbase", "CGHcall", "DNAcopy", "GenomicRanges", "IRanges", "R_utils", "Rsamtools", "Seqinfo", "future_apply", "matrixStats"]
4655 },
4656 "QFeatures": {
4657 "name": "QFeatures",
4658 "version": "1.20.0",
4659 "sha256": "0q14b2ppvdd9gb89xp86gdn45krzv5sz1n3f6ip6qxi8nn293lzy",
4660 "depends": ["AnnotationFilter", "Biobase", "BiocGenerics", "IRanges", "MsCoreUtils", "MultiAssayExperiment", "ProtGenerics", "S4Vectors", "SummarizedExperiment", "igraph", "lazyeval", "plotly", "reshape2", "tidyr", "tidyselect"]
4661 },
4662 "QRscore": {
4663 "name": "QRscore",
4664 "version": "1.2.0",
4665 "sha256": "1wh503rrfghah7xk3dj7rxxajg8s0xfyj6xczz4a007bc93hv976",
4666 "depends": ["BiocParallel", "MASS", "arrangements", "assertthat", "dplyr", "hitandrun", "pscl"]
4667 },
4668 "QSutils": {
4669 "name": "QSutils",
4670 "version": "1.28.0",
4671 "sha256": "04f0jslf8cg93yz14nhf9rqpnaslbyg6vnlspjs2rf6lpdjqjx34",
4672 "depends": ["BiocGenerics", "Biostrings", "ape", "psych", "pwalign"]
4673 },
4674 "QTLExperiment": {
4675 "name": "QTLExperiment",
4676 "version": "2.2.0",
4677 "sha256": "1dx94w8kjdn2vs8kyvdwik7hjgi5rv2ixmgjjck9ri5lh7488nhi",
4678 "depends": ["BiocGenerics", "S4Vectors", "SummarizedExperiment", "ashr", "checkmate", "collapse", "dplyr", "rlang", "tibble", "tidyr", "vroom"]
4679 },
4680 "QUBIC": {
4681 "name": "QUBIC",
4682 "version": "1.38.0",
4683 "sha256": "1x3kps3n6qqkdm5q3c0mhy10d2f9a059afqc84n6vqcdvh9zbhsj",
4684 "depends": ["Matrix", "Rcpp", "RcppArmadillo", "biclust"]
4685 },
4686 "Qtlizer": {
4687 "name": "Qtlizer",
4688 "version": "1.24.0",
4689 "sha256": "1fj2lbzn7myxa287b014jyjjfh47qa9x22bqrxvipg1q36kg6xf2",
4690 "depends": ["GenomicRanges", "curl", "httr", "stringi"]
4691 },
4692 "QuasR": {
4693 "name": "QuasR",
4694 "version": "1.50.0",
4695 "sha256": "145wzdnhjhi0ys8nlsasjqw57f693yf2iichd9045s52x5zjny4h",
4696 "depends": ["AnnotationDbi", "BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicFeatures", "GenomicFiles", "GenomicRanges", "IRanges", "Rbowtie", "Rhtslib", "Rsamtools", "S4Vectors", "Seqinfo", "ShortRead", "rtracklayer", "txdbmaker"]
4697 },
4698 "QuaternaryProd": {
4699 "name": "QuaternaryProd",
4700 "version": "1.44.0",
4701 "sha256": "1qsjs49byidzd67izzcakf4dvxzgsw7i79ly237ppr8h75nbzc6w",
4702 "depends": ["Rcpp", "dplyr", "yaml"]
4703 },
4704 "R3CPET": {
4705 "name": "R3CPET",
4706 "version": "1.42.0",
4707 "sha256": "1lj391k0sx58n2rjniixr3l0hkdw2y1hsf492fhj7cnhzph6bdj9",
4708 "depends": ["BiocGenerics", "GenomeInfoDb", "GenomicRanges", "Hmisc", "IRanges", "RCurl", "Rcpp", "S4Vectors", "clValid", "data_table", "ggbio", "ggplot2", "igraph", "pheatmap", "reshape2"]
4709 },
4710 "R4RNA": {
4711 "name": "R4RNA",
4712 "version": "1.38.0",
4713 "sha256": "1hgyqqw7abkkx525j0i9qhrs0bir29xsxbzg0lg93swfsf4jwily",
4714 "depends": ["Biostrings"]
4715 },
4716 "RAIDS": {
4717 "name": "RAIDS",
4718 "version": "1.8.0",
4719 "sha256": "150fiaw8nl8b3687aay30n2d36z9310wjhfikglc0l90k4y1a0i8",
4720 "depends": ["AnnotationDbi", "AnnotationFilter", "BSgenome", "GENESIS", "GenomicRanges", "IRanges", "MatrixGenerics", "Rsamtools", "S4Vectors", "SNPRelate", "VariantAnnotation", "class", "dplyr", "ensembldb", "gdsfmt", "ggplot2", "pROC", "rlang", "stringr"]
4721 },
4722 "RAREsim": {
4723 "name": "RAREsim",
4724 "version": "1.14.0",
4725 "sha256": "0acrjn0zrvi1an8jpjhmlgg6ndnxyd427xvqynq5y4rrl49kh80f",
4726 "depends": ["nloptr"]
4727 },
4728 "RBGL": {
4729 "name": "RBGL",
4730 "version": "1.86.0",
4731 "sha256": "083gm7biwq5z0jibr3wbdkjs50kqphwjkh571awk8rhlniqwpi1f",
4732 "depends": ["BH", "graph"]
4733 },
4734 "RBM": {
4735 "name": "RBM",
4736 "version": "1.42.0",
4737 "sha256": "1yqq95503l1jhlppqgirgrrzskhw0h2zap5vrym7ba9x7f42pdcy",
4738 "depends": ["limma", "marray"]
4739 },
4740 "RBioFormats": {
4741 "name": "RBioFormats",
4742 "version": "1.10.0",
4743 "sha256": "0k1cmh3qdiw2kyidzgn2vbsmnp6ag1nw9v9cr58m5j4hlx5zj2n1",
4744 "depends": ["EBImage", "S4Vectors", "rJava"]
4745 },
4746 "RCAS": {
4747 "name": "RCAS",
4748 "version": "1.36.0",
4749 "sha256": "1jrwmggylbgq9k7y9b8l176pk5b2r2ggcs2psf2bl2p96wczj4jb",
4750 "depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BiocGenerics", "Biostrings", "DT", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "cowplot", "data_table", "genomation", "ggplot2", "gprofiler2", "knitr", "pbapply", "pheatmap", "plotly", "plotrix", "proxy", "ranger", "rmarkdown", "rtracklayer", "seqLogo", "txdbmaker"]
4751 },
4752 "RCASPAR": {
4753 "name": "RCASPAR",
4754 "version": "1.56.0",
4755 "sha256": "0076zajkxmmqgwpkw0spfyqx5r5y0nqpqr6jh2yma24wxprhx228",
4756 "depends": []
4757 },
4758 "RCM": {
4759 "name": "RCM",
4760 "version": "1.26.0",
4761 "sha256": "1r26gqkzqxv6a8q3a7rdisggznx51v1hn6wq35300wxixzh6nz36",
4762 "depends": ["MASS", "RColorBrewer", "VGAM", "alabama", "edgeR", "ggplot2", "nleqslv", "phyloseq", "reshape2", "tensor", "tseries"]
4763 },
4764 "RCSL": {
4765 "name": "RCSL",
4766 "version": "1.18.0",
4767 "sha256": "1cq8xzn109knhgzvzvdq8pz677jq5k7zmzn009h1nm9g8vn9fsq6",
4768 "depends": ["MatrixGenerics", "NbClust", "Rcpp", "RcppAnnoy", "Rtsne", "SingleCellExperiment", "ggplot2", "igraph", "pracma", "umap"]
4769 },
4770 "RCX": {
4771 "name": "RCX",
4772 "version": "1.14.0",
4773 "sha256": "0h7blsgi60na56xgy2m47irqd9ql6dfmifrk1kcgnydcz5wjzr3g",
4774 "depends": ["igraph", "jsonlite", "plyr"]
4775 },
4776 "RCy3": {
4777 "name": "RCy3",
4778 "version": "2.30.0",
4779 "sha256": "1xc19lvdz6yyg2844j83idv64adfrw1bkpiazd4w39xa46l46lck",
4780 "depends": ["BiocGenerics", "IRdisplay", "IRkernel", "RColorBrewer", "RCurl", "RJSONIO", "XML", "base64enc", "base64url", "fs", "glue", "gplots", "graph", "httr", "stringi", "uuid"]
4781 },
4782 "RCyjs": {
4783 "name": "RCyjs",
4784 "version": "2.32.0",
4785 "sha256": "0xdflz3m2nrw6w05mmsqpdk5jhzikkfn9wq5fwclhgmr8jr687fm",
4786 "depends": ["BiocGenerics", "BrowserViz", "base64enc", "graph", "httpuv"]
4787 },
4788 "RDRToolbox": {
4789 "name": "RDRToolbox",
4790 "version": "1.60.0",
4791 "sha256": "1vwbwli7ypchkjr6m5siv9zvy18689fvsnh99w6h9rlisbrhlw7c",
4792 "depends": ["MASS", "rgl"]
4793 },
4794 "REBET": {
4795 "name": "REBET",
4796 "version": "1.28.0",
4797 "sha256": "17s6rhqvvngx5k39kjw5p1j9wzv8ycak0qlhgqqjchhx2sdk2xrz",
4798 "depends": ["ASSET"]
4799 },
4800 "REDseq": {
4801 "name": "REDseq",
4802 "version": "1.56.0",
4803 "sha256": "0p0gwhq95s32d7nps5sg7zx0xi7ndg26bzb6yaxx3ymc8qsnpwvv",
4804 "depends": ["AnnotationDbi", "BSgenome", "BSgenome_Celegans_UCSC_ce2", "BiocGenerics", "Biostrings", "ChIPpeakAnno", "IRanges", "multtest"]
4805 },
4806 "REMP": {
4807 "name": "REMP",
4808 "version": "1.34.0",
4809 "sha256": "1xvzxgcjy1va1spd0g0zfnaa7n2fk0ji3lxki8n7s2qs2r7qpjc5",
4810 "depends": ["AnnotationHub", "BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "SummarizedExperiment", "caret", "doParallel", "foreach", "impute", "iterators", "kernlab", "minfi", "org_Hs_eg_db", "ranger", "readr", "rtracklayer", "settings"]
4811 },
4812 "RESOLVE": {
4813 "name": "RESOLVE",
4814 "version": "1.12.0",
4815 "sha256": "1r34ahcnbnxaz54zzyl8v3mawl5pbzrn7r43qj9nma1vxklf1yxk",
4816 "depends": ["BSgenome", "BSgenome_Hsapiens_1000genomes_hs37d5", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "MutationalPatterns", "RhpcBLASctl", "S4Vectors", "cluster", "data_table", "ggplot2", "glmnet", "gridExtra", "lsa", "nnls", "reshape2", "survival"]
4817 },
4818 "RFLOMICS": {
4819 "name": "RFLOMICS",
4820 "version": "1.2.0",
4821 "sha256": "17vjzydinij9sqj2ng6s2hjhb2652rsnzppalfrydf61kdjrk99g",
4822 "depends": ["AnnotationDbi", "ComplexHeatmap", "DT", "FactoMineR", "MOFA2", "MultiAssayExperiment", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "UpSetR", "clusterProfiler", "coseq", "data_table", "dplyr", "edgeR", "enrichplot", "ggplot2", "ggpubr", "ggrepel", "htmltools", "httr", "knitr", "limma", "magrittr", "mixOmics", "org_At_tair_db", "plotly", "purrr", "reshape2", "reticulate", "rmarkdown", "shiny", "shinyBS", "shinyWidgets", "shinydashboard", "stringr", "tibble", "tidyr", "tidyselect", "vroom"]
4823 },
4824 "RGSEA": {
4825 "name": "RGSEA",
4826 "version": "1.44.0",
4827 "sha256": "1rlx525m2p82fsy4crwsiph6wds8aaqs1nmiyq8r47j0qzkxcblg",
4828 "depends": ["BiocGenerics"]
4829 },
4830 "RGraph2js": {
4831 "name": "RGraph2js",
4832 "version": "1.38.0",
4833 "sha256": "14j90xk3h20wsrpxq0wacrbnl8vwr6r80fdq415rpaahzg3simhy",
4834 "depends": ["digest", "graph", "rjson", "whisker"]
4835 },
4836 "RITAN": {
4837 "name": "RITAN",
4838 "version": "1.34.0",
4839 "sha256": "0mj8dvqwvjgyj8igwmyr70rs8244id81q7r7h75ncky8kq74q6kp",
4840 "depends": ["AnnotationFilter", "BgeeDB", "EnsDb_Hsapiens_v86", "GenomicFeatures", "MCL", "RColorBrewer", "RITANdata", "STRINGdb", "dynamicTreeCut", "ensembldb", "ggplot2", "gplots", "gridExtra", "gsubfn", "hash", "igraph", "knitr", "plotrix", "png", "reshape2", "sqldf"]
4841 },
4842 "RIVER": {
4843 "name": "RIVER",
4844 "version": "1.34.0",
4845 "sha256": "1nf56wlh5v678w6bjgyqkalk7vhimyl6830v64iwfm5mxqj18726",
4846 "depends": ["Biobase", "ggplot2", "glmnet", "pROC"]
4847 },
4848 "RImmPort": {
4849 "name": "RImmPort",
4850 "version": "1.38.0",
4851 "sha256": "0wljrymp15b7lav18cwfhzfx9m18sk80jaqb0ng53dajz5pvhpyj",
4852 "depends": ["DBI", "RSQLite", "data_table", "dplyr", "plyr", "reshape2", "sqldf"]
4853 },
4854 "RJMCMCNucleosomes": {
4855 "name": "RJMCMCNucleosomes",
4856 "version": "1.34.0",
4857 "sha256": "17jykk7mffdw5w2rn2bghkmx9yk8vj90vs31xyjhvpfj67n8d1cr",
4858 "depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "Rcpp", "S4Vectors", "Seqinfo", "consensusSeekeR"]
4859 },
4860 "RLMM": {
4861 "name": "RLMM",
4862 "version": "1.72.0",
4863 "sha256": "07a4nhwrk697h4k0asb6k53wykhqzgpr07nhzkg4ipy5jcr4yj69",
4864 "depends": ["MASS"]
4865 },
4866 "RLassoCox": {
4867 "name": "RLassoCox",
4868 "version": "1.18.0",
4869 "sha256": "1393fi1brfnbd1ygqw3ypfrfsv6nspz4fclvqr82pyvlj7wbrlfz",
4870 "depends": ["Matrix", "glmnet", "igraph", "survival"]
4871 },
4872 "RMassBank": {
4873 "name": "RMassBank",
4874 "version": "3.20.0",
4875 "sha256": "040fzq6gia3922lxgc8w7bnszyyr1yavpca1bzz7jq6rsi2rf2x6",
4876 "depends": ["Biobase", "ChemmineR", "MSnbase", "R_utils", "Rcpp", "S4Vectors", "XML", "assertthat", "data_table", "digest", "dplyr", "enviPat", "glue", "httr", "httr2", "logger", "mzR", "purrr", "rcdk", "readJDX", "readr", "rjson", "tibble", "tidyselect", "webchem", "yaml"]
4877 },
4878 "RNAAgeCalc": {
4879 "name": "RNAAgeCalc",
4880 "version": "1.22.0",
4881 "sha256": "0fqyiqpwn89ci15q3drvhfgwciiqmc1x82byrjvvjks9h1vmpsb2",
4882 "depends": ["AnnotationDbi", "SummarizedExperiment", "ggplot2", "impute", "org_Hs_eg_db", "recount"]
4883 },
4884 "RNASeqPower": {
4885 "name": "RNASeqPower",
4886 "version": "1.50.0",
4887 "sha256": "1gv85ngbfmkb0xpx0h27yn6lybxynp3gd3nl18qdjcf4bzs4kx9h",
4888 "depends": []
4889 },
4890 "RNAmodR": {
4891 "name": "RNAmodR",
4892 "version": "1.24.0",
4893 "sha256": "0jlvsyyb3pasq72va9imgmsmgwlvngv9d79890gx40rwm8n853cv",
4894 "depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "Modstrings", "RColorBrewer", "ROCR", "Rsamtools", "S4Vectors", "Seqinfo", "colorRamps", "ggplot2", "matrixStats", "reshape2", "rtracklayer", "txdbmaker"]
4895 },
4896 "RNAmodR_AlkAnilineSeq": {
4897 "name": "RNAmodR.AlkAnilineSeq",
4898 "version": "1.24.0",
4899 "sha256": "1m5nzviikbi6jx6pjzfpg48qxpy4synn22kipyfbxi23cnh6f2zw",
4900 "depends": ["BiocGenerics", "GenomicRanges", "Gviz", "IRanges", "RNAmodR", "S4Vectors"]
4901 },
4902 "RNAmodR_ML": {
4903 "name": "RNAmodR.ML",
4904 "version": "1.24.0",
4905 "sha256": "04xndcmilalhk27c41a0h7s8whn2v48x7968w6mw8g1g5d3v87jj",
4906 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "RNAmodR", "S4Vectors", "ranger"]
4907 },
4908 "RNAmodR_RiboMethSeq": {
4909 "name": "RNAmodR.RiboMethSeq",
4910 "version": "1.24.0",
4911 "sha256": "0wnayl13fpiy94zn6mn6k2rj9fc1v8iayb2hcarq1zqb06q0jgbp",
4912 "depends": ["BiocGenerics", "GenomicRanges", "Gviz", "IRanges", "RNAmodR", "S4Vectors"]
4913 },
4914 "RNAsense": {
4915 "name": "RNAsense",
4916 "version": "1.24.0",
4917 "sha256": "0c3d5694pvwvnandwqy8ikk7477w3myrc4nr13l66m6k6xppfc86",
4918 "depends": ["NBPSeq", "SummarizedExperiment", "ggplot2", "qvalue"]
4919 },
4920 "RNAseqCovarImpute": {
4921 "name": "RNAseqCovarImpute",
4922 "version": "1.8.0",
4923 "sha256": "0nw3aqjm1yp6vrbx09mmi5wg94wiaha753lp4rkkgifpyzcknd1a",
4924 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "dplyr", "edgeR", "foreach", "limma", "magrittr", "mice", "rlang"]
4925 },
4926 "ROC": {
4927 "name": "ROC",
4928 "version": "1.86.0",
4929 "sha256": "1n3h77zh7k9mk99g76lb85j5zrk8b0zf8cwgag5xira0d3kggdwm",
4930 "depends": ["knitr"]
4931 },
4932 "ROCpAI": {
4933 "name": "ROCpAI",
4934 "version": "1.22.0",
4935 "sha256": "0zx18q157xrham37ippaihvzz8ajdcidwrs5pimwy7ds4grz3jcp",
4936 "depends": ["SummarizedExperiment", "boot", "fission", "knitr"]
4937 },
4938 "ROSeq": {
4939 "name": "ROSeq",
4940 "version": "1.22.0",
4941 "sha256": "01a7wc16j41gl781yan0nqxvrnr9xiqhlbpj5qnp50bhbw0nqxan",
4942 "depends": ["edgeR", "limma", "pbmcapply"]
4943 },
4944 "ROTS": {
4945 "name": "ROTS",
4946 "version": "2.2.0",
4947 "sha256": "0nw0g72hl519k6d7zwxrpzwbw792w6m0wva0c2cnmk7wz3f4sss9",
4948 "depends": ["Biobase", "BiocParallel", "Rcpp", "lme4"]
4949 },
4950 "ROntoTools": {
4951 "name": "ROntoTools",
4952 "version": "2.38.0",
4953 "sha256": "02j46cwd3cg7dqgxv93bxh1mqd92sb63vhh8rlwjs46jv1a03ps7",
4954 "depends": ["KEGGREST", "KEGGgraph", "Rgraphviz", "boot", "graph"]
4955 },
4956 "RPA": {
4957 "name": "RPA",
4958 "version": "1.66.0",
4959 "sha256": "0wmyircvklh9a055aqj4wav1bjzg2r5c7k0kj4smhjln3nl42rd2",
4960 "depends": ["BiocGenerics", "BiocStyle", "affy", "phyloseq", "rmarkdown"]
4961 },
4962 "RProtoBufLib": {
4963 "name": "RProtoBufLib",
4964 "version": "2.22.0",
4965 "sha256": "096mh27jbmbarjprm82dyxr9x32qsd4vsb3f5x7m06f6g6a6l5kc",
4966 "depends": []
4967 },
4968 "RRHO": {
4969 "name": "RRHO",
4970 "version": "1.50.0",
4971 "sha256": "1pdya9fk9c9w8qmq7gj7cbx8a32bm4r1r5i65fp6s3hwpk9k9zca",
4972 "depends": ["VennDiagram"]
4973 },
4974 "RSVSim": {
4975 "name": "RSVSim",
4976 "version": "1.50.0",
4977 "sha256": "1kcykpbpviiwnin4iap512v1qzlxfx2isxwz1nxjcc8sx75q47ha",
4978 "depends": ["Biostrings", "GenomicRanges", "IRanges", "ShortRead"]
4979 },
4980 "RSeqAn": {
4981 "name": "RSeqAn",
4982 "version": "1.30.0",
4983 "sha256": "0izhszw6vvhi8g3izcs7868r4ikmw11i5zphqp0prnshdv9scc73",
4984 "depends": ["Rcpp"]
4985 },
4986 "RTCA": {
4987 "name": "RTCA",
4988 "version": "1.62.0",
4989 "sha256": "0k0sv047laxvmcqh3fd9qhawy8nvl69s0qljs5zfv4zwzz7ksf17",
4990 "depends": ["Biobase", "RColorBrewer", "gtools"]
4991 },
4992 "RTCGA": {
4993 "name": "RTCGA",
4994 "version": "1.40.0",
4995 "sha256": "18j0kqa1wavhsn6wxx622s021af87kwfnh0yry75b8632fjym8vn",
4996 "depends": ["RCurl", "XML", "assertthat", "data_table", "dplyr", "ggplot2", "ggthemes", "htmltools", "knitr", "purrr", "rmarkdown", "rvest", "scales", "stringi", "survival", "survminer", "viridis", "xml2"]
4997 },
4998 "RTCGAToolbox": {
4999 "name": "RTCGAToolbox",
5000 "version": "2.40.0",
5001 "sha256": "15h7xahsmpmznnh9n466pbkp094kxaw8x144q4mmy5bx5s7ng6nk",
5002 "depends": ["BiocGenerics", "DelayedArray", "GenomicRanges", "RCurl", "RJSONIO", "RaggedExperiment", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TCGAutils", "data_table", "httr", "rvest", "stringr"]
5003 },
5004 "RTN": {
5005 "name": "RTN",
5006 "version": "2.34.0",
5007 "sha256": "0pqax97c4v2zbs02m8zpikqgdpjxc44vfhangb9ncvnbpfrpd6vy",
5008 "depends": ["IRanges", "RedeR", "S4Vectors", "SummarizedExperiment", "car", "data_table", "igraph", "limma", "minet", "mixtools", "pheatmap", "pwr", "snow", "viper"]
5009 },
5010 "RTNduals": {
5011 "name": "RTNduals",
5012 "version": "1.34.0",
5013 "sha256": "04q5gbd2fg6zdkbymqnsb6gapq5b42p3rc4hjrc8xjypflwdgm78",
5014 "depends": ["RTN"]
5015 },
5016 "RTNsurvival": {
5017 "name": "RTNsurvival",
5018 "version": "1.34.0",
5019 "sha256": "0rh2x9hx9lzqkisxxvqhlk6vk5bni86d3fw1mjv0fsjkdsziky8l",
5020 "depends": ["RColorBrewer", "RTN", "RTNduals", "data_table", "dunn_test", "egg", "ggplot2", "pheatmap", "scales", "survival"]
5021 },
5022 "RTopper": {
5023 "name": "RTopper",
5024 "version": "1.56.0",
5025 "sha256": "0jl0xp3c60pl5lvn11fscazm7pns2gayix7pf69b29a4n59kxswv",
5026 "depends": ["Biobase", "limma", "multtest"]
5027 },
5028 "RUCova": {
5029 "name": "RUCova",
5030 "version": "1.2.0",
5031 "sha256": "0nx26i14041gqacx91agrml25vr3phacvzvd0diqyrl39idysqm5",
5032 "depends": ["ComplexHeatmap", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "circlize", "dplyr", "fastDummies", "ggplot2", "magrittr", "stringr", "tibble", "tidyr", "tidyverse"]
5033 },
5034 "RUVSeq": {
5035 "name": "RUVSeq",
5036 "version": "1.44.0",
5037 "sha256": "19g3n211dsc019ahpfpwkk4i8clf8jb4fp6wgf7ja3y1xaqmmd5m",
5038 "depends": ["Biobase", "EDASeq", "MASS", "edgeR"]
5039 },
5040 "RUVcorr": {
5041 "name": "RUVcorr",
5042 "version": "1.42.0",
5043 "sha256": "1wkbpdh8lhkyrxjk9afdyy4l6r393pi7fvaww9zh9mlk78hsr8vx",
5044 "depends": ["BiocParallel", "MASS", "bladderbatch", "corrplot", "gridExtra", "lattice", "psych", "reshape2", "snowfall"]
5045 },
5046 "RUVnormalize": {
5047 "name": "RUVnormalize",
5048 "version": "1.44.0",
5049 "sha256": "1wa8j3qmc9hz2yrm3gh7qjlfayizc7sw5ay98nincwz96ayiqsdi",
5050 "depends": ["Biobase", "RUVnormalizeData"]
5051 },
5052 "RVS": {
5053 "name": "RVS",
5054 "version": "1.32.0",
5055 "sha256": "129wq03zy5vcdiv7990i2hvh4pl0mk9zjq7gbay5k5ciynks7jy7",
5056 "depends": ["GENLIB", "R_utils", "gRain", "kinship2", "snpStats"]
5057 },
5058 "RadioGx": {
5059 "name": "RadioGx",
5060 "version": "2.14.0",
5061 "sha256": "1q76k68zry1cap7is6sxhazrxsv5d49mr863mrzhvnwiz03yzyab",
5062 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "CoreGx", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "assertthat", "caTools", "data_table", "downloader", "magicaxis", "matrixStats", "reshape2", "scales"]
5063 },
5064 "RaggedExperiment": {
5065 "name": "RaggedExperiment",
5066 "version": "1.34.0",
5067 "sha256": "18mbdd0cd975q2540cdnrfdirc8khg4mqbi8z4zkabal83gzqs2s",
5068 "depends": ["BiocBaseUtils", "BiocGenerics", "GenomicRanges", "IRanges", "Matrix", "MatrixGenerics", "S4Vectors", "Seqinfo", "SummarizedExperiment"]
5069 },
5070 "RankProd": {
5071 "name": "RankProd",
5072 "version": "3.36.0",
5073 "sha256": "0pvmairya5abkcspwmdh9x0xd46q7sl8pcgzwcqh6gllf6halqqv",
5074 "depends": ["Rmpfr", "gmp"]
5075 },
5076 "RareVariantVis": {
5077 "name": "RareVariantVis",
5078 "version": "2.38.0",
5079 "sha256": "07afvjijbjfqvbzmg78fpp7ingwvvx9h203c6bczbnvi4n96y1p6",
5080 "depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BiocGenerics", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "GenomicScores", "IRanges", "S4Vectors", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "VariantAnnotation", "googleVis", "gtools", "phastCons100way_UCSC_hg19"]
5081 },
5082 "Rarr": {
5083 "name": "Rarr",
5084 "version": "1.10.0",
5085 "sha256": "048yv469xrmklmjpz4illrafaf6l56p68jkhsvcjzsx3368bw0w2",
5086 "depends": ["BiocGenerics", "DelayedArray", "R_utils", "curl", "jsonlite", "paws_storage"]
5087 },
5088 "RbcBook1": {
5089 "name": "RbcBook1",
5090 "version": "1.78.0",
5091 "sha256": "1i39kvws4dr9qryzqf9rl463bpjwvpszk8x6qvi7cpgmrd9zb8pn",
5092 "depends": ["Biobase", "graph", "rpart"]
5093 },
5094 "Rbec": {
5095 "name": "Rbec",
5096 "version": "1.18.0",
5097 "sha256": "1wgc70g5lkjfx70g9jv1mnxkkm70an8y2zkv3cgn4i1iwmipcvii",
5098 "depends": ["Rcpp", "dada2", "doParallel", "foreach", "ggplot2", "readr"]
5099 },
5100 "Rbowtie": {
5101 "name": "Rbowtie",
5102 "version": "1.50.0",
5103 "sha256": "13hlr09hshsgwf5694mhrmfxk3nqnl2c58bc4kjsrwngakbi1ziy",
5104 "depends": []
5105 },
5106 "Rbowtie2": {
5107 "name": "Rbowtie2",
5108 "version": "2.16.0",
5109 "sha256": "0gjicqyl3kmadm0ki2n22231dcx5dijj5wz50fkyc6n0a3xvgsx5",
5110 "depends": ["Rsamtools", "magrittr"]
5111 },
5112 "RbowtieCuda": {
5113 "name": "RbowtieCuda",
5114 "version": "1.2.0",
5115 "sha256": "05ca0wn7z44rkj885l5h1ybsjn4kl2x1gy9cy98p63gws1xwq6h0",
5116 "depends": []
5117 },
5118 "Rbwa": {
5119 "name": "Rbwa",
5120 "version": "1.14.0",
5121 "sha256": "1rkx6smq6cpi3ghcygvwvgq49d0grn3m0sw5jnl0mxqm8ygfr290",
5122 "depends": []
5123 },
5124 "RcisTarget": {
5125 "name": "RcisTarget",
5126 "version": "1.29.0",
5127 "sha256": "0y028c8vrfcqy9ddn7p4y285bjb3hw5n1rwax4ggwbf18cfk1ql2",
5128 "depends": ["AUCell", "BiocGenerics", "GSEABase", "GenomeInfoDb", "GenomicRanges", "R_utils", "S4Vectors", "SummarizedExperiment", "arrow", "data_table", "dplyr", "tibble", "zoo"]
5129 },
5130 "Rcollectl": {
5131 "name": "Rcollectl",
5132 "version": "1.10.0",
5133 "sha256": "0inkixnlvfs5qp8ywffaamvhk3mz2mcl3kcvvzs49jf4j7376lbh",
5134 "depends": ["ggplot2", "lubridate", "processx"]
5135 },
5136 "Rcpi": {
5137 "name": "Rcpi",
5138 "version": "1.46.0",
5139 "sha256": "1dx8im6525sj8496czmx346cw30ijyj9i8p0jzsvssw6994pnyz4",
5140 "depends": ["Biostrings", "GOSemSim", "curl", "doParallel", "foreach", "httr2", "jsonlite", "rlang"]
5141 },
5142 "Rcwl": {
5143 "name": "Rcwl",
5144 "version": "1.26.0",
5145 "sha256": "0a6i3g3da7zkrxqphvaamg10f3s7qjynhn65w3v342gdbbk67b1w",
5146 "depends": ["BiocParallel", "DiagrammeR", "R_utils", "S4Vectors", "basilisk", "batchtools", "codetools", "shiny", "yaml"]
5147 },
5148 "RcwlPipelines": {
5149 "name": "RcwlPipelines",
5150 "version": "1.26.0",
5151 "sha256": "01c95nxvwi6lhbvc33a3797hsvq7w6rswnxwg5v44fc1zg002mlf",
5152 "depends": ["BiocFileCache", "Rcwl", "S4Vectors", "git2r", "httr", "rappdirs"]
5153 },
5154 "Rdisop": {
5155 "name": "Rdisop",
5156 "version": "1.70.0",
5157 "sha256": "0jkm610772hyg63q5wmvrbwcbbyfzryii6ab37fv79qy7k56l8wn",
5158 "depends": ["Rcpp"]
5159 },
5160 "ReUseData": {
5161 "name": "ReUseData",
5162 "version": "1.10.0",
5163 "sha256": "1xzi5vnr7k6ijssp66ii95nswyly1c8yc76gqw6vhrgyzawwh503",
5164 "depends": ["BiocFileCache", "Rcwl", "RcwlPipelines", "S4Vectors", "basilisk", "jsonlite", "yaml"]
5165 },
5166 "ReactomeGSA": {
5167 "name": "ReactomeGSA",
5168 "version": "1.24.0",
5169 "sha256": "1nqz3xmxriybdx6yvdhah2sxz8mn44gplgssdcw5f9nl7aww9a0k",
5170 "depends": ["Biobase", "BiocSingular", "RColorBrewer", "SummarizedExperiment", "dplyr", "ggplot2", "gplots", "httr", "igraph", "jsonlite", "progress", "tidyr"]
5171 },
5172 "ReactomePA": {
5173 "name": "ReactomePA",
5174 "version": "1.54.0",
5175 "sha256": "0vh8knsczh537r9qk6h3jyabd6x4c4g2j7fz8qsflhl7bs20n4h9",
5176 "depends": ["AnnotationDbi", "DOSE", "enrichplot", "ggplot2", "ggraph", "graphite", "gson", "igraph", "reactome_db", "yulab_utils"]
5177 },
5178 "ReadqPCR": {
5179 "name": "ReadqPCR",
5180 "version": "1.56.0",
5181 "sha256": "1m5yh01f3xgvs5fbyxaagfx3q25sxc77z9mgr293rq4436zvsgyy",
5182 "depends": ["Biobase"]
5183 },
5184 "RedeR": {
5185 "name": "RedeR",
5186 "version": "3.6.0",
5187 "sha256": "0sqqhr9blgarvi7dxyxmk0ikj9grqj9zbz9yqb55qhr67mzl3d3i",
5188 "depends": ["igraph", "scales"]
5189 },
5190 "RedisParam": {
5191 "name": "RedisParam",
5192 "version": "1.12.0",
5193 "sha256": "0d88g6mxlifc86ar2695p5gjrbafc0vgjmbxayv9x0h5b0c9hg8z",
5194 "depends": ["BiocParallel", "futile_logger", "redux", "withr"]
5195 },
5196 "ReducedExperiment": {
5197 "name": "ReducedExperiment",
5198 "version": "1.2.0",
5199 "sha256": "114hwvqpfw0lf4hxjdmqsvmlsllzxvf8s3843nklz0pnhw8a1hxr",
5200 "depends": ["BiocGenerics", "BiocParallel", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "WGCNA", "biomaRt", "car", "clusterProfiler", "ggplot2", "ica", "lme4", "lmerTest", "moments", "msigdbr", "patchwork", "pheatmap"]
5201 },
5202 "RegEnrich": {
5203 "name": "RegEnrich",
5204 "version": "1.20.0",
5205 "sha256": "1q40yk4lmnyqwzj2mjrhl6gb03r20kyw8dy8543n5isbgd24i08d",
5206 "depends": ["BiocParallel", "BiocSet", "BiocStyle", "DESeq2", "DOSE", "S4Vectors", "SummarizedExperiment", "WGCNA", "dplyr", "fgsea", "ggplot2", "limma", "magrittr", "randomForest", "reshape2", "tibble"]
5207 },
5208 "RegionalST": {
5209 "name": "RegionalST",
5210 "version": "1.8.0",
5211 "sha256": "19cghwn3jff5d8zsswfq1rnj3fxc6w86n4xmxdyzw2ja7868lmv0",
5212 "depends": ["BayesSpace", "BiocStyle", "RColorBrewer", "S4Vectors", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "TOAST", "assertthat", "colorspace", "dplyr", "fgsea", "ggplot2", "gridExtra", "magrittr", "scater", "shiny", "tibble"]
5213 },
5214 "ReportingTools": {
5215 "name": "ReportingTools",
5216 "version": "2.50.0",
5217 "sha256": "09bj554ygii77c04yf10lvsnkg2r3lngi238rh5zgwadi47rcy9w",
5218 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "Category", "DESeq2", "GOstats", "GSEABase", "IRanges", "PFAM_db", "R_utils", "XML", "annotate", "edgeR", "ggbio", "ggplot2", "hwriter", "knitr", "lattice", "limma"]
5219 },
5220 "ResidualMatrix": {
5221 "name": "ResidualMatrix",
5222 "version": "1.20.0",
5223 "sha256": "14qx2yb0ahfjjmqlcirar51l5if8wh6v7g95bvr3n2ak2i3arzhb",
5224 "depends": ["DelayedArray", "Matrix", "S4Vectors"]
5225 },
5226 "RgnTX": {
5227 "name": "RgnTX",
5228 "version": "1.11.1",
5229 "sha256": "1va4nw2gbhkhrryfglc0chgp9ncgmjk8852sf6vgf4fq8jqla5a2",
5230 "depends": ["GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "TxDb_Hsapiens_UCSC_hg19_knownGene", "ggplot2", "regioneR"]
5231 },
5232 "Rgraphviz": {
5233 "name": "Rgraphviz",
5234 "version": "2.54.0",
5235 "sha256": "0mjv95nwfsak6wk0dnjp75n9xklynrbsvhhk6i3xaifgyg0d18pr",
5236 "depends": ["graph"]
5237 },
5238 "Rhdf5lib": {
5239 "name": "Rhdf5lib",
5240 "version": "1.32.0",
5241 "sha256": "1i0g82j7q6j1hp9c8vc6sv50ph1n028hpc8wfsifx4cc1w5hhvmy",
5242 "depends": []
5243 },
5244 "Rhisat2": {
5245 "name": "Rhisat2",
5246 "version": "1.26.0",
5247 "sha256": "01i6085rl7in0xslm872m1ahnj39hks3b2frplyxw6i5lznk66bf",
5248 "depends": ["GenomicRanges", "SGSeq", "txdbmaker"]
5249 },
5250 "Rhtslib": {
5251 "name": "Rhtslib",
5252 "version": "3.6.0",
5253 "sha256": "14k6v897ccah78lw41wd4c37wz048l2963sv3cvvgvrrpbgw0pwb",
5254 "depends": []
5255 },
5256 "RiboCrypt": {
5257 "name": "RiboCrypt",
5258 "version": "1.16.0",
5259 "sha256": "1l6lmr7w8sq6g95hqi9n4cdg9v8gbs2bscd4s57dlrnbx46y4ncy",
5260 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "ComplexHeatmap", "DT", "GenomicFeatures", "GenomicRanges", "IRanges", "NGLVieweR", "ORFik", "RCurl", "Seqinfo", "bslib", "cowplot", "crosstalk", "data_table", "dplyr", "fst", "ggplot2", "htmlwidgets", "httr", "jsonlite", "knitr", "markdown", "plotly", "rclipboard", "rlang", "rtracklayer", "shiny", "shinyWidgets", "shinycssloaders", "shinyhelper", "shinyjqui", "shinyjs", "stringr", "writexl"]
5261 },
5262 "RiboDiPA": {
5263 "name": "RiboDiPA",
5264 "version": "1.18.0",
5265 "sha256": "1cbfwwm1i67qhk8rnqvgpf18gz4dcmagxs06nff76r96kfvyp0gg",
5266 "depends": ["BiocFileCache", "BiocGenerics", "DESeq2", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rcpp", "Rsamtools", "S4Vectors", "data_table", "doParallel", "elitism", "foreach", "ggplot2", "matrixStats", "qvalue", "reldist", "txdbmaker"]
5267 },
5268 "RiboProfiling": {
5269 "name": "RiboProfiling",
5270 "version": "1.39.1",
5271 "sha256": "0yqmk7cgfahyiy4gcrfr4iyf9sa6sl42h41xaj65b4dx6mhgqrs9",
5272 "depends": ["BiocGenerics", "Biostrings", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "data_table", "ggbio", "ggplot2", "plyr", "reshape2", "rtracklayer", "sqldf"]
5273 },
5274 "Rigraphlib": {
5275 "name": "Rigraphlib",
5276 "version": "1.2.0",
5277 "sha256": "190h2gjwy913422c0j3b368bvf801nggqx6a620z05ivw2w1yad4",
5278 "depends": ["biocmake"]
5279 },
5280 "Rmagpie": {
5281 "name": "Rmagpie",
5282 "version": "1.66.0",
5283 "sha256": "12rkh9xwxgnpa46skin89z2w0xi352k539n7w4ybqbdlwfwwvqk3",
5284 "depends": ["Biobase", "e1071", "kernlab", "pamr"]
5285 },
5286 "Rmmquant": {
5287 "name": "Rmmquant",
5288 "version": "1.28.0",
5289 "sha256": "1qwch1kgws7zvgvxavyh885i0jfs24yl9qnmaav1xycl5zmw8dml",
5290 "depends": ["BiocStyle", "DESeq2", "GenomicRanges", "Rcpp", "S4Vectors", "SummarizedExperiment", "TBX20BamSubset", "TxDb_Mmusculus_UCSC_mm9_knownGene", "apeglm", "devtools", "org_Mm_eg_db"]
5291 },
5292 "RnBeads": {
5293 "name": "RnBeads",
5294 "version": "2.28.0",
5295 "sha256": "00vfljydr8f9y1d4vh08v2ziwyr7gb36kqzc5xc0nb3f2w66f80d",
5296 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "cluster", "ff", "fields", "ggplot2", "gplots", "gridExtra", "illuminaio", "limma", "matrixStats", "methylumi", "plyr", "reshape2"]
5297 },
5298 "RnaSeqSampleSize": {
5299 "name": "RnaSeqSampleSize",
5300 "version": "2.20.0",
5301 "sha256": "18s1xqf3sfj0cicypq18d39znx5prsr5j3incgxrhh7nlcq2llkq",
5302 "depends": ["KEGGREST", "Rcpp", "RnaSeqSampleSizeData", "SummarizedExperiment", "biomaRt", "dplyr", "edgeR", "ggplot2", "ggpubr", "heatmap3", "matlab", "recount", "tidyr", "tidyselect"]
5303 },
5304 "Rnits": {
5305 "name": "Rnits",
5306 "version": "1.44.0",
5307 "sha256": "0a6sqz5bc605sw8wvz0jsy7xly8cz992vc9a667xkxsf6xa4a3wl",
5308 "depends": ["Biobase", "affy", "boot", "ggplot2", "impute", "limma", "qvalue", "reshape2"]
5309 },
5310 "RolDE": {
5311 "name": "RolDE",
5312 "version": "1.14.0",
5313 "sha256": "1bn0h9v27azw9gmdnbsa66mqg9jbw85cbcb0zv8kmxmycvgxnxwa",
5314 "depends": ["ROTS", "SummarizedExperiment", "doParallel", "doRNG", "foreach", "matrixStats", "nlme", "qvalue", "rngtools"]
5315 },
5316 "Rqc": {
5317 "name": "Rqc",
5318 "version": "1.44.0",
5319 "sha256": "1kprj05y5y5k78gdsffn0j9zjg8c466c9x50fqy7mfps4z9rdcwi",
5320 "depends": ["BiocGenerics", "BiocParallel", "BiocStyle", "Biostrings", "GenomicAlignments", "GenomicFiles", "IRanges", "Rcpp", "Rsamtools", "S4Vectors", "ShortRead", "biovizBase", "ggplot2", "knitr", "markdown", "plyr", "reshape2", "shiny"]
5321 },
5322 "Rsamtools": {
5323 "name": "Rsamtools",
5324 "version": "2.26.0",
5325 "sha256": "1sbb95xknaj2jks0wlcj1zr43i23l27j5mjsihyk9q1kxybhmnlw",
5326 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "Rhtslib", "S4Vectors", "Seqinfo", "XVector", "bitops"]
5327 },
5328 "Rsubread": {
5329 "name": "Rsubread",
5330 "version": "2.24.0",
5331 "sha256": "14i2qm3wgzl8kj3d2kkppzlvvpkn27qggz6b44kwxhi5ns8rn7zq",
5332 "depends": ["Matrix"]
5333 },
5334 "Rtpca": {
5335 "name": "Rtpca",
5336 "version": "1.20.0",
5337 "sha256": "0971zm4rcva3q6bdz5zgbm5y9hsjhz5x52sjvaa7i624x4ajs1z3",
5338 "depends": ["Biobase", "dplyr", "fdrtool", "ggplot2", "pROC", "tibble", "tidyr"]
5339 },
5340 "Rvisdiff": {
5341 "name": "Rvisdiff",
5342 "version": "1.8.0",
5343 "sha256": "0ayzc1zprrlkv1hvzrc8x9h25v5rmfz1kkrkszvbn6gka7ka2zqf",
5344 "depends": ["edgeR"]
5345 },
5346 "S4Arrays": {
5347 "name": "S4Arrays",
5348 "version": "1.10.0",
5349 "sha256": "1vbvr0vfwl36i7dv09ibzs7mkfyzlzfl475rrkss377zsz7gbsjh",
5350 "depends": ["BiocGenerics", "IRanges", "Matrix", "S4Vectors", "abind"]
5351 },
5352 "S4Vectors": {
5353 "name": "S4Vectors",
5354 "version": "0.48.0",
5355 "sha256": "1vs1n92d915gpvrl4y867gym9q1rsz5b0pkajndy58c329zx4m2v",
5356 "depends": ["BiocGenerics"]
5357 },
5358 "SAIGEgds": {
5359 "name": "SAIGEgds",
5360 "version": "2.10.0",
5361 "sha256": "0y4zkdf6khicaxbm7d98pvbd083c4624cc290xc1sssxf8nxrahn",
5362 "depends": ["CompQuadForm", "Matrix", "Rcpp", "RcppArmadillo", "RcppParallel", "SKAT", "SeqArray", "gdsfmt", "survey"]
5363 },
5364 "SANTA": {
5365 "name": "SANTA",
5366 "version": "2.46.0",
5367 "sha256": "0saxpxbxwyzl4a8w7z550df5x1gzpg56si7hzv6r6v9arcc39i50",
5368 "depends": ["Matrix", "igraph"]
5369 },
5370 "SBGNview": {
5371 "name": "SBGNview",
5372 "version": "1.24.0",
5373 "sha256": "1qyxd55c1w8kv5dchjcl6kfg96sq52y7fvinxssq9dacwk0p698w",
5374 "depends": ["AnnotationDbi", "KEGGREST", "Rdpack", "SBGNview_data", "SummarizedExperiment", "bookdown", "httr", "igraph", "knitr", "pathview", "rmarkdown", "rsvg", "xml2"]
5375 },
5376 "SBMLR": {
5377 "name": "SBMLR",
5378 "version": "2.6.0",
5379 "sha256": "0qy698n59i9c4lhlc1nhs7p9pcg1c7y818vyw23piyk8x27rd2wq",
5380 "depends": ["XML", "deSolve"]
5381 },
5382 "SC3": {
5383 "name": "SC3",
5384 "version": "1.38.0",
5385 "sha256": "1ysxbarqrw8pbg2fm66nsyjxshi0c14svydwc3yj2ldlv25n7kmi",
5386 "depends": ["BiocGenerics", "ROCR", "Rcpp", "RcppArmadillo", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "WriteXLS", "cluster", "doParallel", "doRNG", "e1071", "foreach", "ggplot2", "pheatmap", "robustbase", "rrcov", "shiny"]
5387 },
5388 "SCAN_UPC": {
5389 "name": "SCAN.UPC",
5390 "version": "2.52.0",
5391 "sha256": "0kvzg4i7yl0d1p0plwzbisl6z3kjn46avaa86g5y9jxj4vwhgb9p",
5392 "depends": ["Biobase", "Biostrings", "GEOquery", "IRanges", "MASS", "affy", "affyio", "foreach", "oligo", "sva"]
5393 },
5394 "SCANVIS": {
5395 "name": "SCANVIS",
5396 "version": "1.24.0",
5397 "sha256": "10a7iw5iqmnlhn74000gbaqnbkp98l0ar4cin8fqgrbmj5fmm0ha",
5398 "depends": ["IRanges", "RCurl", "plotrix", "rtracklayer"]
5399 },
5400 "SCArray": {
5401 "name": "SCArray",
5402 "version": "1.18.0",
5403 "sha256": "1bxbjl5445glqj6vsl6i0z1rrkc6k91glhg343ykzz2hhjz6xifd",
5404 "depends": ["BiocParallel", "BiocSingular", "DelayedArray", "DelayedMatrixStats", "Matrix", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "gdsfmt"]
5405 },
5406 "SCArray_sat": {
5407 "name": "SCArray.sat",
5408 "version": "1.9.0",
5409 "sha256": "0yd5pinqbdi5pq1vcbabwqnwhw3vrk3qbdyrqi82hib5zqxzw9zr",
5410 "depends": ["BiocGenerics", "BiocParallel", "BiocSingular", "DelayedArray", "Matrix", "S4Vectors", "SCArray", "Seurat", "SeuratObject", "SummarizedExperiment", "gdsfmt"]
5411 },
5412 "SCBN": {
5413 "name": "SCBN",
5414 "version": "1.28.0",
5415 "sha256": "0snnmajjqlrnpcib472i0g9kbsxw9f63gxjj0i58x4xpw9skia57",
5416 "depends": []
5417 },
5418 "SCFA": {
5419 "name": "SCFA",
5420 "version": "1.20.0",
5421 "sha256": "0p9i44qbff4xwrr7l1v9p7limwn7ahdx0ca47alqqz6nkig36kbr",
5422 "depends": ["BiocParallel", "Matrix", "RhpcBLASctl", "cluster", "coro", "glmnet", "igraph", "matrixStats", "psych", "survival", "torch"]
5423 },
5424 "SCOPE": {
5425 "name": "SCOPE",
5426 "version": "1.22.0",
5427 "sha256": "0jf4xd23cx4xafjzcd7jdlk2m57sa3v62fc3zlh71gpz9vbgc82n",
5428 "depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BiocGenerics", "Biostrings", "DNAcopy", "DescTools", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "doParallel", "foreach", "gplots"]
5429 },
5430 "SCnorm": {
5431 "name": "SCnorm",
5432 "version": "1.32.0",
5433 "sha256": "17shqmq81na16wkd7dfjajrhv0mi8zmb9nf5cjns3s4ja2392pja",
5434 "depends": ["BiocGenerics", "BiocParallel", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "cluster", "data_table", "forcats", "ggplot2", "moments", "quantreg"]
5435 },
5436 "SDAMS": {
5437 "name": "SDAMS",
5438 "version": "1.30.0",
5439 "sha256": "1arr0ld2nr6iqqc1h9v35cpn5zllbbqbbhjza6m2jrwgx7b6j973",
5440 "depends": ["SummarizedExperiment", "qvalue", "trust"]
5441 },
5442 "SELEX": {
5443 "name": "SELEX",
5444 "version": "1.42.0",
5445 "sha256": "0mpggx9dbq16s5c7qpx5rgbjim5a9hs899fmf65v1slgbnikwazq",
5446 "depends": ["Biostrings", "rJava"]
5447 },
5448 "SETA": {
5449 "name": "SETA",
5450 "version": "1.0.0",
5451 "sha256": "00i8cg086iv31bri3b3pwiz8ajxyxnnszarinsdcr3kan2gaaxa6",
5452 "depends": ["MASS", "Matrix", "SingleCellExperiment", "dplyr", "rlang", "tidygraph"]
5453 },
5454 "SEraster": {
5455 "name": "SEraster",
5456 "version": "1.2.0",
5457 "sha256": "0ff953kwyq9flmnbpyyfal4n8p4j29ha1c4blr1l317m7sj6idcf",
5458 "depends": ["BiocParallel", "Matrix", "SpatialExperiment", "SummarizedExperiment", "ggplot2", "rearrr", "sf"]
5459 },
5460 "SEtools": {
5461 "name": "SEtools",
5462 "version": "1.24.0",
5463 "sha256": "1j161pgm0gb59hw8x8r60zxh1xn20wp8qkw3ls6pvryjgxiqm1ky",
5464 "depends": ["BiocParallel", "DESeq2", "Matrix", "S4Vectors", "SummarizedExperiment", "circlize", "data_table", "edgeR", "openxlsx", "pheatmap", "sechm", "sva"]
5465 },
5466 "SGSeq": {
5467 "name": "SGSeq",
5468 "version": "1.44.0",
5469 "sha256": "04sk9q7v22p1hc7znaa2fn390y5pn1nj0ayjb0b3746klsyxxc11",
5470 "depends": ["AnnotationDbi", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RUnit", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "igraph", "rtracklayer"]
5471 },
5472 "SIAMCAT": {
5473 "name": "SIAMCAT",
5474 "version": "2.14.0",
5475 "sha256": "0czzgi1kxy4la4kbw7s6px53lp6wzkdmqlpc675q90c1nmqja1y1",
5476 "depends": ["LiblineaR", "PRROC", "RColorBrewer", "beanplot", "corrplot", "glmnet", "gridBase", "gridExtra", "infotheo", "lgr", "lmerTest", "matrixStats", "mlr3", "mlr3learners", "mlr3tuning", "pROC", "paradox", "phyloseq", "progress", "scales", "stringr"]
5477 },
5478 "SICtools": {
5479 "name": "SICtools",
5480 "version": "1.40.0",
5481 "sha256": "0qrs93igg20i2zk7gcmgw54q0khp9ak7b0q6bvm7l3hjkl0lipdb",
5482 "depends": ["Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "doParallel", "matrixStats", "plyr", "stringr"]
5483 },
5484 "SIM": {
5485 "name": "SIM",
5486 "version": "1.80.0",
5487 "sha256": "1hy4ik6mac7rqchcr3pssj41lsgkfcw0mifkgkhw3sw43bfnh611",
5488 "depends": ["globaltest", "quantreg", "quantsmooth"]
5489 },
5490 "SIMAT": {
5491 "name": "SIMAT",
5492 "version": "1.42.0",
5493 "sha256": "1bwwip4wszs39yhdpwl14vcfrlq1aav1gmiijwnx5fl77vcfais5",
5494 "depends": ["Rcpp", "ggplot2", "mzR", "reshape2"]
5495 },
5496 "SIMD": {
5497 "name": "SIMD",
5498 "version": "1.28.0",
5499 "sha256": "100z1ib7s739piwazppjrg7jpxfmqwd2kwahwxkjxj14pbc5gfhq",
5500 "depends": ["edgeR", "methylMnM", "statmod"]
5501 },
5502 "SIMLR": {
5503 "name": "SIMLR",
5504 "version": "1.36.0",
5505 "sha256": "1fxd14kf4ai2hm9nxragqisckca5spkk8slc4biy2viqj90nvvy2",
5506 "depends": ["Matrix", "RSpectra", "Rcpp", "RcppAnnoy", "pracma"]
5507 },
5508 "SLqPCR": {
5509 "name": "SLqPCR",
5510 "version": "1.76.0",
5511 "sha256": "0861cnnq1yybmq7gac2n2q6gfap3sfadacpdxzc73iqx54a6p2gf",
5512 "depends": []
5513 },
5514 "SMAD": {
5515 "name": "SMAD",
5516 "version": "1.26.0",
5517 "sha256": "0hh4lxrylmrn50211n3ggc2n4qgbcwh1qxrqbj7xwr2ficxym28b",
5518 "depends": ["Rcpp", "RcppAlgos", "dplyr", "magrittr", "tidyr"]
5519 },
5520 "SMITE": {
5521 "name": "SMITE",
5522 "version": "1.38.0",
5523 "sha256": "01x1wla1pqb361c75fjm4c5k7aajlw3l82ln5bbv9b8zmyjj54sv",
5524 "depends": ["AnnotationDbi", "BioNet", "Biobase", "GenomicRanges", "Hmisc", "IRanges", "KEGGREST", "S4Vectors", "geneLenDataBase", "ggplot2", "goseq", "igraph", "org_Hs_eg_db", "plyr", "reactome_db", "scales"]
5525 },
5526 "SNAGEE": {
5527 "name": "SNAGEE",
5528 "version": "1.50.0",
5529 "sha256": "1zpk0nklf83vjr1wganx0qzkz0ypkd485zffgpr726zcz14bixjl",
5530 "depends": ["SNAGEEdata"]
5531 },
5532 "SNPRelate": {
5533 "name": "SNPRelate",
5534 "version": "1.44.0",
5535 "sha256": "1xzvrasba81a51wc48gdh82qga9a43hjx79cdw7jgb9vsn6w4iha",
5536 "depends": ["RhpcBLASctl", "gdsfmt"]
5537 },
5538 "SNPediaR": {
5539 "name": "SNPediaR",
5540 "version": "1.36.0",
5541 "sha256": "1kis54hb6nm2hbyrpxf5cr02a1iq2bdgnxx7zak389mrsy54gv1n",
5542 "depends": ["RCurl", "jsonlite"]
5543 },
5544 "SNPhood": {
5545 "name": "SNPhood",
5546 "version": "1.40.0",
5547 "sha256": "1fy444c7qp1d47321jc4q5mzki53angwrxp2j0b9bswpi7aw79vj",
5548 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "DESeq2", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "SummarizedExperiment", "VariantAnnotation", "checkmate", "cluster", "data_table", "ggplot2", "gridExtra", "lattice", "reshape2", "scales"]
5549 },
5550 "SOMNiBUS": {
5551 "name": "SOMNiBUS",
5552 "version": "1.18.0",
5553 "sha256": "1ccskmmrcpl28amnh7nj2pkpa00vahrhg7c61vdgrl7mrym1kd9c",
5554 "depends": ["BiocManager", "GenomeInfoDb", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "VGAM", "annotatr", "bsseq", "data_table", "ggplot2", "mgcv", "reshape2", "rtracklayer", "tidyr", "yaml"]
5555 },
5556 "SPEM": {
5557 "name": "SPEM",
5558 "version": "1.50.0",
5559 "sha256": "0js9l4rgqbbd95hn872mfz27hag5yg5jp58rbvydxjz4w9x8883b",
5560 "depends": ["Biobase", "Rsolnp"]
5561 },
5562 "SPIA": {
5563 "name": "SPIA",
5564 "version": "2.62.0",
5565 "sha256": "0dl139352p1xl72i7189y40hfk2i6q4nf2s01rwdjgris9sihc2a",
5566 "depends": ["KEGGgraph"]
5567 },
5568 "SPIAT": {
5569 "name": "SPIAT",
5570 "version": "1.12.0",
5571 "sha256": "1y5j6sh5ls10w491sjrb99m80mwh29bdwkg97r3ykyh09wk2w5dq",
5572 "depends": ["RANN", "SpatialExperiment", "SummarizedExperiment", "apcluster", "dbscan", "dittoSeq", "dplyr", "ggplot2", "gridExtra", "gtools", "mmand", "pracma", "raster", "reshape2", "rlang", "sp", "spatstat_explore", "spatstat_geom", "tibble", "vroom"]
5573 },
5574 "SPICEY": {
5575 "name": "SPICEY",
5576 "version": "1.0.0",
5577 "sha256": "1qvwn27dnvyal8kjk5aj619ln4p64jnpi8b73cp4jjad67cibzlw",
5578 "depends": ["AnnotationDbi", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "S4Vectors", "cowplot", "dplyr", "ggplot2", "scales", "tibble", "tidyr"]
5579 },
5580 "SPLINTER": {
5581 "name": "SPLINTER",
5582 "version": "1.36.0",
5583 "sha256": "05iikzwbk7qaw37p1kg18shwk6p84rvhxdnjrvi30bla20abgh2w",
5584 "depends": ["BSgenome_Mmusculus_UCSC_mm9", "Biostrings", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "S4Vectors", "Seqinfo", "biomaRt", "ggplot2", "googleVis", "plyr", "pwalign", "seqLogo", "stringr"]
5585 },
5586 "SPONGE": {
5587 "name": "SPONGE",
5588 "version": "1.32.0",
5589 "sha256": "1xqynqv006jz4kdz5iq9hmpqdrc32zi2lk50gmyw0ckgixapyxp4",
5590 "depends": ["Biobase", "ComplexHeatmap", "MASS", "MetBrewer", "biomaRt", "caret", "cvms", "data_table", "doRNG", "dplyr", "expm", "foreach", "gRbase", "ggplot2", "ggpubr", "ggridges", "glmnet", "igraph", "iterators", "logging", "ppcor", "randomForest", "rlang", "stringr", "tidyr", "tidyverse", "tnet"]
5591 },
5592 "SPOTlight": {
5593 "name": "SPOTlight",
5594 "version": "1.14.0",
5595 "sha256": "1bnwss0rk2psy0l0imlgvvb6vq76f0kjzsr9nc5g9x001k7ic5n8",
5596 "depends": ["Matrix", "Rcpp", "RcppEigen", "SingleCellExperiment", "ggplot2", "sparseMatrixStats"]
5597 },
5598 "SPsimSeq": {
5599 "name": "SPsimSeq",
5600 "version": "1.20.0",
5601 "sha256": "106apmdmd8cclfdfbx8n9mkniwvaz3h7psjryylbsxr1cqbxac1a",
5602 "depends": ["Hmisc", "SingleCellExperiment", "WGCNA", "edgeR", "fitdistrplus", "limma", "mvtnorm", "phyloseq"]
5603 },
5604 "SRAdb": {
5605 "name": "SRAdb",
5606 "version": "1.72.0",
5607 "sha256": "0wkma09cj3x4wwk7847ka2g0gqpch8dg0hqcs63p58wx2wmprfq4",
5608 "depends": ["RCurl", "RSQLite", "R_utils", "graph"]
5609 },
5610 "STADyUM": {
5611 "name": "STADyUM",
5612 "version": "1.0.0",
5613 "sha256": "145qwzg0n88jdlgr0pfvnhmrk92f6hkfl3sq31vi0b3rlmazaw1f",
5614 "depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "MASS", "Rcpp", "S4Vectors", "data_table", "dplyr", "ggplot2", "plyranges", "progress", "purrr", "rlang", "rtracklayer", "tibble", "tidyr"]
5615 },
5616 "STATegRa": {
5617 "name": "STATegRa",
5618 "version": "1.46.0",
5619 "sha256": "010ik7iv37dcasbz75j9150l2vkxcwzkhrvf9r0if8wrg1n26m81",
5620 "depends": ["Biobase", "MASS", "affy", "calibrate", "edgeR", "foreach", "ggplot2", "gplots", "gridExtra", "limma"]
5621 },
5622 "STRINGdb": {
5623 "name": "STRINGdb",
5624 "version": "2.22.0",
5625 "sha256": "1wr0jl0yk1739yyy2j5b9l3kc5rmbxwpky2hmpv4nq0ykz9lbxqx",
5626 "depends": ["RColorBrewer", "gplots", "hash", "httr", "igraph", "plotrix", "plyr", "png", "sqldf"]
5627 },
5628 "SUITOR": {
5629 "name": "SUITOR",
5630 "version": "1.12.0",
5631 "sha256": "161dvlf9jsa1334dbs71ddy6bk4yiwhx47c5yhb6xkswjl6zm0q3",
5632 "depends": ["BiocParallel", "ggplot2"]
5633 },
5634 "SVMDO": {
5635 "name": "SVMDO",
5636 "version": "1.10.0",
5637 "sha256": "0yjsn8ipz9fq6cy8z1f9yxd6zdha6zj4b6db2kms5cjrclggy98y",
5638 "depends": ["AnnotationDbi", "BSDA", "DOSE", "DT", "SummarizedExperiment", "caTools", "caret", "data_table", "dplyr", "e1071", "golem", "klaR", "nortest", "org_Hs_eg_db", "shiny", "shinyFiles", "shinytitle", "sjmisc", "survival"]
5639 },
5640 "SVP": {
5641 "name": "SVP",
5642 "version": "1.2.0",
5643 "sha256": "0735sjwwb00y77f7wai6aw4gqvjvac6s8979ppy3g7av46wmi12l",
5644 "depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "DelayedMatrixStats", "Matrix", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppParallel", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "cli", "deldir", "dplyr", "dqrng", "fastmatch", "ggfun", "ggplot2", "ggstar", "ggtree", "pracma", "rlang", "withr"]
5645 },
5646 "SWATH2stats": {
5647 "name": "SWATH2stats",
5648 "version": "1.40.0",
5649 "sha256": "1ds8ra2jr31hdp2ym65vgqsp79ipgv01q6qrhx4rnsn2jh95gvlq",
5650 "depends": ["biomaRt", "data_table", "ggplot2", "reshape2"]
5651 },
5652 "SamSPECTRAL": {
5653 "name": "SamSPECTRAL",
5654 "version": "1.64.0",
5655 "sha256": "1ncxkzydr5d0xca7jikif6s68m5ah6bnk7qg45cf1svicar4k0j1",
5656 "depends": []
5657 },
5658 "SanityR": {
5659 "name": "SanityR",
5660 "version": "1.0.0",
5661 "sha256": "0a7zayilxgw7fzqqk8b9f3q6r3chagkmy5bxyai0ylsxg49202sw",
5662 "depends": ["BiocGenerics", "BiocParallel", "MatrixGenerics", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "scuttle"]
5663 },
5664 "Scale4C": {
5665 "name": "Scale4C",
5666 "version": "1.32.0",
5667 "sha256": "063h796ywzzp92avhvjhdbmzd7z4a3rm2rvb60sigkbbb1636scj",
5668 "depends": ["GenomicRanges", "IRanges", "SummarizedExperiment", "smoothie"]
5669 },
5670 "ScaledMatrix": {
5671 "name": "ScaledMatrix",
5672 "version": "1.18.0",
5673 "sha256": "1bzbqszkfwwa8jgd5d0yb8jx84g400svfk7b0vrm45n6vng9279g",
5674 "depends": ["DelayedArray", "Matrix", "S4Vectors"]
5675 },
5676 "Sconify": {
5677 "name": "Sconify",
5678 "version": "1.30.0",
5679 "sha256": "1py4q8w8y8f1sr4qrpaknmw52sc8sls5zhm2ycrsdkhfwyswcvvm",
5680 "depends": ["FNN", "Rtsne", "dplyr", "flowCore", "ggplot2", "magrittr", "readr", "tibble"]
5681 },
5682 "SemDist": {
5683 "name": "SemDist",
5684 "version": "1.44.0",
5685 "sha256": "0hlfyfkiizfyh1fy0b5xy19k3253ib0m1fqb542rdayzfk8qhn48",
5686 "depends": ["AnnotationDbi", "GO_db", "annotate"]
5687 },
5688 "SeqArray": {
5689 "name": "SeqArray",
5690 "version": "1.50.0",
5691 "sha256": "0p749sf2smc8j59qs5k3vkxlf5h2zws8q40vrnhv1svl1j1gc17d",
5692 "depends": ["Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "digest", "gdsfmt"]
5693 },
5694 "SeqGSEA": {
5695 "name": "SeqGSEA",
5696 "version": "1.50.0",
5697 "sha256": "02xzwpn95q1dp7a2hd2rhrs7zd8z64d7f6w7ksabxbm3vsmwzrlm",
5698 "depends": ["Biobase", "DESeq2", "biomaRt", "doParallel"]
5699 },
5700 "SeqGate": {
5701 "name": "SeqGate",
5702 "version": "1.20.0",
5703 "sha256": "1yzq4clc9xvh2zfn1g5jmp19sj7l3na78nzzjgpf6q2q64r93igc",
5704 "depends": ["BiocManager", "GenomicRanges", "S4Vectors", "SummarizedExperiment"]
5705 },
5706 "SeqSQC": {
5707 "name": "SeqSQC",
5708 "version": "1.32.0",
5709 "sha256": "0vx3xh0hk3yqv1fyimpwq04kvmzw6hqw8879f6ri3019vszl0apa",
5710 "depends": ["ExperimentHub", "GGally", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "SNPRelate", "e1071", "gdsfmt", "ggplot2", "plotly", "reshape2", "rmarkdown"]
5711 },
5712 "SeqVarTools": {
5713 "name": "SeqVarTools",
5714 "version": "1.48.0",
5715 "sha256": "1ldvppx94wvahislg39hc3b4m45qdzpm8nbg2c77iv9w1b3411z8",
5716 "depends": ["Biobase", "BiocGenerics", "GWASExactHW", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "SeqArray", "data_table", "gdsfmt", "logistf"]
5717 },
5718 "Seqinfo": {
5719 "name": "Seqinfo",
5720 "version": "1.0.0",
5721 "sha256": "10jd4f4qvk4f2z4x9x6663fanh1mb0sxk9xs8giwbw1yb6jrab6p",
5722 "depends": ["BiocGenerics", "IRanges", "S4Vectors"]
5723 },
5724 "SharedObject": {
5725 "name": "SharedObject",
5726 "version": "1.24.0",
5727 "sha256": "0wlhhnvy9hr9z6xsd24pz3y8yw32y4nmv0dn25rfcsai2a2wd7vp",
5728 "depends": ["BH", "BiocGenerics", "Rcpp"]
5729 },
5730 "ShortRead": {
5731 "name": "ShortRead",
5732 "version": "1.68.0",
5733 "sha256": "16vjfqsj5mjzq8sh8px6qkcq6d9r95vnp77cgqxm80gqrqny9bj2",
5734 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "Rhtslib", "Rsamtools", "S4Vectors", "Seqinfo", "XVector", "hwriter", "lattice", "latticeExtra", "pwalign"]
5735 },
5736 "SiPSiC": {
5737 "name": "SiPSiC",
5738 "version": "1.10.0",
5739 "sha256": "1mm1a65vb51fzfziyia8dijlrinhlf8p1mvk0cvjh8pvdd6rjcm3",
5740 "depends": ["Matrix", "SingleCellExperiment"]
5741 },
5742 "SigCheck": {
5743 "name": "SigCheck",
5744 "version": "2.42.0",
5745 "sha256": "01cz1xdb7fmlvky67jj1msmyjphc85qahh29rrai36xckbmy6rka",
5746 "depends": ["Biobase", "BiocParallel", "MLInterfaces", "e1071", "survival"]
5747 },
5748 "SigsPack": {
5749 "name": "SigsPack",
5750 "version": "1.24.0",
5751 "sha256": "0j6lxlrvphhhm05dh1h7b48dqjrshalf81icdb3b0ggdqvymkrxz",
5752 "depends": ["BSgenome", "Biobase", "Biostrings", "GenomeInfoDb", "GenomicRanges", "SummarizedExperiment", "VariantAnnotation", "quadprog", "rtracklayer"]
5753 },
5754 "SimBu": {
5755 "name": "SimBu",
5756 "version": "1.12.0",
5757 "sha256": "1cp4w554pmlq4kgbpaimdgk7gg7qwwfkcihawg1lg2nyb7l00sfj",
5758 "depends": ["BiocParallel", "Matrix", "RColorBrewer", "RCurl", "SummarizedExperiment", "basilisk", "data_table", "dplyr", "ggplot2", "phyloseq", "proxyC", "reticulate", "sparseMatrixStats", "tidyr"]
5759 },
5760 "SimFFPE": {
5761 "name": "SimFFPE",
5762 "version": "1.22.0",
5763 "sha256": "139vs9n9ybps7i2gcs5q5vh18njifaz2xc50nrj30s7pspxyiib5",
5764 "depends": ["Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "doParallel", "dplyr", "foreach", "truncnorm"]
5765 },
5766 "SingleCellAlleleExperiment": {
5767 "name": "SingleCellAlleleExperiment",
5768 "version": "1.6.0",
5769 "sha256": "1il9xdp8vv0sa9cdssv8n34knpiyqbixcmxnf048c576z9pyvzjb",
5770 "depends": ["BiocParallel", "DelayedArray", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment"]
5771 },
5772 "SingleCellExperiment": {
5773 "name": "SingleCellExperiment",
5774 "version": "1.32.0",
5775 "sha256": "0a8p3i9zhgzl6lmms1l4nndjgm8czzjp70gj7q13zh26cb3hiyg3",
5776 "depends": ["BiocGenerics", "DelayedArray", "GenomicRanges", "S4Vectors", "SummarizedExperiment"]
5777 },
5778 "SingleCellSignalR": {
5779 "name": "SingleCellSignalR",
5780 "version": "2.0.0",
5781 "sha256": "0pxpa1af6d6rkc33yxbal9g6lv9r4h2ikkwlvmlm0cznb6n466mc",
5782 "depends": ["BulkSignalR", "foreach", "ggplot2", "matrixStats", "matrixTests"]
5783 },
5784 "SingleMoleculeFootprinting": {
5785 "name": "SingleMoleculeFootprinting",
5786 "version": "2.4.0",
5787 "sha256": "1gxk7msqac2qq0m9p4hr9gvxvz8gilz1cn3g4vca49mslxcjlhpy",
5788 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "Matrix", "QuasR", "RColorBrewer", "S4Vectors", "Seqinfo", "cluster", "dplyr", "ggplot2", "ggpointdensity", "ggrepel", "magrittr", "miscTools", "parallelDist", "patchwork", "plyranges", "qs", "rlang", "stringr", "tibble", "tidyr", "viridis"]
5789 },
5790 "SingleR": {
5791 "name": "SingleR",
5792 "version": "2.12.0",
5793 "sha256": "0f7bfvyff044sf5dbgv3pfprl9qlgi16h737pfb0kq643s8ml45p",
5794 "depends": ["BiocNeighbors", "BiocParallel", "DelayedArray", "DelayedMatrixStats", "Matrix", "Rcpp", "S4Vectors", "SummarizedExperiment", "assorthead", "beachmat"]
5795 },
5796 "Site2Target": {
5797 "name": "Site2Target",
5798 "version": "1.2.0",
5799 "sha256": "06nyf7vg22nhw2qk65ywl2za1850kjh1w7d9s55j7zk91fgfy93d",
5800 "depends": ["BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "MASS", "S4Vectors"]
5801 },
5802 "SmartPhos": {
5803 "name": "SmartPhos",
5804 "version": "1.0.0",
5805 "sha256": "15ixzx0ps69wnyz51d492lyxca5rklrp82l8g0wf7k72h3jah8kj",
5806 "depends": ["Biobase", "BiocParallel", "DT", "MsCoreUtils", "MultiAssayExperiment", "SummarizedExperiment", "XML", "cowplot", "data_table", "decoupleR", "doParallel", "doRNG", "dplyr", "e1071", "factoextra", "ggbeeswarm", "ggplot2", "imputeLCMD", "limma", "magrittr", "matrixStats", "missForest", "pheatmap", "piano", "plotly", "proDA", "rlang", "shiny", "shinyBS", "shinyWidgets", "shinyjs", "shinythemes", "stringr", "tibble", "tidyr", "vsn"]
5807 },
5808 "SomaticSignatures": {
5809 "name": "SomaticSignatures",
5810 "version": "2.46.0",
5811 "sha256": "1y6fcipzwnik016r6zllyi8ki9nqaz8hbx68rya5wdg16x3vngfp",
5812 "depends": ["Biobase", "Biostrings", "GenomicRanges", "IRanges", "NMF", "S4Vectors", "Seqinfo", "VariantAnnotation", "ggbio", "ggplot2", "pcaMethods", "proxy", "reshape2"]
5813 },
5814 "SpaNorm": {
5815 "name": "SpaNorm",
5816 "version": "1.4.0",
5817 "sha256": "0g4899p805scvgjqar5fyqrxc0ysah83gi6waaz482hdlcdxkyp7",
5818 "depends": ["Matrix", "S4Vectors", "SeuratObject", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "edgeR", "ggplot2", "matrixStats", "rlang", "scran"]
5819 },
5820 "SpaceMarkers": {
5821 "name": "SpaceMarkers",
5822 "version": "2.0.0",
5823 "sha256": "0xq2scbk6xb87r7zl93f62rl90f9wvypn9mda2c88qkzlv76m20i",
5824 "depends": ["Matrix", "RColorBrewer", "ape", "circlize", "dplyr", "effsize", "ggplot2", "hdf5r", "jsonlite", "matrixStats", "matrixTests", "mixtools", "nanoparquet", "qvalue", "readbitmap", "reshape2", "rlang", "rstatix", "spatstat_explore", "spatstat_geom", "viridis"]
5825 },
5826 "SpaceTrooper": {
5827 "name": "SpaceTrooper",
5828 "version": "1.0.0",
5829 "sha256": "1xi8vzy975j6m7vgh9hxc5ifl6sj5m39fnaj4l8hxxqwxac7gkl5",
5830 "depends": ["DropletUtils", "S4Vectors", "SpatialExperiment", "SpatialExperimentIO", "SummarizedExperiment", "arrow", "cowplot", "data_table", "dplyr", "e1071", "ggplot2", "ggpubr", "glmnet", "rhdf5", "rlang", "robustbase", "scater", "scuttle", "sf", "sfheaders"]
5831 },
5832 "Spaniel": {
5833 "name": "Spaniel",
5834 "version": "1.24.0",
5835 "sha256": "0vrhfmfgqs3am9d1c9mnl1nprpg25pgv5g54whpf11zd16vy9p0c",
5836 "depends": ["DropletUtils", "S4Vectors", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "igraph", "jpeg", "jsonlite", "magrittr", "png", "scater", "scran", "shiny"]
5837 },
5838 "SparseArray": {
5839 "name": "SparseArray",
5840 "version": "1.10.0",
5841 "sha256": "1pywjz9pgy30iph6nq7nwdpqm6q980hxrb9qhz9c4ba9kgwk4pb6",
5842 "depends": ["BiocGenerics", "IRanges", "Matrix", "MatrixGenerics", "S4Arrays", "S4Vectors", "XVector", "matrixStats"]
5843 },
5844 "SparseSignatures": {
5845 "name": "SparseSignatures",
5846 "version": "2.20.0",
5847 "sha256": "1vy8gj0walh890rxj0hi84331i7gzkvk5dhafdg5mk7czmx4r80l",
5848 "depends": ["BSgenome", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "NMF", "RhpcBLASctl", "data_table", "ggplot2", "gridExtra", "nnlasso", "nnls", "reshape2"]
5849 },
5850 "SpatialCPie": {
5851 "name": "SpatialCPie",
5852 "version": "1.26.0",
5853 "sha256": "08lyfgvdm585c2xc0k5mlfpmf2zndrvjs6im277zf7nl5rcg2mly",
5854 "depends": ["SummarizedExperiment", "colorspace", "data_table", "digest", "dplyr", "ggforce", "ggiraph", "ggplot2", "ggrepel", "igraph", "lpSolve", "purrr", "readr", "rlang", "shiny", "shinyWidgets", "shinycssloaders", "shinyjs", "tibble", "tidyr", "tidyselect", "zeallot"]
5855 },
5856 "SpatialDecon": {
5857 "name": "SpatialDecon",
5858 "version": "1.20.0",
5859 "sha256": "0y5wn3vi5a50c3745qxspxq89xj4j3bb0f2sj193j5qnyycli4px",
5860 "depends": ["Biobase", "GeomxTools", "Matrix", "SeuratObject", "logNormReg", "repmis"]
5861 },
5862 "SpatialExperiment": {
5863 "name": "SpatialExperiment",
5864 "version": "1.20.0",
5865 "sha256": "1gnascjas2gz4h40gh9s1vf33cy6r85zq6l7lc8a2d9ifyp0pm0c",
5866 "depends": ["BiocFileCache", "BiocGenerics", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "magick", "rjson"]
5867 },
5868 "SpatialExperimentIO": {
5869 "name": "SpatialExperimentIO",
5870 "version": "1.2.0",
5871 "sha256": "1gffisk37lr1awxymjwa6k0wcsd6clfpnkswrgsr2z5j2ifw04ky",
5872 "depends": ["DropletUtils", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "arrow", "data_table", "purrr"]
5873 },
5874 "SpatialFeatureExperiment": {
5875 "name": "SpatialFeatureExperiment",
5876 "version": "1.11.1",
5877 "sha256": "0ps7fnjykpk630f6sffdavidg76rnjdwmcs759lvq0c17b3gscsr",
5878 "depends": ["Biobase", "BiocGenerics", "BiocNeighbors", "BiocParallel", "DropletUtils", "EBImage", "Matrix", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "data_table", "lifecycle", "rjson", "rlang", "sf", "sfheaders", "spatialreg", "spdep", "terra", "zeallot"]
5879 },
5880 "SpatialOmicsOverlay": {
5881 "name": "SpatialOmicsOverlay",
5882 "version": "1.10.0",
5883 "sha256": "0bqgyfq67d87zdrplgqjzk9dj33ha3g6hzhar7g031wqxgas38r2",
5884 "depends": ["Biobase", "BiocFileCache", "EBImage", "GeomxTools", "RBioFormats", "S4Vectors", "XML", "base64enc", "data_table", "dplyr", "ggplot2", "ggtext", "magick", "pbapply", "plotrix", "readxl", "scattermore", "stringr"]
5885 },
5886 "SpeCond": {
5887 "name": "SpeCond",
5888 "version": "1.64.0",
5889 "sha256": "088lwcy7qgbsr311r31fqyhvx13y7x2kr416z6c7kylh1l3qlbfb",
5890 "depends": ["Biobase", "RColorBrewer", "fields", "hwriter", "mclust"]
5891 },
5892 "Spectra": {
5893 "name": "Spectra",
5894 "version": "1.20.0",
5895 "sha256": "0ajaxgsvg6aav2l74zmar76pwbjnrzd5sv8xv20v3jdcnwq33ghw",
5896 "depends": ["BiocGenerics", "BiocParallel", "IRanges", "MetaboCoreUtils", "MsCoreUtils", "ProtGenerics", "S4Vectors", "fs"]
5897 },
5898 "SpectraQL": {
5899 "name": "SpectraQL",
5900 "version": "1.4.0",
5901 "sha256": "1md9sdqh9f5wca54a47nfj7lhcv6gf0z0g5xhfchqrzb88ldr5g1",
5902 "depends": ["MsCoreUtils", "ProtGenerics", "Spectra"]
5903 },
5904 "SpectralTAD": {
5905 "name": "SpectralTAD",
5906 "version": "1.26.0",
5907 "sha256": "0l07d7hyamcjias3gcgb0gkgbrf8ha7d7lmzp3k121vydsg1drqa",
5908 "depends": ["BiocParallel", "GenomicRanges", "HiCcompare", "Matrix", "PRIMME", "cluster", "dplyr", "magrittr"]
5909 },
5910 "SpectriPy": {
5911 "name": "SpectriPy",
5912 "version": "1.0.0",
5913 "sha256": "0k96x0nijgw01d0x0irbnj1ia0i046zbndf4j7fhk4fqpc79qakl",
5914 "depends": ["IRanges", "MsCoreUtils", "ProtGenerics", "S4Vectors", "Spectra", "reticulate"]
5915 },
5916 "SpliceWiz": {
5917 "name": "SpliceWiz",
5918 "version": "1.12.0",
5919 "sha256": "02g7h7yaqkallwalx57w9hli02xzar2bcvqv06sx63jpfaar34xv",
5920 "depends": ["AnnotationHub", "BSgenome", "BiocFileCache", "BiocGenerics", "BiocParallel", "Biostrings", "DT", "DelayedArray", "DelayedMatrixStats", "GenomeInfoDb", "GenomicRanges", "HDF5Array", "IRanges", "NxtIRFdata", "RColorBrewer", "RSQLite", "R_utils", "Rcpp", "RcppProgress", "S4Vectors", "SummarizedExperiment", "data_table", "fst", "genefilter", "ggplot2", "h5mread", "heatmaply", "htmltools", "httr", "magrittr", "matrixStats", "ompBAM", "patchwork", "pheatmap", "plotly", "progress", "rhandsontable", "rhdf5", "rtracklayer", "rvest", "scales", "shiny", "shinyFiles", "shinyWidgets", "shinydashboard", "stringi"]
5921 },
5922 "SplicingFactory": {
5923 "name": "SplicingFactory",
5924 "version": "1.18.0",
5925 "sha256": "12iswmi8mzz3kbbjr2lf02p35gvbzds588i59msyw4803vravdlh",
5926 "depends": ["SummarizedExperiment"]
5927 },
5928 "SplicingGraphs": {
5929 "name": "SplicingGraphs",
5930 "version": "1.49.1",
5931 "sha256": "1bi722gg24lv2rljps4gpkaqa560z39q76wzqf03zp08616fgfkm",
5932 "depends": ["BiocGenerics", "BiocParallel", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rgraphviz", "Rsamtools", "S4Vectors", "Seqinfo", "graph", "igraph"]
5933 },
5934 "SplineDV": {
5935 "name": "SplineDV",
5936 "version": "1.2.0",
5937 "sha256": "0nf35ljh2hrh05x3a5fj273ibd7knm390li6na5maq763vyvx4zb",
5938 "depends": ["Biobase", "BiocGenerics", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "plotly", "scuttle", "sparseMatrixStats"]
5939 },
5940 "SpotClean": {
5941 "name": "SpotClean",
5942 "version": "1.12.0",
5943 "sha256": "0y4cbv5hcz9q4wcgx4hr66998bpzxlsdlgski2wca6ag604ryxjy",
5944 "depends": ["Matrix", "RColorBrewer", "S4Vectors", "Seurat", "SpatialExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "readbitmap", "rhdf5", "rjson", "rlang", "tibble", "viridis"]
5945 },
5946 "SpotSweeper": {
5947 "name": "SpotSweeper",
5948 "version": "1.6.0",
5949 "sha256": "16f6dqafv7lps5k5lnjzd612fcgkhlpl13l89p5036qxmfhwxvmi",
5950 "depends": ["BiocNeighbors", "BiocParallel", "MASS", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "escheR", "ggplot2", "spatialEco"]
5951 },
5952 "StabMap": {
5953 "name": "StabMap",
5954 "version": "1.4.0",
5955 "sha256": "0pqk8i63w1x3ksjfygyf819gr93yb3jl5kpdvwz04r16n3n3sxaq",
5956 "depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "BiocSingular", "MASS", "Matrix", "MatrixGenerics", "SummarizedExperiment", "abind", "igraph", "slam"]
5957 },
5958 "Statial": {
5959 "name": "Statial",
5960 "version": "1.12.0",
5961 "sha256": "10apydvjfj7jlg5ns55rfy4zsy99lzwzc7bxjn8h3aygs9nwnv60",
5962 "depends": ["BiocParallel", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "cluster", "concaveman", "data_table", "dplyr", "edgeR", "ggplot2", "limma", "magrittr", "plotly", "purrr", "ranger", "spatstat_explore", "spatstat_geom", "stringr", "tibble", "tidyr", "tidyselect", "treekoR"]
5963 },
5964 "Streamer": {
5965 "name": "Streamer",
5966 "version": "1.56.0",
5967 "sha256": "0sg7as0b12d0lwh2wavvb036v55dzf8y8xixa6q75hrs2zw0x47w",
5968 "depends": ["BiocGenerics", "RBGL", "graph"]
5969 },
5970 "Structstrings": {
5971 "name": "Structstrings",
5972 "version": "1.26.0",
5973 "sha256": "0lmymq8lgaiw8v8l1fln728yb4iky6ypslw7hn5lg48w9fjhgiqv",
5974 "depends": ["BiocGenerics", "Biostrings", "IRanges", "S4Vectors", "XVector", "crayon", "stringi", "stringr"]
5975 },
5976 "StructuralVariantAnnotation": {
5977 "name": "StructuralVariantAnnotation",
5978 "version": "1.26.0",
5979 "sha256": "0lqk2fwpz3nkz5ww4lcz6751hjkcmc2wgdxk07fb56qkzbpyg5f8",
5980 "depends": ["BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "VariantAnnotation", "assertthat", "dplyr", "pwalign", "rlang", "rtracklayer", "stringr"]
5981 },
5982 "SubCellBarCode": {
5983 "name": "SubCellBarCode",
5984 "version": "1.26.0",
5985 "sha256": "1c20fnjzqfsbj2ay6cm0401yv4v0a7s61cvzl1y95drh5r6g0y5h",
5986 "depends": ["AnnotationDbi", "Rtsne", "caret", "e1071", "ggplot2", "ggrepel", "gridExtra", "networkD3", "org_Hs_eg_db", "scatterplot3d"]
5987 },
5988 "SummarizedExperiment": {
5989 "name": "SummarizedExperiment",
5990 "version": "1.40.0",
5991 "sha256": "1xmlfrdhzlbsd23warfdm5iscm61r29jxridv8krv16b95l4axk9",
5992 "depends": ["Biobase", "BiocGenerics", "DelayedArray", "GenomicRanges", "IRanges", "Matrix", "MatrixGenerics", "S4Arrays", "S4Vectors", "Seqinfo"]
5993 },
5994 "Summix": {
5995 "name": "Summix",
5996 "version": "2.16.0",
5997 "sha256": "1sy7gi33zzd1wv5ql16r6qjmqlhxgkdkbbvjzkxdxpr0dq8k18l6",
5998 "depends": ["BEDASSLE", "dplyr", "magrittr", "nloptr", "randomcoloR", "scales", "tibble", "tidyselect", "visNetwork"]
5999 },
6000 "SuperCellCyto": {
6001 "name": "SuperCellCyto",
6002 "version": "1.0.0",
6003 "sha256": "0l4ajfp4gjfkpry31aiwsy1x8wwg87aq5zj52szhn982xfrzjya1",
6004 "depends": ["BiocParallel", "Matrix", "SuperCell", "data_table"]
6005 },
6006 "SurfR": {
6007 "name": "SurfR",
6008 "version": "1.6.0",
6009 "sha256": "19kzdq6h56wmc1fryb7zhsa14d9cyqlhf5pgk653jz69iy0z72m1",
6010 "depends": ["BiocFileCache", "DESeq2", "SPsimSeq", "SummarizedExperiment", "TCGAbiolinks", "assertr", "biomaRt", "curl", "dplyr", "edgeR", "ggplot2", "ggrepel", "gridExtra", "httr", "knitr", "magrittr", "metaRNASeq", "openxlsx", "rhdf5", "rjson", "scales", "stringr", "tidyr", "venn"]
6011 },
6012 "SwathXtend": {
6013 "name": "SwathXtend",
6014 "version": "2.32.0",
6015 "sha256": "1149rnh1h71afza6a0xjjgjgn10afdsc6vsqsvj7n6pb8lannzxy",
6016 "depends": ["VennDiagram", "e1071", "lattice", "openxlsx"]
6017 },
6018 "SynExtend": {
6019 "name": "SynExtend",
6020 "version": "1.22.0",
6021 "sha256": "14j98vhbm3hh2d995za5mkjrr37gwfvrigwyj1ybg9bvvqfkf6mq",
6022 "depends": ["Biostrings", "DBI", "DECIPHER", "IRanges", "RSQLite", "S4Vectors"]
6023 },
6024 "SynMut": {
6025 "name": "SynMut",
6026 "version": "1.26.0",
6027 "sha256": "0zi4zlnnayb026rfra2d5lw5l1slp70s6lblvwsj3gszivgcvc7b",
6028 "depends": ["BiocGenerics", "Biostrings", "seqinr", "stringr"]
6029 },
6030 "TADCompare": {
6031 "name": "TADCompare",
6032 "version": "1.20.0",
6033 "sha256": "0gwcc4rld9jm7wrq2dfg9fa1qvfb6v48ldcinfjzkjf2whj3kcn9",
6034 "depends": ["HiCcompare", "Matrix", "PRIMME", "RColorBrewer", "cluster", "cowplot", "dplyr", "ggplot2", "ggpubr", "magrittr", "reshape2", "tidyr"]
6035 },
6036 "TAPseq": {
6037 "name": "TAPseq",
6038 "version": "1.22.0",
6039 "sha256": "0djj1sz0ml831rgv974277i65lrghv1a2xc8jjjd0cs5xzci97ri",
6040 "depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "dplyr", "tidyr"]
6041 },
6042 "TBSignatureProfiler": {
6043 "name": "TBSignatureProfiler",
6044 "version": "1.22.0",
6045 "sha256": "0ilp68m46qdh45rzksmbvnykvbwbpw75gww66n0glga4pkp551xk",
6046 "depends": ["ASSIGN", "BiocParallel", "ComplexHeatmap", "DESeq2", "DT", "GSVA", "HGNChelper", "RColorBrewer", "ROCit", "S4Vectors", "SummarizedExperiment", "edgeR", "gdata", "ggplot2", "glmnet", "magrittr", "pROC", "reshape2", "singscore", "tibble"]
6047 },
6048 "TCC": {
6049 "name": "TCC",
6050 "version": "1.50.0",
6051 "sha256": "14hbv28nrg81n905c5g0gmrl3qycwqn6mi2cbvc4cnhymzvcw20f",
6052 "depends": ["DESeq2", "ROC", "edgeR"]
6053 },
6054 "TCGAbiolinks": {
6055 "name": "TCGAbiolinks",
6056 "version": "2.38.0",
6057 "sha256": "1ysxy8jc06szqysw54j8hznc2vy0w3m1cr822cy6g4pfbdsqflp9",
6058 "depends": ["GenomicRanges", "IRanges", "R_utils", "S4Vectors", "SummarizedExperiment", "TCGAbiolinksGUI_data", "XML", "biomaRt", "data_table", "downloader", "dplyr", "ggplot2", "httr", "jsonlite", "knitr", "plyr", "purrr", "readr", "rvest", "stringr", "tibble", "tidyr", "xml2"]
6059 },
6060 "TCGAutils": {
6061 "name": "TCGAutils",
6062 "version": "1.29.5",
6063 "sha256": "051ylfrkbf0dx2m47hqbm4d0sw47nwmlhzwzalyx4j484jn4kra2",
6064 "depends": ["AnnotationDbi", "BiocBaseUtils", "BiocGenerics", "GenomeInfoDb", "GenomicDataCommons", "GenomicFeatures", "GenomicRanges", "IRanges", "MultiAssayExperiment", "RaggedExperiment", "S4Vectors", "Seqinfo", "SummarizedExperiment", "rvest", "stringr", "xml2"]
6065 },
6066 "TCseq": {
6067 "name": "TCseq",
6068 "version": "1.34.0",
6069 "sha256": "156k83g75i2ndi7gc0li2zngad4s9bqn4ygi9lj5mlnf2lhr0rlq",
6070 "depends": ["BiocGenerics", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "SummarizedExperiment", "cluster", "e1071", "edgeR", "ggplot2", "locfit", "reshape2"]
6071 },
6072 "TDbasedUFE": {
6073 "name": "TDbasedUFE",
6074 "version": "1.10.0",
6075 "sha256": "1d130jjazb21x93cw000z22hs9iic5l47sw7z38jv42pq7xv4xfa",
6076 "depends": ["GenomicRanges", "MOFAdata", "rTensor", "readr", "shiny", "tximport", "tximportData"]
6077 },
6078 "TDbasedUFEadv": {
6079 "name": "TDbasedUFEadv",
6080 "version": "1.10.0",
6081 "sha256": "0wqi3rdiyhl7sxccwqcmnyzl5yfd3c4f4nliksbmja7xm5frm4hq",
6082 "depends": ["Biobase", "DOSE", "GenomicRanges", "RTCGA", "STRINGdb", "TDbasedUFE", "enrichR", "enrichplot", "hash", "rTensor", "shiny"]
6083 },
6084 "TEKRABber": {
6085 "name": "TEKRABber",
6086 "version": "1.14.0",
6087 "sha256": "13cqkkqhcwx9gygkkqjgjb3iph8q38nwx637dadk69gbqbslkm0g",
6088 "depends": ["DESeq2", "Rcpp", "SCBN", "Seqinfo", "apeglm", "biomaRt", "doParallel", "dplyr", "foreach", "magrittr", "rtracklayer"]
6089 },
6090 "TENET": {
6091 "name": "TENET",
6092 "version": "1.2.0",
6093 "sha256": "1s5cb3lyy22p69x2vkd1igbn7limhkfchfk3dwg3fvkbxk299xdv",
6094 "depends": ["AnnotationHub", "BAMMtools", "BSgenome_Hsapiens_UCSC_hg38", "Biostrings", "ExperimentHub", "GenomicRanges", "IRanges", "MotifDb", "MultiAssayExperiment", "RCircos", "R_utils", "S4Vectors", "SummarizedExperiment", "TCGAbiolinks", "TENET_ExperimentHub", "ggplot2", "matlab", "pastecs", "rtracklayer", "seqLogo", "sesame", "sesameData", "survival", "survminer"]
6095 },
6096 "TENxIO": {
6097 "name": "TENxIO",
6098 "version": "1.12.0",
6099 "sha256": "1vwp8cqvlz0d4bid7wwv3xrn2mg4920sraz41m55b1riawqdnxdp",
6100 "depends": ["BiocBaseUtils", "BiocGenerics", "BiocIO", "GenomicRanges", "HDF5Array", "Matrix", "MatrixGenerics", "RCurl", "R_utils", "S4Vectors", "Seqinfo", "SingleCellExperiment", "SummarizedExperiment", "readr", "rhdf5"]
6101 },
6102 "TEQC": {
6103 "name": "TEQC",
6104 "version": "4.32.0",
6105 "sha256": "1kh9h2lw0lg9qafxqv78wm5j5jc138zqr9raizpa7czvwg7ppc7b",
6106 "depends": ["Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "hwriter"]
6107 },
6108 "TFARM": {
6109 "name": "TFARM",
6110 "version": "1.32.0",
6111 "sha256": "16izz3krw786k3ryf1zs6lhi9kdx0w1cwfcawcp0rzwwwhn8x7nm",
6112 "depends": ["GenomicRanges", "arules", "fields", "gplots", "stringr"]
6113 },
6114 "TFBSTools": {
6115 "name": "TFBSTools",
6116 "version": "1.48.0",
6117 "sha256": "0vsl5i3nv57ha47qa5ba3sd99n9sd6px402wqr80fv9636qb85nq",
6118 "depends": ["BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DBI", "DirichletMultinomial", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "Seqinfo", "TFMPvalue", "XML", "XVector", "caTools", "gtools", "pwalign", "rtracklayer", "seqLogo"]
6119 },
6120 "TFEA_ChIP": {
6121 "name": "TFEA.ChIP",
6122 "version": "1.30.0",
6123 "sha256": "0cyd9qghhvan8gb8dgdcsglmi2c73axd50sd3g9bjzj7rxwpks36",
6124 "depends": ["ExperimentHub", "GenomicFeatures", "GenomicRanges", "IRanges", "R_utils", "biomaRt", "dplyr", "org_Hs_eg_db", "org_Mm_eg_db", "rlang"]
6125 },
6126 "TFHAZ": {
6127 "name": "TFHAZ",
6128 "version": "1.32.0",
6129 "sha256": "0fp26qlcq6yasj4m7zc05lvj2x45waj0w0862976m756z55ximzb",
6130 "depends": ["GenomicRanges", "IRanges", "ORFik", "S4Vectors"]
6131 },
6132 "TFutils": {
6133 "name": "TFutils",
6134 "version": "1.30.0",
6135 "sha256": "14ks561m1n3jq96x51x3127nr5gjndvkcjvk1xrp2ccifdniwl29",
6136 "depends": ["AnnotationDbi", "BiocFileCache", "DT", "GSEABase", "GenomicFiles", "Rsamtools", "SummarizedExperiment", "dplyr", "httr", "magrittr", "miniUI", "org_Hs_eg_db", "readxl", "rjson", "shiny"]
6137 },
6138 "TIN": {
6139 "name": "TIN",
6140 "version": "1.42.0",
6141 "sha256": "1zzglfmipsabf3zbphv0dcjgzb2lwyksg728nvc8k2s2q2y6cbyk",
6142 "depends": ["WGCNA", "aroma_affymetrix", "data_table", "impute", "squash", "stringr"]
6143 },
6144 "TMSig": {
6145 "name": "TMSig",
6146 "version": "1.4.0",
6147 "sha256": "01hzm0b7qyyr666yhk6lb2yv130pjs0ar5ss7jphqshr16h6m0mc",
6148 "depends": ["ComplexHeatmap", "GSEABase", "Matrix", "circlize", "data_table", "limma"]
6149 },
6150 "TMixClust": {
6151 "name": "TMixClust",
6152 "version": "1.32.0",
6153 "sha256": "0ards0ri8g82ianzdidm6bdh64j4jljag8lw9dyilh9d5kqabciz",
6154 "depends": ["Biobase", "BiocParallel", "SPEM", "cluster", "flexclust", "gss", "mvtnorm", "zoo"]
6155 },
6156 "TOAST": {
6157 "name": "TOAST",
6158 "version": "1.24.0",
6159 "sha256": "1cmi1avi7ypy20r0vqyid72zfsas8ch4b2li6s9h9acbi98flzz9",
6160 "depends": ["EpiDISH", "GGally", "SummarizedExperiment", "corpcor", "doParallel", "ggplot2", "limma", "nnls", "quadprog", "tidyr"]
6161 },
6162 "TOP": {
6163 "name": "TOP",
6164 "version": "1.10.0",
6165 "sha256": "152yyajddx7sxigky8s4pymsfrmabiiib4rfvpm3n8pb0mp5if2x",
6166 "depends": ["ClassifyR", "Hmisc", "assertthat", "caret", "directPA", "doParallel", "dplyr", "ggnewscale", "ggplot2", "ggraph", "ggrepel", "ggthemes", "glmnet", "igraph", "latex2exp", "limma", "magrittr", "pROC", "plotly", "purrr", "reshape2", "statmod", "stringr", "survival", "tibble", "tidygraph", "tidyr"]
6167 },
6168 "TPP": {
6169 "name": "TPP",
6170 "version": "3.38.0",
6171 "sha256": "043y7vjr2g62vqky6k7zr262vza5lswrapx0hx2jq9sh4xibizh9",
6172 "depends": ["Biobase", "MASS", "RColorBrewer", "RCurl", "VGAM", "VennDiagram", "biobroom", "broom", "data_table", "doParallel", "dplyr", "foreach", "futile_logger", "ggplot2", "gridExtra", "knitr", "limma", "magrittr", "mefa", "nls2", "openxlsx", "plyr", "purrr", "reshape2", "rmarkdown", "stringr", "tibble", "tidyr"]
6173 },
6174 "TPP2D": {
6175 "name": "TPP2D",
6176 "version": "1.26.0",
6177 "sha256": "117avbbvnvnji5nlk8figs4j2ih9ylfy0k1ryvqv4b9gjg6hqhbn",
6178 "depends": ["BiocParallel", "MASS", "RCurl", "doParallel", "dplyr", "foreach", "ggplot2", "limma", "openxlsx", "stringr", "tidyr"]
6179 },
6180 "TREG": {
6181 "name": "TREG",
6182 "version": "1.14.0",
6183 "sha256": "1c460crq072651h5156qb1wqraljnwhwm8bjy7d4gv8i57dbl6vx",
6184 "depends": ["Matrix", "SummarizedExperiment", "purrr", "rafalib"]
6185 },
6186 "TRESS": {
6187 "name": "TRESS",
6188 "version": "1.16.0",
6189 "sha256": "0xn1lgjb44vxfcwimq06dvj997ianr60nydfawl3pjjxpa7yfmi9",
6190 "depends": ["AnnotationDbi", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "Rsamtools", "S4Vectors", "matrixStats", "rtracklayer"]
6191 },
6192 "TRONCO": {
6193 "name": "TRONCO",
6194 "version": "2.42.0",
6195 "sha256": "0fwvyazzbfjjdivpgml5jjb9r0k07kapkrl4jif1m4mfz24icc9i",
6196 "depends": ["RColorBrewer", "R_matlab", "Rgraphviz", "bnlearn", "circlize", "doParallel", "foreach", "gridExtra", "gtable", "gtools", "igraph", "iterators", "scales", "xtable"]
6197 },
6198 "TSAR": {
6199 "name": "TSAR",
6200 "version": "1.8.0",
6201 "sha256": "1bbrqx70hzjxcfr0pgvqxc6yas51qkqzarmncgpqc7b0cpwiv50i",
6202 "depends": ["dplyr", "ggplot2", "ggpubr", "jsonlite", "magrittr", "mgcv", "minpack_lm", "openxlsx", "plotly", "readxl", "rhandsontable", "shiny", "shinyWidgets", "shinyjs", "stringr", "tidyr"]
6203 },
6204 "TSCAN": {
6205 "name": "TSCAN",
6206 "version": "1.48.0",
6207 "sha256": "14r33cyiy80pksbiwx7hnmxlhimvxhzw2vnvilx4hk90qypda9xk",
6208 "depends": ["DelayedArray", "Matrix", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "TrajectoryUtils", "combinat", "fastICA", "ggplot2", "gplots", "igraph", "mclust", "mgcv", "plyr", "shiny"]
6209 },
6210 "TTMap": {
6211 "name": "TTMap",
6212 "version": "1.32.0",
6213 "sha256": "0pz3h6ybckmfk6y7ajr1sk6yhybqxyhpmh65glfrvhf4rc1cpysc",
6214 "depends": ["Biobase", "SummarizedExperiment", "colorRamps", "rgl"]
6215 },
6216 "TVTB": {
6217 "name": "TVTB",
6218 "version": "1.36.0",
6219 "sha256": "0v4mrcrdlncbi52mxl3pxa8w4p1v4ws6zmfin56c9kcsfrngwp6s",
6220 "depends": ["AnnotationFilter", "BiocGenerics", "BiocParallel", "Biostrings", "GGally", "GenomicRanges", "Gviz", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "ensembldb", "ggplot2", "limma", "reshape2"]
6221 },
6222 "TargetDecoy": {
6223 "name": "TargetDecoy",
6224 "version": "1.16.0",
6225 "sha256": "0dcwnffgp6kmw62jfcnbw3shbb6gmsm4982yrmgrbwc0wddb6jgi",
6226 "depends": ["ggplot2", "ggpubr", "miniUI", "mzID", "mzR", "shiny"]
6227 },
6228 "TargetScore": {
6229 "name": "TargetScore",
6230 "version": "1.48.0",
6231 "sha256": "0yrq8gmd62apl06m4ag3jdy0km8k0np2ijhda16xfk0y4kf4pdim",
6232 "depends": ["Matrix", "pracma"]
6233 },
6234 "TargetSearch": {
6235 "name": "TargetSearch",
6236 "version": "2.12.0",
6237 "sha256": "0cshl6mdqwkndzh2295rf5msg4niysfy2d82xg5c3842vbjlp40r",
6238 "depends": ["assertthat", "ncdf4"]
6239 },
6240 "TaxSEA": {
6241 "name": "TaxSEA",
6242 "version": "1.2.0",
6243 "sha256": "18dfz7pijpral6mzhx3vjm1gyf0d653jq9iypbs6z7p8g342wyyw",
6244 "depends": []
6245 },
6246 "TileDBArray": {
6247 "name": "TileDBArray",
6248 "version": "1.20.0",
6249 "sha256": "0czy2xn55zld91zqpj16cd3nnys1v0bh61kw408njslxgwslsnrz",
6250 "depends": ["DelayedArray", "S4Vectors", "SparseArray", "tiledb"]
6251 },
6252 "TissueEnrich": {
6253 "name": "TissueEnrich",
6254 "version": "1.30.0",
6255 "sha256": "0ysk3wx7c73ljgz78ywkriirxlbpnwg1n3rv24qi24rh9n9j2n5f",
6256 "depends": ["GSEABase", "SummarizedExperiment", "dplyr", "ggplot2", "tidyr"]
6257 },
6258 "TnT": {
6259 "name": "TnT",
6260 "version": "1.32.0",
6261 "sha256": "0f3q1g6zqcpxl5f1icj8frdlpmxwnf2lgrab7z1n6bssdvvjv5r2",
6262 "depends": ["Biobase", "GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "data_table", "htmlwidgets", "jsonlite", "knitr"]
6263 },
6264 "ToxicoGx": {
6265 "name": "ToxicoGx",
6266 "version": "2.14.0",
6267 "sha256": "01y338mxf3sx3rkmzd5dnlk04x3nwbk15vnigjyhaq2h18gc5qqy",
6268 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "CoreGx", "S4Vectors", "SummarizedExperiment", "assertthat", "caTools", "data_table", "downloader", "dplyr", "ggplot2", "jsonlite", "limma", "magrittr", "reshape2", "scales", "tibble", "tidyr"]
6269 },
6270 "TrIdent": {
6271 "name": "TrIdent",
6272 "version": "1.2.0",
6273 "sha256": "0ap55nnljg1q4d4vg1rz9k9d0fy5dx71ha26haw98kbb04jxbbps",
6274 "depends": ["dplyr", "ggplot2", "patchwork", "roll", "stringr", "tidyr"]
6275 },
6276 "TrajectoryGeometry": {
6277 "name": "TrajectoryGeometry",
6278 "version": "1.18.0",
6279 "sha256": "12s9lq46admw4akfxpcgxkq6l46z02k00lx6q7h386p4lbr9f32k",
6280 "depends": ["ggplot2", "pracma", "rgl"]
6281 },
6282 "TrajectoryUtils": {
6283 "name": "TrajectoryUtils",
6284 "version": "1.18.0",
6285 "sha256": "0y2d2pxsiagzzqplbwz6qmkcd3rqq77j6zsj8i987dwk13p5gy4f",
6286 "depends": ["Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "igraph"]
6287 },
6288 "TreeAndLeaf": {
6289 "name": "TreeAndLeaf",
6290 "version": "1.22.0",
6291 "sha256": "0ql61a8a3wl1fp9wkliqk7794jhvgx062i1awy1k3aipwl9lwyay",
6292 "depends": ["RedeR", "ape", "igraph"]
6293 },
6294 "TreeSummarizedExperiment": {
6295 "name": "TreeSummarizedExperiment",
6296 "version": "2.18.0",
6297 "sha256": "15kqkj3hz24mbiz9bs63frfl983f4vv1byki32g4fljhwd6xv0m9",
6298 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "IRanges", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "ape", "dplyr", "rlang", "treeio"]
6299 },
6300 "Trendy": {
6301 "name": "Trendy",
6302 "version": "1.32.0",
6303 "sha256": "0cyxb4xdfr52vynwjwysrnxd8xn386iy72yzg81d20v27yykd4yv",
6304 "depends": ["BiocParallel", "DT", "S4Vectors", "SummarizedExperiment", "gplots", "magrittr", "segmented", "shiny", "shinyFiles"]
6305 },
6306 "TurboNorm": {
6307 "name": "TurboNorm",
6308 "version": "1.58.0",
6309 "sha256": "068g9q3111bshis8f0f236jhbpyy5nm1h203ibfllkq1pvw4l6cr",
6310 "depends": ["affy", "convert", "lattice", "limma", "marray"]
6311 },
6312 "UCSC_utils": {
6313 "name": "UCSC.utils",
6314 "version": "1.6.0",
6315 "sha256": "0ylb4d3bsl859609b4wsclhhv2zrvhkcr25q5mv6ywyvppri3j1y",
6316 "depends": ["S4Vectors", "httr", "jsonlite"]
6317 },
6318 "UCell": {
6319 "name": "UCell",
6320 "version": "2.14.0",
6321 "sha256": "06bznwjswqv7fz5m2pjhzzj70c14a6v44sdgwwg436g21znjxpyr",
6322 "depends": ["BiocNeighbors", "BiocParallel", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "data_table"]
6323 },
6324 "UMI4Cats": {
6325 "name": "UMI4Cats",
6326 "version": "1.20.0",
6327 "sha256": "162f89h9jid1bqsym1mqaw7xfnax57na18ng5f815wf2r2x03a3i",
6328 "depends": ["BSgenome", "BiocFileCache", "BiocGenerics", "Biostrings", "DESeq2", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "R_utils", "Rbowtie2", "Rsamtools", "S4Vectors", "ShortRead", "SummarizedExperiment", "annotate", "cowplot", "dplyr", "fda", "ggplot2", "magick", "rappdirs", "regioneR", "reshape2", "rlang", "scales", "stringr", "zoo"]
6329 },
6330 "UNDO": {
6331 "name": "UNDO",
6332 "version": "1.52.0",
6333 "sha256": "1rkrfcl8l4p5pi3qqn0lzyr4l6a75qnp0sdj4hrz5rz72fsqn02y",
6334 "depends": ["Biobase", "BiocGenerics", "MASS", "boot", "nnls"]
6335 },
6336 "UPDhmm": {
6337 "name": "UPDhmm",
6338 "version": "1.6.0",
6339 "sha256": "1rn1jijmpx7j165q210l76hyq3aj7ir02zh64cn85a04razs2qrx",
6340 "depends": ["Biobase", "BiocParallel", "GenomeInfoDb", "GenomicRanges", "HMM", "IRanges", "S4Vectors", "SummarizedExperiment", "VariantAnnotation"]
6341 },
6342 "Ularcirc": {
6343 "name": "Ularcirc",
6344 "version": "1.28.0",
6345 "sha256": "1k8x7g5fgssj01i8b60fyhsh09hmxj06k0ghxrk70jijp8y49906",
6346 "depends": ["AnnotationDbi", "AnnotationHub", "BSgenome", "BiocGenerics", "Biostrings", "DT", "GenomeInfoDb", "GenomeInfoDbData", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Organism_dplyr", "R_utils", "S4Vectors", "data_table", "ggplot2", "ggrepel", "gsubfn", "moments", "plotgardener", "shiny", "shinyFiles", "shinydashboard", "shinyjs", "yaml"]
6347 },
6348 "UniProt_ws": {
6349 "name": "UniProt.ws",
6350 "version": "2.50.0",
6351 "sha256": "0jbn2ijcrpq942afn5gq5f4lqqzgbx4c2r7z0cn9kk69h7q695zv",
6352 "depends": ["AnnotationDbi", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "httr2", "jsonlite", "progress", "rjsoncons", "rlang"]
6353 },
6354 "Uniquorn": {
6355 "name": "Uniquorn",
6356 "version": "2.30.0",
6357 "sha256": "1l068kjphna85z98xwqh4i4qxrvprl4wc8rp9lcgh692vhbsxjgb",
6358 "depends": ["GenomicRanges", "IRanges", "R_utils", "VariantAnnotation", "WriteXLS", "data_table", "doParallel", "foreach", "stringr"]
6359 },
6360 "VAExprs": {
6361 "name": "VAExprs",
6362 "version": "1.16.0",
6363 "sha256": "0ypi6hhqlkv80fgpg36jfsm365ibljsj4h3nn6yqazigaisi7y4c",
6364 "depends": ["CatEncoders", "DeepPINCS", "DiagrammeR", "SingleCellExperiment", "SummarizedExperiment", "keras", "mclust", "purrr", "scater", "tensorflow"]
6365 },
6366 "VCFArray": {
6367 "name": "VCFArray",
6368 "version": "1.26.0",
6369 "sha256": "1j0ckv4d7a6nzxc53sih30kdb3l4bbk6db53zkv0hz4bpdzq6mrw",
6370 "depends": ["BiocGenerics", "DelayedArray", "GenomicFiles", "GenomicRanges", "Rsamtools", "S4Vectors", "VariantAnnotation"]
6371 },
6372 "VDJdive": {
6373 "name": "VDJdive",
6374 "version": "1.12.0",
6375 "sha256": "03vz55d7lpclrw059hp914ak5jrhbmc20kp1siylz2m2izbz7vyy",
6376 "depends": ["BiocParallel", "IRanges", "Matrix", "RColorBrewer", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "cowplot", "ggplot2", "gridExtra"]
6377 },
6378 "VERSO": {
6379 "name": "VERSO",
6380 "version": "1.20.0",
6381 "sha256": "0cg61j5cwp1i9xaj5hknwavjfzq14f1sqkw6zqbghb6bhl99xccx",
6382 "depends": ["Rfast", "ape", "data_tree"]
6383 },
6384 "VaSP": {
6385 "name": "VaSP",
6386 "version": "1.22.0",
6387 "sha256": "0nmjic140biq4rfi7gq2kwh4vk7bicqwmkc4ww93c1lwl674znd0",
6388 "depends": ["GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "ballgown", "cluster", "matrixStats"]
6389 },
6390 "VanillaICE": {
6391 "name": "VanillaICE",
6392 "version": "1.72.0",
6393 "sha256": "0n7ir8r23pf9mazgrmyqyr8d1h1n7pm7p995p1ip0rq4cvbdmz96",
6394 "depends": ["BSgenome_Hsapiens_UCSC_hg18", "Biobase", "BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "MatrixGenerics", "S4Vectors", "SummarizedExperiment", "crlmm", "data_table", "foreach", "lattice", "matrixStats", "oligoClasses"]
6395 },
6396 "VarCon": {
6397 "name": "VarCon",
6398 "version": "1.18.0",
6399 "sha256": "0fancb3r8r8kdzg0668fdjjx08q9zr0hp94ssyiyi20jsvwia0cq",
6400 "depends": ["BSgenome", "Biostrings", "GenomicRanges", "IRanges", "ggplot2", "shiny", "shinyFiles", "shinycssloaders"]
6401 },
6402 "VariantAnnotation": {
6403 "name": "VariantAnnotation",
6404 "version": "1.56.0",
6405 "sha256": "008saw81bnzdyglysqcbmp745k8pxgx3ng7hkpqdry773vf3xfn8",
6406 "depends": ["AnnotationDbi", "BSgenome", "Biobase", "BiocGenerics", "Biostrings", "DBI", "GenomicFeatures", "GenomicRanges", "IRanges", "MatrixGenerics", "Rhtslib", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "XVector", "curl", "rtracklayer"]
6407 },
6408 "VariantExperiment": {
6409 "name": "VariantExperiment",
6410 "version": "1.24.0",
6411 "sha256": "12y7jafybsr74mjgfph87kxhj990bf9v795n3yj1mx4m2wiw211l",
6412 "depends": ["Biostrings", "DelayedArray", "DelayedDataFrame", "GDSArray", "GenomicRanges", "IRanges", "S4Vectors", "SNPRelate", "SeqArray", "SummarizedExperiment", "gdsfmt"]
6413 },
6414 "VariantFiltering": {
6415 "name": "VariantFiltering",
6416 "version": "1.46.0",
6417 "sha256": "070n6iq21pzq2d146d5sh9yjbmpyw617bskyfbfkpz0dh2fhxbgz",
6418 "depends": ["AnnotationDbi", "BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DT", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "GenomicScores", "Gviz", "IRanges", "RBGL", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "XVector", "graph", "shiny", "shinyTree", "shinyjs", "shinythemes"]
6419 },
6420 "VariantTools": {
6421 "name": "VariantTools",
6422 "version": "1.51.0",
6423 "sha256": "14r5hnc095v1h2q2bfsgqfmmmfzdnl5srac3xla1qjq9d8xv5m7v",
6424 "depends": ["BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "Rsamtools", "S4Vectors", "VariantAnnotation", "rtracklayer"]
6425 },
6426 "VegaMC": {
6427 "name": "VegaMC",
6428 "version": "3.48.0",
6429 "sha256": "0b90r3960ghkqp12spj6hkm113r8bbpkl0j68w0mg2070dihdbh4",
6430 "depends": ["Biobase", "biomaRt"]
6431 },
6432 "VennDetail": {
6433 "name": "VennDetail",
6434 "version": "1.26.0",
6435 "sha256": "00c07hvqk5nmmklkaxqig5zn9j0g2fp1xbisfrjmzckcyjcdmmly",
6436 "depends": ["DT", "dplyr", "ggplot2", "htmlwidgets", "magrittr", "patchwork", "plotly", "purrr", "rlang", "shiny", "tibble", "tidyr"]
6437 },
6438 "ViSEAGO": {
6439 "name": "ViSEAGO",
6440 "version": "1.24.0",
6441 "sha256": "1mf5nmyp3n4xl555v0h8iypc3640pnc730v39n8wzmnjcq1rm9yz",
6442 "depends": ["AnnotationDbi", "AnnotationForge", "ComplexHeatmap", "DT", "DiagrammeR", "GOSemSim", "GO_db", "RColorBrewer", "R_utils", "UpSetR", "biomaRt", "circlize", "data_table", "dendextend", "dynamicTreeCut", "fgsea", "ggplot2", "heatmaply", "htmlwidgets", "igraph", "plotly", "scales", "topGO"]
6443 },
6444 "VisiumIO": {
6445 "name": "VisiumIO",
6446 "version": "1.6.0",
6447 "sha256": "1fax22m1nvscsdq4jli6ayp3f971ymfp20kf69vka1ap1amswhli",
6448 "depends": ["BiocBaseUtils", "BiocGenerics", "BiocIO", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "TENxIO", "jsonlite"]
6449 },
6450 "Voyager": {
6451 "name": "Voyager",
6452 "version": "1.12.0",
6453 "sha256": "1iizz27aa18banbrnv45d1pd9avwal6hwwnv4g1sqjbgz6a69sg5",
6454 "depends": ["BiocParallel", "DelayedArray", "Matrix", "MatrixGenerics", "RSpectra", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SpatialFeatureExperiment", "SummarizedExperiment", "bluster", "ggnewscale", "ggplot2", "lifecycle", "memuse", "patchwork", "rlang", "scales", "scico", "sf", "spdep", "terra", "zeallot"]
6455 },
6456 "VplotR": {
6457 "name": "VplotR",
6458 "version": "1.20.0",
6459 "sha256": "1ljkd5yzi6yxcy0xcaqhv152vz9qfyg36ks9h24w93gynfjjl6rc",
6460 "depends": ["GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "cowplot", "ggplot2", "magrittr", "reshape2", "zoo"]
6461 },
6462 "Wrench": {
6463 "name": "Wrench",
6464 "version": "1.28.0",
6465 "sha256": "1llv40v5hcszxxzgg1vlxgg6k8qd0g5wln4cnfj13wzayskgx9na",
6466 "depends": ["limma", "locfit", "matrixStats"]
6467 },
6468 "XAItest": {
6469 "name": "XAItest",
6470 "version": "1.2.0",
6471 "sha256": "0yxnlxrvlz6flds58af5wg3s77jbdgcjg6bdmwl7sb6pz8pbijfg",
6472 "depends": ["DT", "SummarizedExperiment", "caret", "ggplot2", "kernelshap", "lime", "limma", "randomForest"]
6473 },
6474 "XDE": {
6475 "name": "XDE",
6476 "version": "2.56.0",
6477 "sha256": "144ab9pav8bm3fwk8ywlsra1c0n7i33f2461a0zj54ygv1b9hf5m",
6478 "depends": ["Biobase", "BiocGenerics", "GeneMeta", "RColorBrewer", "genefilter", "gtools", "mvtnorm", "siggenes"]
6479 },
6480 "XINA": {
6481 "name": "XINA",
6482 "version": "1.28.0",
6483 "sha256": "1kr6hybs8p86x7l5wxa35kvwq7rmsjl60blfs9xi9c8sqrrgh6dh",
6484 "depends": ["STRINGdb", "alluvial", "ggplot2", "gridExtra", "igraph", "mclust", "plyr"]
6485 },
6486 "XVector": {
6487 "name": "XVector",
6488 "version": "0.50.0",
6489 "sha256": "1473icy90p04ai0swk0ja681x3x00a740n0i81y3ih65si5x0qy9",
6490 "depends": ["BiocGenerics", "IRanges", "S4Vectors"]
6491 },
6492 "XeniumIO": {
6493 "name": "XeniumIO",
6494 "version": "1.2.0",
6495 "sha256": "1m5dy80g2jwws8w9y1zk3x4mlxk2zcplyy6lm27k09na83a5iq9j",
6496 "depends": ["BiocBaseUtils", "BiocGenerics", "BiocIO", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "TENxIO", "VisiumIO", "jsonlite"]
6497 },
6498 "Xeva": {
6499 "name": "Xeva",
6500 "version": "1.26.0",
6501 "sha256": "14icm4q5kk95af721c27kgcza30ws28sinj5l76v2z60if9052k0",
6502 "depends": ["BBmisc", "Biobase", "ComplexHeatmap", "PharmacoGx", "Rmisc", "doParallel", "downloader", "ggplot2", "nlme", "scales"]
6503 },
6504 "YAPSA": {
6505 "name": "YAPSA",
6506 "version": "1.36.0",
6507 "sha256": "0i6s8vhk8ar62g9fzn5zr76w94i11qy7g7gfbbk3kmvg3g4rrj4c",
6508 "depends": ["BSgenome_Hsapiens_UCSC_hg19", "Biostrings", "ComplexHeatmap", "GenomicRanges", "GetoptLong", "KEGGREST", "PMCMRplus", "Seqinfo", "SomaticSignatures", "VariantAnnotation", "circlize", "corrplot", "dendextend", "doParallel", "dplyr", "ggbeeswarm", "ggplot2", "gridExtra", "gtrellis", "limSolve", "magrittr", "pracma", "reshape2"]
6509 },
6510 "ZygosityPredictor": {
6511 "name": "ZygosityPredictor",
6512 "version": "1.10.0",
6513 "sha256": "00nckxl38ajbzxlm011x3zx2q3ka844q6f4fxhyvd8587dl1qlxd",
6514 "depends": ["DelayedArray", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "VariantAnnotation", "dplyr", "igraph", "knitr", "magrittr", "purrr", "readr", "rlang", "stringr", "tibble"]
6515 },
6516 "a4": {
6517 "name": "a4",
6518 "version": "1.58.0",
6519 "sha256": "0smiq7apng2jlqn0l38q2h69a42zl7mqnyx94fy2m7mmdhhkdq0d",
6520 "depends": ["a4Base", "a4Classif", "a4Core", "a4Preproc", "a4Reporting"]
6521 },
6522 "a4Base": {
6523 "name": "a4Base",
6524 "version": "1.58.0",
6525 "sha256": "1xmgg601w9lscc25ryny42qrvvsj511whxgg1fzfqzzmlrmrx267",
6526 "depends": ["Biobase", "a4Core", "a4Preproc", "annaffy", "genefilter", "glmnet", "gplots", "limma", "mpm", "multtest"]
6527 },
6528 "a4Classif": {
6529 "name": "a4Classif",
6530 "version": "1.58.0",
6531 "sha256": "1kfj5pk7canxb4i70sk808ibinfy96418s9ni7r31gi3h1240516",
6532 "depends": ["Biobase", "ROCR", "a4Core", "a4Preproc", "glmnet", "pamr", "varSelRF"]
6533 },
6534 "a4Core": {
6535 "name": "a4Core",
6536 "version": "1.58.0",
6537 "sha256": "10lg59fqsa4vv0sv1nrsaxmirwh6likr14b5cai5p45gya3fgbz4",
6538 "depends": ["Biobase", "glmnet"]
6539 },
6540 "a4Preproc": {
6541 "name": "a4Preproc",
6542 "version": "1.58.0",
6543 "sha256": "0fl9vlndbj8skhn0kl1zpy10g5fjzi36h5pyf8706c6gbfxhkifg",
6544 "depends": ["Biobase", "BiocGenerics"]
6545 },
6546 "a4Reporting": {
6547 "name": "a4Reporting",
6548 "version": "1.58.0",
6549 "sha256": "1q5s52swbkvzz3qghr03m7m17s7qvc8aaymxxaingkwavgsln77c",
6550 "depends": ["xtable"]
6551 },
6552 "aCGH": {
6553 "name": "aCGH",
6554 "version": "1.88.0",
6555 "sha256": "1hqx009xq4j55qdxy3gwgsji0rnj069yj20xfb390ciwa2b1hixk",
6556 "depends": ["Biobase", "cluster", "multtest", "survival"]
6557 },
6558 "abseqR": {
6559 "name": "abseqR",
6560 "version": "1.28.0",
6561 "sha256": "0cgphb2dgh6kdrr8v5zzrdrigvqribwasjhpdnfyldaxvn97b93n",
6562 "depends": ["BiocParallel", "BiocStyle", "RColorBrewer", "VennDiagram", "circlize", "flexdashboard", "ggcorrplot", "ggdendro", "ggplot2", "gridExtra", "knitr", "plotly", "plyr", "png", "reshape2", "rmarkdown", "stringr", "vegan"]
6563 },
6564 "acde": {
6565 "name": "acde",
6566 "version": "1.40.0",
6567 "sha256": "12h52jsc7ql3hj47f1akqpcq5sh3yjrgp5zyz6d4bbsgddy30d4d",
6568 "depends": ["boot"]
6569 },
6570 "adSplit": {
6571 "name": "adSplit",
6572 "version": "1.80.0",
6573 "sha256": "0iqyr96s8hclxvcb3ms2gsrwl2kh84ccdcg26ssvr0w15kh7gwg9",
6574 "depends": ["AnnotationDbi", "Biobase", "GO_db", "KEGGREST", "cluster", "multtest"]
6575 },
6576 "adductomicsR": {
6577 "name": "adductomicsR",
6578 "version": "1.26.0",
6579 "sha256": "0bnhbv344qxfx96z6bjmqn5r8k12i674ip7bw364y3b63swcf7ll",
6580 "depends": ["AnnotationHub", "DT", "ExperimentHub", "OrgMassSpecR", "RcppEigen", "adductData", "ade4", "bootstrap", "data_table", "doSNOW", "dplyr", "fastcluster", "foreach", "fpc", "mzR", "pastecs", "pracma", "reshape2", "rvest", "smoother", "zoo"]
6581 },
6582 "adverSCarial": {
6583 "name": "adverSCarial",
6584 "version": "1.8.0",
6585 "sha256": "0fpgsfmmr4skkry0r95492pm1wlvw7y8q82snzahbc3nbws0y27x",
6586 "depends": ["DelayedArray", "S4Vectors", "gtools"]
6587 },
6588 "affxparser": {
6589 "name": "affxparser",
6590 "version": "1.82.0",
6591 "sha256": "019fq9l77s57k163b7myz50i0zs98gcqvzh1rjg4w6mqivnsp89w",
6592 "depends": []
6593 },
6594 "affy": {
6595 "name": "affy",
6596 "version": "1.88.0",
6597 "sha256": "0jrm1x6wygss4qg338599018izxygvzs0ddlni53pdi7j1f7aw4y",
6598 "depends": ["Biobase", "BiocGenerics", "BiocManager", "affyio", "preprocessCore"]
6599 },
6600 "affyContam": {
6601 "name": "affyContam",
6602 "version": "1.68.0",
6603 "sha256": "1b6akkpaij3jisckh73q3k19x607afdn2ppvp2h7wn9h8h9pljwj",
6604 "depends": ["Biobase", "affy", "affydata"]
6605 },
6606 "affyILM": {
6607 "name": "affyILM",
6608 "version": "1.62.0",
6609 "sha256": "1z0ppsd26frcshxbqwwrf5k79zhicc7cg8qfcyhqj3k696dviaxm",
6610 "depends": ["Biobase", "affxparser", "affy", "gcrma"]
6611 },
6612 "affyPLM": {
6613 "name": "affyPLM",
6614 "version": "1.86.0",
6615 "sha256": "07hbw8q2cqh8ar7y5q6kazl46lqw0k0gg0ckmigcs4551bbsxgp6",
6616 "depends": ["Biobase", "BiocGenerics", "affy", "gcrma", "preprocessCore"]
6617 },
6618 "affycomp": {
6619 "name": "affycomp",
6620 "version": "1.86.0",
6621 "sha256": "03h013gr7l5g7fgbs58bhqb4xblr3bfqkwqir655ck4xls1ywrb9",
6622 "depends": ["Biobase"]
6623 },
6624 "affycoretools": {
6625 "name": "affycoretools",
6626 "version": "1.82.0",
6627 "sha256": "04vbbj8rvpxk3xpgisix6qd92383zyanxx06300ws2agh5wqwx10",
6628 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DBI", "GOstats", "Glimma", "RSQLite", "ReportingTools", "S4Vectors", "affy", "edgeR", "gcrma", "ggplot2", "gplots", "hwriter", "lattice", "limma", "oligoClasses", "xtable"]
6629 },
6630 "affyio": {
6631 "name": "affyio",
6632 "version": "1.80.0",
6633 "sha256": "1qnxxixskak3259rs1smpc7w51ycilb510rlqas4wq53ckwbmhql",
6634 "depends": []
6635 },
6636 "affylmGUI": {
6637 "name": "affylmGUI",
6638 "version": "1.84.0",
6639 "sha256": "0rpfx60qsx0ia0xx1r0bhv44sh376z10dsgk903y80pfazrd3jn9",
6640 "depends": ["AnnotationDbi", "BiocGenerics", "BiocManager", "R2HTML", "affy", "affyPLM", "affyio", "gcrma", "limma", "tkrplot", "xtable"]
6641 },
6642 "aggregateBioVar": {
6643 "name": "aggregateBioVar",
6644 "version": "1.20.0",
6645 "sha256": "0wk6y4crv1xwapccpk5cd0klr93v94q8w0x9r0m0cpqc38a052s7",
6646 "depends": ["Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "rlang", "tibble"]
6647 },
6648 "agilp": {
6649 "name": "agilp",
6650 "version": "3.42.0",
6651 "sha256": "1hw15kv5f543wjzwc0ky41l2vnjax2p8pjszx3x5iwzlvjb5xsca",
6652 "depends": []
6653 },
6654 "airpart": {
6655 "name": "airpart",
6656 "version": "1.18.0",
6657 "sha256": "0bgz8pnjy9vxzbl6f7cn81mcs5wwqwjzdnlfciskzmk0wnn7k8sg",
6658 "depends": ["ComplexHeatmap", "RColorBrewer", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "apeglm", "clue", "dplyr", "dynamicTreeCut", "emdbook", "forestplot", "ggplot2", "lpSolve", "matrixStats", "mclust", "pbapply", "plyr", "rlang", "scater", "smurf"]
6659 },
6660 "alabaster": {
6661 "name": "alabaster",
6662 "version": "1.10.0",
6663 "sha256": "1vn835gjadgjh3fw3h2qw9i7fdyaxgsyba3l6kfgqa9vq6l81x28",
6664 "depends": ["alabaster_base", "alabaster_bumpy", "alabaster_mae", "alabaster_matrix", "alabaster_ranges", "alabaster_sce", "alabaster_se", "alabaster_spatial", "alabaster_string", "alabaster_vcf"]
6665 },
6666 "alabaster_base": {
6667 "name": "alabaster.base",
6668 "version": "1.10.0",
6669 "sha256": "03bjpa6r8cin45gmxsdf232c15fj2r5i5kg33h748qxzip376vmj",
6670 "depends": ["Rcpp", "Rhdf5lib", "S4Vectors", "alabaster_schemas", "assorthead", "jsonlite", "jsonvalidate", "rhdf5"]
6671 },
6672 "alabaster_bumpy": {
6673 "name": "alabaster.bumpy",
6674 "version": "1.10.0",
6675 "sha256": "1yrall9sh84gv550rd0w9qyvr6w06dw5zhdq5a9qrjkc81vzmn4p",
6676 "depends": ["BiocGenerics", "BumpyMatrix", "IRanges", "Matrix", "S4Vectors", "alabaster_base", "rhdf5"]
6677 },
6678 "alabaster_files": {
6679 "name": "alabaster.files",
6680 "version": "1.8.0",
6681 "sha256": "0648rlmllm46ffh807wq670p2v3pfs3y2pwmh0dpb8svqx02pmc5",
6682 "depends": ["BiocGenerics", "Rsamtools", "S4Vectors", "alabaster_base"]
6683 },
6684 "alabaster_mae": {
6685 "name": "alabaster.mae",
6686 "version": "1.10.0",
6687 "sha256": "1fqq06gx8zxx4ika3yh880xy5y40d71yai7468azlhg24chj6342",
6688 "depends": ["MultiAssayExperiment", "S4Vectors", "alabaster_base", "alabaster_se", "jsonlite", "rhdf5"]
6689 },
6690 "alabaster_matrix": {
6691 "name": "alabaster.matrix",
6692 "version": "1.10.0",
6693 "sha256": "117ai8v7snbs2kgw9fihp8rzqxgaq19l1jscdickq2k5ci985hdd",
6694 "depends": ["BiocGenerics", "DelayedArray", "HDF5Array", "Matrix", "Rcpp", "S4Arrays", "S4Vectors", "SparseArray", "alabaster_base", "rhdf5"]
6695 },
6696 "alabaster_ranges": {
6697 "name": "alabaster.ranges",
6698 "version": "1.10.0",
6699 "sha256": "0vlsrp3s21fq6g3w2ryp9kcclnh7m174l3a7rxk22yanfy65jmgm",
6700 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "alabaster_base", "rhdf5"]
6701 },
6702 "alabaster_sce": {
6703 "name": "alabaster.sce",
6704 "version": "1.10.0",
6705 "sha256": "0lgymw7g2ph24f6j95zqjmh5zwn5z8lfn17bdn0wj83hrrrkcwlb",
6706 "depends": ["SingleCellExperiment", "alabaster_base", "alabaster_se", "jsonlite"]
6707 },
6708 "alabaster_schemas": {
6709 "name": "alabaster.schemas",
6710 "version": "1.10.0",
6711 "sha256": "1zg72g6krc1jf4izghqg3shn2zdrvsqljdbhvifismca7bqqn80a",
6712 "depends": []
6713 },
6714 "alabaster_se": {
6715 "name": "alabaster.se",
6716 "version": "1.10.0",
6717 "sha256": "0298m0a16ibfkjsimf35qq0dj8pvzw0y762d6mxajrhbhby8bggs",
6718 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "alabaster_base", "alabaster_matrix", "alabaster_ranges", "jsonlite"]
6719 },
6720 "alabaster_sfe": {
6721 "name": "alabaster.sfe",
6722 "version": "1.2.0",
6723 "sha256": "1306n9l8xr29pgh77yqsdi5ns3vm80d6i22pyzlxjb0c6j16h9xa",
6724 "depends": ["EBImage", "RBioFormats", "S4Vectors", "SingleCellExperiment", "SpatialFeatureExperiment", "SummarizedExperiment", "alabaster_base", "alabaster_sce", "alabaster_spatial", "jsonlite", "sfarrow", "spatialreg", "spdep", "terra", "xml2"]
6725 },
6726 "alabaster_spatial": {
6727 "name": "alabaster.spatial",
6728 "version": "1.10.0",
6729 "sha256": "022zqn8kvnxm2zlra2w9i43g8lvbiqhjwajkyzkj3pd98i59j41v",
6730 "depends": ["S4Vectors", "SpatialExperiment", "alabaster_base", "alabaster_sce", "rhdf5"]
6731 },
6732 "alabaster_string": {
6733 "name": "alabaster.string",
6734 "version": "1.10.0",
6735 "sha256": "01m93r7v9b00jc8spmfash7c85niw5bhd60bj2hmvmww0wdmrsqb",
6736 "depends": ["Biostrings", "S4Vectors", "alabaster_base"]
6737 },
6738 "alabaster_vcf": {
6739 "name": "alabaster.vcf",
6740 "version": "1.10.0",
6741 "sha256": "1r92dy7qgnz4jqmqv6dinj1g7bs5axylr9yyg41d5h9mcax6vnpn",
6742 "depends": ["Rsamtools", "S4Vectors", "VariantAnnotation", "alabaster_base", "alabaster_se", "alabaster_string"]
6743 },
6744 "alevinQC": {
6745 "name": "alevinQC",
6746 "version": "1.26.0",
6747 "sha256": "0nr21wsfh3an9bczl26xlhmwh2kq21qyjmk5a940w83l1pj6l4q8",
6748 "depends": ["DT", "GGally", "Rcpp", "cowplot", "dplyr", "ggplot2", "rjson", "rlang", "rmarkdown", "shiny", "shinydashboard", "tximport"]
6749 },
6750 "altcdfenvs": {
6751 "name": "altcdfenvs",
6752 "version": "2.72.0",
6753 "sha256": "0b0cak4dk33h1nqi81xyz7b7hdmkd30zg2lnbrm9bdml0sm5c15c",
6754 "depends": ["Biobase", "BiocGenerics", "Biostrings", "S4Vectors", "affy", "hypergraph", "makecdfenv"]
6755 },
6756 "anansi": {
6757 "name": "anansi",
6758 "version": "1.0.0",
6759 "sha256": "0vhj83nv9lnzppijvinm9xargcgsbhpy8475krxp79byb1qpqb52",
6760 "depends": ["Matrix", "MultiAssayExperiment", "S4Vectors", "S7", "SingleCellExperiment", "SummarizedExperiment", "TreeSummarizedExperiment", "forcats", "ggforce", "ggplot2", "ggraph", "igraph", "patchwork", "rlang", "tidygraph"]
6761 },
6762 "anglemania": {
6763 "name": "anglemania",
6764 "version": "1.0.0",
6765 "sha256": "0qbhixgn96iq1f10kyfggq5kvvsx03agd547w8pl48pavrs3qrmv",
6766 "depends": ["Matrix", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "bigparallelr", "bigstatsr", "checkmate", "digest", "dplyr", "pbapply", "rmio", "tidyr", "withr"]
6767 },
6768 "animalcules": {
6769 "name": "animalcules",
6770 "version": "1.26.0",
6771 "sha256": "1a614al4vh6fzmzw8v8r1hn0fpmazrqfzspvmwg8injg36ab1i9x",
6772 "depends": ["DESeq2", "DT", "GUniFrac", "Matrix", "MultiAssayExperiment", "ROCit", "S4Vectors", "SummarizedExperiment", "XML", "ape", "assertthat", "caret", "covr", "dplyr", "forcats", "ggforce", "ggplot2", "lattice", "limma", "magrittr", "plotly", "rentrez", "reshape2", "scales", "shiny", "shinyjs", "tibble", "tidyr", "tsne", "umap", "vegan"]
6773 },
6774 "annaffy": {
6775 "name": "annaffy",
6776 "version": "1.82.0",
6777 "sha256": "0rn29k1ywsnblqn8zkfqg4x719ghz7i6h6k730yypba38h929h51",
6778 "depends": ["AnnotationDbi", "Biobase", "BiocManager", "DBI", "GO_db"]
6779 },
6780 "anndataR": {
6781 "name": "anndataR",
6782 "version": "1.0.0",
6783 "sha256": "1lyf491kqjg07n1p9w9nraz3piz9shd119y2b8p0sifqkvp8pvzy",
6784 "depends": ["Matrix", "R6", "cli", "lifecycle", "purrr", "reticulate", "rlang"]
6785 },
6786 "annmap": {
6787 "name": "annmap",
6788 "version": "1.52.0",
6789 "sha256": "0s5shla97scq17zc336l4mjmshrj63jcawcy3c06p8msbjgay5y8",
6790 "depends": ["Biobase", "BiocGenerics", "DBI", "GenomicRanges", "IRanges", "RMySQL", "Rsamtools", "digest", "genefilter", "lattice"]
6791 },
6792 "annotate": {
6793 "name": "annotate",
6794 "version": "1.88.0",
6795 "sha256": "1ry6111qca2cx2fav5rk6sdwcng64lv2ahjhggixzflmag4gjqnq",
6796 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DBI", "XML", "httr", "xtable"]
6797 },
6798 "annotationTools": {
6799 "name": "annotationTools",
6800 "version": "1.84.0",
6801 "sha256": "18rn954nrv2dil6hhkmjh3zyihyn8zc5nqdrp63i6ya66602q7g8",
6802 "depends": ["Biobase"]
6803 },
6804 "annotatr": {
6805 "name": "annotatr",
6806 "version": "1.36.0",
6807 "sha256": "02l3xq8mgpabd9j57r40aqv8yd63yarrv2hlbapf3cr516n2hcks",
6808 "depends": ["AnnotationDbi", "AnnotationHub", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "dplyr", "ggplot2", "readr", "regioneR", "reshape2", "rlang", "rtracklayer"]
6809 },
6810 "anota": {
6811 "name": "anota",
6812 "version": "1.58.0",
6813 "sha256": "15lyasxjsf812gx3ylhl4ajsvbpl8l685wp18gln97qq77l9ldcr",
6814 "depends": ["multtest", "qvalue"]
6815 },
6816 "anota2seq": {
6817 "name": "anota2seq",
6818 "version": "1.32.0",
6819 "sha256": "0kx8jfidm763rw3zhyr18995k3hrgn701k71awwymghagymm2w8n",
6820 "depends": ["DESeq2", "RColorBrewer", "SummarizedExperiment", "edgeR", "limma", "multtest", "qvalue"]
6821 },
6822 "antiProfiles": {
6823 "name": "antiProfiles",
6824 "version": "1.50.0",
6825 "sha256": "0hj48iq6cz231yasqnb564aqpp9k69v9hqh49shj39s81cral2wp",
6826 "depends": ["locfit", "matrixStats"]
6827 },
6828 "apComplex": {
6829 "name": "apComplex",
6830 "version": "2.76.0",
6831 "sha256": "0x2ylr3fv0p88ydnibnzdaz4388vl9af893cc0rq1brrcccsdwhl",
6832 "depends": ["RBGL", "Rgraphviz", "graph", "org_Sc_sgd_db"]
6833 },
6834 "apeglm": {
6835 "name": "apeglm",
6836 "version": "1.32.0",
6837 "sha256": "1my4y7pgl162xv643fj5klsy100mdyyxa7g1l8dwwy134n3ydqch",
6838 "depends": ["GenomicRanges", "Rcpp", "RcppEigen", "RcppNumerical", "SummarizedExperiment", "emdbook"]
6839 },
6840 "appreci8R": {
6841 "name": "appreci8R",
6842 "version": "1.28.0",
6843 "sha256": "0wkscw6hqqzpis0mf1ixlsaf2z52imriyl5mdb5kmnxgrbv172x9",
6844 "depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "Biostrings", "COSMIC_67", "DT", "GenomicFeatures", "GenomicRanges", "GenomicScores", "Homo_sapiens", "IRanges", "MafDb_1Kgenomes_phase3_hs37d5", "MafDb_ExAC_r1_0_hs37d5", "MafDb_gnomADex_r2_1_hs37d5", "PolyPhen_Hsapiens_dbSNP131", "Rsamtools", "S4Vectors", "SIFT_Hsapiens_dbSNP137", "SNPlocs_Hsapiens_dbSNP144_GRCh37", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "VariantAnnotation", "XtraSNPlocs_Hsapiens_dbSNP144_GRCh37", "openxlsx", "rentrez", "seqinr", "shiny", "shinyjs", "stringr"]
6845 },
6846 "aroma_light": {
6847 "name": "aroma.light",
6848 "version": "3.40.0",
6849 "sha256": "1jr8x2hiby46a3n456nnpsjdq37b0f429jh8mlia4zg1wy64bws8",
6850 "depends": ["R_methodsS3", "R_oo", "R_utils", "matrixStats"]
6851 },
6852 "arrayMvout": {
6853 "name": "arrayMvout",
6854 "version": "1.68.0",
6855 "sha256": "0fwss499m64ilf2adk3l71w3xgqbj3lr2g72xwq95a4nz8vvlic2",
6856 "depends": ["Biobase", "affy", "affyContam", "lumi", "mdqc", "parody"]
6857 },
6858 "arrayQuality": {
6859 "name": "arrayQuality",
6860 "version": "1.88.0",
6861 "sha256": "1nkq6ys02jjinprbphikm9pym17bvvh7d5wrpl0jyj7x9jabw443",
6862 "depends": ["RColorBrewer", "gridBase", "hexbin", "limma", "marray"]
6863 },
6864 "artMS": {
6865 "name": "artMS",
6866 "version": "1.28.0",
6867 "sha256": "0sdxcaklcfqjad5kz5lskv04x2p8wxspav7avaznx6wz2xsx68wh",
6868 "depends": ["AnnotationDbi", "MSstats", "RColorBrewer", "UpSetR", "VennDiagram", "bit64", "circlize", "cluster", "corrplot", "data_table", "dplyr", "getopt", "ggdendro", "ggplot2", "ggrepel", "gplots", "limma", "openxlsx", "org_Hs_eg_db", "pheatmap", "plotly", "plyr", "scales", "seqinr", "stringr", "tidyr", "yaml"]
6869 },
6870 "assorthead": {
6871 "name": "assorthead",
6872 "version": "1.4.0",
6873 "sha256": "0ysi3ak87pg7b5iqj9dnwkx11xdrqs0lfcw4q835lrswg92sf9gx",
6874 "depends": []
6875 },
6876 "atSNP": {
6877 "name": "atSNP",
6878 "version": "1.26.0",
6879 "sha256": "12jkk8pabndcavb284ncgxxxlw43bfgcpa5nkp6wchzfyqjzcind",
6880 "depends": ["BSgenome", "BiocFileCache", "BiocParallel", "Rcpp", "data_table", "ggplot2", "lifecycle", "motifStack", "rappdirs", "testthat"]
6881 },
6882 "atena": {
6883 "name": "atena",
6884 "version": "1.16.0",
6885 "sha256": "02jbsk6inh63pcsandwik8cc0dd1q30raddkgxs7pszwlkdk1q73",
6886 "depends": ["AnnotationHub", "BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "MatrixGenerics", "Rsamtools", "S4Vectors", "SQUAREM", "Seqinfo", "SummarizedExperiment", "cli", "matrixStats", "sparseMatrixStats"]
6887 },
6888 "attract": {
6889 "name": "attract",
6890 "version": "1.62.0",
6891 "sha256": "14ni9c36gar0cny7dyp433a9fmh96z9l553jwfpvl3hw02g038f7",
6892 "depends": ["AnnotationDbi", "Biobase", "GOstats", "KEGGREST", "cluster", "limma", "org_Hs_eg_db", "reactome_db"]
6893 },
6894 "autonomics": {
6895 "name": "autonomics",
6896 "version": "1.18.0",
6897 "sha256": "02ygvvvkypwdi5rq9xjym4l4wzxn4v6h73nl426cx20q6x7wm33s",
6898 "depends": ["BiocFileCache", "BiocGenerics", "MultiAssayExperiment", "RColorBrewer", "R_utils", "S4Vectors", "SummarizedExperiment", "abind", "arrow", "bit64", "cluster", "codingMatrices", "colorspace", "data_table", "dplyr", "edgeR", "ggforce", "ggplot2", "ggrepel", "gridExtra", "limma", "lme4", "magrittr", "matrixStats", "readxl", "rlang", "scales", "stringi", "survival", "tidyr", "tidyselect", "vsn"]
6899 },
6900 "awst": {
6901 "name": "awst",
6902 "version": "1.18.0",
6903 "sha256": "0caffj4k54qsc2py2411442n7m7bwchxk9lnc8cpbx2v18g546k9",
6904 "depends": ["SummarizedExperiment"]
6905 },
6906 "bacon": {
6907 "name": "bacon",
6908 "version": "1.38.0",
6909 "sha256": "09y0q0dqpay4ag3wmwhqjk140cc44l3a6k3f4fiv47b3cmq50qpg",
6910 "depends": ["BiocParallel", "ellipse", "ggplot2"]
6911 },
6912 "ballgown": {
6913 "name": "ballgown",
6914 "version": "2.42.0",
6915 "sha256": "1c7vy10ga3cswsqwxljbgqlsjg0d2lx9srfknbjy4fkbyrjci15k",
6916 "depends": ["Biobase", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "Seqinfo", "limma", "rtracklayer", "sva"]
6917 },
6918 "bambu": {
6919 "name": "bambu",
6920 "version": "3.12.0",
6921 "sha256": "0bdwild1lxnizkwlcscl9vjnhqiri79p8vwkgw5a2lxkfj1gz1p8",
6922 "depends": ["BSgenome", "BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rcpp", "RcppArmadillo", "Rsamtools", "S4Vectors", "SummarizedExperiment", "data_table", "dplyr", "tidyr", "xgboost"]
6923 },
6924 "bamsignals": {
6925 "name": "bamsignals",
6926 "version": "1.42.0",
6927 "sha256": "03lqryry0jyangihscjmbsvy3s2skz50jwnl25vb44wzqkqxgmvl",
6928 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "Rcpp", "Rhtslib"]
6929 },
6930 "bandle": {
6931 "name": "bandle",
6932 "version": "1.14.0",
6933 "sha256": "1nydm87m1knayzs6sz208z2bxr6caabb60p37268cix9x1941qp4",
6934 "depends": ["BH", "Biobase", "BiocParallel", "BiocStyle", "MSnbase", "RColorBrewer", "Rcpp", "RcppArmadillo", "S4Vectors", "circlize", "coda", "dplyr", "ggalluvial", "ggplot2", "ggrepel", "gridExtra", "gtools", "knitr", "lbfgs", "pRoloc", "pRolocdata", "plyr", "rlang", "robustbase", "tidyr"]
6935 },
6936 "banocc": {
6937 "name": "banocc",
6938 "version": "1.34.0",
6939 "sha256": "0y2capm8b2dx68myybzgf74khm22rjqihg9l1g03xpv1k19jlc90",
6940 "depends": ["coda", "mvtnorm", "rstan", "stringr"]
6941 },
6942 "barbieQ": {
6943 "name": "barbieQ",
6944 "version": "1.2.0",
6945 "sha256": "19zzrw4y0lar36pz8izniy5rdck7jn5wy7aqlp6qwrqwim9yl52m",
6946 "depends": ["ComplexHeatmap", "S4Vectors", "SummarizedExperiment", "circlize", "data_table", "dplyr", "ggplot2", "igraph", "limma", "logistf", "magrittr", "tidyr"]
6947 },
6948 "basecallQC": {
6949 "name": "basecallQC",
6950 "version": "1.34.0",
6951 "sha256": "1yyz87r8wcwsggfbrbpy8xiqqs7i4zqw1mqjd0hfyx6yja4kp7fz",
6952 "depends": ["DT", "ShortRead", "XML", "data_table", "dplyr", "ggplot2", "knitr", "lazyeval", "magrittr", "prettydoc", "raster", "rmarkdown", "stringr", "tidyr", "yaml"]
6953 },
6954 "basilisk": {
6955 "name": "basilisk",
6956 "version": "1.22.0",
6957 "sha256": "0127ilysjfp7d2nhrrxd84jk9r6flcgk5f1wgy7r9ivyw484023a",
6958 "depends": ["dir_expiry", "reticulate"]
6959 },
6960 "basilisk_utils": {
6961 "name": "basilisk.utils",
6962 "version": "1.22.0",
6963 "sha256": "1pqdkfg7jifl52ada9d70xhbhknm54g9wzxsnca0q9plgpiddmz9",
6964 "depends": ["dir_expiry"]
6965 },
6966 "batchCorr": {
6967 "name": "batchCorr",
6968 "version": "1.0.0",
6969 "sha256": "08n9k14fwhljp2mfcyza0zwsd04kwnk1w4x76mgi8bn9r6a60vgr",
6970 "depends": ["BiocParallel", "SummarizedExperiment", "mclust", "reshape"]
6971 },
6972 "batchelor": {
6973 "name": "batchelor",
6974 "version": "1.26.0",
6975 "sha256": "0s991n072s7vbcj2ad5zh079iwwcqx92m6h0wmif3wma0qpw16g2",
6976 "depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "BiocSingular", "DelayedArray", "DelayedMatrixStats", "Matrix", "Rcpp", "ResidualMatrix", "S4Vectors", "ScaledMatrix", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "beachmat", "igraph", "scuttle"]
6977 },
6978 "bayNorm": {
6979 "name": "bayNorm",
6980 "version": "1.28.0",
6981 "sha256": "0cpc1l8xsmzz8qfc9izq6a6ajv8bl3yrv64qhji3nq9bv4ln5f7z",
6982 "depends": ["BB", "BiocParallel", "MASS", "Matrix", "Rcpp", "RcppArmadillo", "RcppProgress", "SingleCellExperiment", "SummarizedExperiment", "doSNOW", "fitdistrplus", "foreach", "iterators", "locfit"]
6983 },
6984 "baySeq": {
6985 "name": "baySeq",
6986 "version": "2.44.0",
6987 "sha256": "0zljz45xcixipyprirvvzyx9v2hjbwr6wdv9zz0b8gpdriv5c0g0",
6988 "depends": ["GenomicRanges", "abind", "edgeR"]
6989 },
6990 "bcSeq": {
6991 "name": "bcSeq",
6992 "version": "1.32.0",
6993 "sha256": "0r2qdn676lfmk56id0v6ahj2v6ajaxgsrgr2x8slzw6zijybvlsc",
6994 "depends": ["Biostrings", "Matrix", "Rcpp"]
6995 },
6996 "beachmat": {
6997 "name": "beachmat",
6998 "version": "2.26.0",
6999 "sha256": "1s2v4d49yc1r1cla1p54zkcw14bazgz8fmzb1khqngbi26apmk0p",
7000 "depends": ["BiocGenerics", "DelayedArray", "Matrix", "Rcpp", "SparseArray", "assorthead"]
7001 },
7002 "beachmat_hdf5": {
7003 "name": "beachmat.hdf5",
7004 "version": "1.8.0",
7005 "sha256": "0dp8p111ar64syvh4x7s4rwjj4vhil1c09r5am48c0cg789qx49y",
7006 "depends": ["DelayedArray", "HDF5Array", "Rcpp", "Rhdf5lib", "assorthead", "beachmat"]
7007 },
7008 "beachmat_tiledb": {
7009 "name": "beachmat.tiledb",
7010 "version": "1.2.0",
7011 "sha256": "1x6nz89mjp83qh70c3bbrq8zfb6fk0pv75hsnhi7dsvk1sp9d537",
7012 "depends": ["DelayedArray", "Rcpp", "TileDBArray", "assorthead", "beachmat", "tiledb"]
7013 },
7014 "bedbaser": {
7015 "name": "bedbaser",
7016 "version": "1.2.0",
7017 "sha256": "13ncvwpm7zplyhkqg8pmn4nkd4lv2dgwb2pjr25xciji4ixgdcmq",
7018 "depends": ["AnVIL", "BiocFileCache", "GenomeInfoDb", "GenomicRanges", "R_utils", "dplyr", "httr", "purrr", "rlang", "rtracklayer", "stringr", "tibble", "tidyr"]
7019 },
7020 "beer": {
7021 "name": "beer",
7022 "version": "1.14.0",
7023 "sha256": "0c3plk1cibcka6ky043h98ibqsy8nmhs812n3bvafq9w3wz6dch0",
7024 "depends": ["BiocParallel", "PhIPData", "SummarizedExperiment", "cli", "edgeR", "progressr", "rjags"]
7025 },
7026 "betaHMM": {
7027 "name": "betaHMM",
7028 "version": "1.6.0",
7029 "sha256": "00j4k8z0kfr14k3ahfzqhc3sf00ll7yvwhyjhbcwr6vi8dpm7s01",
7030 "depends": ["GenomicRanges", "S4Vectors", "SummarizedExperiment", "cowplot", "doParallel", "dplyr", "foreach", "ggplot2", "pROC", "scales", "stringr", "tidyr", "tidyselect"]
7031 },
7032 "bettr": {
7033 "name": "bettr",
7034 "version": "1.6.0",
7035 "sha256": "1ns7jazl31w2ivbbnf3f8502nszkwsskn7rkl7kjvh9l8lrakdyw",
7036 "depends": ["ComplexHeatmap", "DT", "Hmisc", "S4Vectors", "SummarizedExperiment", "bslib", "circlize", "cowplot", "dplyr", "ggplot2", "rlang", "scales", "shiny", "shinyjqui", "sortable", "tibble", "tidyr"]
7037 },
7038 "bigmelon": {
7039 "name": "bigmelon",
7040 "version": "1.36.0",
7041 "sha256": "0m5nc9vsm1y1mgdq7fscdnfmdxs85xml863lsyc7vxknlgpdl6yq",
7042 "depends": ["Biobase", "BiocGenerics", "GEOquery", "gdsfmt", "illuminaio", "methylumi", "minfi", "wateRmelon"]
7043 },
7044 "bioCancer": {
7045 "name": "bioCancer",
7046 "version": "1.38.0",
7047 "sha256": "08b34kcx3h6mk9f7mlvbqpasyb0wa0vp07s685biphwl7355zdpn",
7048 "depends": ["AlgDesign", "AnnotationDbi", "Biobase", "DOSE", "DT", "DiagrammeR", "GO_db", "R_methodsS3", "R_oo", "ReactomePA", "XML", "cBioPortalData", "clusterProfiler", "dplyr", "geNetClassifier", "htmlwidgets", "org_Bt_eg_db", "org_Hs_eg_db", "plyr", "r_import", "radiant_data", "reactome_db", "shiny", "shinythemes", "tibble", "tidyr", "visNetwork"]
7049 },
7050 "bioDist": {
7051 "name": "bioDist",
7052 "version": "1.82.0",
7053 "sha256": "1gyqvh0wpq64nw26dhycn98366yg0cgvaz7k5mxa68fh7zjy8ima",
7054 "depends": ["Biobase", "KernSmooth"]
7055 },
7056 "bioassayR": {
7057 "name": "bioassayR",
7058 "version": "1.48.0",
7059 "sha256": "1jyw6msz40k47ai919zc2y9j13g2y745wh9r4gg794zlv092l1jg",
7060 "depends": ["BiocGenerics", "ChemmineR", "DBI", "Matrix", "RSQLite", "XML", "rjson"]
7061 },
7062 "biobroom": {
7063 "name": "biobroom",
7064 "version": "1.42.0",
7065 "sha256": "0d4c9qqwd5zm5y9xcskfjashqkdiy0ri3gsj1kmfb5zmv8i8666s",
7066 "depends": ["Biobase", "broom", "dplyr", "tidyr"]
7067 },
7068 "biobtreeR": {
7069 "name": "biobtreeR",
7070 "version": "1.22.0",
7071 "sha256": "0kcnphyqlr28h63ih6hy6a8kmcf3cgs0dihfkmmxmybqx7af6n43",
7072 "depends": ["httpuv", "httr", "jsonlite", "stringi"]
7073 },
7074 "biocGraph": {
7075 "name": "biocGraph",
7076 "version": "1.72.0",
7077 "sha256": "13bc5kqvfpx2kl9hs2hcna8z73rjgdyn5cm30016f7m7xpggnkna",
7078 "depends": ["BiocGenerics", "Rgraphviz", "geneplotter", "graph"]
7079 },
7080 "biocViews": {
7081 "name": "biocViews",
7082 "version": "1.78.0",
7083 "sha256": "1dfsfj4dm9wnh4qr1sqdrwzccl3pgw58j17vr3i1bvxkrq31p1ws",
7084 "depends": ["Biobase", "BiocManager", "RBGL", "RCurl", "RUnit", "XML", "graph"]
7085 },
7086 "biocmake": {
7087 "name": "biocmake",
7088 "version": "1.2.0",
7089 "sha256": "1f5xbdfdg0nwlv3csszjyqb3s34369fifazd7hzys15z6y4mhqnc",
7090 "depends": ["dir_expiry"]
7091 },
7092 "biocroxytest": {
7093 "name": "biocroxytest",
7094 "version": "1.6.0",
7095 "sha256": "14k4mk4xyi1r1r1836x73br188n3wj86s2h2szkj26hhncayy3np",
7096 "depends": ["cli", "glue", "roxygen2", "stringr"]
7097 },
7098 "biocthis": {
7099 "name": "biocthis",
7100 "version": "1.20.0",
7101 "sha256": "0svn4156jnf1ql1ln6x0c80h7z0gkxlfcn3q644ahpi18s6w0pil",
7102 "depends": ["BiocManager", "fs", "glue", "rlang", "styler", "usethis"]
7103 },
7104 "biodb": {
7105 "name": "biodb",
7106 "version": "1.18.0",
7107 "sha256": "0462420y1pz1h09kd3bgwz9jazaqd4yzwz5815x438lfsdj5vxvv",
7108 "depends": ["R6", "RSQLite", "Rcpp", "XML", "chk", "fscache", "jsonlite", "lgr", "lifecycle", "openssl", "plyr", "progress", "rappdirs", "sched", "sqlq", "stringr", "testthat", "withr", "yaml"]
7109 },
7110 "biodbChebi": {
7111 "name": "biodbChebi",
7112 "version": "1.16.0",
7113 "sha256": "1kk9i3jhg982s39nvxqhpi8q7lxhdyb0scvx34fxaaqgfjb3lxkk",
7114 "depends": ["R6", "biodb"]
7115 },
7116 "biomaRt": {
7117 "name": "biomaRt",
7118 "version": "2.66.0",
7119 "sha256": "0xvwn4s7lxd2g98x6bng4w2vvxp26s57wzq2pij4f117xscad42f",
7120 "depends": ["AnnotationDbi", "BiocFileCache", "curl", "httr2", "progress", "stringr", "xml2"]
7121 },
7122 "biomformat": {
7123 "name": "biomformat",
7124 "version": "1.38.0",
7125 "sha256": "1ydcgifdrgg48y7qxg0gw30h332y3yk3k3n17fajkv58mlvyx1yc",
7126 "depends": ["Matrix", "jsonlite", "plyr", "rhdf5"]
7127 },
7128 "biomvRCNS": {
7129 "name": "biomvRCNS",
7130 "version": "1.50.0",
7131 "sha256": "1avg6nzw15fs2c02yr33ny4gmnx4ygn5f3l2dk0cfxd6q6cjpjyy",
7132 "depends": ["GenomicRanges", "Gviz", "IRanges", "mvtnorm"]
7133 },
7134 "biosigner": {
7135 "name": "biosigner",
7136 "version": "1.38.0",
7137 "sha256": "1c3sv00g1b8v8pb98riszpdwazx2wpvb2sm5vh89b7sdy4hbppfk",
7138 "depends": ["Biobase", "MultiAssayExperiment", "MultiDataSet", "SummarizedExperiment", "e1071", "randomForest", "ropls"]
7139 },
7140 "biotmle": {
7141 "name": "biotmle",
7142 "version": "1.34.0",
7143 "sha256": "17mjhybxffr36awc85qfsdbndzin90x4xq2isi2cdag52vr6jczr",
7144 "depends": ["BiocGenerics", "BiocParallel", "S4Vectors", "SummarizedExperiment", "assertthat", "dplyr", "drtmle", "ggplot2", "ggsci", "limma", "superheat", "tibble"]
7145 },
7146 "biovizBase": {
7147 "name": "biovizBase",
7148 "version": "1.58.0",
7149 "sha256": "1fx6plg3jdy9frs7p6bmxnbkyxa06bw9iyyqlw96ifi5zarkf8vl",
7150 "depends": ["AnnotationDbi", "AnnotationFilter", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Hmisc", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "dichromat", "ensembldb", "rlang", "scales"]
7151 },
7152 "biscuiteer": {
7153 "name": "biscuiteer",
7154 "version": "1.24.0",
7155 "sha256": "074gqvjcl8y30a6s0ivjrdf1lcyafj6l5krdd88q0ldlsik1z7fk",
7156 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "DelayedMatrixStats", "GenomeInfoDb", "GenomicRanges", "HDF5Array", "Homo_sapiens", "IRanges", "Matrix", "Mus_musculus", "QDNAseq", "R_utils", "Rsamtools", "S4Vectors", "SummarizedExperiment", "VariantAnnotation", "biscuiteerData", "bsseq", "data_table", "dmrseq", "gtools", "impute", "matrixStats", "qualV", "readr", "rtracklayer"]
7157 },
7158 "blacksheepr": {
7159 "name": "blacksheepr",
7160 "version": "1.24.0",
7161 "sha256": "0bb9l54wppqz8llq71riqk29mg4dibnyx62k5pk30rrzahp71m02",
7162 "depends": ["ComplexHeatmap", "RColorBrewer", "SummarizedExperiment", "circlize", "pasilla", "viridis"]
7163 },
7164 "blase": {
7165 "name": "blase",
7166 "version": "1.0.0",
7167 "sha256": "0hg3bc0lnc47ssj2dslddq6wzkq2snjck97zbk9n4rpim0hmrwz0",
7168 "depends": ["BiocParallel", "Matrix", "MatrixGenerics", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "boot", "dplyr", "ggplot2", "mgcv", "patchwork", "rlang", "scater", "viridis"]
7169 },
7170 "bluster": {
7171 "name": "bluster",
7172 "version": "1.20.0",
7173 "sha256": "0ghzvj8s4hy88w4rgx817zn0ipxga31q6gj713pvjlfj6bgqvjs4",
7174 "depends": ["BiocNeighbors", "BiocParallel", "Matrix", "Rcpp", "S4Vectors", "assorthead", "cluster", "igraph"]
7175 },
7176 "bnbc": {
7177 "name": "bnbc",
7178 "version": "1.32.0",
7179 "sha256": "1p79j6a499ly3i2wil1fh6ipi2sbfhihrnajq3br0idgjyizqjsw",
7180 "depends": ["BiocGenerics", "EBImage", "GenomicRanges", "HiCBricks", "IRanges", "Rcpp", "S4Vectors", "Seqinfo", "SummarizedExperiment", "data_table", "matrixStats", "preprocessCore", "rhdf5", "sva"]
7181 },
7182 "bnem": {
7183 "name": "bnem",
7184 "version": "1.18.0",
7185 "sha256": "1hcd98zrvgcj19k546j0kjbivjsndc4bryrj9aczkw7f7mbgzpjz",
7186 "depends": ["Biobase", "CellNOptR", "RColorBrewer", "Rgraphviz", "affy", "binom", "cluster", "epiNEM", "flexclust", "graph", "limma", "matrixStats", "mnem", "rmarkdown", "snowfall", "sva", "vsn"]
7187 },
7188 "borealis": {
7189 "name": "borealis",
7190 "version": "1.14.0",
7191 "sha256": "018srka1f5c4yv644fq66bgj19x1mmyq97xpgg2bzp0j787721lw",
7192 "depends": ["Biobase", "DSS", "GenomicRanges", "R_utils", "bsseq", "cowplot", "doParallel", "dplyr", "foreach", "gamlss", "gamlss_dist", "ggplot2", "plyr", "purrr", "rlang", "snow"]
7193 },
7194 "breakpointR": {
7195 "name": "breakpointR",
7196 "version": "1.28.0",
7197 "sha256": "0wmrbm1qssv9njxs3m40kag1v0xf1zrskb38vlzb2q3669gpjr9q",
7198 "depends": ["BiocGenerics", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "breakpointRdata", "cowplot", "doParallel", "foreach", "ggplot2", "gtools"]
7199 },
7200 "brendaDb": {
7201 "name": "brendaDb",
7202 "version": "1.24.0",
7203 "sha256": "0snaip1b7p3b7bjzcjxmwf6ivi2lv5ksawamkksfk5h4g4vpfpa5",
7204 "depends": ["BiocFileCache", "BiocParallel", "Rcpp", "crayon", "dplyr", "magrittr", "purrr", "rappdirs", "rlang", "stringr", "tibble", "tidyr"]
7205 },
7206 "bsseq": {
7207 "name": "bsseq",
7208 "version": "1.46.0",
7209 "sha256": "1x2d17s0dv0wmn4lw5xmq8wjbly4llaayiz47f5l115il577l4ig",
7210 "depends": ["BSgenome", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DelayedArray", "DelayedMatrixStats", "GenomicRanges", "HDF5Array", "IRanges", "R_utils", "Rcpp", "S4Vectors", "Seqinfo", "SummarizedExperiment", "assorthead", "beachmat", "data_table", "gtools", "limma", "locfit", "permute", "rhdf5", "scales"]
7211 },
7212 "bugsigdbr": {
7213 "name": "bugsigdbr",
7214 "version": "1.16.0",
7215 "sha256": "13mfx8g4hd7d3rdmbfsr9a7z6zkggllaj48h6sbr6h989g86sxnp",
7216 "depends": ["BiocFileCache", "vroom"]
7217 },
7218 "bumphunter": {
7219 "name": "bumphunter",
7220 "version": "1.52.0",
7221 "sha256": "1rkfhpfi30jas48ldy6qxj1dkkij7bfq3d4xsbwzmm0ip3hdipaj",
7222 "depends": ["AnnotationDbi", "BiocGenerics", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "doRNG", "foreach", "iterators", "limma", "locfit", "matrixStats"]
7223 },
7224 "cBioPortalData": {
7225 "name": "cBioPortalData",
7226 "version": "2.21.5",
7227 "sha256": "0by3295xq1b6di5d50zqqv7sbn6g68sgdn2fvyxd4h88sr87ypb5",
7228 "depends": ["AnVIL", "BiocBaseUtils", "BiocFileCache", "GenomicRanges", "IRanges", "MultiAssayExperiment", "RTCGAToolbox", "RaggedExperiment", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TCGAutils", "digest", "dplyr", "httr", "readr", "tibble", "tidyr"]
7229 },
7230 "cTRAP": {
7231 "name": "cTRAP",
7232 "version": "1.28.0",
7233 "sha256": "0arpwi2iax013d3vzjxyjk7dwq99p63356wfhcilqk0mprf2sa7p",
7234 "depends": ["AnnotationDbi", "AnnotationHub", "DT", "R_utils", "binr", "cowplot", "data_table", "dplyr", "fastmatch", "fgsea", "ggplot2", "ggrepel", "highcharter", "htmltools", "httr", "limma", "pbapply", "purrr", "qs", "readxl", "reshape2", "rhdf5", "rlang", "scales", "shiny", "shinycssloaders", "tibble"]
7235 },
7236 "cageminer": {
7237 "name": "cageminer",
7238 "version": "1.16.0",
7239 "sha256": "02ah6mgsx0gchrjx5mfhypw5c9fww4xh4a7qpj8k1v25l200q43f",
7240 "depends": ["BioNERO", "GenomeInfoDb", "GenomicRanges", "IRanges", "ggbio", "ggplot2", "ggtext", "reshape2", "rlang"]
7241 },
7242 "calm": {
7243 "name": "calm",
7244 "version": "1.24.0",
7245 "sha256": "1p045a9phzkskllqmgk34c9bd2gcyvndzhp2vrna1qjz4dmwk93a",
7246 "depends": ["mgcv"]
7247 },
7248 "canceR": {
7249 "name": "canceR",
7250 "version": "1.44.0",
7251 "sha256": "0famd2k80mm58vswkvkz8bv29cp23a58m0fbb3jcilyp7d0k6v97",
7252 "depends": ["Biobase", "Formula", "GSEABase", "RUnit", "R_methodsS3", "R_oo", "cBioPortalData", "circlize", "dplyr", "geNetClassifier", "phenoTest", "plyr", "rpart", "survival", "tidyr", "tkrplot"]
7253 },
7254 "cancerclass": {
7255 "name": "cancerclass",
7256 "version": "1.54.0",
7257 "sha256": "0mj4s2yykywmwmlr8fi94r0v1aql68xpsbqgz2yh47fpvhair2kh",
7258 "depends": ["Biobase", "binom"]
7259 },
7260 "cardelino": {
7261 "name": "cardelino",
7262 "version": "1.12.0",
7263 "sha256": "1r1dd9wmi8amv1825j74kmqjnlhxvcdqaq1g7pf48wa3qxyrylip",
7264 "depends": ["GenomeInfoDb", "GenomicRanges", "Matrix", "S4Vectors", "VariantAnnotation", "combinat", "ggplot2", "ggtree", "matrixStats", "pheatmap", "snpStats", "vcfR"]
7265 },
7266 "casper": {
7267 "name": "casper",
7268 "version": "2.44.0",
7269 "sha256": "0kz6h9ixs3lij8d0zvf3243zczqg3wbi75xq4la3apsb73nlail2",
7270 "depends": ["Biobase", "BiocGenerics", "EBarrays", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "VGAM", "coda", "gaga", "gtools", "limma", "mgcv", "rtracklayer", "sqldf", "survival"]
7271 },
7272 "categoryCompare": {
7273 "name": "categoryCompare",
7274 "version": "1.54.0",
7275 "sha256": "055g2qj7yjs9hxjaig3ja9v9p8is2swgxwd1ps6my1vgyk361bcv",
7276 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "Category", "GOstats", "GSEABase", "RCy3", "annotate", "colorspace", "graph", "hwriter"]
7277 },
7278 "cbaf": {
7279 "name": "cbaf",
7280 "version": "1.32.0",
7281 "sha256": "15dzdga77mz77bjn152cw87gn84k05ijmnnxkxab25y4mdll3p1f",
7282 "depends": ["BiocFileCache", "RColorBrewer", "cBioPortalData", "genefilter", "gplots", "openxlsx", "zip"]
7283 },
7284 "cbpManager": {
7285 "name": "cbpManager",
7286 "version": "1.18.0",
7287 "sha256": "05qihizwrz0yaqcg34mdx135ysr7kys7hnhv6xdm60ghh2l68iqd",
7288 "depends": ["DT", "basilisk", "dplyr", "htmltools", "jsonlite", "magrittr", "markdown", "plyr", "rapportools", "reticulate", "rintrojs", "rlang", "shiny", "shinyBS", "shinycssloaders", "shinydashboard", "vroom"]
7289 },
7290 "ccImpute": {
7291 "name": "ccImpute",
7292 "version": "1.12.0",
7293 "sha256": "09g11pbrni0ifc756h393jm0bfivnx8n72iq8rz1k1sjw009xdq0",
7294 "depends": ["BiocParallel", "Matrix", "Rcpp", "RcppEigen", "SingleCellExperiment", "SummarizedExperiment", "irlba", "sparseMatrixStats"]
7295 },
7296 "ccfindR": {
7297 "name": "ccfindR",
7298 "version": "1.30.0",
7299 "sha256": "1rxfy8dnxg047v65d27k30gnixbhzfq0fg7fx5y5adljnj352i4b",
7300 "depends": ["Matrix", "RColorBrewer", "Rcpp", "RcppEigen", "Rdpack", "Rmpi", "Rtsne", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "ape", "gtools", "irlba"]
7301 },
7302 "ccrepe": {
7303 "name": "ccrepe",
7304 "version": "1.46.0",
7305 "sha256": "02i4izk0p7h1v96fmhjhwd7z8m2kql3akk620qv2z904ndlg8hdl",
7306 "depends": ["infotheo"]
7307 },
7308 "ceRNAnetsim": {
7309 "name": "ceRNAnetsim",
7310 "version": "1.22.0",
7311 "sha256": "149ykxsgfhw5xmdql6nba3damxi5m8ybbpc9a8jybqxbwhsnc3ab",
7312 "depends": ["dplyr", "furrr", "future", "ggplot2", "ggraph", "igraph", "purrr", "rlang", "tibble", "tidygraph", "tidyr"]
7313 },
7314 "celaref": {
7315 "name": "celaref",
7316 "version": "1.28.0",
7317 "sha256": "1xlkqc5880rrryrbpl4fnh5vh171imf8jlc8lxz5aygvl3hhpgvy",
7318 "depends": ["BiocGenerics", "DelayedArray", "MAST", "Matrix", "S4Vectors", "SummarizedExperiment", "dplyr", "ggplot2", "magrittr", "readr", "rlang", "tibble"]
7319 },
7320 "celda": {
7321 "name": "celda",
7322 "version": "1.26.0",
7323 "sha256": "1qq52kpzq20whx9v0b6l29hkghrn5m3yilhc0gz23m2cafr0nni5",
7324 "depends": ["ComplexHeatmap", "DelayedArray", "MCMCprecision", "Matrix", "RColorBrewer", "Rcpp", "RcppEigen", "Rtsne", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "circlize", "data_table", "dbscan", "dendextend", "digest", "doParallel", "enrichR", "foreach", "ggdendro", "ggplot2", "ggrepel", "gridExtra", "gtable", "matrixStats", "pROC", "plyr", "reshape2", "scales", "scater", "scran", "stringr", "uwot", "withr"]
7325 },
7326 "cellbaseR": {
7327 "name": "cellbaseR",
7328 "version": "1.34.0",
7329 "sha256": "1d7p7waavsxgqarj9jhyjara86v6xr3ipdshhldhvk70r5lm0nan",
7330 "depends": ["BiocParallel", "R_utils", "Rsamtools", "data_table", "doParallel", "foreach", "httr", "jsonlite", "pbapply", "tidyr"]
7331 },
7332 "cellity": {
7333 "name": "cellity",
7334 "version": "1.38.0",
7335 "sha256": "0hddivf2yf670bvs41fd12nzrs0lxqsw8fcxi5jrp7awzk3v777r",
7336 "depends": ["AnnotationDbi", "e1071", "ggplot2", "mvoutlier", "org_Hs_eg_db", "org_Mm_eg_db", "robustbase", "topGO"]
7337 },
7338 "cellmig": {
7339 "name": "cellmig",
7340 "version": "1.0.0",
7341 "sha256": "1v617x19v3a8kyy541awpfah35v7qxkhdf9by0fhrsk7igkmgdl6",
7342 "depends": ["BH", "Rcpp", "RcppEigen", "RcppParallel", "StanHeaders", "ape", "ggforce", "ggplot2", "ggtree", "patchwork", "reshape2", "rstan", "rstantools", "scales"]
7343 },
7344 "cellmigRation": {
7345 "name": "cellmigRation",
7346 "version": "1.18.0",
7347 "sha256": "1j0bf7l780j3z6nb49g3b8yycifp1wym8zb7iy3dfx5d7i297aaz",
7348 "depends": ["FME", "FactoMineR", "Hmisc", "SpatialTools", "doParallel", "foreach", "matrixStats", "reshape2", "sp", "tiff", "vioplot"]
7349 },
7350 "cellscape": {
7351 "name": "cellscape",
7352 "version": "1.34.0",
7353 "sha256": "1lnyqhjw78vhimwsch94qxnam3wq77x2apgr054ir9rarh38i5lj",
7354 "depends": ["dplyr", "gtools", "htmlwidgets", "jsonlite", "reshape2", "stringr"]
7355 },
7356 "cellxgenedp": {
7357 "name": "cellxgenedp",
7358 "version": "1.14.0",
7359 "sha256": "13pab6l4r3sc47vh8mf7f2rd4ym9cjvagics29yfxpb3zdql66h6",
7360 "depends": ["DT", "cli", "curl", "dplyr", "httr", "rjsoncons", "shiny"]
7361 },
7362 "censcyt": {
7363 "name": "censcyt",
7364 "version": "1.18.0",
7365 "sha256": "08kmpqwq3aswpkmg0n5720b6v0xwp2x8g353mwg4hd9cywjfvhhd",
7366 "depends": ["BiocParallel", "MASS", "S4Vectors", "SummarizedExperiment", "broom_mixed", "diffcyt", "dirmult", "dplyr", "edgeR", "fitdistrplus", "lme4", "magrittr", "mice", "multcomp", "purrr", "rlang", "stringr", "survival", "tibble", "tidyr"]
7367 },
7368 "cfDNAPro": {
7369 "name": "cfDNAPro",
7370 "version": "1.16.0",
7371 "sha256": "16387in3j9i6q059l1kh64lj3kh3wd23ia2x80dm7azdlykr616l",
7372 "depends": ["BSgenome_Hsapiens_NCBI_GRCh38", "BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Hsapiens_UCSC_hg38", "BiocGenerics", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "dplyr", "ggplot2", "magrittr", "plyranges", "quantmod", "rlang", "stringr", "tibble"]
7373 },
7374 "cfTools": {
7375 "name": "cfTools",
7376 "version": "1.10.0",
7377 "sha256": "1d9slykcph6xkbni1msnn9vmsh7rl6xddpbmllf0bv2bbxmhh6wc",
7378 "depends": ["BH", "GenomicRanges", "R_utils", "Rcpp", "basilisk", "cfToolsData"]
7379 },
7380 "cfdnakit": {
7381 "name": "cfdnakit",
7382 "version": "1.8.0",
7383 "sha256": "0qmqmxgvjfv35xaliyr63visqkhjny8nlqbrncpmj7w6p2b1ixi5",
7384 "depends": ["Biobase", "GenomeInfoDb", "GenomicRanges", "IRanges", "PSCBS", "QDNAseq", "Rsamtools", "S4Vectors", "dplyr", "ggplot2", "magrittr", "rlang"]
7385 },
7386 "cghMCR": {
7387 "name": "cghMCR",
7388 "version": "1.68.0",
7389 "sha256": "1cwpi4d904s7g0rh35fqqg4d9xg5wn3h776dh4kkf94pbrrlfprc",
7390 "depends": ["BiocGenerics", "CNTools", "DNAcopy", "limma"]
7391 },
7392 "chevreulPlot": {
7393 "name": "chevreulPlot",
7394 "version": "1.2.0",
7395 "sha256": "0hmn44ljkj26is2dbr9f412pcawi95v3n66mq7rkzqqgq6ndryni",
7396 "depends": ["ComplexHeatmap", "EnsDb_Hsapiens_v86", "S4Vectors", "SingleCellExperiment", "chevreulProcess", "circlize", "cluster", "clustree", "dplyr", "forcats", "fs", "ggplot2", "patchwork", "plotly", "purrr", "scales", "scater", "scran", "scuttle", "stringr", "tibble", "tidyr", "tidyselect", "wiggleplotr"]
7397 },
7398 "chevreulProcess": {
7399 "name": "chevreulProcess",
7400 "version": "1.2.0",
7401 "sha256": "14h9a96skiricsdv05gcyng8drynii18s1c3ffg7py8hzkw2wxqa",
7402 "depends": ["DBI", "EnsDb_Hsapiens_v86", "GenomicFeatures", "RSQLite", "S4Vectors", "SingleCellExperiment", "batchelor", "bluster", "circlize", "cluster", "dplyr", "ensembldb", "fs", "glue", "megadepth", "purrr", "scater", "scran", "scuttle", "stringr", "tibble", "tidyr", "tidyselect"]
7403 },
7404 "chihaya": {
7405 "name": "chihaya",
7406 "version": "1.10.0",
7407 "sha256": "1wc4bj9vsp6h06b0rwsswzsv4zx81j17pnx77hjigbcd03j9xv7l",
7408 "depends": ["DelayedArray", "HDF5Array", "Matrix", "Rcpp", "Rhdf5lib", "rhdf5"]
7409 },
7410 "chimeraviz": {
7411 "name": "chimeraviz",
7412 "version": "1.36.0",
7413 "sha256": "12x3q9zm25qrpm4z4vlfmp8wynbxcmdw2fp486m8ys7fmdzpl0lk",
7414 "depends": ["AnnotationDbi", "AnnotationFilter", "BiocStyle", "Biostrings", "DT", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "Gviz", "IRanges", "RCircos", "RColorBrewer", "Rgraphviz", "Rsamtools", "S4Vectors", "checkmate", "data_table", "dplyr", "ensembldb", "graph", "gtools", "magick", "org_Hs_eg_db", "org_Mm_eg_db", "plyr", "rmarkdown"]
7415 },
7416 "chipenrich": {
7417 "name": "chipenrich",
7418 "version": "2.34.0",
7419 "sha256": "0d3jda48r8q9w8pplisfbjvilyvfkm7q7bhylqzrc6v0zahlx27l",
7420 "depends": ["AnnotationDbi", "BiocGenerics", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "Seqinfo", "chipenrich_data", "lattice", "latticeExtra", "mgcv", "org_Dm_eg_db", "org_Dr_eg_db", "org_Hs_eg_db", "org_Mm_eg_db", "org_Rn_eg_db", "plyr", "rms", "rtracklayer", "stringr"]
7421 },
7422 "chipseq": {
7423 "name": "chipseq",
7424 "version": "1.60.0",
7425 "sha256": "15vxg462svh33460xfas5kxc96nnlkprq442gplmspsiwb0jhjf3",
7426 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "ShortRead", "lattice"]
7427 },
7428 "chopsticks": {
7429 "name": "chopsticks",
7430 "version": "1.76.0",
7431 "sha256": "120b9c8g5mm2fxf97xcmgp75x8qmnw01ih53ny6a4940wgji07as",
7432 "depends": ["survival"]
7433 },
7434 "chromDraw": {
7435 "name": "chromDraw",
7436 "version": "2.40.0",
7437 "sha256": "09rpbaz2jds6c3h3mm50cjcdr8za8x5127pvr6mf7ly6g7qyqinp",
7438 "depends": ["GenomicRanges", "Rcpp"]
7439 },
7440 "chromPlot": {
7441 "name": "chromPlot",
7442 "version": "1.38.0",
7443 "sha256": "0hq76qm6r5c5cpcb9zzbxfq4yhhs2fxdxhsyvglz9nhnris4c104",
7444 "depends": ["GenomicRanges", "biomaRt"]
7445 },
7446 "chromVAR": {
7447 "name": "chromVAR",
7448 "version": "1.32.0",
7449 "sha256": "13yb4ykcapn0i2w1aav3pm3k8yyhfqkibrabd3fzab5gn9kbwwm9",
7450 "depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "DT", "GenomicRanges", "IRanges", "Matrix", "RColorBrewer", "Rcpp", "RcppArmadillo", "Rsamtools", "Rtsne", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TFBSTools", "ggplot2", "miniUI", "nabor", "plotly", "shiny"]
7451 },
7452 "cicero": {
7453 "name": "cicero",
7454 "version": "1.28.0",
7455 "sha256": "1ibxynw77a8mqv9av7z828wcazjpm4sfp83hd412f2rmgkls895x",
7456 "depends": ["Biobase", "BiocGenerics", "FNN", "GenomicRanges", "Gviz", "IRanges", "Matrix", "S4Vectors", "VGAM", "assertthat", "data_table", "dplyr", "ggplot2", "glasso", "igraph", "monocle", "plyr", "reshape2", "stringi", "stringr", "tibble", "tidyr"]
7457 },
7458 "cigarillo": {
7459 "name": "cigarillo",
7460 "version": "1.0.0",
7461 "sha256": "07ayin3ydibhbv5qxi1bapdw2yf759k3azj57kqvmdpqsdwz1nm9",
7462 "depends": ["BiocGenerics", "Biostrings", "IRanges", "S4Vectors"]
7463 },
7464 "circRNAprofiler": {
7465 "name": "circRNAprofiler",
7466 "version": "1.24.0",
7467 "sha256": "0pq3lxpwb25rkw2g5ykv8xiiq7zppp6r1zyvaykvg8jaaina0mx8",
7468 "depends": ["AnnotationHub", "BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "Biostrings", "DESeq2", "GenomeInfoDb", "GenomicRanges", "IRanges", "R_utils", "S4Vectors", "dplyr", "edgeR", "ggplot2", "gwascat", "magrittr", "readr", "reshape2", "rlang", "rtracklayer", "seqinr", "stringi", "stringr", "universalmotif"]
7469 },
7470 "cleanUpdTSeq": {
7471 "name": "cleanUpdTSeq",
7472 "version": "1.48.0",
7473 "sha256": "1816qqksabhyjzn5kprqmzsqjyq39rgi5kmbylr38ml4idsgw050",
7474 "depends": ["BSgenome", "BSgenome_Drerio_UCSC_danRer7", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "e1071", "seqinr", "stringr"]
7475 },
7476 "cleaver": {
7477 "name": "cleaver",
7478 "version": "1.48.0",
7479 "sha256": "1xi1n9k40cy7fmizdhjb4cbplpsagqfzfsk26k4zfr6wwwgjphs4",
7480 "depends": ["Biostrings", "IRanges", "S4Vectors"]
7481 },
7482 "clevRvis": {
7483 "name": "clevRvis",
7484 "version": "1.10.0",
7485 "sha256": "09wlklwpz1bhmm1ca6nxx0a3mzmdxnasn960mnksc7srcpqs4m64",
7486 "depends": ["DT", "R_utils", "colorspace", "colourpicker", "cowplot", "dplyr", "ggiraph", "ggnewscale", "ggplot2", "ggraph", "htmlwidgets", "igraph", "magrittr", "patchwork", "purrr", "readr", "readxl", "shiny", "shinyWidgets", "shinycssloaders", "shinydashboard", "shinyhelper", "tibble"]
7487 },
7488 "cliProfiler": {
7489 "name": "cliProfiler",
7490 "version": "1.16.0",
7491 "sha256": "07pzyhwib8mz8bykkygrspyss4ljckj39js60fwig1y0li45b783",
7492 "depends": ["BSgenome", "Biostrings", "GenomicRanges", "S4Vectors", "dplyr", "ggplot2", "rtracklayer"]
7493 },
7494 "clippda": {
7495 "name": "clippda",
7496 "version": "1.60.0",
7497 "sha256": "10607r90flb2hxfl38mxsrjbgwm551pm7hy8phnffm8g8np0nksl",
7498 "depends": ["Biobase", "lattice", "limma", "rgl", "scatterplot3d", "statmod"]
7499 },
7500 "clipper": {
7501 "name": "clipper",
7502 "version": "1.50.0",
7503 "sha256": "0ijw8zy19z8l3b4bz0xa412frsmw6jkfjrqbw2yj7cx6sk73hp6y",
7504 "depends": ["Biobase", "KEGGgraph", "Matrix", "Rcpp", "corpcor", "gRbase", "graph", "igraph", "qpgraph"]
7505 },
7506 "cliqueMS": {
7507 "name": "cliqueMS",
7508 "version": "1.24.0",
7509 "sha256": "03j3xr5bmgs34zb2wq279mjkv4grz6ix9m3azg5d0fmxlndsqqb5",
7510 "depends": ["BH", "MSnbase", "Rcpp", "RcppArmadillo", "coop", "igraph", "matrixStats", "slam", "xcms"]
7511 },
7512 "clst": {
7513 "name": "clst",
7514 "version": "1.58.0",
7515 "sha256": "0f1l5fgvbqw8mamllqdy2v903vjdd3bpxgprr9ds4zviapwcx5a2",
7516 "depends": ["ROC", "lattice"]
7517 },
7518 "clstutils": {
7519 "name": "clstutils",
7520 "version": "1.58.0",
7521 "sha256": "0m9wyrndnhq959hqjk6z7cvzr9d50rw2nrzzdndssyjpfhnnkjfi",
7522 "depends": ["RSQLite", "ape", "clst", "lattice", "rjson"]
7523 },
7524 "clustComp": {
7525 "name": "clustComp",
7526 "version": "1.38.0",
7527 "sha256": "094wp5bf1f521jd7f0pc2w4fvry9vj3w0fx5pr8d9hqph8l60522",
7528 "depends": ["sm"]
7529 },
7530 "clustSIGNAL": {
7531 "name": "clustSIGNAL",
7532 "version": "1.2.0",
7533 "sha256": "1mydppyp4l5imhmbn833fr94imipcbwlkbx4i2v9r3g1c1gbgf2s",
7534 "depends": ["BiocNeighbors", "BiocParallel", "Matrix", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "bluster", "harmony", "reshape2", "scater"]
7535 },
7536 "clusterExperiment": {
7537 "name": "clusterExperiment",
7538 "version": "2.30.0",
7539 "sha256": "0lcahnfcld24xjj0fg9xmwapm3pnnf02sgf9gmvp5nkp6pjhmf5p",
7540 "depends": ["BiocGenerics", "BiocSingular", "DelayedArray", "HDF5Array", "Matrix", "NMF", "RColorBrewer", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "ape", "cluster", "edgeR", "kernlab", "limma", "locfdr", "matrixStats", "mbkmeans", "phylobase", "pracma", "scales", "stringr", "zinbwave"]
7541 },
7542 "clusterProfiler": {
7543 "name": "clusterProfiler",
7544 "version": "4.18.0",
7545 "sha256": "1sqxizm5sbjhjyg5kxbb1k1qv1pmldkfa232h04w4z1k4a1isn0l",
7546 "depends": ["AnnotationDbi", "DOSE", "GOSemSim", "GO_db", "dplyr", "enrichplot", "gson", "httr", "igraph", "magrittr", "plyr", "qvalue", "rlang", "tidyr", "yulab_utils"]
7547 },
7548 "clusterSeq": {
7549 "name": "clusterSeq",
7550 "version": "1.34.0",
7551 "sha256": "1ny2ypmqgwqwqa857bdh19ymizcy6ilk2fzsdbvqm7rh0zwkqnij",
7552 "depends": ["BiocGenerics", "BiocParallel", "baySeq"]
7553 },
7554 "clusterStab": {
7555 "name": "clusterStab",
7556 "version": "1.82.0",
7557 "sha256": "128ifhm27d0rrj7m6i0ycflv044c9inha3kic4gvyn5ggkmy4fmv",
7558 "depends": ["Biobase"]
7559 },
7560 "clustifyr": {
7561 "name": "clustifyr",
7562 "version": "1.22.0",
7563 "sha256": "0i8ck3wf61d92fgxg1b3p27xklilibkqz3qavdnmfks2xwzfbs5w",
7564 "depends": ["Matrix", "S4Vectors", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "cowplot", "dplyr", "entropy", "fgsea", "ggplot2", "httr", "matrixStats", "proxy", "rlang", "scales", "stringr", "tibble", "tidyr"]
7565 },
7566 "cmapR": {
7567 "name": "cmapR",
7568 "version": "1.22.0",
7569 "sha256": "1c8mhspf33byz9mj3zmgf9k2d02g2dv41ick4wka4ghm1x1iygnc",
7570 "depends": ["SummarizedExperiment", "data_table", "flowCore", "matrixStats", "rhdf5"]
7571 },
7572 "cn_farms": {
7573 "name": "cn.farms",
7574 "version": "1.58.0",
7575 "sha256": "1jm7zwkdhcbsr1i5zc1s35ki0ri3y5mqnpng07h1jvqg9kd15w5f",
7576 "depends": ["Biobase", "DBI", "DNAcopy", "affxparser", "ff", "lattice", "oligo", "oligoClasses", "preprocessCore", "snow"]
7577 },
7578 "cn_mops": {
7579 "name": "cn.mops",
7580 "version": "1.56.0",
7581 "sha256": "14dihwcwc02p8kcxwisnpq5sv7km5bpyb68v1pnac0pgjxlccn5q",
7582 "depends": ["Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo"]
7583 },
7584 "cnvGSA": {
7585 "name": "cnvGSA",
7586 "version": "1.54.0",
7587 "sha256": "0dmrr4hy1h1v7fa4v2y4wg1i2cf3jq0wldybb0jy0p8q8059gwg8",
7588 "depends": ["GenomicRanges", "brglm", "doParallel", "foreach", "splitstackshape"]
7589 },
7590 "coGPS": {
7591 "name": "coGPS",
7592 "version": "1.54.0",
7593 "sha256": "0d8611n0ya3b7dnbilakkjjw07mnm0f5vbr58q1kbmvx9v4i0cfz",
7594 "depends": []
7595 },
7596 "coMethDMR": {
7597 "name": "coMethDMR",
7598 "version": "1.14.0",
7599 "sha256": "1k0dvlxafam228fbmcs29r2x5zflwwd2ws8q3kbfmjgy2n334159",
7600 "depends": ["AnnotationHub", "BiocParallel", "ExperimentHub", "GenomicRanges", "IRanges", "bumphunter", "lmerTest"]
7601 },
7602 "coRdon": {
7603 "name": "coRdon",
7604 "version": "1.28.0",
7605 "sha256": "0vkg3pch29mkab684mmbbrvpk2w1lkj4kfda75i50wy10x706cnv",
7606 "depends": ["Biobase", "Biostrings", "data_table", "dplyr", "ggplot2", "purrr", "stringr"]
7607 },
7608 "codelink": {
7609 "name": "codelink",
7610 "version": "1.78.0",
7611 "sha256": "01mkh2mvgaiq760ga379m9s0wapv0g8bkmjm0c1wxc4bay6hgbph",
7612 "depends": ["Biobase", "BiocGenerics", "annotate", "limma"]
7613 },
7614 "cogena": {
7615 "name": "cogena",
7616 "version": "1.44.0",
7617 "sha256": "1klqysglaz37lyy3aj99fpddw9nz9k06473qg6lhvjrpfgbr1chf",
7618 "depends": ["Biobase", "amap", "apcluster", "biwt", "class", "cluster", "corrplot", "devtools", "doParallel", "dplyr", "fastcluster", "foreach", "ggplot2", "gplots", "kohonen", "mclust", "reshape2", "stringr", "tibble", "tidyr"]
7619 },
7620 "cogeqc": {
7621 "name": "cogeqc",
7622 "version": "1.14.0",
7623 "sha256": "19fyg5na5g30vp62ki8hxb0pg24k6dzd08xan7f7biqh0ygc2ig5",
7624 "depends": ["Biostrings", "ggbeeswarm", "ggplot2", "ggtree", "igraph", "jsonlite", "patchwork", "reshape2", "rlang", "scales"]
7625 },
7626 "cola": {
7627 "name": "cola",
7628 "version": "2.16.0",
7629 "sha256": "1h6w44nbach8wvnd3qjs107fmcqn3wzpqv587c651xqcjrq6d1w7",
7630 "depends": ["BiocGenerics", "ComplexHeatmap", "GetoptLong", "GlobalOptions", "RColorBrewer", "Rcpp", "brew", "circlize", "clue", "cluster", "crayon", "digest", "doParallel", "doRNG", "eulerr", "foreach", "httr", "impute", "irlba", "knitr", "markdown", "matrixStats", "mclust", "microbenchmark", "png", "skmeans", "xml2"]
7631 },
7632 "combi": {
7633 "name": "combi",
7634 "version": "1.22.0",
7635 "sha256": "1miy20axfip09v4ma5v70knv1h118w0rmdssqbzam2dxbdilipcp",
7636 "depends": ["BB", "Biobase", "DBI", "Matrix", "SummarizedExperiment", "alabama", "cobs", "ggplot2", "limma", "nleqslv", "phyloseq", "reshape2", "tensor", "vegan"]
7637 },
7638 "compEpiTools": {
7639 "name": "compEpiTools",
7640 "version": "1.44.0",
7641 "sha256": "0j35bq78pz79413149j0j4g4mz05kmyzcbpg6wgq04c9xyjnkyzv",
7642 "depends": ["AnnotationDbi", "BiocGenerics", "Biostrings", "GO_db", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "XVector", "gplots", "methylPipe", "topGO"]
7643 },
7644 "compSPOT": {
7645 "name": "compSPOT",
7646 "version": "1.8.0",
7647 "sha256": "1ab63jhw8la182irpygpzdasn71d24y1bwabn834h3sw1h0jnxg2",
7648 "depends": ["data_table", "ggplot2", "ggpubr", "gridExtra", "magrittr", "plotly"]
7649 },
7650 "compcodeR": {
7651 "name": "compcodeR",
7652 "version": "1.46.0",
7653 "sha256": "16i81f8i9g1f6cwk96idzr377p45s23s1d018x8aiacs92c1kfxv",
7654 "depends": ["KernSmooth", "MASS", "ROCR", "ape", "caTools", "edgeR", "ggplot2", "gplots", "gtools", "knitr", "lattice", "limma", "markdown", "matrixStats", "modeest", "phylolm", "rmarkdown", "shiny", "shinydashboard", "sm", "stringr", "vioplot"]
7655 },
7656 "concordexR": {
7657 "name": "concordexR",
7658 "version": "1.10.0",
7659 "sha256": "03xrjkgsqcd9p7029vlif5bgcbpf5yzf03dg3cni8rf9a4sgrh9y",
7660 "depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "DelayedArray", "Matrix", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "bluster", "cli", "purrr", "rlang", "sparseMatrixStats"]
7661 },
7662 "condiments": {
7663 "name": "condiments",
7664 "version": "1.18.0",
7665 "sha256": "1rld3jllr8iax3ivb20cg5syzvci75g53r8g86ac76r95sqbsdi4",
7666 "depends": ["BiocParallel", "Ecume", "RANN", "SingleCellExperiment", "SummarizedExperiment", "TrajectoryUtils", "distinct", "dplyr", "igraph", "magrittr", "matrixStats", "mgcv", "pbapply", "slingshot"]
7667 },
7668 "consICA": {
7669 "name": "consICA",
7670 "version": "2.8.0",
7671 "sha256": "0l54a4iyyykwy1zg8mjk87swjbsfjcs4jbyqicpci377wa2fcpvj",
7672 "depends": ["BiocParallel", "GO_db", "Rfast", "SummarizedExperiment", "fastICA", "ggplot2", "graph", "org_Hs_eg_db", "pheatmap", "sm", "survival", "topGO"]
7673 },
7674 "consensus": {
7675 "name": "consensus",
7676 "version": "1.28.0",
7677 "sha256": "14wzl0vpgxf34ab6f3ymrhy19rvn9s54zx9d4fqs4wsmzgw6r4dl",
7678 "depends": ["RColorBrewer", "gplots", "matrixStats"]
7679 },
7680 "consensusDE": {
7681 "name": "consensusDE",
7682 "version": "1.28.0",
7683 "sha256": "1rflkdj8kkb0vhhhlyfirpvkqanbxgfjqwi7diyr35rhkfynra4y",
7684 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DESeq2", "EDASeq", "EnsDb_Hsapiens_v86", "GenomicAlignments", "GenomicFeatures", "RColorBrewer", "RUVSeq", "Rsamtools", "S4Vectors", "SummarizedExperiment", "TxDb_Dmelanogaster_UCSC_dm3_ensGene", "airway", "data_table", "dendextend", "edgeR", "ensembldb", "limma", "org_Hs_eg_db", "pcaMethods"]
7685 },
7686 "consensusOV": {
7687 "name": "consensusOV",
7688 "version": "1.32.0",
7689 "sha256": "08k9x2alip4yz8243fnakjrp7awv68d6wa4rlbnwbnsp3dx3pdqy",
7690 "depends": ["Biobase", "BiocParallel", "GSVA", "gdata", "genefu", "limma", "matrixStats", "randomForest"]
7691 },
7692 "consensusSeekeR": {
7693 "name": "consensusSeekeR",
7694 "version": "1.38.0",
7695 "sha256": "04s65v7cg7mzyarym98b2qn5gm61z96yq538cxvglc6bsgn0kglq",
7696 "depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "rtracklayer", "stringr"]
7697 },
7698 "conumee": {
7699 "name": "conumee",
7700 "version": "1.44.0",
7701 "sha256": "1v3xxc4z8d98gyhy4q3mbdi40mjw8k44r1328mqpikgyrn2l2rp5",
7702 "depends": ["DNAcopy", "GenomicRanges", "IRanges", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "IlluminaHumanMethylation450kmanifest", "IlluminaHumanMethylationEPICanno_ilm10b2_hg19", "IlluminaHumanMethylationEPICmanifest", "Seqinfo", "minfi", "rtracklayer"]
7703 },
7704 "convert": {
7705 "name": "convert",
7706 "version": "1.86.0",
7707 "sha256": "0y3932nyp4fdp4yjnzskg1cg4rsg0yc36cl5qqrj2svxh5d4s7b8",
7708 "depends": ["Biobase", "limma", "marray"]
7709 },
7710 "copa": {
7711 "name": "copa",
7712 "version": "1.78.0",
7713 "sha256": "08r4yx0jqlsm4h6c2aafdqlrm4pa4zyyrq8n5ygkf5j738sis7k1",
7714 "depends": ["Biobase"]
7715 },
7716 "corral": {
7717 "name": "corral",
7718 "version": "1.20.0",
7719 "sha256": "1njbbbnzlpp4m30ls2b6ff9fdwacjdnplh39115ix2lxnbcyg7np",
7720 "depends": ["Matrix", "MultiAssayExperiment", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "ggthemes", "gridExtra", "irlba", "pals", "reshape2", "transport"]
7721 },
7722 "coseq": {
7723 "name": "coseq",
7724 "version": "1.34.0",
7725 "sha256": "1mfndl9gzfpf8gv9qszaa8fy2ma9nmc1d1lb66j9y8v8xj9yk9vw",
7726 "depends": ["BiocParallel", "DESeq2", "HTSCluster", "HTSFilter", "Rmixmod", "S4Vectors", "SummarizedExperiment", "capushe", "compositions", "corrplot", "e1071", "edgeR", "ggplot2", "mvtnorm", "scales"]
7727 },
7728 "cosmiq": {
7729 "name": "cosmiq",
7730 "version": "1.44.0",
7731 "sha256": "1a70a6kl5k0a6l8ihhlyvjscr8srvgy2qljf8h8j5cm8pgiljyzl",
7732 "depends": ["MassSpecWavelet", "Rcpp", "faahKO", "pracma", "xcms"]
7733 },
7734 "cosmosR": {
7735 "name": "cosmosR",
7736 "version": "1.18.0",
7737 "sha256": "0l816srg6rgmb53ws45vwv3w8bvlyh8qcyz1q2drz9fg0w93645b",
7738 "depends": ["CARNIVAL", "GSEABase", "decoupleR", "dorothea", "dplyr", "igraph", "progress", "purrr", "rlang", "stringr", "visNetwork"]
7739 },
7740 "countsimQC": {
7741 "name": "countsimQC",
7742 "version": "1.28.0",
7743 "sha256": "0kbcl53mi9ch3d336xccw500bvghjy6lify8jpj7hmnx7bxhzzlq",
7744 "depends": ["DESeq2", "DT", "GenomeInfoDbData", "SummarizedExperiment", "caTools", "dplyr", "edgeR", "genefilter", "ggplot2", "ragg", "randtests", "rmarkdown", "tidyr"]
7745 },
7746 "covEB": {
7747 "name": "covEB",
7748 "version": "1.36.0",
7749 "sha256": "05glwld2sl0fcd1xgq20yc7pjs91i814ca5h2y2mjj55160l44ks",
7750 "depends": ["Biobase", "LaplacesDemon", "Matrix", "gsl", "igraph", "mvtnorm"]
7751 },
7752 "covRNA": {
7753 "name": "covRNA",
7754 "version": "1.36.0",
7755 "sha256": "1marp993hl0in7n68awlynpyczzbnwy6rgvilf5c52bqrp6hz40w",
7756 "depends": ["Biobase", "ade4", "genefilter"]
7757 },
7758 "cpvSNP": {
7759 "name": "cpvSNP",
7760 "version": "1.42.0",
7761 "sha256": "14vb6rj7z633dgkdlacv5zjmqdfphi4lhs2gfl41x34ppz8z8fy3",
7762 "depends": ["BiocParallel", "GSEABase", "GenomicFeatures", "corpcor", "ggplot2", "plyr"]
7763 },
7764 "cqn": {
7765 "name": "cqn",
7766 "version": "1.56.0",
7767 "sha256": "0aj0g8j4qgfvf421iyxq2w44jp3ryl3pcazrq1qslf48rgndf3kd",
7768 "depends": ["mclust", "nor1mix", "quantreg"]
7769 },
7770 "crisprBase": {
7771 "name": "crisprBase",
7772 "version": "1.14.0",
7773 "sha256": "17rimskjajjh55pybyk145ag52nqnpxfm1k88xm631j0r4bg51vf",
7774 "depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "stringr"]
7775 },
7776 "crisprBowtie": {
7777 "name": "crisprBowtie",
7778 "version": "1.14.0",
7779 "sha256": "1d1spfnfr3z3pqwq077j6pjind9j6vi82y2cmla0llfidb2gychv",
7780 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "Rbowtie", "Seqinfo", "crisprBase", "readr", "stringr"]
7781 },
7782 "crisprBwa": {
7783 "name": "crisprBwa",
7784 "version": "1.14.0",
7785 "sha256": "0mh9vixbmny6ifgc20381y7hajf1cda3scyvc0sbij0f70b83hcr",
7786 "depends": ["BSgenome", "BiocGenerics", "Rbwa", "Seqinfo", "crisprBase", "readr", "stringr"]
7787 },
7788 "crisprDesign": {
7789 "name": "crisprDesign",
7790 "version": "1.12.0",
7791 "sha256": "1cgqd6maqk2ij852n4ajpmc0kz36ap1614yi0q1x3rnyp427p2mp",
7792 "depends": ["AnnotationDbi", "BSgenome", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "MatrixGenerics", "S4Vectors", "Seqinfo", "VariantAnnotation", "crisprBase", "crisprBowtie", "crisprScore", "rtracklayer", "txdbmaker"]
7793 },
7794 "crisprScore": {
7795 "name": "crisprScore",
7796 "version": "1.14.0",
7797 "sha256": "1vzdiz0gz5fbrn0sak3gylaxgxavyb1qcx7ldg02mkvhd2mlbcx8",
7798 "depends": ["BiocGenerics", "Biostrings", "IRanges", "XVector", "basilisk", "crisprScoreData", "randomForest", "reticulate", "stringr"]
7799 },
7800 "crisprShiny": {
7801 "name": "crisprShiny",
7802 "version": "1.6.0",
7803 "sha256": "0vvdmfzvxva41fln61nd2l3chf9nvg9rcgrxwd8zgpm9gh84f9sb",
7804 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "DT", "S4Vectors", "Seqinfo", "crisprBase", "crisprDesign", "crisprScore", "crisprViz", "htmlwidgets", "pwalign", "shiny", "shinyBS", "shinyjs", "waiter"]
7805 },
7806 "crisprVerse": {
7807 "name": "crisprVerse",
7808 "version": "1.12.0",
7809 "sha256": "0z3d1sqhp15y0k1i0pkbzil60gn6hfsgm91yj6kci79axslia40l",
7810 "depends": ["BiocManager", "cli", "crisprBase", "crisprBowtie", "crisprDesign", "crisprScore", "crisprScoreData", "crisprViz", "rlang"]
7811 },
7812 "crisprViz": {
7813 "name": "crisprViz",
7814 "version": "1.12.0",
7815 "sha256": "1h3qnndqj1561fhayzmg734ixflwcgwrxv0a2k7zqwbgmbpq73qy",
7816 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "S4Vectors", "Seqinfo", "crisprBase", "crisprDesign", "txdbmaker"]
7817 },
7818 "crlmm": {
7819 "name": "crlmm",
7820 "version": "1.68.0",
7821 "sha256": "0fpyn0q596k7yb03y10dcrrbn8narngca97sj1dldij0l07100mw",
7822 "depends": ["Biobase", "BiocGenerics", "RcppEigen", "VGAM", "affyio", "beanplot", "ellipse", "ff", "foreach", "illuminaio", "lattice", "limma", "matrixStats", "mvtnorm", "oligoClasses", "preprocessCore"]
7823 },
7824 "crumblr": {
7825 "name": "crumblr",
7826 "version": "1.2.0",
7827 "sha256": "0fcwl1cql812z22h4qmr1piyaa10k38zgyba18nz9xf9cin385c2",
7828 "depends": ["MASS", "Rdpack", "Rfast", "SingleCellExperiment", "dplyr", "ggplot2", "ggtree", "tidytree", "variancePartition", "viridis"]
7829 },
7830 "crupR": {
7831 "name": "crupR",
7832 "version": "1.2.0",
7833 "sha256": "1ffvljw9q9m5405k9r9y409cnl64j897kwz3qmp2hcspmlq9mrs7",
7834 "depends": ["BiocParallel", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "TxDb_Mmusculus_UCSC_mm10_knownGene", "TxDb_Mmusculus_UCSC_mm9_knownGene", "bamsignals", "dplyr", "fs", "ggplot2", "magrittr", "matrixStats", "preprocessCore", "randomForest", "reshape2", "rtracklayer"]
7835 },
7836 "csaw": {
7837 "name": "csaw",
7838 "version": "1.44.0",
7839 "sha256": "10pk3lmjjmdyfp10fcnjbgfcxzlkd1fbjvh0h53ycq37p6sa49qb",
7840 "depends": ["BiocGenerics", "BiocParallel", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "Rhtslib", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "edgeR", "limma", "metapod"]
7841 },
7842 "csdR": {
7843 "name": "csdR",
7844 "version": "1.16.0",
7845 "sha256": "08ryx2jczvn7x9vl965adqpkhpbhbbc3rhj30mhrpgl45jbn7bka",
7846 "depends": ["Rcpp", "RhpcBLASctl", "WGCNA", "glue", "matrixStats"]
7847 },
7848 "ctc": {
7849 "name": "ctc",
7850 "version": "1.84.0",
7851 "sha256": "0h5lnb3bb88f6cbw38jn9rp6mynx8x7jzini2i9b8jw9myc2g6sx",
7852 "depends": ["amap"]
7853 },
7854 "ctsGE": {
7855 "name": "ctsGE",
7856 "version": "1.36.0",
7857 "sha256": "19qw1ww4nxplqnjyca8lcx1mqzfx9j664rnw6pprlpfsc5c5kg4c",
7858 "depends": ["ccaPP", "ggplot2", "limma", "reshape2", "shiny", "stringr"]
7859 },
7860 "customCMPdb": {
7861 "name": "customCMPdb",
7862 "version": "1.20.0",
7863 "sha256": "19s36a2j7gr7563rgblgwmdym28har666m28ci377bm6hb25aky8",
7864 "depends": ["AnnotationHub", "BiocFileCache", "ChemmineR", "RSQLite", "XML", "rappdirs"]
7865 },
7866 "cyanoFilter": {
7867 "name": "cyanoFilter",
7868 "version": "1.18.0",
7869 "sha256": "1m1lgg7gydzhk01vp0ddgsnn5rkdc47f0ippy5shh1l9mfj8fpah",
7870 "depends": ["Biobase", "GGally", "cytometree", "flowClust", "flowCore", "flowDensity", "ggplot2", "mrfDepth"]
7871 },
7872 "cycle": {
7873 "name": "cycle",
7874 "version": "1.64.0",
7875 "sha256": "1kaz4azy4gns1sww7n4wxa1kmlj8crk01lgvb15rlkcg38if9xma",
7876 "depends": ["Biobase", "Mfuzz"]
7877 },
7878 "cydar": {
7879 "name": "cydar",
7880 "version": "1.34.0",
7881 "sha256": "1wv5y5v4x3r84h1sh43zl841wxqnv9ffspr8nm6lypncpg99qdqw",
7882 "depends": ["Biobase", "BiocGenerics", "BiocNeighbors", "BiocParallel", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "flowCore", "shiny", "viridis"]
7883 },
7884 "cypress": {
7885 "name": "cypress",
7886 "version": "1.6.0",
7887 "sha256": "1f1kh5789rmpz3v35ldbgmjc39r5swlfhfciir4qcmkpi7gk23q4",
7888 "depends": ["BiocParallel", "DESeq2", "MASS", "PROPER", "RColorBrewer", "SummarizedExperiment", "TCA", "TOAST", "abind", "checkmate", "dplyr", "e1071", "edgeR", "mvtnorm", "preprocessCore", "rlang", "sirt", "tibble"]
7889 },
7890 "cytoKernel": {
7891 "name": "cytoKernel",
7892 "version": "1.16.0",
7893 "sha256": "1bazyy554vk2lwdvs612g2qjxgbnqgv0pyj0w1jyxlvh992x91nh",
7894 "depends": ["BiocParallel", "ComplexHeatmap", "Rcpp", "S4Vectors", "SummarizedExperiment", "ashr", "circlize", "data_table", "dplyr", "magrittr", "rlang"]
7895 },
7896 "cytoMEM": {
7897 "name": "cytoMEM",
7898 "version": "1.14.0",
7899 "sha256": "0h122sdnv5ivmb7awsz20cqi6k1wgb9v84mpd938igacnrv6d95a",
7900 "depends": ["flowCore", "gplots", "matrixStats"]
7901 },
7902 "cytolib": {
7903 "name": "cytolib",
7904 "version": "2.22.0",
7905 "sha256": "0qfh5srgdz01n66p9midq0051hl83dhzrkm0mvqlzs7ccm9xvb70",
7906 "depends": ["BH", "RProtoBufLib", "Rhdf5lib"]
7907 },
7908 "cytomapper": {
7909 "name": "cytomapper",
7910 "version": "1.22.0",
7911 "sha256": "1r68fbhwgnhplp3mmkcnga4kxwx8yj9c7vldwzxacpbihw4hxi92",
7912 "depends": ["BiocParallel", "DelayedArray", "EBImage", "HDF5Array", "RColorBrewer", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "ggbeeswarm", "ggplot2", "matrixStats", "nnls", "raster", "rhdf5", "shiny", "shinydashboard", "svgPanZoom", "svglite", "viridis"]
7913 },
7914 "cytoviewer": {
7915 "name": "cytoviewer",
7916 "version": "1.10.0",
7917 "sha256": "0lx73ldfyy2s3dkh13ph8pqs003fg07yjjfqn1m3l5z9hxgcnzmk",
7918 "depends": ["EBImage", "RColorBrewer", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "archive", "colourpicker", "cytomapper", "shiny", "shinycssloaders", "shinydashboard", "svgPanZoom", "svglite", "viridis"]
7919 },
7920 "dStruct": {
7921 "name": "dStruct",
7922 "version": "1.16.0",
7923 "sha256": "1mifjcjgihr4gsshx1197x5wq87xyqwl38dmkb2pqppvf3ma2ppm",
7924 "depends": ["IRanges", "S4Vectors", "ggplot2", "purrr", "reshape2", "rlang", "zoo"]
7925 },
7926 "daMA": {
7927 "name": "daMA",
7928 "version": "1.82.0",
7929 "sha256": "1klyw8f3b15160q9qdaqd6dp50l6xvwp1qgyphamwj6wh0y64xqg",
7930 "depends": ["MASS"]
7931 },
7932 "dada2": {
7933 "name": "dada2",
7934 "version": "1.38.0",
7935 "sha256": "0dcb37hv4wa6qz0f0xqmiw7n938lkm4dp9n9ardhwf633qcsn00d",
7936 "depends": ["BiocGenerics", "Biostrings", "IRanges", "Rcpp", "RcppParallel", "ShortRead", "XVector", "ggplot2", "reshape2"]
7937 },
7938 "dagLogo": {
7939 "name": "dagLogo",
7940 "version": "1.48.0",
7941 "sha256": "0cb5yqfjgy3qxnqbppavfifgmk2gys8yww200kqpgkkwn4wdw81k",
7942 "depends": ["BiocGenerics", "Biostrings", "UniProt_ws", "biomaRt", "httr", "motifStack", "pheatmap"]
7943 },
7944 "dar": {
7945 "name": "dar",
7946 "version": "1.6.0",
7947 "sha256": "0dxpd19pqkqxpb6r9fzb068a4saspzasx5i171inib4jq7r6yicx",
7948 "depends": ["ComplexHeatmap", "UpSetR", "cli", "crayon", "dplyr", "generics", "ggplot2", "glue", "gplots", "heatmaply", "magrittr", "mia", "phyloseq", "purrr", "readr", "rlang", "scales", "stringr", "tibble", "tidyr", "waldo"]
7949 },
7950 "dcGSA": {
7951 "name": "dcGSA",
7952 "version": "1.38.0",
7953 "sha256": "1dfnchgyiw7g424s24jshzcz56whdpxbzsapyw4bna0ldhd0m4mp",
7954 "depends": ["BiocParallel", "Matrix"]
7955 },
7956 "dcanr": {
7957 "name": "dcanr",
7958 "version": "1.26.0",
7959 "sha256": "0ga220j0na7biwrwxhzdjw0qv8624lcw05c5kagjd889rf27sizj",
7960 "depends": ["Matrix", "RColorBrewer", "circlize", "doRNG", "foreach", "igraph", "plyr", "reshape2", "stringr"]
7961 },
7962 "ddCt": {
7963 "name": "ddCt",
7964 "version": "1.66.0",
7965 "sha256": "0xl3034xixqms5q66glbc3c697fff1dd5qyn57pm4jbyn6gfrsrw",
7966 "depends": ["Biobase", "BiocGenerics", "RColorBrewer", "lattice", "xtable"]
7967 },
7968 "ddPCRclust": {
7969 "name": "ddPCRclust",
7970 "version": "1.30.0",
7971 "sha256": "1vj6a3wd4r0w606cm6pkdxgmmq0cmibly1xs9fdnli8z6sxpnqn1",
7972 "depends": ["R_utils", "SamSPECTRAL", "clue", "flowCore", "flowDensity", "flowPeaks", "ggplot2", "openxlsx", "plotrix"]
7973 },
7974 "dearseq": {
7975 "name": "dearseq",
7976 "version": "1.22.0",
7977 "sha256": "04a4ifz73bz0ivqirwzcr1aqfwbm7k63d9qic26n418xrdk9liwz",
7978 "depends": ["CompQuadForm", "KernSmooth", "dplyr", "ggplot2", "magrittr", "matrixStats", "patchwork", "pbapply", "reshape2", "rlang", "scattermore", "statmod", "survey", "tibble", "viridisLite"]
7979 },
7980 "debrowser": {
7981 "name": "debrowser",
7982 "version": "1.38.0",
7983 "sha256": "0d90w8v43psm2z47i1np20jvy6l331n18wyzngqgk94g7qcacw98",
7984 "depends": ["AnnotationDbi", "DESeq2", "DOSE", "DT", "GenomicRanges", "Harman", "IRanges", "RColorBrewer", "RCurl", "S4Vectors", "SummarizedExperiment", "annotate", "apeglm", "ashr", "clusterProfiler", "colourpicker", "edgeR", "enrichplot", "ggplot2", "gplots", "heatmaply", "igraph", "jsonlite", "limma", "org_Hs_eg_db", "org_Mm_eg_db", "pathview", "plotly", "reshape2", "shiny", "shinyBS", "shinydashboard", "shinyjs", "stringi", "sva"]
7985 },
7986 "decompTumor2Sig": {
7987 "name": "decompTumor2Sig",
7988 "version": "2.26.0",
7989 "sha256": "1qrgc6s3fidcjg1j16ndg9l3awh0ga2v3j84b6yg8d52whf9xs0a",
7990 "depends": ["BSgenome_Hsapiens_UCSC_hg19", "BiocGenerics", "Biostrings", "GenomicFeatures", "GenomicRanges", "Matrix", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "VariantAnnotation", "data_table", "ggplot2", "ggseqlogo", "gridExtra", "plyr", "quadprog", "readxl"]
7991 },
7992 "decontX": {
7993 "name": "decontX",
7994 "version": "1.8.0",
7995 "sha256": "00w0xd9i6lhb84q7mjjy1wgrs4sb20hpjxmkfkymk2apf5azf9p7",
7996 "depends": ["BH", "DelayedArray", "MCMCprecision", "Matrix", "Rcpp", "RcppEigen", "RcppParallel", "S4Vectors", "Seurat", "SingleCellExperiment", "StanHeaders", "SummarizedExperiment", "celda", "dbscan", "ggplot2", "patchwork", "plyr", "reshape2", "rstan", "rstantools", "scater", "withr"]
7997 },
7998 "decontam": {
7999 "name": "decontam",
8000 "version": "1.30.0",
8001 "sha256": "0vf4rkw66qxg8rcpicr0pjpgrg377nd0ykizzx5hym9vj84jhcwl",
8002 "depends": ["ggplot2", "reshape2"]
8003 },
8004 "deconvR": {
8005 "name": "deconvR",
8006 "version": "1.16.0",
8007 "sha256": "0nbkic26yw1gwcn2ha2jb4hjinc0id0gjhwl59lf38aiy9ckssya",
8008 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "assertthat", "data_table", "dplyr", "e1071", "foreach", "magrittr", "matrixStats", "methylKit", "minfi", "nnls", "quadprog", "rsq", "tidyr"]
8009 },
8010 "decoupleR": {
8011 "name": "decoupleR",
8012 "version": "2.16.0",
8013 "sha256": "1wg6nkjzj30lddhz95d1mlmdlr3fvpwkamzyil23wzm2yz6yw4i4",
8014 "depends": ["BiocParallel", "Matrix", "broom", "dplyr", "magrittr", "parallelly", "purrr", "rlang", "stringr", "tibble", "tidyr", "tidyselect", "withr"]
8015 },
8016 "deepSNV": {
8017 "name": "deepSNV",
8018 "version": "1.56.0",
8019 "sha256": "0dl4d5w2s25j8gfrrbc6gm2jz8jss89dcs6k0w2lwfh88m6h6lr4",
8020 "depends": ["Biostrings", "GenomicRanges", "IRanges", "Rhtslib", "SummarizedExperiment", "VGAM", "VariantAnnotation"]
8021 },
8022 "deltaCaptureC": {
8023 "name": "deltaCaptureC",
8024 "version": "1.24.0",
8025 "sha256": "06d8ml983s4l033vwnjh5sj8hz283zfrdkpfqj0z8nwm35vnq39j",
8026 "depends": ["DESeq2", "GenomicRanges", "IRanges", "SummarizedExperiment", "ggplot2", "tictoc"]
8027 },
8028 "deltaGseg": {
8029 "name": "deltaGseg",
8030 "version": "1.50.0",
8031 "sha256": "0y7i05l2lbv2dnib5d069zrdhmr432ig4fj72p4w72mzizfmm7p9",
8032 "depends": ["changepoint", "fBasics", "ggplot2", "pvclust", "reshape", "scales", "tseries", "wavethresh"]
8033 },
8034 "demuxSNP": {
8035 "name": "demuxSNP",
8036 "version": "1.8.0",
8037 "sha256": "1jshg2rqmlw59cdha9k4zzrhp2z4kl8hqgb00h31khi296nrbv79",
8038 "depends": ["BiocGenerics", "IRanges", "KernelKnn", "Matrix", "MatrixGenerics", "Seqinfo", "SingleCellExperiment", "SummarizedExperiment", "VariantAnnotation", "class", "demuxmix", "dplyr", "ensembldb"]
8039 },
8040 "demuxmix": {
8041 "name": "demuxmix",
8042 "version": "1.12.0",
8043 "sha256": "0p5l2ig6kwn87ksckrxf10f8cm0x7c6a07hpsn79a50jmidch902",
8044 "depends": ["MASS", "Matrix", "ggplot2", "gridExtra"]
8045 },
8046 "densvis": {
8047 "name": "densvis",
8048 "version": "1.20.0",
8049 "sha256": "1pp5ivc9rb40c66p74ypn6w2jx0maj64205rbb5k2xf70592i2p4",
8050 "depends": ["Rcpp", "Rtsne", "assertthat", "basilisk", "irlba", "reticulate"]
8051 },
8052 "derfinder": {
8053 "name": "derfinder",
8054 "version": "1.44.0",
8055 "sha256": "19r6bzx6lz03pvzjvvy0g6pbf48vzp229lbd2lpgp3z6x1ncrrz5",
8056 "depends": ["AnnotationDbi", "BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicFiles", "GenomicRanges", "Hmisc", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "bumphunter", "derfinderHelper", "qvalue", "rtracklayer"]
8057 },
8058 "derfinderHelper": {
8059 "name": "derfinderHelper",
8060 "version": "1.44.0",
8061 "sha256": "0ppgqsrrkizxzkq0bycx05wdmf3j6l3hmyp8x4is0k36s3x5x7kn",
8062 "depends": ["IRanges", "Matrix", "S4Vectors"]
8063 },
8064 "derfinderPlot": {
8065 "name": "derfinderPlot",
8066 "version": "1.44.0",
8067 "sha256": "1kh8snbldzxvs9n2i35dd1361hxnv8rwm0ll36kjywldlaa27bkj",
8068 "depends": ["GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "Seqinfo", "derfinder", "ggbio", "ggplot2", "limma", "plyr", "reshape2", "scales"]
8069 },
8070 "diffGeneAnalysis": {
8071 "name": "diffGeneAnalysis",
8072 "version": "1.92.0",
8073 "sha256": "1h9qsnj69xpzcrsx9pkf8bxinhpc08zmb5ykx7v339sghkvnqzn4",
8074 "depends": ["minpack_lm"]
8075 },
8076 "diffHic": {
8077 "name": "diffHic",
8078 "version": "1.42.0",
8079 "sha256": "08bxncp88k15sj0xfhw9fsv9kk3g4f56qqp6ybrqq1ys64b56a3z",
8080 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "InteractionSet", "Rcpp", "Rhtslib", "Rsamtools", "S4Vectors", "SummarizedExperiment", "csaw", "edgeR", "limma", "locfit", "rhdf5", "rtracklayer"]
8081 },
8082 "diffUTR": {
8083 "name": "diffUTR",
8084 "version": "1.18.0",
8085 "sha256": "00dprqbngf41n5yncaxn0kkfq0dxgz9df6c8p9064k3z35bsn5si",
8086 "depends": ["ComplexHeatmap", "DEXSeq", "GenomeInfoDb", "GenomicRanges", "IRanges", "Rsubread", "S4Vectors", "SummarizedExperiment", "dplyr", "edgeR", "ensembldb", "ggplot2", "ggrepel", "limma", "matrixStats", "rtracklayer", "stringi", "viridisLite"]
8087 },
8088 "diffcoexp": {
8089 "name": "diffcoexp",
8090 "version": "1.30.0",
8091 "sha256": "010hjbsk0y2gdk543jsjdykyd01141fmqn3pl57adhsgxmxcr8pp",
8092 "depends": ["BiocGenerics", "DiffCorr", "SummarizedExperiment", "WGCNA", "igraph", "psych"]
8093 },
8094 "diffcyt": {
8095 "name": "diffcyt",
8096 "version": "1.30.0",
8097 "sha256": "13rz4dp034pm7273z1ngrl58fqlaziv8qn501jhg3hwkjclbfzhv",
8098 "depends": ["ComplexHeatmap", "FlowSOM", "S4Vectors", "SummarizedExperiment", "circlize", "dplyr", "edgeR", "flowCore", "limma", "lme4", "magrittr", "multcomp", "reshape2", "tidyr"]
8099 },
8100 "diffuStats": {
8101 "name": "diffuStats",
8102 "version": "1.30.0",
8103 "sha256": "1hq9j64lrk6f0xskz8jn1s5ddkr947y6clj94ylkan0i68gbbpzn",
8104 "depends": ["MASS", "Matrix", "Rcpp", "RcppArmadillo", "RcppParallel", "checkmate", "expm", "igraph", "plyr", "precrec"]
8105 },
8106 "diggit": {
8107 "name": "diggit",
8108 "version": "1.42.0",
8109 "sha256": "1xi6rczrvky4s3xdb8dngadrm2iz5xj3mli869b0bn0ggsw735z0",
8110 "depends": ["Biobase", "ks", "viper"]
8111 },
8112 "dinoR": {
8113 "name": "dinoR",
8114 "version": "1.6.0",
8115 "sha256": "052lxngxi2pkxamppvafmczdxgviz7la2mbkf2jz0fa3f0di3czv",
8116 "depends": ["BiocGenerics", "ComplexHeatmap", "GenomicRanges", "Matrix", "SummarizedExperiment", "circlize", "cowplot", "dplyr", "edgeR", "ggplot2", "rlang", "stringr", "tibble", "tidyr", "tidyselect"]
8117 },
8118 "dir_expiry": {
8119 "name": "dir.expiry",
8120 "version": "1.18.0",
8121 "sha256": "1hgd5raxj732z0y5irb7vszcxf8xfha23rs3fi1jwjc84dxkghvi",
8122 "depends": ["filelock"]
8123 },
8124 "discordant": {
8125 "name": "discordant",
8126 "version": "1.34.0",
8127 "sha256": "07x2ck5vnb1nyk0lz1ffpgkfdas3x4p3fpw0zb7msvvpw9ny34jv",
8128 "depends": ["Biobase", "MASS", "Rcpp", "biwt", "dplyr", "gtools"]
8129 },
8130 "distinct": {
8131 "name": "distinct",
8132 "version": "1.22.0",
8133 "sha256": "0cpdszswk06pc0cyb51lmi4xrdcjxzadzkvj34y62i3fghfzhzxa",
8134 "depends": ["Matrix", "Rcpp", "RcppArmadillo", "SingleCellExperiment", "SummarizedExperiment", "doParallel", "doRNG", "foreach", "ggplot2", "limma", "scater"]
8135 },
8136 "dittoSeq": {
8137 "name": "dittoSeq",
8138 "version": "1.22.0",
8139 "sha256": "0fb5c78r3qi8px398fcwqkisxdx5cz6afz1plrgr3z1fdcxnspqz",
8140 "depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "colorspace", "cowplot", "ggplot2", "ggrepel", "ggridges", "gridExtra", "pheatmap", "reshape2"]
8141 },
8142 "divergence": {
8143 "name": "divergence",
8144 "version": "1.26.0",
8145 "sha256": "0xahfjc5pclrq4m41z56ysyv83n8smw2jfv53312akcy8i16wbi7",
8146 "depends": ["SummarizedExperiment"]
8147 },
8148 "dks": {
8149 "name": "dks",
8150 "version": "1.56.0",
8151 "sha256": "1zhzcq6jgcnl8di11804d6b3z5jb077cg1p3rhilpzlqsww02ym8",
8152 "depends": ["cubature"]
8153 },
8154 "dmGsea": {
8155 "name": "dmGsea",
8156 "version": "1.0.0",
8157 "sha256": "1cykkajxdsb7ama3afffc9fjhfvfci1xs7j6849l5c4lqd41v3kw",
8158 "depends": ["AnnotationDbi", "BiasedUrn", "Matrix", "Seqinfo", "SummarizedExperiment", "dqrng", "poolr"]
8159 },
8160 "dmrseq": {
8161 "name": "dmrseq",
8162 "version": "1.30.0",
8163 "sha256": "03a5my4a8dja3lnrdzng7554rfkymcvdgixibhx57hqkwwvj4qcj",
8164 "depends": ["AnnotationHub", "BiocParallel", "DelayedMatrixStats", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "Seqinfo", "annotatr", "bsseq", "bumphunter", "ggplot2", "locfit", "matrixStats", "nlme", "outliers", "rtracklayer"]
8165 },
8166 "dominoSignal": {
8167 "name": "dominoSignal",
8168 "version": "1.4.0",
8169 "sha256": "15ff1p8p5v4gqkv1spnvkx62x5ddbvmd9mxlvkgqmfywzqid2r1h",
8170 "depends": ["ComplexHeatmap", "Matrix", "biomaRt", "circlize", "dplyr", "ggpubr", "igraph", "magrittr", "plyr", "purrr"]
8171 },
8172 "doppelgangR": {
8173 "name": "doppelgangR",
8174 "version": "1.38.0",
8175 "sha256": "00jn4m8ffp3ql9qhdybjngxjki3g2hpzwdjamld7h6v2gs5dpds7",
8176 "depends": ["Biobase", "BiocParallel", "SummarizedExperiment", "digest", "impute", "mnormt", "sva"]
8177 },
8178 "doseR": {
8179 "name": "doseR",
8180 "version": "1.26.0",
8181 "sha256": "0v5gnikdjnsyy4iy45wvbhy16z5cbh9wcls460xmxdvxf2c4sb79",
8182 "depends": ["RUnit", "S4Vectors", "SummarizedExperiment", "digest", "edgeR", "lme4", "matrixStats", "mclust"]
8183 },
8184 "doubletrouble": {
8185 "name": "doubletrouble",
8186 "version": "1.10.0",
8187 "sha256": "129q971qsa4hgvfw2kaf40228ssb4syacj2sb5v59dl41vdlj5ah",
8188 "depends": ["AnnotationDbi", "Biostrings", "GenomicFeatures", "GenomicRanges", "MSA2dist", "ggplot2", "mclust", "rlang", "syntenet"]
8189 },
8190 "dreamlet": {
8191 "name": "dreamlet",
8192 "version": "1.8.0",
8193 "sha256": "1vz6a353sqgizv41gm2hrc5dzmqlwcmg50p9kscwpzrhpxid7dxn",
8194 "depends": ["BiocGenerics", "BiocParallel", "DelayedArray", "DelayedMatrixStats", "GSEABase", "IRanges", "MASS", "Matrix", "MatrixGenerics", "Rcpp", "Rdpack", "S4Arrays", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "ashr", "beachmat", "broom", "data_table", "dplyr", "edgeR", "ggbeeswarm", "ggplot2", "ggrepel", "gtools", "irlba", "limma", "lme4", "mashr", "metafor", "purrr", "remaCor", "reshape2", "rlang", "scattermore", "sparseMatrixStats", "tidyr", "variancePartition", "zenith"]
8195 },
8196 "drugTargetInteractions": {
8197 "name": "drugTargetInteractions",
8198 "version": "1.18.0",
8199 "sha256": "056dw485jmlb57w0mwmpww2xrpxkl2lai91rds77vcchvywmpa53",
8200 "depends": ["AnnotationFilter", "BiocFileCache", "RSQLite", "S4Vectors", "UniProt_ws", "biomaRt", "dplyr", "ensembldb", "rappdirs"]
8201 },
8202 "dupRadar": {
8203 "name": "dupRadar",
8204 "version": "1.40.0",
8205 "sha256": "06xhsss7hqm4n9300ff13zn4w3640i52vf00kdxkvhqzdn2vzwih",
8206 "depends": ["KernSmooth", "Rsubread"]
8207 },
8208 "dyebias": {
8209 "name": "dyebias",
8210 "version": "1.70.0",
8211 "sha256": "0ylw1wli84p8yxn7sibdg134xkgq52mi7sjpj3sjkym3d70r525i",
8212 "depends": ["Biobase", "marray"]
8213 },
8214 "easier": {
8215 "name": "easier",
8216 "version": "1.16.0",
8217 "sha256": "0z1znn8c5xkiqvfglqdmip3jh2h0idw8khrnr2hjid1fjxw2y8vf",
8218 "depends": ["BiocParallel", "DESeq2", "ROCR", "coin", "decoupleR", "dorothea", "dplyr", "easierData", "ggplot2", "ggpubr", "ggrepel", "magrittr", "matrixStats", "progeny", "quantiseqr", "reshape2", "rlang", "rstatix", "tibble", "tidyr"]
8219 },
8220 "easyRNASeq": {
8221 "name": "easyRNASeq",
8222 "version": "2.46.0",
8223 "sha256": "1vbfwgnpbqwcmqvfg4gawk8jazq709gw84wydxywwg9hl3pnxbhf",
8224 "depends": ["Biobase", "BiocFileCache", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "LSD", "Rsamtools", "S4Vectors", "Seqinfo", "ShortRead", "SummarizedExperiment", "biomaRt", "edgeR", "genomeIntervals", "rappdirs"]
8225 },
8226 "easylift": {
8227 "name": "easylift",
8228 "version": "1.8.0",
8229 "sha256": "04fqsf7q6fj1mpz90dj1xd2ndkdvlps72l8yqinhkjpb8wig4kx0",
8230 "depends": ["BiocFileCache", "GenomeInfoDb", "GenomicRanges", "R_utils", "rtracklayer"]
8231 },
8232 "easyreporting": {
8233 "name": "easyreporting",
8234 "version": "1.22.0",
8235 "sha256": "0a0fl73njp9izd64fn825jjcwic6fb69g03d2dl8c91mkw7m9raf",
8236 "depends": ["rlang", "rmarkdown", "shiny"]
8237 },
8238 "ecolitk": {
8239 "name": "ecolitk",
8240 "version": "1.82.0",
8241 "sha256": "1zwbrsa3i2arza278475kafd9197lwh3m8yn7rc4w8pgl6qdbjj5",
8242 "depends": ["Biobase"]
8243 },
8244 "edge": {
8245 "name": "edge",
8246 "version": "2.42.0",
8247 "sha256": "06axdnsa9gi2zxv4a4kraq5nk0hi9p98fsx68nkscsni6v55gdrr",
8248 "depends": ["Biobase", "MASS", "qvalue", "sva"]
8249 },
8250 "edgeR": {
8251 "name": "edgeR",
8252 "version": "4.8.0",
8253 "sha256": "0r0384f1kxx861diwrwrrqqy0jv0qyc06rfhwl0x1m4lahcb3sk3",
8254 "depends": ["limma", "locfit"]
8255 },
8256 "eds": {
8257 "name": "eds",
8258 "version": "1.12.0",
8259 "sha256": "0vz9260ahfzp61sw9wm4wpff27lcwmcbk82f2hm3l92qk29dkd0z",
8260 "depends": ["Matrix", "Rcpp"]
8261 },
8262 "eiR": {
8263 "name": "eiR",
8264 "version": "1.50.0",
8265 "sha256": "1zqd25hnn2nfhc0vb2v5ygwppiv8gndd2282pd0xapv5blqj30jv",
8266 "depends": ["BiocGenerics", "ChemmineR", "DBI", "RCurl", "RUnit", "RcppAnnoy", "digest", "snow", "snowfall"]
8267 },
8268 "eisaR": {
8269 "name": "eisaR",
8270 "version": "1.22.0",
8271 "sha256": "1c95y084aw3fwz8j2rdkz8zy79k5c9gpg64dry72c587pws7xvq9",
8272 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "edgeR", "limma"]
8273 },
8274 "enhancerHomologSearch": {
8275 "name": "enhancerHomologSearch",
8276 "version": "1.16.0",
8277 "sha256": "08v24val3dy84fhq1vxxf36w3ya1x0l1sl2yyby4zjhdav7i6nnf",
8278 "depends": ["BSgenome", "BiocFileCache", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "S4Vectors", "Seqinfo", "httr", "jsonlite", "motifmatchr", "pwalign", "rtracklayer"]
8279 },
8280 "enrichViewNet": {
8281 "name": "enrichViewNet",
8282 "version": "1.8.0",
8283 "sha256": "02xzw4yg9mdc64mgyc25vdyxh5q09c3hpigcyqad80inf6lafy4x",
8284 "depends": ["DOSE", "RCy3", "enrichplot", "gprofiler2", "igraph", "jsonlite", "reshape2", "strex", "stringr"]
8285 },
8286 "enrichplot": {
8287 "name": "enrichplot",
8288 "version": "1.30.0",
8289 "sha256": "1yh6isyyk58na142zwbaxm9my2vavzyiyafn6kaq2aza7aa2vww7",
8290 "depends": ["DOSE", "GOSemSim", "RColorBrewer", "aplot", "ggfun", "ggnewscale", "ggplot2", "ggrepel", "ggtangle", "ggtree", "igraph", "magrittr", "plyr", "purrr", "reshape2", "rlang", "scatterpie", "yulab_utils"]
8291 },
8292 "ensembldb": {
8293 "name": "ensembldb",
8294 "version": "2.34.0",
8295 "sha256": "15abvvsm4n26dl5nxrij03xnj3qxai3ckb1fif9x2znvq8127zcd",
8296 "depends": ["AnnotationDbi", "AnnotationFilter", "Biobase", "BiocGenerics", "Biostrings", "DBI", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "ProtGenerics", "RSQLite", "Rsamtools", "S4Vectors", "Seqinfo", "curl", "rtracklayer"]
8297 },
8298 "epiNEM": {
8299 "name": "epiNEM",
8300 "version": "1.34.0",
8301 "sha256": "0xp69ch3c6r5jn0q8qmwjfmzqxvrwipsk14slxgi6ykxiz6jaqwh",
8302 "depends": ["BoolNet", "BoutrosLab_plotting_general", "RColorBrewer", "e1071", "graph", "gtools", "igraph", "latex2exp", "lattice", "latticeExtra", "minet", "mnem", "pcalg"]
8303 },
8304 "epialleleR": {
8305 "name": "epialleleR",
8306 "version": "1.18.0",
8307 "sha256": "1d6kkdr9lr01l0agi0gh6674r7rvs5k80kpp36i279v7mz2irs6z",
8308 "depends": ["BH", "BiocGenerics", "GenomicRanges", "Rcpp", "Rhtslib", "data_table"]
8309 },
8310 "epidecodeR": {
8311 "name": "epidecodeR",
8312 "version": "1.18.0",
8313 "sha256": "1h8za7ijzjmik225zx14yg607adlmvlal7psni9a7n9bpx8jp2pw",
8314 "depends": ["EnvStats", "GenomicRanges", "IRanges", "dplyr", "ggplot2", "ggpubr", "rstatix", "rtracklayer"]
8315 },
8316 "epigraHMM": {
8317 "name": "epigraHMM",
8318 "version": "1.18.0",
8319 "sha256": "0cicl35l5zcfrxyrg90bd6r1scrizxbfj6vnpizacj6iyf6aj3sg",
8320 "depends": ["GenomicRanges", "GreyListChIP", "IRanges", "MASS", "Matrix", "Rcpp", "RcppArmadillo", "Rhdf5lib", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "bamsignals", "csaw", "data_table", "ggplot2", "ggpubr", "limma", "magrittr", "pheatmap", "rhdf5", "rtracklayer", "scales"]
8321 },
8322 "epimutacions": {
8323 "name": "epimutacions",
8324 "version": "1.14.0",
8325 "sha256": "1p23md7vyg4lj5x2vdjgq1cfbp0zaxdg6rlmwkwjlbg0ir9mvla2",
8326 "depends": ["AnnotationDbi", "AnnotationHub", "BiocGenerics", "BiocParallel", "ExperimentHub", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "Gviz", "Homo_sapiens", "IRanges", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "IlluminaHumanMethylation450kmanifest", "IlluminaHumanMethylationEPICanno_ilm10b2_hg19", "IlluminaHumanMethylationEPICmanifest", "S4Vectors", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg18_knownGene", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "biomaRt", "bumphunter", "ensembldb", "epimutacionsData", "ggplot2", "ggrepel", "gridExtra", "isotree", "matrixStats", "minfi", "purrr", "reshape2", "robustbase", "rtracklayer", "tibble"]
8327 },
8328 "epiregulon": {
8329 "name": "epiregulon",
8330 "version": "2.0.0",
8331 "sha256": "10k4gi72qsvr2xy9awcjqqfqlz3jkp1ncmnhq6gxa0dsbsdm1lcr",
8332 "depends": ["AnnotationHub", "BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Hsapiens_UCSC_hg38", "BSgenome_Mmusculus_UCSC_mm10", "BiocParallel", "ExperimentHub", "GenomeInfoDb", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "checkmate", "entropy", "lifecycle", "motifmatchr", "scran", "scrapper", "scuttle"]
8333 },
8334 "epiregulon_extra": {
8335 "name": "epiregulon.extra",
8336 "version": "1.6.0",
8337 "sha256": "0id51n3fpcw3zbzzvyyj30ggw5ab04g8cbw5kh22411a66b1hf9m",
8338 "depends": ["ComplexHeatmap", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "checkmate", "circlize", "clusterProfiler", "ggplot2", "ggraph", "igraph", "patchwork", "reshape2", "scales", "scater", "scran"]
8339 },
8340 "epistack": {
8341 "name": "epistack",
8342 "version": "1.16.0",
8343 "sha256": "1vdqpdnif38nga5xpnj4d8d1jz0w4rlxnpzbl4d0xm7075zgckhh",
8344 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "plotrix"]
8345 },
8346 "epistasisGA": {
8347 "name": "epistasisGA",
8348 "version": "1.12.0",
8349 "sha256": "09svmywzzip89jdz6wc7c4sqlilyvkwr4sqc41dr6d615z88z755",
8350 "depends": ["BH", "BiocParallel", "Rcpp", "RcppArmadillo", "batchtools", "bigmemory", "data_table", "ggplot2", "igraph", "matrixStats", "qgraph", "survival"]
8351 },
8352 "epivizr": {
8353 "name": "epivizr",
8354 "version": "2.40.0",
8355 "sha256": "1yhn33p12497p2zzf6sar93gb9par2d4hsiq63kpjky6c8g3xw95",
8356 "depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "bumphunter", "epivizrData", "epivizrServer"]
8357 },
8358 "epivizrChart": {
8359 "name": "epivizrChart",
8360 "version": "1.32.0",
8361 "sha256": "17sc1wd55vjakb62341w8xgpvy2dz16zwy5ryyzdkvlwgp002f9x",
8362 "depends": ["BiocGenerics", "epivizrData", "epivizrServer", "htmltools", "rjson"]
8363 },
8364 "epivizrData": {
8365 "name": "epivizrData",
8366 "version": "1.38.0",
8367 "sha256": "19nkckx5a54zl3r3ck7nfnqzsjw0r6dxindd0gfx8jm9b9y9yxs3",
8368 "depends": ["Biobase", "GenomicFeatures", "GenomicRanges", "IRanges", "OrganismDbi", "S4Vectors", "Seqinfo", "SummarizedExperiment", "ensembldb", "epivizrServer"]
8369 },
8370 "epivizrServer": {
8371 "name": "epivizrServer",
8372 "version": "1.38.0",
8373 "sha256": "19lvghdnq6p2lr280ml0wvmh6q1071x2l1pacf2p354va0idkxkm",
8374 "depends": ["R6", "httpuv", "mime", "rjson"]
8375 },
8376 "epivizrStandalone": {
8377 "name": "epivizrStandalone",
8378 "version": "1.38.0",
8379 "sha256": "0l253z1fvxll449p5nvp0qy43xkzmk6mggyacw3fbkfndlakpv5a",
8380 "depends": ["BiocGenerics", "GenomicFeatures", "S4Vectors", "Seqinfo", "epivizr", "epivizrServer", "git2r"]
8381 },
8382 "erccdashboard": {
8383 "name": "erccdashboard",
8384 "version": "1.44.0",
8385 "sha256": "0af77ir60aqlg5589hkkcr5hapl9nymgxc1m3j2cb5hg23nsw3j4",
8386 "depends": ["MASS", "ROCR", "edgeR", "ggplot2", "gplots", "gridExtra", "gtools", "knitr", "limma", "locfit", "plyr", "qvalue", "reshape2", "scales", "stringr"]
8387 },
8388 "esATAC": {
8389 "name": "esATAC",
8390 "version": "1.32.0",
8391 "sha256": "0gvw67vdw2bcjn7g4077397vsf3lgfdayfxym5miz3gd0bdd8gln",
8392 "depends": ["AnnotationDbi", "BSgenome", "BiocGenerics", "BiocManager", "Biostrings", "ChIPseeker", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "JASPAR2018", "R_utils", "Rbowtie2", "Rcpp", "Rsamtools", "S4Vectors", "Seqinfo", "ShortRead", "TFBSTools", "VennDiagram", "clusterProfiler", "corrplot", "digest", "ggplot2", "igraph", "knitr", "magrittr", "motifmatchr", "pipeFrame", "rJava", "rmarkdown", "rtracklayer"]
8393 },
8394 "escape": {
8395 "name": "escape",
8396 "version": "2.5.5",
8397 "sha256": "0i8d7qsc0mb6zlcwahi9f4gmx71as49wj09l82hkyvf0g50b30wc",
8398 "depends": ["Matrix", "MatrixGenerics", "SummarizedExperiment", "ggdist", "ggplot2"]
8399 },
8400 "escheR": {
8401 "name": "escheR",
8402 "version": "1.10.0",
8403 "sha256": "0blmmcn2vys0pkkyfhbwy1lpywbcb9m4yp2xz4njgq3iml5bb98x",
8404 "depends": ["SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "ggplot2", "rlang"]
8405 },
8406 "esetVis": {
8407 "name": "esetVis",
8408 "version": "1.36.0",
8409 "sha256": "1crl2f2wxb98k1xjmbcbl143wpy6nv2blmyl78iix154pjcb7rkv",
8410 "depends": ["Biobase", "MASS", "MLP", "Rtsne", "hexbin", "mpm"]
8411 },
8412 "eudysbiome": {
8413 "name": "eudysbiome",
8414 "version": "1.40.0",
8415 "sha256": "1zxh2gpbhl2sbpv0yrhay3rxkcv5mcgmdmc99ixmj9lfrw1zl4nv",
8416 "depends": ["Biostrings", "R_utils", "Rsamtools", "plyr"]
8417 },
8418 "evaluomeR": {
8419 "name": "evaluomeR",
8420 "version": "1.26.0",
8421 "sha256": "1disy9mbq8090bsl429lz0b30vb7k2ss3qyrcig8i3ldsyr9gw25",
8422 "depends": ["MASS", "MultiAssayExperiment", "RSKC", "Rdpack", "SummarizedExperiment", "class", "cluster", "corrplot", "dendextend", "dplyr", "flexmix", "fpc", "ggdendro", "ggplot2", "kableExtra", "matrixStats", "mclust", "plotrix", "prabclus", "randomForest", "reshape2", "sparcl"]
8423 },
8424 "extraChIPs": {
8425 "name": "extraChIPs",
8426 "version": "1.14.0",
8427 "sha256": "08lk9lqiincl5g4r9lmra3557jn6vklmsc6c2iw142j9xr3y8d0v",
8428 "depends": ["BiocParallel", "GenomeInfoDb", "GenomicRanges", "IRanges", "InteractionSet", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "csaw", "dplyr", "edgeR", "forcats", "ggplot2", "ggrepel", "ggside", "glue", "matrixStats", "patchwork", "rlang", "rtracklayer", "scales", "stringr", "tibble", "tidyr", "tidyselect", "vctrs"]
8429 },
8430 "fCCAC": {
8431 "name": "fCCAC",
8432 "version": "1.36.0",
8433 "sha256": "00mcnlfawsvya1rclivkkig5nfwlb47kc44b2xvfk2njkild8fbd",
8434 "depends": ["ComplexHeatmap", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "fda", "genomation", "ggplot2"]
8435 },
8436 "fCI": {
8437 "name": "fCI",
8438 "version": "1.40.0",
8439 "sha256": "1icdmwbl27c7i2hrkhqj201fnbzj5g6ybhmv2dd5lfhpx3gww6lr",
8440 "depends": ["FNN", "VennDiagram", "gtools", "psych", "rgl", "zoo"]
8441 },
8442 "fabia": {
8443 "name": "fabia",
8444 "version": "2.56.0",
8445 "sha256": "1419icrgj7hxi713f4l2l6sqfxh9g1c49g4ls879bvfssxndsxds",
8446 "depends": ["Biobase"]
8447 },
8448 "factDesign": {
8449 "name": "factDesign",
8450 "version": "1.86.0",
8451 "sha256": "174r4prhhp2fbl9kaxp28p36srj65pp72lxqwicsr25vwkp4vfvs",
8452 "depends": ["Biobase"]
8453 },
8454 "faers": {
8455 "name": "faers",
8456 "version": "1.6.0",
8457 "sha256": "1w6b5h3ww33nydfwa2hbmxag9am7wd39gmsm5155bl83qrdyxxfa",
8458 "depends": ["BiocParallel", "MCMCpack", "brio", "cli", "curl", "data_table", "httr2", "openEBGM", "rlang", "rvest", "vroom", "xml2"]
8459 },
8460 "fastLiquidAssociation": {
8461 "name": "fastLiquidAssociation",
8462 "version": "1.46.0",
8463 "sha256": "0qvacr9486r6sdw3f6rxrs7rhhk0aigsxjqqib771vi69q480bf4",
8464 "depends": ["Hmisc", "LiquidAssociation", "WGCNA", "doParallel", "impute", "preprocessCore"]
8465 },
8466 "fastreeR": {
8467 "name": "fastreeR",
8468 "version": "2.0.0",
8469 "sha256": "02pw9gsakadzb7p1k1fk6ynqyqlflxilw7mvgjn94z11lzjvxfx4",
8470 "depends": ["R_utils", "ape", "data_table", "dynamicTreeCut", "rJava", "stringr"]
8471 },
8472 "fastseg": {
8473 "name": "fastseg",
8474 "version": "1.56.0",
8475 "sha256": "0q007hg6afi4h05gkw1hm7aqi0g9lzqxnq6yljkl14lvw0ihjb3h",
8476 "depends": ["Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors"]
8477 },
8478 "fcScan": {
8479 "name": "fcScan",
8480 "version": "1.24.0",
8481 "sha256": "0w4g65qcaxy8x30r1f638dm69kslxab2gy761ggvb8if5r7631sb",
8482 "depends": ["GenomicRanges", "IRanges", "SummarizedExperiment", "VariantAnnotation", "doParallel", "foreach", "plyr", "rtracklayer"]
8483 },
8484 "fdrame": {
8485 "name": "fdrame",
8486 "version": "1.82.0",
8487 "sha256": "1526yh6rbimf0lnpmbi2dhamfrcfahfb85q23h3i6x0pcrp3nw2f",
8488 "depends": []
8489 },
8490 "fedup": {
8491 "name": "fedup",
8492 "version": "1.18.0",
8493 "sha256": "0lv648vh8kp14b1alnp5p5x3kykj5sb19rp3vs7nf0fqr1yid3xn",
8494 "depends": ["RColorBrewer", "RCy3", "data_table", "dplyr", "forcats", "ggplot2", "ggthemes", "openxlsx", "tibble"]
8495 },
8496 "fenr": {
8497 "name": "fenr",
8498 "version": "1.8.0",
8499 "sha256": "0lpfach366p3z9y0z0r6xgv5yk02dr0782caxhjsix7jid1rf48v",
8500 "depends": ["BiocFileCache", "assertthat", "dplyr", "ggplot2", "httr2", "progress", "purrr", "readr", "rlang", "rvest", "shiny", "stringr", "tibble", "tidyr", "tidyselect"]
8501 },
8502 "ffpe": {
8503 "name": "ffpe",
8504 "version": "1.54.0",
8505 "sha256": "18k4i9hy7c1hrpm8cqi1npx4dq9fand6lrdk92mbr7lcgl3w25lh",
8506 "depends": ["Biobase", "BiocGenerics", "TTR", "affy", "lumi", "methylumi", "sfsmisc"]
8507 },
8508 "fgga": {
8509 "name": "fgga",
8510 "version": "1.18.0",
8511 "sha256": "1hz72m434axgiikh8bfk5jb16aq920y8wqimphpd27v8iq452fv1",
8512 "depends": ["BiocFileCache", "RBGL", "curl", "e1071", "gRbase", "graph", "igraph", "jsonlite"]
8513 },
8514 "fgsea": {
8515 "name": "fgsea",
8516 "version": "1.36.0",
8517 "sha256": "040z8k28zg9rlvlrywp1ah39pcll74jdmfzhy2r7rijmmvw8ypip",
8518 "depends": ["BH", "BiocParallel", "Matrix", "Rcpp", "cowplot", "data_table", "fastmatch", "ggplot2", "scales"]
8519 },
8520 "findIPs": {
8521 "name": "findIPs",
8522 "version": "1.6.0",
8523 "sha256": "1fw8zjnn9ayijqjjmjx7w7jpwrsfcnlinznqvjd4qsi0bz8zir3b",
8524 "depends": ["Biobase", "BiocParallel", "SummarizedExperiment", "survival"]
8525 },
8526 "fishpond": {
8527 "name": "fishpond",
8528 "version": "2.16.0",
8529 "sha256": "0bqbsciq0yxldc8zdjj829n11pn2r4qrc4wsnarm2dp49dy4ipp3",
8530 "depends": ["GenomicRanges", "IRanges", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "abind", "gtools", "jsonlite", "matrixStats", "qvalue", "svMisc"]
8531 },
8532 "flagme": {
8533 "name": "flagme",
8534 "version": "1.66.0",
8535 "sha256": "0zyjvwd4xgdy0brfb8xyq1h4il8gx65s2smk7395qh87fqbkd05k",
8536 "depends": ["CAMERA", "MASS", "SparseM", "gcspikelite", "gplots", "xcms"]
8537 },
8538 "flowAI": {
8539 "name": "flowAI",
8540 "version": "1.40.0",
8541 "sha256": "095410xm3zmbbp5sfwp581mhnndcsq4g325f4i0gka1ll5hqnwqm",
8542 "depends": ["RColorBrewer", "changepoint", "flowCore", "ggplot2", "knitr", "plyr", "reshape2", "rmarkdown", "scales"]
8543 },
8544 "flowBeads": {
8545 "name": "flowBeads",
8546 "version": "1.48.0",
8547 "sha256": "1gnxbz9lpiigaa5yk83k8vz15jd2ci86ya973m92ijdij3pkrc7h",
8548 "depends": ["Biobase", "flowCore", "knitr", "rrcov", "xtable"]
8549 },
8550 "flowBin": {
8551 "name": "flowBin",
8552 "version": "1.46.0",
8553 "sha256": "1r9hddrwq9s5i83j2scppg7cqbn9fr0ymyrh7wwbs22h83qwbcsj",
8554 "depends": ["BiocGenerics", "class", "flowCore", "flowFP", "limma", "snow"]
8555 },
8556 "flowCHIC": {
8557 "name": "flowCHIC",
8558 "version": "1.44.0",
8559 "sha256": "0qxy6s6l6m0whw33sf105bh683f56fmhdnf6wnq7ig00llm8c902",
8560 "depends": ["EBImage", "flowCore", "ggplot2", "hexbin", "vegan"]
8561 },
8562 "flowClean": {
8563 "name": "flowClean",
8564 "version": "1.48.0",
8565 "sha256": "1njbcr86x13pbp43aiacjpqxbfkiqdzdzddqrd8d9fkmsknfbbfh",
8566 "depends": ["bit", "changepoint", "flowCore", "sfsmisc"]
8567 },
8568 "flowClust": {
8569 "name": "flowClust",
8570 "version": "3.48.0",
8571 "sha256": "1ncx63ynqxaldc8mb68k8jwq116myml6ccgh9j7n5dcvhfcqgqf1",
8572 "depends": ["Biobase", "BiocGenerics", "flowCore", "graph"]
8573 },
8574 "flowCore": {
8575 "name": "flowCore",
8576 "version": "2.22.0",
8577 "sha256": "0rmlff8d36z8d59s9w4va0csdklz6vkl8k0ywyg6rgmg5k327jqd",
8578 "depends": ["BH", "Biobase", "BiocGenerics", "RProtoBufLib", "Rcpp", "S4Vectors", "cpp11", "cytolib", "matrixStats"]
8579 },
8580 "flowCut": {
8581 "name": "flowCut",
8582 "version": "1.20.0",
8583 "sha256": "1zism6y5gcqklncblf9ksbsnv2ic06djr4aq9h01ixjmmh1f4w72",
8584 "depends": ["Cairo", "e1071", "flowCore", "flowDensity"]
8585 },
8586 "flowCyBar": {
8587 "name": "flowCyBar",
8588 "version": "1.46.0",
8589 "sha256": "1ckzmjnjhjdw32mli8pyqgkmq6kk64vdm99qy165q32p39gfp3wl",
8590 "depends": ["gplots", "vegan"]
8591 },
8592 "flowDensity": {
8593 "name": "flowDensity",
8594 "version": "1.44.0",
8595 "sha256": "0rxjwx9pynpz0ylf8znd4h61qazl91p1s2435dsl654ik7wpqw8c",
8596 "depends": ["car", "flowCore", "flowViz", "gplots", "polyclip"]
8597 },
8598 "flowFP": {
8599 "name": "flowFP",
8600 "version": "1.68.0",
8601 "sha256": "1ngn0b3k28fksl6xx65634i138j87mn0s6myiw40blc2c485i9xz",
8602 "depends": ["Biobase", "BiocGenerics", "flowCore", "flowViz"]
8603 },
8604 "flowGate": {
8605 "name": "flowGate",
8606 "version": "1.10.0",
8607 "sha256": "0ddavbhgw62w2alj972n0q4l61ilz1iqnrc1mwdwaps0208b5l5d",
8608 "depends": ["BiocManager", "dplyr", "flowCore", "flowWorkspace", "ggcyto", "ggplot2", "purrr", "rlang", "shiny", "tibble"]
8609 },
8610 "flowGraph": {
8611 "name": "flowGraph",
8612 "version": "1.18.0",
8613 "sha256": "0dy2jygbm3dzcsh33abah8cnz9srxw2234qfyl0jrzpwnfs0c8vd",
8614 "depends": ["Matrix", "Rdpack", "data_table", "effsize", "furrr", "future", "ggiraph", "ggplot2", "ggrepel", "gridExtra", "htmlwidgets", "igraph", "matrixStats", "purrr", "stringi", "stringr", "visNetwork"]
8615 },
8616 "flowMatch": {
8617 "name": "flowMatch",
8618 "version": "1.46.0",
8619 "sha256": "0p8v6bxbc3mnwjf8lf6d5zqlddlcacwsayla2wbb0535dfvkfmjp",
8620 "depends": ["Biobase", "Rcpp", "flowCore"]
8621 },
8622 "flowMeans": {
8623 "name": "flowMeans",
8624 "version": "1.70.0",
8625 "sha256": "0q2pnfadn8f4hhn2qd7yqrdl9hkjmcqizm5wjjybrhxq1g8sb15d",
8626 "depends": ["Biobase", "feature", "flowCore", "rrcov"]
8627 },
8628 "flowMerge": {
8629 "name": "flowMerge",
8630 "version": "2.58.0",
8631 "sha256": "0j0m6r06gpxbjlr1x3cjx1iyp78b61kmdxs0d9fby7mjjj67k8jc",
8632 "depends": ["Rgraphviz", "feature", "flowClust", "flowCore", "foreach", "graph", "rrcov", "snow"]
8633 },
8634 "flowPeaks": {
8635 "name": "flowPeaks",
8636 "version": "1.56.0",
8637 "sha256": "1znvp3in8l6rcmmfbir2b94wgbmdf9bwisp21c5cfkxq5yckwdvx",
8638 "depends": []
8639 },
8640 "flowPloidy": {
8641 "name": "flowPloidy",
8642 "version": "1.36.0",
8643 "sha256": "0z8rrrw8c9pxp14dcdlb2g515krimv9hbmaivifrpswxhpwq6qln",
8644 "depends": ["caTools", "car", "flowCore", "knitr", "minpack_lm", "rmarkdown", "shiny"]
8645 },
8646 "flowPlots": {
8647 "name": "flowPlots",
8648 "version": "1.58.0",
8649 "sha256": "1hihd7jsfnhil3zisb1yhnc5p8qwxw681d2vj1zpg28lklvx702p",
8650 "depends": []
8651 },
8652 "flowSpecs": {
8653 "name": "flowSpecs",
8654 "version": "1.24.0",
8655 "sha256": "01an7rpmhwlvxh5y4silc4508yqp404g4fxsm2d9gjp3xpgwj2qn",
8656 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "flowCore", "ggplot2", "reshape2", "zoo"]
8657 },
8658 "flowStats": {
8659 "name": "flowStats",
8660 "version": "4.22.0",
8661 "sha256": "0hf1y1bgvvnr3g8zj246pzyrl5p5811m509dvwd1jmzqri129fcl",
8662 "depends": ["Biobase", "BiocGenerics", "KernSmooth", "MASS", "RColorBrewer", "clue", "cluster", "corpcor", "fda", "flowCore", "flowViz", "flowWorkspace", "ks", "lattice", "mnormt", "ncdfFlow", "rrcov"]
8663 },
8664 "flowTime": {
8665 "name": "flowTime",
8666 "version": "1.34.0",
8667 "sha256": "15djxvxcffncxywwviwwgw2g09j1w4y5a293b6cs3paqlp6w05ba",
8668 "depends": ["dplyr", "flowCore", "magrittr", "plyr", "rlang", "tibble"]
8669 },
8670 "flowTrans": {
8671 "name": "flowTrans",
8672 "version": "1.62.0",
8673 "sha256": "16h776hi33axcqr9v7lcvzmrzh273gyg8gc1ybyi8j12ry5wlbrs",
8674 "depends": ["flowClust", "flowCore", "flowViz"]
8675 },
8676 "flowVS": {
8677 "name": "flowVS",
8678 "version": "1.42.0",
8679 "sha256": "0j7q9i3qy15xwncj7mhzmvivl45h7pykpk8ps3zlc5hmwv3ri9qm",
8680 "depends": ["flowCore", "flowStats", "flowViz"]
8681 },
8682 "flowViz": {
8683 "name": "flowViz",
8684 "version": "1.74.0",
8685 "sha256": "1615f5r2y51dazynjsihxp4q56zgn70wfd5fjcvr0pw3l7wbh77n",
8686 "depends": ["Biobase", "IDPmisc", "KernSmooth", "MASS", "RColorBrewer", "flowCore", "hexbin", "lattice", "latticeExtra"]
8687 },
8688 "flowWorkspace": {
8689 "name": "flowWorkspace",
8690 "version": "4.22.0",
8691 "sha256": "1hy44nyhgk8z85lis8nz1djsma4wyanixibs7qds0xgimk5r9qqq",
8692 "depends": ["BH", "Biobase", "BiocGenerics", "DelayedArray", "RBGL", "RProtoBufLib", "Rgraphviz", "Rhdf5lib", "S4Vectors", "XML", "cpp11", "cytolib", "data_table", "dplyr", "flowCore", "ggplot2", "graph", "matrixStats", "ncdfFlow", "scales"]
8693 },
8694 "flowcatchR": {
8695 "name": "flowcatchR",
8696 "version": "1.44.0",
8697 "sha256": "17nww1smm4vvfqfgjsdabcvix4hd836601y5cq0wial6y3ixhhmy",
8698 "depends": ["BiocParallel", "EBImage", "abind", "colorRamps", "plotly", "shiny"]
8699 },
8700 "fmcsR": {
8701 "name": "fmcsR",
8702 "version": "1.52.0",
8703 "sha256": "1x4hczppvdgsmdn57fmfkr9gcfj952jslha5fshs6pbyyq2xqjik",
8704 "depends": ["BiocGenerics", "ChemmineR", "RUnit"]
8705 },
8706 "fmrs": {
8707 "name": "fmrs",
8708 "version": "1.20.0",
8709 "sha256": "1ai903fi74kl10d6bamaaf75zclyvff589chad2z9xymf4ixybsc",
8710 "depends": ["survival"]
8711 },
8712 "fobitools": {
8713 "name": "fobitools",
8714 "version": "1.18.0",
8715 "sha256": "0bczh98lppj4kr0rbd1jsxc3syg3113f38h89y258b21m1ivp7my",
8716 "depends": ["RecordLinkage", "clisymbols", "crayon", "dplyr", "fgsea", "ggplot2", "ggraph", "magrittr", "ontologyIndex", "purrr", "stringr", "textclean", "tictoc", "tidygraph", "tidyr", "vroom"]
8717 },
8718 "frenchFISH": {
8719 "name": "frenchFISH",
8720 "version": "1.22.0",
8721 "sha256": "1fxd9p742j9svl0j86357iiy0h9slka69dgll58vmlrs4xzyq3p0",
8722 "depends": ["MCMCpack", "NHPoisson"]
8723 },
8724 "frma": {
8725 "name": "frma",
8726 "version": "1.62.0",
8727 "sha256": "0kiwvcivw27m394ls3qx7cl7lazbpa4kg4lg3hlg12jqzpb3z6dx",
8728 "depends": ["Biobase", "BiocGenerics", "DBI", "MASS", "affy", "oligo", "oligoClasses", "preprocessCore"]
8729 },
8730 "frmaTools": {
8731 "name": "frmaTools",
8732 "version": "1.62.0",
8733 "sha256": "0w3igjhqd2whmcvvwdjsgws1q4gb74d9gn7sgkb0zjc41rrh416c",
8734 "depends": ["Biobase", "DBI", "affy", "preprocessCore"]
8735 },
8736 "funOmics": {
8737 "name": "funOmics",
8738 "version": "1.4.0",
8739 "sha256": "1sqalmryyvgd68prhjvp9xmnx5v8sjirxpr86vv070ag75j4hs91",
8740 "depends": ["AnnotationDbi", "KEGGREST", "NMF", "dplyr", "org_Hs_eg_db", "pathifier", "stringr"]
8741 },
8742 "funtooNorm": {
8743 "name": "funtooNorm",
8744 "version": "1.34.0",
8745 "sha256": "1ka05p1cmv2cmlawir25c12hwb51bnnd8s327qqb3xyigkb32nb8",
8746 "depends": ["GenomeInfoDb", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "IlluminaHumanMethylation450kmanifest", "matrixStats", "minfi", "pls"]
8747 },
8748 "gCrisprTools": {
8749 "name": "gCrisprTools",
8750 "version": "2.16.0",
8751 "sha256": "1i7gz0yalkdjgkx7ma3yrvyj5rj19s2cjy9wc2z6nkcbhqw7i8m7",
8752 "depends": ["Biobase", "ComplexHeatmap", "RobustRankAggreg", "SummarizedExperiment", "ggplot2", "limma", "rmarkdown"]
8753 },
8754 "gDNAx": {
8755 "name": "gDNAx",
8756 "version": "1.8.0",
8757 "sha256": "0nzqf4rnvn42br0awr8qwmp0w4cjnp6rwv414rz51pgan59vgcg9",
8758 "depends": ["AnnotationDbi", "AnnotationHub", "BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicFiles", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "bitops", "cli", "matrixStats", "plotrix"]
8759 },
8760 "gDR": {
8761 "name": "gDR",
8762 "version": "1.8.0",
8763 "sha256": "0h7pjvrjl2l6h51vnws4mkxgfl9q3xpn9gakv5imqfliw22q23mp",
8764 "depends": ["gDRcore", "gDRimport", "gDRutils"]
8765 },
8766 "gDRcore": {
8767 "name": "gDRcore",
8768 "version": "1.8.0",
8769 "sha256": "1h0najhngsqcyn431wixj82j6j2j9mx5qj7whssm0db48dj1y71k",
8770 "depends": ["BiocParallel", "BumpyMatrix", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "checkmate", "data_table", "futile_logger", "gDRutils", "purrr", "stringr"]
8771 },
8772 "gDRimport": {
8773 "name": "gDRimport",
8774 "version": "1.8.0",
8775 "sha256": "1lxl7m5lvza1jwcbbfh71jwjn1s17ys06skwxmz6k98nbdgx98nh",
8776 "depends": ["BumpyMatrix", "CoreGx", "MultiAssayExperiment", "PharmacoGx", "S4Vectors", "SummarizedExperiment", "XML", "assertthat", "checkmate", "data_table", "futile_logger", "gDRutils", "magrittr", "openxlsx", "readxl", "rio", "stringi", "tibble", "yaml"]
8777 },
8778 "gDRstyle": {
8779 "name": "gDRstyle",
8780 "version": "1.8.0",
8781 "sha256": "1qip0l8qg972yrb4mhzp74ils8d2iw9j5df3kfi9rsblzbqz7093",
8782 "depends": ["BiocCheck", "BiocManager", "BiocStyle", "checkmate", "desc", "git2r", "lintr", "pkgbuild", "rcmdcheck", "remotes", "rjson", "withr", "yaml"]
8783 },
8784 "gDRutils": {
8785 "name": "gDRutils",
8786 "version": "1.8.0",
8787 "sha256": "0fmga9d395srdlsmw4ivpm5x99snyg6pwd9qp80xfjf4y62k1p47",
8788 "depends": ["BiocParallel", "BumpyMatrix", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "checkmate", "data_table", "digest", "drc", "jsonlite", "jsonvalidate", "qs", "stringr"]
8789 },
8790 "gVenn": {
8791 "name": "gVenn",
8792 "version": "1.0.0",
8793 "sha256": "146596jgp3g7xiismdll8l0sfhyragn3ggpln2jmjqmk868k2hzc",
8794 "depends": ["ComplexHeatmap", "GenomicRanges", "IRanges", "eulerr", "lubridate", "rtracklayer", "stringr", "writexl"]
8795 },
8796 "gaga": {
8797 "name": "gaga",
8798 "version": "2.56.0",
8799 "sha256": "0zia3kqnxfcvkc8jijzgmhkm3nk43nvd5z84aanbzzqrmnxlws4j",
8800 "depends": ["Biobase", "EBarrays", "coda", "mgcv"]
8801 },
8802 "gage": {
8803 "name": "gage",
8804 "version": "2.60.0",
8805 "sha256": "0qza3nm3fmm6g8jsymiv7k8pqygxb1c4gys5gf65nj3gbwrnscba",
8806 "depends": ["AnnotationDbi", "GO_db", "KEGGREST", "graph"]
8807 },
8808 "garfield": {
8809 "name": "garfield",
8810 "version": "1.38.0",
8811 "sha256": "1xw5ylns5jfjlbz0m3kdp71067p6rxlg8zxmx5xvnr1igqmz8mk0",
8812 "depends": []
8813 },
8814 "gatom": {
8815 "name": "gatom",
8816 "version": "1.8.0",
8817 "sha256": "1sps2fmi2dwxxrnf0l7rf58ng8mqhfx2lr44vrhhgmbvc9n7gsnr",
8818 "depends": ["BioNet", "GGally", "XML", "data_table", "ggplot2", "htmltools", "htmlwidgets", "igraph", "intergraph", "mwcsr", "network", "plyr", "pryr", "shinyCyJS", "sna"]
8819 },
8820 "gcapc": {
8821 "name": "gcapc",
8822 "version": "1.34.0",
8823 "sha256": "157jslmk9big03fag3687v9gzi8r6fmvcbx819sv344qjw6iid95",
8824 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "MASS", "Rsamtools", "S4Vectors", "Seqinfo", "matrixStats"]
8825 },
8826 "gcatest": {
8827 "name": "gcatest",
8828 "version": "2.10.0",
8829 "sha256": "0ay9ji48x3ypz7x8x7qhrp6r762p021c1hmc0j12sgs1f3wkwbh9",
8830 "depends": ["lfa"]
8831 },
8832 "gcrma": {
8833 "name": "gcrma",
8834 "version": "2.82.0",
8835 "sha256": "1q37xcka0lxacslrbka36kic0fb3w7qsy1rl78spbzdykzxbgnc1",
8836 "depends": ["Biobase", "BiocManager", "Biostrings", "XVector", "affy", "affyio"]
8837 },
8838 "gdsfmt": {
8839 "name": "gdsfmt",
8840 "version": "1.46.0",
8841 "sha256": "0kc4s5c82qbkrbfqg1n46302ab3in7z106jgsdvbj3k3ms2d6y4v",
8842 "depends": []
8843 },
8844 "geNetClassifier": {
8845 "name": "geNetClassifier",
8846 "version": "1.50.0",
8847 "sha256": "1hsm0zbzw5syz9f0jrwxlczac11xc8as9w9vlhibwmc7hm8aasqx",
8848 "depends": ["Biobase", "EBarrays", "e1071", "minet"]
8849 },
8850 "gemini": {
8851 "name": "gemini",
8852 "version": "1.24.0",
8853 "sha256": "0kw4hkgv7w31wmjjgwwq5d3d52mfb8v37yqvicbkp1ah3i2w9wl9",
8854 "depends": ["dplyr", "ggplot2", "magrittr", "mixtools", "pbmcapply", "scales"]
8855 },
8856 "gemma_R": {
8857 "name": "gemma.R",
8858 "version": "3.6.0",
8859 "sha256": "1p23x7jnsi4ja8f45pf2vqlyx26730nhfhlxrc3kq0qkhx10xyl1",
8860 "depends": ["Biobase", "R_utils", "S4Vectors", "SummarizedExperiment", "assertthat", "base64enc", "bit64", "data_table", "digest", "glue", "httr", "jsonlite", "kableExtra", "lubridate", "magrittr", "memoise", "rappdirs", "rlang", "stringr", "tibble", "tidyr"]
8861 },
8862 "genArise": {
8863 "name": "genArise",
8864 "version": "1.86.0",
8865 "sha256": "1kv4f2d0zlm5nikz3wqs66g648ag1m2fx64lq29q37hnpaz25xib",
8866 "depends": ["locfit", "tkrplot", "xtable"]
8867 },
8868 "geneAttribution": {
8869 "name": "geneAttribution",
8870 "version": "1.36.0",
8871 "sha256": "14ba7smlaij0h0lmp3z63mzhbni9p26anl8psdl5aaqvlvkzaqkr",
8872 "depends": ["BiocGenerics", "GenomicFeatures", "GenomicRanges", "IRanges", "Seqinfo", "org_Hs_eg_db", "rtracklayer"]
8873 },
8874 "geneClassifiers": {
8875 "name": "geneClassifiers",
8876 "version": "1.34.0",
8877 "sha256": "1avhd24hcfh0a8g0h5171rbxrqnf8bq3frdspqnkls3f7vzqx2b2",
8878 "depends": ["Biobase", "BiocGenerics"]
8879 },
8880 "geneRecommender": {
8881 "name": "geneRecommender",
8882 "version": "1.82.0",
8883 "sha256": "037m4fhflfqa4jpms9200qb5l9j780b3glwfr5vff37hy1rr7wag",
8884 "depends": ["Biobase"]
8885 },
8886 "geneRxCluster": {
8887 "name": "geneRxCluster",
8888 "version": "1.46.0",
8889 "sha256": "1ay2n9p707qkiwvqblm39yys8mnfq7zbps2j1yx8vcq5l8h42hsl",
8890 "depends": ["GenomicRanges", "IRanges"]
8891 },
8892 "geneXtendeR": {
8893 "name": "geneXtendeR",
8894 "version": "1.36.0",
8895 "sha256": "1cirzfrxwrqqakpwizih0ixvxnkvj7vmphr5nwrvmhpfbavs3dkf",
8896 "depends": ["AnnotationDbi", "BiocStyle", "GO_db", "RColorBrewer", "SnowballC", "data_table", "dplyr", "networkD3", "org_Rn_eg_db", "rtracklayer", "tm", "wordcloud"]
8897 },
8898 "genefilter": {
8899 "name": "genefilter",
8900 "version": "1.92.0",
8901 "sha256": "1snc3xkw1x2d6cbxsprpbnhh9ywcb0mf56qgm2hnd1qyy1ldaylc",
8902 "depends": ["AnnotationDbi", "Biobase", "MatrixGenerics", "annotate", "survival"]
8903 },
8904 "genefu": {
8905 "name": "genefu",
8906 "version": "2.42.0",
8907 "sha256": "11264hwfp1wkbnq2y7i4n8xh2hamq8qc92jb6shyl84fc6m2c21z",
8908 "depends": ["AIMS", "amap", "biomaRt", "iC10", "iC10TrainingData", "impute", "limma", "mclust", "survcomp"]
8909 },
8910 "geneplast": {
8911 "name": "geneplast",
8912 "version": "1.36.0",
8913 "sha256": "1p3rav9c8fzq1mwi93w4rcg9y92m3rxg98qqn1khg7m7dq1vqkpr",
8914 "depends": ["ape", "data_table", "igraph", "snow"]
8915 },
8916 "geneplotter": {
8917 "name": "geneplotter",
8918 "version": "1.88.0",
8919 "sha256": "1b2iq04rxzq28bihr9abhk66ynnjizkgkdls66r2g3r3kdm66xzm",
8920 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "RColorBrewer", "annotate", "lattice"]
8921 },
8922 "genomation": {
8923 "name": "genomation",
8924 "version": "1.42.0",
8925 "sha256": "1v0zq82cg4vixmsa4plcjf0zp1zvw1m4g54micazkzjkyxsfcfvh",
8926 "depends": ["BSgenome", "Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "Rcpp", "Rsamtools", "S4Vectors", "Seqinfo", "data_table", "ggplot2", "gridBase", "impute", "matrixStats", "plotrix", "plyr", "readr", "reshape2", "rtracklayer", "seqPattern"]
8927 },
8928 "genomeIntervals": {
8929 "name": "genomeIntervals",
8930 "version": "1.66.0",
8931 "sha256": "0igfivmkfbd299gbrwabbfs8n1m79xy1irgsnsj89bw7xxmasxxa",
8932 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "intervals"]
8933 },
8934 "genomes": {
8935 "name": "genomes",
8936 "version": "3.40.0",
8937 "sha256": "1ygp7gcn791hkny17y01ycg193zf6aibab9493vs8w15k9zjv5h9",
8938 "depends": ["curl", "readr"]
8939 },
8940 "genomicInstability": {
8941 "name": "genomicInstability",
8942 "version": "1.16.0",
8943 "sha256": "0pbzh2a0m94bqshmkw5fgd9scsn82k3vfmk67hlpkfi36kj18ws0",
8944 "depends": ["SummarizedExperiment", "checkmate", "mixtools"]
8945 },
8946 "geomeTriD": {
8947 "name": "geomeTriD",
8948 "version": "1.4.0",
8949 "sha256": "0cpvbmdv7wbsd284kqxh621vm60b98slj52cj6nsrli77rz5nm06",
8950 "depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "InteractionSet", "MASS", "Matrix", "RANN", "S4Vectors", "Seqinfo", "aricode", "clue", "cluster", "dbscan", "future_apply", "htmlwidgets", "igraph", "plotrix", "progressr", "rgl", "rjson", "scales", "trackViewer"]
8951 },
8952 "gep2pep": {
8953 "name": "gep2pep",
8954 "version": "1.30.0",
8955 "sha256": "12ap7376fpr76hjamswca0h2z48k791gs8fmw5kba56ngsypr1f6",
8956 "depends": ["Biobase", "GSEABase", "XML", "digest", "foreach", "iterators", "repo", "rhdf5"]
8957 },
8958 "getDEE2": {
8959 "name": "getDEE2",
8960 "version": "1.20.0",
8961 "sha256": "0pqbyvj5063xn048x38yg9zpvzg82r4ksbmj4a0gx4cxpw2g4cyf",
8962 "depends": ["SummarizedExperiment", "htm2txt"]
8963 },
8964 "geva": {
8965 "name": "geva",
8966 "version": "1.18.0",
8967 "sha256": "0pj4dxfqkas5zd71310q32y4r5msd4984rrc2f6xaxhd8dip3cgs",
8968 "depends": ["dbscan", "fastcluster", "matrixStats"]
8969 },
8970 "geyser": {
8971 "name": "geyser",
8972 "version": "1.2.0",
8973 "sha256": "146avnl23jsn2r19r3ynqqrkkpsghkix738zbac9dqfz3yd7g44x",
8974 "depends": ["BiocStyle", "ComplexHeatmap", "DT", "SummarizedExperiment", "bslib", "dplyr", "ggbeeswarm", "ggplot2", "htmltools", "magrittr", "shiny", "tibble", "tidyr", "tidyselect"]
8975 },
8976 "gg4way": {
8977 "name": "gg4way",
8978 "version": "1.8.0",
8979 "sha256": "0v9hldgi84k99smaycrfq36simzs7dwfa5c2a3qf1dfbz9ia9ksl",
8980 "depends": ["DESeq2", "dplyr", "edgeR", "ggplot2", "ggrepel", "glue", "janitor", "limma", "magrittr", "purrr", "rlang", "scales", "stringr", "tibble", "tidyr"]
8981 },
8982 "ggbio": {
8983 "name": "ggbio",
8984 "version": "1.58.0",
8985 "sha256": "0wnscz1r9khbh6lha55025s5wkvs2i3z4v1cjz0v3gkgkva545ff",
8986 "depends": ["AnnotationDbi", "AnnotationFilter", "BSgenome", "Biobase", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Hmisc", "IRanges", "OrganismDbi", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "biovizBase", "ensembldb", "ggplot2", "gridExtra", "gtable", "reshape2", "rlang", "rtracklayer", "scales"]
8987 },
8988 "ggcyto": {
8989 "name": "ggcyto",
8990 "version": "1.38.0",
8991 "sha256": "0gpqwg8f2pwb9z9rjdmiy6x60zry2wwlf5xq44scv5dm6l2jfapw",
8992 "depends": ["RColorBrewer", "data_table", "flowCore", "flowWorkspace", "ggplot2", "gridExtra", "hexbin", "ncdfFlow", "plyr", "rlang", "scales"]
8993 },
8994 "ggkegg": {
8995 "name": "ggkegg",
8996 "version": "1.8.0",
8997 "sha256": "1imcszvrg3z9vsn63hnsdwyl35dspvxvmjd9rfrgz6w8v677firx",
8998 "depends": ["BiocFileCache", "XML", "data_table", "dplyr", "ggplot2", "ggraph", "gtable", "igraph", "magick", "patchwork", "shadowtext", "stringr", "tibble", "tidygraph"]
8999 },
9000 "ggmanh": {
9001 "name": "ggmanh",
9002 "version": "1.14.0",
9003 "sha256": "0r9v6ss9hp9y729vcw9c4sw7diclv337z38hp9fxz4ys3vp68ck2",
9004 "depends": ["RColorBrewer", "SeqArray", "dplyr", "gdsfmt", "ggplot2", "ggrepel", "magrittr", "paletteer", "pals", "rlang", "scales", "tidyr"]
9005 },
9006 "ggmsa": {
9007 "name": "ggmsa",
9008 "version": "1.16.0",
9009 "sha256": "0wf0rvqn7q716hp3m53mc425rzjmhj14ajz0by3rx0ix357y7xg2",
9010 "depends": ["Biostrings", "R4RNA", "RColorBrewer", "aplot", "dplyr", "ggforce", "ggfun", "ggplot2", "ggtree", "magrittr", "seqmagick", "tidyr"]
9011 },
9012 "ggsc": {
9013 "name": "ggsc",
9014 "version": "1.8.0",
9015 "sha256": "1bxkf3blwvgpwa3s861i4mg6x6ny6kq27wgn9abpdi2k12545m8s",
9016 "depends": ["RColorBrewer", "Rcpp", "RcppArmadillo", "RcppParallel", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "cli", "dplyr", "ggfun", "ggplot2", "rlang", "scales", "scattermore", "tibble", "tidydr", "tidyr", "yulab_utils"]
9017 },
9018 "ggseqalign": {
9019 "name": "ggseqalign",
9020 "version": "1.4.0",
9021 "sha256": "013a1gda7hwmyis0zs4ajaz42phwlnji2lqynasysy764nknlznh",
9022 "depends": ["dplyr", "ggplot2", "pwalign"]
9023 },
9024 "ggspavis": {
9025 "name": "ggspavis",
9026 "version": "1.16.0",
9027 "sha256": "1xnmajaxc1k3am1p2fkf56l6pdv5ayn0pqivyz3x7fp2yix0wxn4",
9028 "depends": ["RColorBrewer", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "ggplot2", "ggrepel", "ggside", "scales"]
9029 },
9030 "ggtree": {
9031 "name": "ggtree",
9032 "version": "4.0.1",
9033 "sha256": "0vk1l1jmw4acgmpmgcx0pz7j39yp391mba8q1xnc8rmlfw51qvxj",
9034 "depends": ["ape", "aplot", "cli", "dplyr", "ggfun", "ggiraph", "ggplot2", "magrittr", "purrr", "rlang", "scales", "tidyr", "tidytree", "treeio", "yulab_utils"]
9035 },
9036 "ggtreeDendro": {
9037 "name": "ggtreeDendro",
9038 "version": "1.12.0",
9039 "sha256": "0pc5lrc0p5d1yr6yrazz82z87h0zix8an19vjncw5pp3gyjs2z5g",
9040 "depends": ["ggplot2", "ggtree", "tidytree"]
9041 },
9042 "ggtreeExtra": {
9043 "name": "ggtreeExtra",
9044 "version": "1.20.0",
9045 "sha256": "086j86xxf8xn4kqkgs6b3r2zyrngi2inhhabj47c5mcyxy7cbddz",
9046 "depends": ["cli", "ggnewscale", "ggplot2", "ggtree", "magrittr", "rlang", "tidytree"]
9047 },
9048 "ggtreeSpace": {
9049 "name": "ggtreeSpace",
9050 "version": "1.6.0",
9051 "sha256": "0yy7hap224hznl4g9nj0bn0rf57snwbrw419b14l2h5rg5gi5fc5",
9052 "depends": ["GGally", "ape", "dplyr", "ggplot2", "ggtree", "interp", "phytools", "rlang", "tibble", "tidyr", "tidyselect"]
9053 },
9054 "ginmappeR": {
9055 "name": "ginmappeR",
9056 "version": "1.6.0",
9057 "sha256": "0x85rkhs46bln7bd51lz1vqx4nd3qg83vkvg1bnb9755k7rz3x58",
9058 "depends": ["KEGGREST", "UniProt_ws", "XML", "cachem", "httr", "jsonlite", "memoise", "rentrez", "rvest"]
9059 },
9060 "glmGamPoi": {
9061 "name": "glmGamPoi",
9062 "version": "1.22.0",
9063 "sha256": "1i9sy6a47ynb3lghi2mghk6mvgbr3kny6c3n208lxqb4b7si1f1z",
9064 "depends": ["BiocGenerics", "DelayedArray", "DelayedMatrixStats", "HDF5Array", "Matrix", "MatrixGenerics", "Rcpp", "RcppArmadillo", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "assorthead", "beachmat", "matrixStats", "rlang", "vctrs"]
9065 },
9066 "glmSparseNet": {
9067 "name": "glmSparseNet",
9068 "version": "1.28.0",
9069 "sha256": "0qxss4zfdds590ldfdrhn8c6brd9z8pknp462jw2p0bjz8wvm8lp",
9070 "depends": ["Matrix", "MultiAssayExperiment", "SummarizedExperiment", "TCGAutils", "biomaRt", "checkmate", "dplyr", "forcats", "futile_logger", "ggplot2", "glmnet", "glue", "httr", "lifecycle", "readr", "rlang", "survminer"]
9071 },
9072 "globalSeq": {
9073 "name": "globalSeq",
9074 "version": "1.38.0",
9075 "sha256": "0i6i0hj733z2d8xqwg1nm1dyp3h5p32rdxmnxp4qgzwk96vz8b51",
9076 "depends": []
9077 },
9078 "globaltest": {
9079 "name": "globaltest",
9080 "version": "5.64.0",
9081 "sha256": "064ffcfk9sxmjii1pyl5nsbdr116blvvi3l46chvrvfjjd5z8sfn",
9082 "depends": ["AnnotationDbi", "Biobase", "annotate", "survival"]
9083 },
9084 "gmapR": {
9085 "name": "gmapR",
9086 "version": "1.51.1",
9087 "sha256": "0y2gh8mqkdcciag09vb1fz9i32d8j3hj3frji7j644xpd2hr12ks",
9088 "depends": ["BSgenome", "Biobase", "BiocGenerics", "BiocIO", "BiocParallel", "Biostrings", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "VariantAnnotation", "rtracklayer"]
9089 },
9090 "gmoviz": {
9091 "name": "gmoviz",
9092 "version": "1.22.0",
9093 "sha256": "0ggy20alp14129d477zywhjj3jl8396wc1sfc8k0gb3hnzb08x9f",
9094 "depends": ["BiocGenerics", "Biostrings", "ComplexHeatmap", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "circlize", "colorspace", "gridBase", "pracma", "rtracklayer"]
9095 },
9096 "goProfiles": {
9097 "name": "goProfiles",
9098 "version": "1.72.0",
9099 "sha256": "0wkkcwr9cz0a2vlwal1i33zr1m5m0s8h9nal2jp97yhfr82c30hm",
9100 "depends": ["AnnotationDbi", "Biobase", "CompQuadForm", "GO_db", "stringr"]
9101 },
9102 "goSTAG": {
9103 "name": "goSTAG",
9104 "version": "1.34.0",
9105 "sha256": "1c1n7q1f52x6sd1l3772zq32bvkbwa4ffa82c09laca2hmydfaws",
9106 "depends": ["AnnotationDbi", "GO_db", "biomaRt", "memoise"]
9107 },
9108 "goSorensen": {
9109 "name": "goSorensen",
9110 "version": "1.12.0",
9111 "sha256": "0md7w06mlnalcfpmsg4b3x3cmvy8xx8smwvq2vfvp3fyfghx1q9y",
9112 "depends": ["clusterProfiler", "goProfiles", "org_Hs_eg_db", "stringr"]
9113 },
9114 "goTools": {
9115 "name": "goTools",
9116 "version": "1.84.0",
9117 "sha256": "01jgq12iskpdp8s4sf3ndk16n99ypwrfw61l8jjfvlla2nw73lpa",
9118 "depends": ["AnnotationDbi", "GO_db"]
9119 },
9120 "goseq": {
9121 "name": "goseq",
9122 "version": "1.62.0",
9123 "sha256": "1p8vbisgdv4cmb47kr6x7nycm3j9sf3y5ib6lcq2i9y0c49ddrz2",
9124 "depends": ["AnnotationDbi", "BiasedUrn", "BiocGenerics", "GO_db", "GenomicFeatures", "Seqinfo", "geneLenDataBase", "mgcv", "rtracklayer"]
9125 },
9126 "gpls": {
9127 "name": "gpls",
9128 "version": "1.82.0",
9129 "sha256": "0kn2vxsl379qh2gs7am46fzn2c44kgj46n6g49b94a7vgjrwm2qi",
9130 "depends": []
9131 },
9132 "graper": {
9133 "name": "graper",
9134 "version": "1.26.0",
9135 "sha256": "0n9z7ni769yylrq22dp2saka55ymm178ind9dvr7h3bhrb9v34kf",
9136 "depends": ["BH", "Matrix", "Rcpp", "RcppArmadillo", "cowplot", "ggplot2", "matrixStats"]
9137 },
9138 "graph": {
9139 "name": "graph",
9140 "version": "1.88.0",
9141 "sha256": "1sxn2h83j3qawp9jwpg63g50px2gk5dmlmdy6a7jwx3hb44sppbm",
9142 "depends": ["BiocGenerics"]
9143 },
9144 "graphite": {
9145 "name": "graphite",
9146 "version": "1.56.0",
9147 "sha256": "0481mc4h33n8kky5qph2isjibfclcc694k8pxlf6aijq6hbqxc78",
9148 "depends": ["AnnotationDbi", "dir_expiry", "graph", "httr", "lifecycle", "purrr", "rappdirs", "rlang"]
9149 },
9150 "groHMM": {
9151 "name": "groHMM",
9152 "version": "1.44.0",
9153 "sha256": "0xdma6zx4sdkqfbs4v8ipxa38xywmdlgbdmihl0zysp6nxmm1jvg",
9154 "depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "Seqinfo", "rtracklayer"]
9155 },
9156 "gscreend": {
9157 "name": "gscreend",
9158 "version": "1.24.0",
9159 "sha256": "0gf3mv57c4f93xq75fyd9xqzkwn8yrz5x4sxpr8f5bxxriwdyd55",
9160 "depends": ["BiocParallel", "SummarizedExperiment", "fGarch", "nloptr"]
9161 },
9162 "gsean": {
9163 "name": "gsean",
9164 "version": "1.30.0",
9165 "sha256": "07k0b722i33dyrw65iv0ami4kxjxd7gzcnrn10yk9yam187g0hnp",
9166 "depends": ["PPInfer", "fgsea"]
9167 },
9168 "gtrellis": {
9169 "name": "gtrellis",
9170 "version": "1.42.0",
9171 "sha256": "0lbqzdfz7ylw066ng01vvm5azvnjfxhhbfcjk6y0l5xbs2c5ckac",
9172 "depends": ["GenomicRanges", "GetoptLong", "IRanges", "circlize"]
9173 },
9174 "gwascat": {
9175 "name": "gwascat",
9176 "version": "2.42.0",
9177 "sha256": "1v5z4fmwgs3swvpa09y986sracz0nsggq8s9hp1nmwb9a9grw8px",
9178 "depends": ["AnnotationDbi", "AnnotationHub", "BiocFileCache", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "VariantAnnotation", "data_table", "readr", "snpStats", "tibble"]
9179 },
9180 "gwasurvivr": {
9181 "name": "gwasurvivr",
9182 "version": "1.28.0",
9183 "sha256": "0p6h5594ysscazipf5va545mj36vkbw4dprqsqhg21ih411bqk9r",
9184 "depends": ["GWASTools", "SNPRelate", "SummarizedExperiment", "VariantAnnotation", "matrixStats", "survival"]
9185 },
9186 "gypsum": {
9187 "name": "gypsum",
9188 "version": "1.6.0",
9189 "sha256": "0wn6mxdkr1msys9n3799qplmvpr9b8qjzhw1magahndidsylz8pf",
9190 "depends": ["filelock", "httr2", "jsonlite", "rappdirs"]
9191 },
9192 "h5mread": {
9193 "name": "h5mread",
9194 "version": "1.2.0",
9195 "sha256": "01iykyb36cnzbs7xf3jcgnndnib4pk0w4wg8scy1rnagcy89yp2a",
9196 "depends": ["BiocGenerics", "IRanges", "Rhdf5lib", "S4Arrays", "S4Vectors", "SparseArray", "rhdf5", "rhdf5filters"]
9197 },
9198 "h5vc": {
9199 "name": "h5vc",
9200 "version": "2.44.0",
9201 "sha256": "0a2ali36kigkn65a5gb11xid2c28432l3hvdkjf27h4z7jl1cv16",
9202 "depends": ["BatchJobs", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "Rhtslib", "Rsamtools", "S4Vectors", "abind", "ggplot2", "gridExtra", "h5vcData", "reshape", "rhdf5"]
9203 },
9204 "hapFabia": {
9205 "name": "hapFabia",
9206 "version": "1.52.0",
9207 "sha256": "1asxg02xrvqsx1vnyh14nd3xfsk8q0fi95w65c97dknrnhy1c2wl",
9208 "depends": ["Biobase", "fabia"]
9209 },
9210 "hdxmsqc": {
9211 "name": "hdxmsqc",
9212 "version": "1.6.0",
9213 "sha256": "03r8k913p3f4024jr6r5nd872ixxqfkhwngi2g930vw4j53y04k3",
9214 "depends": ["BiocStyle", "MsCoreUtils", "QFeatures", "S4Vectors", "Spectra", "dplyr", "ggplot2", "knitr", "tidyr"]
9215 },
9216 "heatmaps": {
9217 "name": "heatmaps",
9218 "version": "1.34.0",
9219 "sha256": "1656vvcqjpiwibxqvlx0ysalnc53xifkh9ypb7j3prdpc7k243nx",
9220 "depends": ["BiocGenerics", "Biostrings", "EBImage", "GenomicRanges", "IRanges", "KernSmooth", "Matrix", "RColorBrewer", "Seqinfo", "plotrix"]
9221 },
9222 "hermes": {
9223 "name": "hermes",
9224 "version": "1.14.0",
9225 "sha256": "0ylqg4jhsv1qqd2663jskn2r1m6f79snx0pisn8i3p6yh7n2cpi8",
9226 "depends": ["Biobase", "BiocGenerics", "ComplexHeatmap", "DESeq2", "EnvStats", "GenomicRanges", "IRanges", "MultiAssayExperiment", "R6", "Rdpack", "S4Vectors", "SummarizedExperiment", "assertthat", "biomaRt", "checkmate", "circlize", "dplyr", "edgeR", "forcats", "ggfortify", "ggplot2", "ggrepel", "limma", "magrittr", "matrixStats", "purrr", "rlang", "tidyr"]
9227 },
9228 "hicVennDiagram": {
9229 "name": "hicVennDiagram",
9230 "version": "1.8.0",
9231 "sha256": "11fc1ykmk0g5gpjxi195hqw2cxn212asarmj0pjcvjzh30k4i12d",
9232 "depends": ["ComplexUpset", "GenomicRanges", "IRanges", "InteractionSet", "S4Vectors", "Seqinfo", "eulerr", "ggplot2", "htmlwidgets", "reshape2", "rtracklayer", "svglite"]
9233 },
9234 "hierGWAS": {
9235 "name": "hierGWAS",
9236 "version": "1.40.0",
9237 "sha256": "0l58pcyhgxnc56j9gbp6dlw97apa2r67xcvli76ldk1mwpf0hxnb",
9238 "depends": ["fastcluster", "fmsb", "glmnet"]
9239 },
9240 "hierinf": {
9241 "name": "hierinf",
9242 "version": "1.28.0",
9243 "sha256": "1k5i6k6wbz43mf7nsg48idykxr7mi42nc6qmsmpvcj863nkdhm89",
9244 "depends": ["fmsb", "glmnet"]
9245 },
9246 "hmdbQuery": {
9247 "name": "hmdbQuery",
9248 "version": "1.30.0",
9249 "sha256": "1zasi8mb3pi5yxz2w7v7b5zwmkb8syl0ir41gafz0mq9pab3yj3a",
9250 "depends": ["S4Vectors", "XML"]
9251 },
9252 "hoodscanR": {
9253 "name": "hoodscanR",
9254 "version": "1.8.0",
9255 "sha256": "1fxf2zixbcz5g6nncgkdbiz4gb4iv2d085jz1li8cd6l2fxsyab1",
9256 "depends": ["ComplexHeatmap", "RANN", "Rcpp", "SpatialExperiment", "SummarizedExperiment", "circlize", "ggplot2", "knitr", "rlang", "rmarkdown", "scico"]
9257 },
9258 "hopach": {
9259 "name": "hopach",
9260 "version": "2.70.0",
9261 "sha256": "00xbm6lld8w711x226rms020zpn0wi2ri7q59iwg4w4xmdjqq8xh",
9262 "depends": ["Biobase", "BiocGenerics", "cluster"]
9263 },
9264 "hpar": {
9265 "name": "hpar",
9266 "version": "1.52.0",
9267 "sha256": "1png19c1dr2banwc07azwz0rxrkw9820vkj8362syv4dryphx3c5",
9268 "depends": ["ExperimentHub"]
9269 },
9270 "hummingbird": {
9271 "name": "hummingbird",
9272 "version": "1.20.0",
9273 "sha256": "1aiv1aavc6al6hv05828alqmnf6q8af126aa3na3m0zvfjvaf2fa",
9274 "depends": ["GenomicRanges", "IRanges", "Rcpp", "SummarizedExperiment"]
9275 },
9276 "hyperdraw": {
9277 "name": "hyperdraw",
9278 "version": "1.62.0",
9279 "sha256": "07k1vkqilvy83ijawlw038dqq89plmjv5paz6k1mjif8f730lkgl",
9280 "depends": ["Rgraphviz", "graph", "hypergraph"]
9281 },
9282 "hypergraph": {
9283 "name": "hypergraph",
9284 "version": "1.82.0",
9285 "sha256": "0326ypzscnv2xpyvpigwsanp065wiply8w6ydg1gvryc1in5dlbm",
9286 "depends": ["graph"]
9287 },
9288 "iASeq": {
9289 "name": "iASeq",
9290 "version": "1.54.0",
9291 "sha256": "04rxy267kymkbiqjv818hhb8lxh1l4hk9pxw4psr0q527iz6rrj0",
9292 "depends": []
9293 },
9294 "iBBiG": {
9295 "name": "iBBiG",
9296 "version": "1.54.0",
9297 "sha256": "1m9kdnpa34a9y3sdh7a53clpq9zc4cl5zx7rnrsm0998bfrbwwpk",
9298 "depends": ["ade4", "biclust", "xtable"]
9299 },
9300 "iBMQ": {
9301 "name": "iBMQ",
9302 "version": "1.50.0",
9303 "sha256": "1n05qnr3kfnbm5ns2kich5n9xbhy7rhlyfwx001mbinhihwf7cyb",
9304 "depends": ["Biobase", "ggplot2"]
9305 },
9306 "iCARE": {
9307 "name": "iCARE",
9308 "version": "1.38.0",
9309 "sha256": "0rj33c22rssznqi8jayg2lnhx2adwina6ic2nswmq1kvd9zcdf6x",
9310 "depends": ["Hmisc", "gtools", "plotrix"]
9311 },
9312 "iCNV": {
9313 "name": "iCNV",
9314 "version": "1.30.0",
9315 "sha256": "0hkxikinkbpdgg7l7n0v0lyazd09i2n92dx0gakfvrd7bn3v6dql",
9316 "depends": ["CODEX", "data_table", "dplyr", "fields", "ggplot2", "rlang", "tidyr", "truncnorm"]
9317 },
9318 "iCOBRA": {
9319 "name": "iCOBRA",
9320 "version": "1.38.0",
9321 "sha256": "0fyls8ckgbkh71ik9m475nlf51p1giby6d5qrrjjzg59bwhbksjm",
9322 "depends": ["DT", "ROCR", "UpSetR", "dplyr", "ggplot2", "limma", "reshape2", "rlang", "scales", "shiny", "shinyBS", "shinydashboard"]
9323 },
9324 "iCheck": {
9325 "name": "iCheck",
9326 "version": "1.40.0",
9327 "sha256": "0f9vhavj849syn1kdsiij120s3w97y7sqiv4qnpyp5r1s4k75bfl",
9328 "depends": ["Biobase", "GeneSelectMMD", "MASS", "affy", "gplots", "limma", "lmtest", "lumi", "preprocessCore", "randomForest", "rgl", "scatterplot3d"]
9329 },
9330 "iChip": {
9331 "name": "iChip",
9332 "version": "1.64.0",
9333 "sha256": "1hkgxj54nw4g3fal6r94nkr3j4ixv0c5wi6g2y7hx5bx6mmablmj",
9334 "depends": ["limma"]
9335 },
9336 "iClusterPlus": {
9337 "name": "iClusterPlus",
9338 "version": "1.46.0",
9339 "sha256": "1bqi0hckfphs7ixb0mh67a8q9q43fxs3n36bvgrhgpari4gl9axz",
9340 "depends": []
9341 },
9342 "iGC": {
9343 "name": "iGC",
9344 "version": "1.40.0",
9345 "sha256": "0jli4qyzyypkk43kk58122dmibjnb09gpks1yfgqpqczna2h46xc",
9346 "depends": ["data_table", "plyr"]
9347 },
9348 "iModMix": {
9349 "name": "iModMix",
9350 "version": "1.0.0",
9351 "sha256": "0kif27wq4m1qsrv34zla4w0wlmdlsi6z8v54mz10p101lrvppnfk",
9352 "depends": ["ComplexHeatmap", "DT", "ExperimentHub", "RColorBrewer", "SummarizedExperiment", "WGCNA", "config", "corrplot", "cowplot", "dplyr", "dynamicTreeCut", "ggplot2", "glassoFast", "golem", "httr", "iModMixData", "impute", "purrr", "shiny", "shinyBS", "stringr", "tidyr", "visNetwork"]
9353 },
9354 "iSEE": {
9355 "name": "iSEE",
9356 "version": "2.22.0",
9357 "sha256": "1g4mcvc7qb04cy307lhd11pxshq81s84b87dcyylqasibhxmbjyp",
9358 "depends": ["BiocGenerics", "ComplexHeatmap", "DT", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "circlize", "colourpicker", "ggplot2", "ggrepel", "igraph", "listviewer", "mgcv", "rintrojs", "shiny", "shinyAce", "shinyWidgets", "shinydashboard", "shinyjs", "vipor", "viridisLite"]
9359 },
9360 "iSEEde": {
9361 "name": "iSEEde",
9362 "version": "1.8.0",
9363 "sha256": "0csm53kjgdg6ca42w36gfcs2c8x4bvl06ngnhqaa1hg9bx3nn4bl",
9364 "depends": ["DESeq2", "S4Vectors", "SummarizedExperiment", "edgeR", "iSEE", "shiny"]
9365 },
9366 "iSEEfier": {
9367 "name": "iSEEfier",
9368 "version": "1.6.0",
9369 "sha256": "0vqrm2zm8dmrrgj7lh8m8kx6h97ii6f39m3mi7i2h1nklihkz54s",
9370 "depends": ["BiocBaseUtils", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "iSEE", "iSEEu", "igraph", "rlang", "visNetwork"]
9371 },
9372 "iSEEhex": {
9373 "name": "iSEEhex",
9374 "version": "1.12.0",
9375 "sha256": "1dm7j0159c52a4smhwq18da78fl8rfzibvr5dq2rmdgfvk3xg27p",
9376 "depends": ["SummarizedExperiment", "ggplot2", "hexbin", "iSEE", "shiny"]
9377 },
9378 "iSEEhub": {
9379 "name": "iSEEhub",
9380 "version": "1.12.0",
9381 "sha256": "0gjz3r0slzzdsdycnq6vlcai4l3qmw4xx25b0id4va5224j1pbld",
9382 "depends": ["AnnotationHub", "BiocManager", "DT", "ExperimentHub", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "iSEE", "rintrojs", "shiny", "shinydashboard", "shinyjs"]
9383 },
9384 "iSEEindex": {
9385 "name": "iSEEindex",
9386 "version": "1.8.0",
9387 "sha256": "1id3hbc24lvk4lhfm2l75n0hd1l37hl6v70cbbb8kh6kdfmhidy3",
9388 "depends": ["BiocFileCache", "DT", "SingleCellExperiment", "SummarizedExperiment", "iSEE", "paws_storage", "rintrojs", "shiny", "shinydashboard", "shinyjs", "stringr", "urltools"]
9389 },
9390 "iSEEpathways": {
9391 "name": "iSEEpathways",
9392 "version": "1.8.0",
9393 "sha256": "06dy4s9sn2pm2q8xh20p83nv1km1f6xcp3radxq8cwy4jw3j5rzw",
9394 "depends": ["S4Vectors", "SummarizedExperiment", "ggplot2", "iSEE", "shiny", "shinyWidgets"]
9395 },
9396 "iSEEtree": {
9397 "name": "iSEEtree",
9398 "version": "1.4.0",
9399 "sha256": "1j5p859lsjjv831wkhdmkwhw61g3yw1ynayz1ww8vbh0b3kchqa0",
9400 "depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "ggplot2", "ggtree", "iSEE", "mia", "miaViz", "purrr", "shiny", "shinyWidgets", "tidygraph"]
9401 },
9402 "iSEEu": {
9403 "name": "iSEEu",
9404 "version": "1.22.0",
9405 "sha256": "1gdbqff3j3s8793wn26c59zms1vahvskvhka1rzp5fqd7i09a9id",
9406 "depends": ["DT", "IRanges", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "colourpicker", "ggplot2", "iSEE", "iSEEhex", "shiny", "shinyAce"]
9407 },
9408 "iSeq": {
9409 "name": "iSeq",
9410 "version": "1.62.0",
9411 "sha256": "118g683pbn713g5iqrdsipbfnwi73kn80pq0ir8ignx7jn36vp12",
9412 "depends": []
9413 },
9414 "iasva": {
9415 "name": "iasva",
9416 "version": "1.28.0",
9417 "sha256": "0lkyfgwr2prar7gzf1dn8a8q81d3al2hq9pyhjcn7ghpjpwrw1mx",
9418 "depends": ["BiocParallel", "SummarizedExperiment", "cluster", "irlba"]
9419 },
9420 "ibh": {
9421 "name": "ibh",
9422 "version": "1.58.0",
9423 "sha256": "0nljjvapwfdy07w3zg35znyh2k645bn8psfnl84dxr4hmq3g51ra",
9424 "depends": ["simpIntLists"]
9425 },
9426 "icetea": {
9427 "name": "icetea",
9428 "version": "1.28.0",
9429 "sha256": "0f0w294bqmrh4a5gsyfiv9228734cv5ybskazgzsnjvbndlhk69p",
9430 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "DESeq2", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "ShortRead", "SummarizedExperiment", "TxDb_Dmelanogaster_UCSC_dm6_ensGene", "VariantAnnotation", "csaw", "edgeR", "ggplot2", "limma", "rtracklayer"]
9431 },
9432 "ideal": {
9433 "name": "ideal",
9434 "version": "2.4.0",
9435 "sha256": "1h8yvw4rwsbv30vny8rw6df99v5mj7l6cbm5fgxgl29hlb1hcd6j",
9436 "depends": ["AnnotationDbi", "BiocParallel", "DESeq2", "DT", "GO_db", "GOstats", "GenomicRanges", "IHW", "IRanges", "S4Vectors", "SummarizedExperiment", "UpSetR", "base64enc", "dplyr", "ggplot2", "ggrepel", "goseq", "gplots", "heatmaply", "knitr", "limma", "mosdef", "pheatmap", "plotly", "rentrez", "rintrojs", "rlang", "rmarkdown", "shiny", "shinyAce", "shinyBS", "shinydashboard", "stringr", "topGO"]
9437 },
9438 "idiogram": {
9439 "name": "idiogram",
9440 "version": "1.86.0",
9441 "sha256": "0d9m9x7gsx1ywcf1pk7ssp4gal29i833qjaqq4bx1ihrlr75nf06",
9442 "depends": ["Biobase", "annotate", "plotrix"]
9443 },
9444 "idpr": {
9445 "name": "idpr",
9446 "version": "1.20.0",
9447 "sha256": "0mbk2zpmjksp6a59wm4bhf9k9v9zblyydjj231zpga6vslybx3g3",
9448 "depends": ["Biostrings", "dplyr", "ggplot2", "jsonlite", "magrittr", "plyr", "rlang"]
9449 },
9450 "idr2d": {
9451 "name": "idr2d",
9452 "version": "1.24.0",
9453 "sha256": "0vm8ax9f6q8zzwggrcxy5gf62ikfhlp2mybr9zg74w99zgbyabx6",
9454 "depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "dplyr", "futile_logger", "ggplot2", "idr", "magrittr", "reticulate", "scales", "stringr"]
9455 },
9456 "igblastr": {
9457 "name": "igblastr",
9458 "version": "1.0.0",
9459 "sha256": "1vjlqjiczdfq0wdbjjb3knpa3xqibqz08r06qyqvnvvs533axl5r",
9460 "depends": ["Biostrings", "GenomeInfoDb", "IRanges", "R_utils", "S4Vectors", "curl", "httr", "jsonlite", "rvest", "tibble", "xml2", "xtable"]
9461 },
9462 "igvR": {
9463 "name": "igvR",
9464 "version": "1.30.0",
9465 "sha256": "0ia9vx40djl3lmlpirp7knjygd2zsimpn471ydjqw09bamxyin8k",
9466 "depends": ["BiocGenerics", "BrowserViz", "GenomicAlignments", "GenomicRanges", "RColorBrewer", "VariantAnnotation", "httpuv", "httr", "rtracklayer"]
9467 },
9468 "igvShiny": {
9469 "name": "igvShiny",
9470 "version": "1.6.0",
9471 "sha256": "05xd8ydk4z4xqgdw626jk3cfnbk9f9nv6cv6n4i0wg9vy6r87wza",
9472 "depends": ["BiocGenerics", "GenomeInfoDbData", "GenomicRanges", "checkmate", "futile_logger", "htmlwidgets", "httr", "jsonlite", "randomcoloR", "shiny"]
9473 },
9474 "illuminaio": {
9475 "name": "illuminaio",
9476 "version": "0.52.0",
9477 "sha256": "0hcn43ipy0dijr3kqdcn8hpv3a5y1xmg8d7aa2hd7i7ipjh5bfhf",
9478 "depends": ["base64"]
9479 },
9480 "imageTCGA": {
9481 "name": "imageTCGA",
9482 "version": "1.2.0",
9483 "sha256": "15wd10s1xcmkfqyd92m25lgcy6hnizrhvl7vnajgrp0g512s7jg6",
9484 "depends": ["DT", "bsicons", "bslib", "clipr", "dplyr", "ggplot2", "leaflet", "rlang", "shiny", "tidyr", "viridis"]
9485 },
9486 "imcRtools": {
9487 "name": "imcRtools",
9488 "version": "1.16.0",
9489 "sha256": "07a5p6r5rycp55gs6iaqkqy7wgvajs5x0806qc3fidg0v118qfp0",
9490 "depends": ["BiocNeighbors", "BiocParallel", "DT", "EBImage", "MatrixGenerics", "RTriangle", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "abind", "concaveman", "cytomapper", "data_table", "distances", "dplyr", "ggplot2", "ggraph", "igraph", "magrittr", "pheatmap", "readr", "rlang", "scuttle", "sf", "stringr", "tidygraph", "tidyselect", "viridis", "vroom"]
9491 },
9492 "immApex": {
9493 "name": "immApex",
9494 "version": "1.4.0",
9495 "sha256": "0xwj70fgfhqilc4clm54lj7h1q1742339z44nwbl1sjh049x388f",
9496 "depends": ["Matrix", "Rcpp", "SingleCellExperiment", "hash", "httr", "matrixStats", "rvest", "stringr"]
9497 },
9498 "immunoClust": {
9499 "name": "immunoClust",
9500 "version": "1.42.0",
9501 "sha256": "1l6iyf23kvk02zl49hq2y761hg102gv4vf6xzgck6xgp80d2cl9d",
9502 "depends": ["flowCore", "lattice"]
9503 },
9504 "immunogenViewer": {
9505 "name": "immunogenViewer",
9506 "version": "1.4.0",
9507 "sha256": "03k4sc032nn5siciv41310hcfs7dfjgps50jprpgjbmx3z2zvwgj",
9508 "depends": ["UniProt_ws", "ggplot2", "httr", "jsonlite", "patchwork"]
9509 },
9510 "immunotation": {
9511 "name": "immunotation",
9512 "version": "1.18.0",
9513 "sha256": "031gl7sckwkrdhnzbadnnlxqfi48nc2wm9x2zdzw6qds39hg8ay1",
9514 "depends": ["curl", "ggplot2", "maps", "ontologyIndex", "readr", "rlang", "rvest", "stringr", "tidyr", "xml2"]
9515 },
9516 "impute": {
9517 "name": "impute",
9518 "version": "1.84.0",
9519 "sha256": "1lcyfwgs7pq1qwnglgqp7gs3rxymxgv08jmgq56xd1qjr9rz4dl6",
9520 "depends": []
9521 },
9522 "infercnv": {
9523 "name": "infercnv",
9524 "version": "1.26.0",
9525 "sha256": "1gkgvkj06kpqwl573d5l8d9bsdp7nq61m688ma9d2fx6wg4a9r7l",
9526 "depends": ["BiocGenerics", "HiddenMarkov", "Matrix", "RANN", "RColorBrewer", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "ape", "argparse", "caTools", "coda", "coin", "digest", "doParallel", "dplyr", "edgeR", "fastcluster", "fitdistrplus", "foreach", "futile_logger", "future", "ggplot2", "gplots", "gridExtra", "igraph", "parallelDist", "phyclust", "reshape2", "rjags", "tidyr"]
9527 },
9528 "infinityFlow": {
9529 "name": "infinityFlow",
9530 "version": "1.20.0",
9531 "sha256": "010wv8nm1hjpr7f2y1z3bv7mbjbzlr84id7qmmhgkp6b0gmkwmgp",
9532 "depends": ["Biobase", "flowCore", "generics", "gtools", "matlab", "pbapply", "png", "raster", "uwot", "xgboost"]
9533 },
9534 "intansv": {
9535 "name": "intansv",
9536 "version": "1.50.0",
9537 "sha256": "1zmb28d8zkg58d3yrbgj9aqac6zyr9l03gryyxsz2yadwkngpyh4",
9538 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "ggbio", "plyr"]
9539 },
9540 "interacCircos": {
9541 "name": "interacCircos",
9542 "version": "1.20.0",
9543 "sha256": "12nc76sgidbak7dwhjxrzjzc07yi6jn44g7zvaq1mld93i0hds08",
9544 "depends": ["RColorBrewer", "htmlwidgets", "plyr"]
9545 },
9546 "interactiveDisplay": {
9547 "name": "interactiveDisplay",
9548 "version": "1.48.0",
9549 "sha256": "02amr55nk6jx059a0shrwpnzkgcdfsr2x8k975j7x9y0nwsj6l94",
9550 "depends": ["AnnotationDbi", "BiocGenerics", "Category", "RColorBrewer", "XML", "ggplot2", "gridSVG", "interactiveDisplayBase", "plyr", "reshape2", "shiny"]
9551 },
9552 "interactiveDisplayBase": {
9553 "name": "interactiveDisplayBase",
9554 "version": "1.48.0",
9555 "sha256": "0slmb7cd9sn0146r1ad0cnaiihh7vh22fx41w7zdnq8c5nykkhad",
9556 "depends": ["BiocGenerics", "DT", "shiny"]
9557 },
9558 "ipdDb": {
9559 "name": "ipdDb",
9560 "version": "1.28.0",
9561 "sha256": "13w0zgpcfaj2mradn0s95yszlf97b4sp7k4zzjjzfxfzi1xn8q7v",
9562 "depends": ["AnnotationDbi", "AnnotationHub", "Biostrings", "DBI", "GenomicRanges", "IRanges", "RSQLite", "assertthat"]
9563 },
9564 "iscream": {
9565 "name": "iscream",
9566 "version": "1.0.0",
9567 "sha256": "19azxk53w3nnbjh54hzmznk1ilgck5i6m1m47wl7456fwkay6d3x",
9568 "depends": ["Matrix", "Rcpp", "RcppArmadillo", "RcppProgress", "RcppSpdlog", "Rhtslib", "data_table", "parallelly", "pbapply", "stringfish"]
9569 },
9570 "islify": {
9571 "name": "islify",
9572 "version": "1.2.0",
9573 "sha256": "0n8585c27fl6zbhwl12nk8n9cc8vchp43rkh2vfmp42w6nslfcm5",
9574 "depends": ["Matrix", "RBioFormats", "abind", "autothresholdr", "dbscan", "png", "tiff"]
9575 },
9576 "isobar": {
9577 "name": "isobar",
9578 "version": "1.56.0",
9579 "sha256": "1yckivblgrd80j3i186raawlahdm8akkrmmjc8xckcbld4afls0v",
9580 "depends": ["Biobase", "biomaRt", "distr", "ggplot2", "plyr"]
9581 },
9582 "iterativeBMA": {
9583 "name": "iterativeBMA",
9584 "version": "1.68.0",
9585 "sha256": "1ja588rr6zmghfgi5f4r7hqnh94siw72n90z76wdivw22y90v57p",
9586 "depends": ["BMA", "Biobase", "leaps"]
9587 },
9588 "iterativeBMAsurv": {
9589 "name": "iterativeBMAsurv",
9590 "version": "1.68.0",
9591 "sha256": "0gqnsy9q43h7brc47xsvxrwmnagvi91pici0xxjsjhbvby5z76qg",
9592 "depends": ["BMA", "leaps", "survival"]
9593 },
9594 "ivygapSE": {
9595 "name": "ivygapSE",
9596 "version": "1.32.0",
9597 "sha256": "0b9y6iznlpf77dy61hrnz6nhcsr2h8hzw65waqwwwvbwh61n69z8",
9598 "depends": ["S4Vectors", "SummarizedExperiment", "UpSetR", "ggplot2", "hwriter", "plotly", "shiny", "survival", "survminer"]
9599 },
9600 "jazzPanda": {
9601 "name": "jazzPanda",
9602 "version": "1.2.0",
9603 "sha256": "0bkzi2x4xlaqwn1wjrkmf4vbnqbcqkyvs9mwkxrh5rwg8dq1znw3",
9604 "depends": ["BiocParallel", "BumpyMatrix", "SpatialExperiment", "caret", "doParallel", "dplyr", "foreach", "glmnet", "magrittr", "spatstat_geom"]
9605 },
9606 "karyoploteR": {
9607 "name": "karyoploteR",
9608 "version": "1.36.0",
9609 "sha256": "0ymrs6mf0sxfczyxyy8nicg5cir7vz4srl2rjdz7h3937rz965yh",
9610 "depends": ["AnnotationDbi", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "VariantAnnotation", "bamsignals", "bezier", "biovizBase", "digest", "memoise", "regioneR", "rtracklayer"]
9611 },
9612 "katdetectr": {
9613 "name": "katdetectr",
9614 "version": "1.12.0",
9615 "sha256": "1w1wj2mja9wvlq8zsyc9bbnqsfp8hbi1ga792br15gc2dmhdnajx",
9616 "depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Hsapiens_UCSC_hg38", "Biobase", "BiocParallel", "GenomeInfoDb", "GenomicRanges", "IRanges", "Rdpack", "S4Vectors", "VariantAnnotation", "changepoint", "changepoint_np", "checkmate", "dplyr", "ggplot2", "ggtext", "maftools", "plyranges", "rlang", "scales", "tibble", "tidyr"]
9617 },
9618 "kebabs": {
9619 "name": "kebabs",
9620 "version": "1.44.0",
9621 "sha256": "0wkyn73bcvqdljfscdjvjf3z3997k6crr26q38n8g3wd8x3yd672",
9622 "depends": ["Biostrings", "IRanges", "LiblineaR", "Matrix", "Rcpp", "S4Vectors", "XVector", "apcluster", "e1071", "kernlab"]
9623 },
9624 "keggorthology": {
9625 "name": "keggorthology",
9626 "version": "2.62.0",
9627 "sha256": "01qnwfqqxd741py39qi90dm46i9fvhbdhwvvzirypigy3v1mnlkw",
9628 "depends": ["AnnotationDbi", "DBI", "graph", "hgu95av2_db"]
9629 },
9630 "kissDE": {
9631 "name": "kissDE",
9632 "version": "1.30.0",
9633 "sha256": "1i7s9nf8vdcm08805njbz6aqy77k7rir0sdq10jc0kk4qvfd857m",
9634 "depends": ["Biobase", "DESeq2", "DSS", "DT", "ade4", "aods3", "doParallel", "factoextra", "foreach", "ggplot2", "gplots", "matrixStats", "shiny", "shinycssloaders"]
9635 },
9636 "kmcut": {
9637 "name": "kmcut",
9638 "version": "1.4.0",
9639 "sha256": "0kbzkskb4y6bq9hcq68znl3y3g00inwb6sq0wsqkb6rpdsd3lh06",
9640 "depends": ["S4Vectors", "SummarizedExperiment", "doParallel", "foreach", "pracma", "survival"]
9641 },
9642 "knowYourCG": {
9643 "name": "knowYourCG",
9644 "version": "1.6.0",
9645 "sha256": "0z3xy1jhm4swzjvairkrxb8z9qqmlrjya8ivsd4jq8jvmawq9wjh",
9646 "depends": ["GenomicRanges", "IRanges", "S4Vectors", "dplyr", "ggplot2", "ggrepel", "magrittr", "reshape2", "rlang", "sesameData", "stringr", "tibble", "wheatmap"]
9647 },
9648 "koinar": {
9649 "name": "koinar",
9650 "version": "1.4.0",
9651 "sha256": "1fdk46bc7c42jdlqij7f0b8rq067pgr3dmvv9fg4n1410irlwd0c",
9652 "depends": ["httr", "jsonlite"]
9653 },
9654 "ldblock": {
9655 "name": "ldblock",
9656 "version": "1.40.0",
9657 "sha256": "1v47yvbcpcf9z06gfmjsmxrf06pn57fsbmjshq0ypg5p3c3jn81p",
9658 "depends": ["BiocGenerics", "Matrix", "Seqinfo", "httr", "rlang"]
9659 },
9660 "lefser": {
9661 "name": "lefser",
9662 "version": "1.20.0",
9663 "sha256": "14gmghf65m7s6x6l5nq1bmmfwx76k4kkmvvvx0p6r4ycpk39rccm",
9664 "depends": ["BiocGenerics", "MASS", "S4Vectors", "SummarizedExperiment", "ape", "coin", "dplyr", "forcats", "ggplot2", "ggrepel", "ggtree", "mia", "purrr", "stringr", "testthat", "tibble", "tidyr", "tidyselect", "treeio"]
9665 },
9666 "lemur": {
9667 "name": "lemur",
9668 "version": "1.8.0",
9669 "sha256": "0v4wcvpj6gdz0qnw72dr6g2bw9nbfr0bfjpn04f7pliz7vnhm568",
9670 "depends": ["BiocGenerics", "BiocNeighbors", "DelayedMatrixStats", "HDF5Array", "Matrix", "MatrixGenerics", "Rcpp", "RcppArmadillo", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "glmGamPoi", "harmony", "irlba", "limma", "matrixStats", "rlang", "vctrs"]
9671 },
9672 "les": {
9673 "name": "les",
9674 "version": "1.60.0",
9675 "sha256": "16n5fbifgikh2knjja6a4yqmwy14qxlqcyscs1a8dhs74fz9nyai",
9676 "depends": ["RColorBrewer", "boot", "fdrtool", "gplots"]
9677 },
9678 "levi": {
9679 "name": "levi",
9680 "version": "1.28.0",
9681 "sha256": "0n31dqr03nc1b9kri8jjh8k19yny83jvv3y8x6fya12gm3vqa124",
9682 "depends": ["DT", "RColorBrewer", "Rcpp", "colorspace", "dplyr", "ggplot2", "httr", "igraph", "knitr", "reshape2", "rmarkdown", "shiny", "shinydashboard", "shinyjs", "testthat", "xml2"]
9683 },
9684 "lfa": {
9685 "name": "lfa",
9686 "version": "2.10.0",
9687 "sha256": "0hfagl99sf92000ng0wcn88sblzb64mr8b7kfi4zz2q79n9l8b49",
9688 "depends": ["RSpectra", "corpcor"]
9689 },
9690 "limma": {
9691 "name": "limma",
9692 "version": "3.66.0",
9693 "sha256": "1901p5k4wb7jaifdq8gybiw1sihvr7v3gnf5l4484wrhf2zl3fnq",
9694 "depends": ["statmod"]
9695 },
9696 "limmaGUI": {
9697 "name": "limmaGUI",
9698 "version": "1.86.0",
9699 "sha256": "1ik0wadac2yvmrcvqk25irmlx0qb8hwlj06lqai2kvnz1x2drfdc",
9700 "depends": ["R2HTML", "limma", "tkrplot", "xtable"]
9701 },
9702 "limpa": {
9703 "name": "limpa",
9704 "version": "1.2.0",
9705 "sha256": "105gcsf42p91xx213xrfqiywk9hvh9j3dy9bdnp9kmk0ncv4489a",
9706 "depends": ["data_table", "limma", "statmod"]
9707 },
9708 "limpca": {
9709 "name": "limpca",
9710 "version": "1.6.0",
9711 "sha256": "0820zpw7p18dha8bypvmxck5c8wqjjm0s9l1wycn01g6jidkxizl",
9712 "depends": ["S4Vectors", "SummarizedExperiment", "doParallel", "dplyr", "ggplot2", "ggrepel", "ggsci", "plyr", "reshape2", "stringr", "tibble", "tidyr", "tidyverse"]
9713 },
9714 "lineagespot": {
9715 "name": "lineagespot",
9716 "version": "1.14.0",
9717 "sha256": "1m0xc2i611py0q5293jp998z7x3bznfzx3p30fylv7sr5vwa98xb",
9718 "depends": ["MatrixGenerics", "SummarizedExperiment", "VariantAnnotation", "data_table", "httr", "stringr"]
9719 },
9720 "linkSet": {
9721 "name": "linkSet",
9722 "version": "1.0.0",
9723 "sha256": "1rsivkr48fpspqh4771i7irl1n0bpaaf3nkm82gr9pxp293rhgz3",
9724 "depends": ["AnnotationDbi", "BiocGenerics", "DBI", "GenomeInfoDb", "GenomicRanges", "IRanges", "InteractionSet", "MASS", "Organism_dplyr", "S4Vectors", "data_table", "doParallel", "foreach", "ggplot2", "iterators", "patchwork", "rlang", "scales"]
9725 },
9726 "lionessR": {
9727 "name": "lionessR",
9728 "version": "1.24.0",
9729 "sha256": "077j3fh2i2ikkpaaxkf9y1cc4kbii83x0b7fxnpps69d018hc9fp",
9730 "depends": ["S4Vectors", "SummarizedExperiment"]
9731 },
9732 "lipidr": {
9733 "name": "lipidr",
9734 "version": "2.24.0",
9735 "sha256": "1hjwglxngn4b3xss702cpfq05q27bk6jkg7sdxhpcxj07976mpgw",
9736 "depends": ["S4Vectors", "SummarizedExperiment", "data_table", "dplyr", "fgsea", "forcats", "ggplot2", "imputeLCMD", "limma", "magrittr", "rlang", "ropls", "tidyr"]
9737 },
9738 "lisaClust": {
9739 "name": "lisaClust",
9740 "version": "1.18.0",
9741 "sha256": "1c3zx3s3mv980gy9s2n7763q5sas552msvgx8x4dmik569g6kv08",
9742 "depends": ["BiocGenerics", "BiocParallel", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "class", "concaveman", "data_table", "dplyr", "ggplot2", "lifecycle", "pheatmap", "purrr", "rlang", "simpleSeg", "spatstat_explore", "spatstat_geom", "spatstat_random", "spicyR", "tidyr"]
9743 },
9744 "lmdme": {
9745 "name": "lmdme",
9746 "version": "1.52.0",
9747 "sha256": "15a9wzz3rhwdvv8wvpfm8v2c4casa9qj0m162hrz6dnc07mwxnnj",
9748 "depends": ["limma", "pls", "stemHypoxia"]
9749 },
9750 "loci2path": {
9751 "name": "loci2path",
9752 "version": "1.30.0",
9753 "sha256": "1384sfssk8xv28g7vjib3qjswq58cqnzwnlxyrj1yasj7aid2r0n",
9754 "depends": ["BiocParallel", "GenomicRanges", "RColorBrewer", "S4Vectors", "data_table", "pheatmap", "wordcloud"]
9755 },
9756 "logicFS": {
9757 "name": "logicFS",
9758 "version": "2.30.0",
9759 "sha256": "0bg85d0kmzwyviywmrwvdn6qczajqzbzzzkwfawzgmp5p65ssgfk",
9760 "depends": ["LogicReg", "mcbiopi", "survival"]
9761 },
9762 "looking4clusters": {
9763 "name": "looking4clusters",
9764 "version": "1.0.0",
9765 "sha256": "1982qhk0zj9q7wxzd3qflwcv71z8bz3f3zn4yc72zqpdx7hf80z8",
9766 "depends": ["BiocBaseUtils", "SingleCellExperiment", "SummarizedExperiment", "jsonlite"]
9767 },
9768 "lpNet": {
9769 "name": "lpNet",
9770 "version": "2.42.0",
9771 "sha256": "027d9iiqrxfmr86hnvnfc3g5bk23qnly05xz0akxx1yrvmka369q",
9772 "depends": ["KEGGgraph", "lpSolve"]
9773 },
9774 "lpsymphony": {
9775 "name": "lpsymphony",
9776 "version": "1.38.0",
9777 "sha256": "0l3zf7f9agkwcm4xbnws7ld77w7fiqx26qjh5rzyvvzprb65xiax",
9778 "depends": []
9779 },
9780 "lumi": {
9781 "name": "lumi",
9782 "version": "2.62.0",
9783 "sha256": "0m20f9399wdf778kgmgdf5fc4axbbq8shynrwjraa0smlr5zg6zy",
9784 "depends": ["AnnotationDbi", "Biobase", "DBI", "GenomicFeatures", "GenomicRanges", "KernSmooth", "MASS", "RSQLite", "affy", "annotate", "lattice", "methylumi", "mgcv", "nleqslv", "preprocessCore"]
9785 },
9786 "m6Aboost": {
9787 "name": "m6Aboost",
9788 "version": "1.16.0",
9789 "sha256": "0vldnbc56w2mv7c994lwydgh5ij3bi85ws7pa1dqvn1fkvyf7r0v",
9790 "depends": ["BSgenome", "Biostrings", "ExperimentHub", "GenomicRanges", "IRanges", "S4Vectors", "adabag", "dplyr", "rtracklayer"]
9791 },
9792 "mBPCR": {
9793 "name": "mBPCR",
9794 "version": "1.64.0",
9795 "sha256": "0xl7si4d3r3akfqym9v2kxrsji1gzdm6wlyan1lclqjdb3qlwai9",
9796 "depends": ["Biobase", "GWASTools", "oligoClasses"]
9797 },
9798 "maCorrPlot": {
9799 "name": "maCorrPlot",
9800 "version": "1.80.0",
9801 "sha256": "0yppp6dcrnxfi3kb37x8zkkhz93bm84svfpbs39v5q1h5qcrn7kn",
9802 "depends": ["lattice"]
9803 },
9804 "maPredictDSC": {
9805 "name": "maPredictDSC",
9806 "version": "1.48.0",
9807 "sha256": "1kqxwqpm82457bjswmgkc3ycda0j7fnknaa74v5ghl7lsp267np0",
9808 "depends": ["AnnotationDbi", "LungCancerACvsSCCGEO", "MASS", "ROC", "ROCR", "affy", "caret", "class", "e1071", "gcrma", "hgu133plus2_db", "limma"]
9809 },
9810 "maSigPro": {
9811 "name": "maSigPro",
9812 "version": "1.82.0",
9813 "sha256": "13l7nasczy4nyqwyrvcw3ki575phjz7rcc4127qvkx0cbxkvmkha",
9814 "depends": ["Biobase", "MASS", "mclust", "venn"]
9815 },
9816 "maaslin3": {
9817 "name": "maaslin3",
9818 "version": "1.2.0",
9819 "sha256": "0dlr8k9h6m95six3sbinczrvf9778qba0bf1gng51062zhw0hkdc",
9820 "depends": ["BiocGenerics", "RColorBrewer", "SummarizedExperiment", "TreeSummarizedExperiment", "dplyr", "ggnewscale", "ggplot2", "lme4", "lmerTest", "logging", "multcomp", "optparse", "patchwork", "pbapply", "plyr", "rlang", "scales", "survival", "tibble"]
9821 },
9822 "made4": {
9823 "name": "made4",
9824 "version": "1.84.0",
9825 "sha256": "16lcqxwafjmsslydxn6jd4jyvapbky8alsqdnc7bh3lmlmz3kv8v",
9826 "depends": ["Biobase", "RColorBrewer", "SummarizedExperiment", "ade4", "gplots", "scatterplot3d"]
9827 },
9828 "maftools": {
9829 "name": "maftools",
9830 "version": "2.26.0",
9831 "sha256": "0s9a119rrk0l4p8vq6bbg2b9m465ihkdhxiv64my77a4f93i31n1",
9832 "depends": ["DNAcopy", "RColorBrewer", "Rhtslib", "data_table", "pheatmap", "survival"]
9833 },
9834 "magpie": {
9835 "name": "magpie",
9836 "version": "1.10.0",
9837 "sha256": "1vcv4xn55x8m08f8krrpn1ap22f9247gs7817p8bqm58lxlj9r05",
9838 "depends": ["AnnotationDbi", "BiocParallel", "DESeq2", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "RColorBrewer", "Rsamtools", "S4Vectors", "TRESS", "aod", "matrixStats", "openxlsx", "reshape2", "rtracklayer"]
9839 },
9840 "magrene": {
9841 "name": "magrene",
9842 "version": "1.12.0",
9843 "sha256": "0fn60g28m839kmrnvdzh6ywgi72d4yww0z824i1v9z6v7hjjmn0d",
9844 "depends": ["BiocParallel"]
9845 },
9846 "makecdfenv": {
9847 "name": "makecdfenv",
9848 "version": "1.86.0",
9849 "sha256": "1sxx9986nv9bpwxp3gpxfbk7vagqig914cds12bfvjyfxwg49wfz",
9850 "depends": ["Biobase", "affy", "affyio"]
9851 },
9852 "mapscape": {
9853 "name": "mapscape",
9854 "version": "1.34.0",
9855 "sha256": "1rx81aasdi1hg2a3ywqczjgnwrz1axdfkpn91yz2qrj9v7d6zcdi",
9856 "depends": ["base64enc", "htmlwidgets", "jsonlite", "stringr"]
9857 },
9858 "mariner": {
9859 "name": "mariner",
9860 "version": "1.10.0",
9861 "sha256": "0i2y0q4icmbj7z7hb1qjrhxj7lg0k3l2fl03125z0hi0d8pb0qfq",
9862 "depends": ["BiocGenerics", "BiocManager", "BiocParallel", "DelayedArray", "GenomeInfoDb", "GenomicRanges", "HDF5Array", "IRanges", "InteractionSet", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "abind", "assertthat", "colourvalues", "data_table", "dbscan", "glue", "magrittr", "plotgardener", "plyranges", "progress", "purrr", "rhdf5", "rlang", "strawr"]
9863 },
9864 "markeR": {
9865 "name": "markeR",
9866 "version": "1.0.0",
9867 "sha256": "1k51rp13y8cq0p0kxsbzcvz1dmarw02ifvf784nq2d1a1v7qzda2",
9868 "depends": ["ComplexHeatmap", "RColorBrewer", "circlize", "edgeR", "effectsize", "fgsea", "ggh4x", "ggplot2", "ggpubr", "ggrepel", "gridExtra", "limma", "msigdbr", "pROC", "reshape2", "rstatix", "scales", "tibble"]
9869 },
9870 "marr": {
9871 "name": "marr",
9872 "version": "1.20.0",
9873 "sha256": "1q89n1pzzf5w742aqgcygcid0dnx8vn8z1ygkl1q9ldpdyanpmg0",
9874 "depends": ["Rcpp", "S4Vectors", "SummarizedExperiment", "dplyr", "ggplot2", "magrittr", "rlang"]
9875 },
9876 "marray": {
9877 "name": "marray",
9878 "version": "1.88.0",
9879 "sha256": "01zv8fx8yf1i8zk3mbfzygm3ys8gfrbfir8bbki08n8zk8bxj1r8",
9880 "depends": ["limma"]
9881 },
9882 "martini": {
9883 "name": "martini",
9884 "version": "1.30.0",
9885 "sha256": "1j44n3qi1gls2dn8zhx8p8k18z95bqnmi6a88divl2xlxv9q520q",
9886 "depends": ["Matrix", "Rcpp", "RcppEigen", "igraph", "memoise", "snpStats"]
9887 },
9888 "maser": {
9889 "name": "maser",
9890 "version": "1.28.0",
9891 "sha256": "0h41vajx7dvacp62bl8fab9zmv6fhnzjwdprvh0lrg26j7zivk9i",
9892 "depends": ["BiocGenerics", "DT", "GenomicRanges", "Gviz", "IRanges", "Seqinfo", "data_table", "dplyr", "ggplot2", "reshape2", "rtracklayer"]
9893 },
9894 "maskBAD": {
9895 "name": "maskBAD",
9896 "version": "1.54.0",
9897 "sha256": "0fcbj4v8k5na9iina6458ngk79mq3q147g6x5yj3k65gyy6ik0i7",
9898 "depends": ["affy", "gcrma"]
9899 },
9900 "massiR": {
9901 "name": "massiR",
9902 "version": "1.46.0",
9903 "sha256": "0dgzld48idxxfxghq4q4c8gpn6szhg7l54cm349jp5wwi7fwk6gq",
9904 "depends": ["Biobase", "cluster", "diptest", "gplots"]
9905 },
9906 "mastR": {
9907 "name": "mastR",
9908 "version": "1.10.0",
9909 "sha256": "1pdy3yzlkvf1j3j1zi8w1jy1rllacrp228i5wi57r8d32cp8y283",
9910 "depends": ["AnnotationDbi", "Biobase", "GSEABase", "Matrix", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "edgeR", "ggplot2", "ggpubr", "limma", "msigdb", "org_Hs_eg_db", "patchwork", "tidyr"]
9911 },
9912 "matchBox": {
9913 "name": "matchBox",
9914 "version": "1.52.0",
9915 "sha256": "11gsigii003rjcqpp2ia85pwwpf36j8q6wr1w94ya7874gxcrkgq",
9916 "depends": []
9917 },
9918 "matter": {
9919 "name": "matter",
9920 "version": "2.12.0",
9921 "sha256": "0r8jpxx3zr498fj890l34rwidmq3zgyq289f7dblfkz70ma6j47i",
9922 "depends": ["BH", "BiocGenerics", "BiocParallel", "Matrix", "ProtGenerics", "digest", "irlba"]
9923 },
9924 "mbQTL": {
9925 "name": "mbQTL",
9926 "version": "1.10.0",
9927 "sha256": "0mbi87d12yjfdbrplc4906i6hm7nifsy7ar3wi8fgwjs220r38df",
9928 "depends": ["MatrixEQTL", "broom", "dplyr", "ggplot2", "metagenomeSeq", "pheatmap", "readxl", "stringr", "tidyr"]
9929 },
9930 "mbkmeans": {
9931 "name": "mbkmeans",
9932 "version": "1.26.0",
9933 "sha256": "1sa10gnc962311c7hgmjb3c51hz7s3704yfs2bf7kxzfjyja402s",
9934 "depends": ["BiocParallel", "ClusterR", "DelayedArray", "Matrix", "Rcpp", "RcppArmadillo", "Rhdf5lib", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "beachmat", "benchmarkme"]
9935 },
9936 "mdp": {
9937 "name": "mdp",
9938 "version": "1.30.0",
9939 "sha256": "1r0m5700kqnq9g0lbsgk6iv96vkriwqlk6k2jk5igdlhww75hkwq",
9940 "depends": ["ggplot2", "gridExtra"]
9941 },
9942 "mdqc": {
9943 "name": "mdqc",
9944 "version": "1.72.0",
9945 "sha256": "1cifi9zhy1fv733b39crznkj2kjxxh34aygdvzz1gk7g8b7zcs5j",
9946 "depends": ["MASS", "cluster"]
9947 },
9948 "megadepth": {
9949 "name": "megadepth",
9950 "version": "1.20.0",
9951 "sha256": "115zxqa0dbamc4p6kx9zxc06y0agz7dmi059afw4ci2qyx73smsp",
9952 "depends": ["GenomicRanges", "cmdfun", "dplyr", "fs", "magrittr", "readr", "xfun"]
9953 },
9954 "memes": {
9955 "name": "memes",
9956 "version": "1.18.0",
9957 "sha256": "14gwcrpxwgz0amgm25l00x129kln3fd40if2r1qgvbmlff1cx9sq",
9958 "depends": ["Biostrings", "GenomicRanges", "cmdfun", "dplyr", "ggplot2", "ggseqlogo", "magrittr", "matrixStats", "patchwork", "processx", "purrr", "readr", "rlang", "tibble", "tidyr", "universalmotif", "usethis", "xml2"]
9959 },
9960 "meshes": {
9961 "name": "meshes",
9962 "version": "1.36.0",
9963 "sha256": "01mm15crzsg6z7j5ww93ig557j272vk9bgfihbgvi4da8zmasv8c",
9964 "depends": ["AnnotationDbi", "AnnotationHub", "DOSE", "GOSemSim", "MeSHDbi", "enrichplot", "yulab_utils"]
9965 },
9966 "meshr": {
9967 "name": "meshr",
9968 "version": "2.16.0",
9969 "sha256": "0lqj3yh2kyapjvbgh8w1bwdj96dhzxxs3zyqz2r6his0b28kdjfr",
9970 "depends": ["BiocGenerics", "BiocStyle", "Category", "MeSHDbi", "RSQLite", "S4Vectors", "fdrtool", "knitr", "markdown", "rmarkdown"]
9971 },
9972 "messina": {
9973 "name": "messina",
9974 "version": "1.46.0",
9975 "sha256": "0n1jjiqhpgrnbs7nnp0sf281xlz1i0rxk2957fdlwa8f602akg3y",
9976 "depends": ["Rcpp", "foreach", "ggplot2", "plyr", "survival"]
9977 },
9978 "metaCCA": {
9979 "name": "metaCCA",
9980 "version": "1.38.0",
9981 "sha256": "1jzh9qr66wzrnz5c5xsv9y414nm62ziph2ldcd8fachvqc7wwnls",
9982 "depends": []
9983 },
9984 "metaMS": {
9985 "name": "metaMS",
9986 "version": "1.46.0",
9987 "sha256": "0cymdlv8sjamcs82k3xcjykhfin5fqyyamz8xwrj19pxa2hfr7x9",
9988 "depends": ["BiocGenerics", "CAMERA", "Matrix", "robustbase", "xcms"]
9989 },
9990 "metaSeq": {
9991 "name": "metaSeq",
9992 "version": "1.50.0",
9993 "sha256": "1jz4fyspc7pvrddm40xp79d3bh0agiqx68sp4i2y3cbrzba2y5xq",
9994 "depends": ["NOISeq", "Rcpp", "snow"]
9995 },
9996 "metabCombiner": {
9997 "name": "metabCombiner",
9998 "version": "1.20.0",
9999 "sha256": "1v771vqpjpxx7yng1hnci7nrxqbxzv3ns471r1nl1svjghngklmm",
10000 "depends": ["S4Vectors", "caret", "dplyr", "matrixStats", "mgcv", "rlang", "tidyr"]
10001 },
10002 "metabinR": {
10003 "name": "metabinR",
10004 "version": "1.12.0",
10005 "sha256": "0pda023fw6qbybp68p9mmcxr9slf24fsqf9agsn4b9207pmr20pp",
10006 "depends": ["rJava"]
10007 },
10008 "metabomxtr": {
10009 "name": "metabomxtr",
10010 "version": "1.44.0",
10011 "sha256": "1rmxjnx22kr08ppazpsjb5nmq0ji4wj73kmxn0pd5ixivwkz1bin",
10012 "depends": ["Biobase", "BiocParallel", "Formula", "ggplot2", "multtest", "optimx", "plyr"]
10013 },
10014 "metagene2": {
10015 "name": "metagene2",
10016 "version": "1.26.0",
10017 "sha256": "0a9kmm66qpgf1n8jj7h0c05h2vdkg7kw9lc190dyv9hk6fy542m1",
10018 "depends": ["BiocParallel", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "R6", "Rsamtools", "data_table", "dplyr", "ggplot2", "magrittr", "purrr", "reshape2", "rtracklayer"]
10019 },
10020 "metagenomeSeq": {
10021 "name": "metagenomeSeq",
10022 "version": "1.52.0",
10023 "sha256": "0bkgf6kyh7j767cynxcxqm9xxrqxfq0zzps82hj168n27agx5m30",
10024 "depends": ["Biobase", "Matrix", "RColorBrewer", "Wrench", "foreach", "glmnet", "gplots", "limma", "matrixStats"]
10025 },
10026 "metahdep": {
10027 "name": "metahdep",
10028 "version": "1.68.0",
10029 "sha256": "09rxii0nsrckkr383192sn926s45zc5wpds9rv04fz4f47m1s2qy",
10030 "depends": []
10031 },
10032 "metapod": {
10033 "name": "metapod",
10034 "version": "1.18.0",
10035 "sha256": "1wfy183k5zk41yjr6wlp8jzhjjz2bkqjdifmz1w6fky25ry700gi",
10036 "depends": ["Rcpp"]
10037 },
10038 "metapone": {
10039 "name": "metapone",
10040 "version": "1.16.0",
10041 "sha256": "13bblag8w907qddcvbaqjvlqpbyj23c5jb1cghkajqpf1pn3gmdl",
10042 "depends": ["BiocParallel", "fdrtool", "fgsea", "fields", "ggplot2", "ggrepel", "markdown"]
10043 },
10044 "metaseqR2": {
10045 "name": "metaseqR2",
10046 "version": "1.22.0",
10047 "sha256": "01s9gpndc1skpq69wdsm1kgcz7n4i1zm38g731zphhnw4w3kad54",
10048 "depends": ["ABSSeq", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DESeq2", "DSS", "DT", "EDASeq", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "MASS", "Matrix", "NBPSeq", "RSQLite", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VennDiagram", "biomaRt", "corrplot", "edgeR", "genefilter", "gplots", "harmonicmeanp", "heatmaply", "htmltools", "httr", "jsonlite", "lattice", "limma", "locfit", "log4r", "magrittr", "pander", "qvalue", "rmarkdown", "rmdformats", "rtracklayer", "stringr", "survcomp", "txdbmaker", "vsn", "yaml", "zoo"]
10049 },
10050 "methInheritSim": {
10051 "name": "methInheritSim",
10052 "version": "1.32.0",
10053 "sha256": "1j53b5d3wfkj0i84sq0aj6nx9adiavjg64bh0xwaq78n7qn6sbm6",
10054 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "methylKit", "msm"]
10055 },
10056 "methimpute": {
10057 "name": "methimpute",
10058 "version": "1.32.0",
10059 "sha256": "0zl945lhl291fsbdwgdyqlc3fy8i7z4bn2a21p2j0ald11s63x6d",
10060 "depends": ["Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "Rcpp", "data_table", "ggplot2", "minpack_lm", "reshape2"]
10061 },
10062 "methodical": {
10063 "name": "methodical",
10064 "version": "1.6.0",
10065 "sha256": "14mrc00ya5a372j5q2rrxxp54cbwridaz2b5mm45wqvwgms6bvg5",
10066 "depends": ["AnnotationHub", "BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Hsapiens_UCSC_hg38", "BiocCheck", "BiocManager", "BiocParallel", "BiocStyle", "Biostrings", "DelayedArray", "ExperimentHub", "GenomeInfoDb", "GenomicRanges", "HDF5Array", "IRanges", "MatrixGenerics", "R_utils", "RcppRoll", "S4Vectors", "SummarizedExperiment", "TumourMethData", "annotatr", "cowplot", "data_table", "devtools", "dplyr", "foreach", "ggplot2", "knitr", "rcmdcheck", "remotes", "rhdf5", "rtracklayer", "scales", "tibble", "tidyr", "usethis"]
10067 },
10068 "methrix": {
10069 "name": "methrix",
10070 "version": "1.24.0",
10071 "sha256": "1jlbk6yb9815xrgar9nc8g8qzl93451gcx6smr7s2agzxnpxi8vz",
10072 "depends": ["BSgenome", "DelayedArray", "DelayedMatrixStats", "GenomicRanges", "HDF5Array", "IRanges", "S4Vectors", "SummarizedExperiment", "data_table", "ggplot2", "matrixStats", "rtracklayer"]
10073 },
10074 "methyLImp2": {
10075 "name": "methyLImp2",
10076 "version": "1.6.0",
10077 "sha256": "1800chr3r65iqpdjxymqd6sjg81ckvv841ycdad1xrpva9g6dv8g",
10078 "depends": ["BiocParallel", "ChAMPdata", "SummarizedExperiment", "corpcor"]
10079 },
10080 "methylCC": {
10081 "name": "methylCC",
10082 "version": "1.24.0",
10083 "sha256": "1m4n82knw39yzlnir7v3ddkfgl66nxgcafsn4sd7a7kldvh9kzwc",
10084 "depends": ["Biobase", "FlowSorted_Blood_450k", "GenomicRanges", "IRanges", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "IlluminaHumanMethylation450kmanifest", "S4Vectors", "bsseq", "bumphunter", "dplyr", "genefilter", "magrittr", "minfi", "plyranges", "quadprog"]
10085 },
10086 "methylGSA": {
10087 "name": "methylGSA",
10088 "version": "1.28.0",
10089 "sha256": "0980n655ahjadi3d052x5mf7w6n9m79ly9188if9d9dqq9ggmncn",
10090 "depends": ["AnnotationDbi", "BiocParallel", "GO_db", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "IlluminaHumanMethylationEPICanno_ilm10b4_hg19", "RobustRankAggreg", "clusterProfiler", "ggplot2", "missMethyl", "org_Hs_eg_db", "reactome_db", "shiny", "stringr"]
10091 },
10092 "methylInheritance": {
10093 "name": "methylInheritance",
10094 "version": "1.34.0",
10095 "sha256": "1b6i1szvzh9bc4hryq8czmz7c5l70aqc8i2lrzhf40sga7iahg6q",
10096 "depends": ["BiocParallel", "GenomicRanges", "IRanges", "S4Vectors", "ggplot2", "gridExtra", "methylKit", "rebus"]
10097 },
10098 "methylKit": {
10099 "name": "methylKit",
10100 "version": "1.36.0",
10101 "sha256": "0ay3x7scmp7j3g3vqlyb3w2cnakaw2bbprj7fsdy6mda7py9p2qi",
10102 "depends": ["GenomicRanges", "IRanges", "KernSmooth", "R_utils", "Rcpp", "Rhtslib", "Rsamtools", "S4Vectors", "Seqinfo", "data_table", "emdbook", "fastseg", "gtools", "limma", "mclust", "mgcv", "qvalue", "rtracklayer"]
10103 },
10104 "methylMnM": {
10105 "name": "methylMnM",
10106 "version": "1.48.0",
10107 "sha256": "0h946n923mqmcbvbs2lrxh9wdnwhxg7nmbhhq0nd1na480bqa6cb",
10108 "depends": ["edgeR", "statmod"]
10109 },
10110 "methylPipe": {
10111 "name": "methylPipe",
10112 "version": "1.44.0",
10113 "sha256": "1lzkpc54j4idw1zcfj7cbjq42in25f4nk8cvkif5w0a6z0h4djjn",
10114 "depends": ["BiocGenerics", "Biostrings", "GenomicAlignments", "GenomicRanges", "Gviz", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "data_table", "gplots", "marray"]
10115 },
10116 "methylSig": {
10117 "name": "methylSig",
10118 "version": "1.22.0",
10119 "sha256": "155dky5z1gdrkns96hr8vvrickidwsjzk5z0c75rkfnqhk8dqjg6",
10120 "depends": ["DSS", "DelayedArray", "DelayedMatrixStats", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "bsseq"]
10121 },
10122 "methylclock": {
10123 "name": "methylclock",
10124 "version": "1.16.0",
10125 "sha256": "0kxdygwna7qxnk6v29aj8b5n43vhag61sjkd761vy76ngxvs202c",
10126 "depends": ["Biobase", "ExperimentHub", "PerformanceAnalytics", "RPMM", "Rcpp", "devtools", "dplyr", "dynamicTreeCut", "ggplot2", "ggpmisc", "ggpubr", "gridExtra", "impute", "methylclockData", "minfi", "planet", "preprocessCore", "quadprog", "tibble", "tidyr", "tidyverse"]
10127 },
10128 "methylscaper": {
10129 "name": "methylscaper",
10130 "version": "1.18.0",
10131 "sha256": "1g2h09ivqrgm52dv5nr2pbrwk94h58s9f7inc0wilj8miv9iby91",
10132 "depends": ["BiocParallel", "Biostrings", "Rfast", "SummarizedExperiment", "data_table", "pwalign", "seqinr", "seriation", "shiny", "shinyFiles", "shinyjs"]
10133 },
10134 "methylumi": {
10135 "name": "methylumi",
10136 "version": "2.56.0",
10137 "sha256": "0wxyy8wiz85x3ls29gm3s64p1vqhfi3av1j6zzm8xwxi8fjlnv1y",
10138 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "FDb_InfiniumMethylation_hg19", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "annotate", "genefilter", "ggplot2", "illuminaio", "lattice", "matrixStats", "minfi", "reshape2", "scales"]
10139 },
10140 "mgsa": {
10141 "name": "mgsa",
10142 "version": "1.58.0",
10143 "sha256": "0cfhqjf86p9c00c1nn0yy9zqgqxs3v8wikp1k3jidpd1fq6g778n",
10144 "depends": ["gplots"]
10145 },
10146 "miQC": {
10147 "name": "miQC",
10148 "version": "1.18.0",
10149 "sha256": "1iw726i35icmzx7qjlh4gddng96h6yrzg6iy8pqi64ys4i1fvirb",
10150 "depends": ["SingleCellExperiment", "flexmix", "ggplot2"]
10151 },
10152 "miRBaseConverter": {
10153 "name": "miRBaseConverter",
10154 "version": "1.34.0",
10155 "sha256": "09710mz03lnvh45969nbzwdfl699yzmf745kwm8yzkl2djgipb6q",
10156 "depends": []
10157 },
10158 "miRLAB": {
10159 "name": "miRLAB",
10160 "version": "1.40.0",
10161 "sha256": "17sg5y6xk3szvjcn5cd2jq3n5p47df0hckk9pdzsc2ac7z7vvljr",
10162 "depends": ["Category", "GOstats", "Hmisc", "InvariantCausalPrediction", "RCurl", "SummarizedExperiment", "TCGAbiolinks", "ctc", "dplyr", "energy", "entropy", "glmnet", "gplots", "httr", "impute", "limma", "org_Hs_eg_db", "pcalg", "stringr"]
10163 },
10164 "miRNAmeConverter": {
10165 "name": "miRNAmeConverter",
10166 "version": "1.38.0",
10167 "sha256": "025590pfljckxp2bvb83g974sxi8zprbhgixkcglb5szxpvsr1j5",
10168 "depends": ["AnnotationDbi", "DBI", "miRBaseVersions_db", "reshape2"]
10169 },
10170 "miRNApath": {
10171 "name": "miRNApath",
10172 "version": "1.70.0",
10173 "sha256": "09jdm41iqg9ivka8ypyqjfqd7rpm7g5llwk4y9r7jykhjwh2j6d0",
10174 "depends": []
10175 },
10176 "miRNAtap": {
10177 "name": "miRNAtap",
10178 "version": "1.44.0",
10179 "sha256": "13grr33knsgimxb74nmsjahih33zxcq2i2b1ghzxz47c2pc7k721",
10180 "depends": ["AnnotationDbi", "DBI", "RSQLite", "plyr", "sqldf", "stringr"]
10181 },
10182 "miRSM": {
10183 "name": "miRSM",
10184 "version": "2.6.0",
10185 "sha256": "1643mfcfa7a8zmn4pkrgxvr4qhzqwxh91rg8ww17vcqgli3imvf1",
10186 "depends": ["BiBitR", "BicARE", "Biobase", "DOSE", "GFA", "GSEABase", "MCL", "MatrixCorrelation", "NMF", "PMA", "RColorBrewer", "Rcpp", "ReactomePA", "SOMbrero", "SummarizedExperiment", "WGCNA", "biclust", "clusterProfiler", "dbscan", "dynamicTreeCut", "energy", "fabia", "flashClust", "iBBiG", "igraph", "isa2", "mclust", "org_Hs_eg_db", "ppclust", "rJava", "rqubic"]
10187 },
10188 "miRcomp": {
10189 "name": "miRcomp",
10190 "version": "1.40.0",
10191 "sha256": "0g2s82wzvd2zlzlgscwmyi918brklrjhb9b2fljxr8rc25hiy8sm",
10192 "depends": ["Biobase", "KernSmooth", "miRcompData"]
10193 },
10194 "miRspongeR": {
10195 "name": "miRspongeR",
10196 "version": "2.14.0",
10197 "sha256": "0mgfff2kiblr60ymdj31j856lgrai2chlcc54vsmz88pljsb605q",
10198 "depends": ["DOSE", "MCL", "RColorBrewer", "Rcpp", "ReactomePA", "SPONGE", "clusterProfiler", "corpcor", "doParallel", "foreach", "igraph", "org_Hs_eg_db", "survival"]
10199 },
10200 "mia": {
10201 "name": "mia",
10202 "version": "1.18.0",
10203 "sha256": "0rn8y72mlyqk1ss52phg02sj1j6159la8b86hjc83cavrwy9gczn",
10204 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "DECIPHER", "DelayedArray", "DelayedMatrixStats", "DirichletMultinomial", "IRanges", "MASS", "MatrixGenerics", "MultiAssayExperiment", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "bluster", "decontam", "dplyr", "rbiom", "rlang", "scater", "scuttle", "stringr", "tibble", "tidyr", "vegan"]
10205 },
10206 "miaDash": {
10207 "name": "miaDash",
10208 "version": "1.2.0",
10209 "sha256": "0xjb277vl403f968f2lxasp6xvid7iai6wgng67q6c0a4y5fhzli",
10210 "depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "bluster", "htmltools", "iSEE", "iSEEtree", "mia", "rintrojs", "scater", "scuttle", "shiny", "shinyWidgets", "shinydashboard", "shinyjs", "vegan"]
10211 },
10212 "miaSim": {
10213 "name": "miaSim",
10214 "version": "1.16.0",
10215 "sha256": "0smnz25wq9vjpf7a86awfwp519ivc44d91ifj85g20priv6aj65m",
10216 "depends": ["MatrixGenerics", "S4Vectors", "SummarizedExperiment", "TreeSummarizedExperiment", "deSolve", "poweRlaw"]
10217 },
10218 "miaTime": {
10219 "name": "miaTime",
10220 "version": "1.0.0",
10221 "sha256": "1glkmlf7vcbvvn9zscq79npcysyws2rj6ww70sbgpl98jbfnla4b",
10222 "depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TreeSummarizedExperiment", "dplyr", "mia", "tidyr"]
10223 },
10224 "miaViz": {
10225 "name": "miaViz",
10226 "version": "1.18.0",
10227 "sha256": "1zqicbb6bmx9whw0knmbf2z9ghypyrqf0rcjfvayfjb5gk404aba",
10228 "depends": ["BiocGenerics", "BiocParallel", "DelayedArray", "DirichletMultinomial", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "dplyr", "ggnewscale", "ggplot2", "ggraph", "ggrepel", "ggtree", "mia", "rlang", "scales", "scater", "tibble", "tidygraph", "tidyr", "tidytext", "tidytree", "viridis"]
10229 },
10230 "microRNA": {
10231 "name": "microRNA",
10232 "version": "1.68.0",
10233 "sha256": "0bwgqbxqx4y84vazc9fa5p3jpys8wyq24wcs82rlha72y9527f9i",
10234 "depends": ["Biostrings"]
10235 },
10236 "microbiome": {
10237 "name": "microbiome",
10238 "version": "1.32.0",
10239 "sha256": "155sap719s2p52kqlkgjfgaazk4c376fq2y0055zbjfxn688z9bb",
10240 "depends": ["Biostrings", "Rtsne", "compositions", "dplyr", "ggplot2", "phyloseq", "reshape2", "scales", "tibble", "tidyr", "vegan"]
10241 },
10242 "microbiomeDASim": {
10243 "name": "microbiomeDASim",
10244 "version": "1.24.0",
10245 "sha256": "1gwn93vd73fi8d2kgqkznc2gi52hywja7jdnzw8l16w4m5isjh2n",
10246 "depends": ["Biobase", "MASS", "Matrix", "ggplot2", "metagenomeSeq", "mvtnorm", "pbapply", "phyloseq", "tmvtnorm"]
10247 },
10248 "microbiomeExplorer": {
10249 "name": "microbiomeExplorer",
10250 "version": "1.20.0",
10251 "sha256": "0kjbady0qdavjszs1vcb9gmri885mick26ml8426y513ng15h95c",
10252 "depends": ["Biobase", "DESeq2", "DT", "RColorBrewer", "biomformat", "broom", "car", "dplyr", "forcats", "heatmaply", "knitr", "limma", "lubridate", "magrittr", "matrixStats", "metagenomeSeq", "plotly", "purrr", "readr", "reshape2", "rlang", "rmarkdown", "shiny", "shinyWidgets", "shinycssloaders", "shinydashboard", "shinyjs", "stringr", "tibble", "tidyr", "vegan"]
10253 },
10254 "midasHLA": {
10255 "name": "midasHLA",
10256 "version": "1.18.0",
10257 "sha256": "1naxs3khgnz937n7kjfszpryjfj0ymrrl1nyikz07myrkzn0cxam",
10258 "depends": ["HardyWeinberg", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "assertthat", "broom", "dplyr", "formattable", "kableExtra", "knitr", "magrittr", "qdapTools", "rlang", "stringi", "tibble"]
10259 },
10260 "miloR": {
10261 "name": "miloR",
10262 "version": "2.6.0",
10263 "sha256": "10m82jnhfzv2jkknjy7y4mha5cvr4k2m0rs58yb12505aw9n9lda",
10264 "depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "BiocSingular", "Matrix", "MatrixGenerics", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppML", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "cowplot", "dplyr", "edgeR", "ggbeeswarm", "ggplot2", "ggraph", "ggrepel", "gtools", "igraph", "irlba", "limma", "matrixStats", "numDeriv", "patchwork", "pracma", "stringr", "tibble", "tidyr"]
10265 },
10266 "mimager": {
10267 "name": "mimager",
10268 "version": "1.34.0",
10269 "sha256": "081gpygmy0m9pgggznpcq2dw209vx76ip8ayyn9as699fpqiy1ks",
10270 "depends": ["Biobase", "BiocGenerics", "DBI", "S4Vectors", "affy", "affyPLM", "gtable", "oligo", "oligoClasses", "preprocessCore", "scales"]
10271 },
10272 "mina": {
10273 "name": "mina",
10274 "version": "1.18.0",
10275 "sha256": "1pqjir3f8r8rmhg78agccvc0yqwch1nyyanpps6r6d2qlhb5xd16",
10276 "depends": ["Hmisc", "MCL", "RSpectra", "Rcpp", "RcppArmadillo", "RcppParallel", "apcluster", "biganalytics", "bigmemory", "foreach", "ggplot2", "parallelDist", "plyr", "reshape2", "stringr"]
10277 },
10278 "minet": {
10279 "name": "minet",
10280 "version": "3.68.0",
10281 "sha256": "0i1sr5yyn3vwqs5m48z92xcw8ihx21r5r2y0ggqc16a0j5r5rm4g",
10282 "depends": ["infotheo"]
10283 },
10284 "minfi": {
10285 "name": "minfi",
10286 "version": "1.56.0",
10287 "sha256": "1rnaiy8m2nklrn9plf1ca6w0d755iib737s9zmllacrz8lc6b1ik",
10288 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "DelayedArray", "DelayedMatrixStats", "GEOquery", "GenomicRanges", "HDF5Array", "IRanges", "MASS", "RColorBrewer", "S4Vectors", "Seqinfo", "SummarizedExperiment", "beanplot", "bumphunter", "data_table", "genefilter", "illuminaio", "lattice", "limma", "mclust", "nlme", "nor1mix", "preprocessCore", "quadprog", "reshape", "siggenes"]
10289 },
10290 "mirIntegrator": {
10291 "name": "mirIntegrator",
10292 "version": "1.40.0",
10293 "sha256": "0y8xqjcfmz7f89501vmm4n94p88z61ibdz8jn1gl2csnp2i6p781",
10294 "depends": ["AnnotationDbi", "ROntoTools", "Rgraphviz", "ggplot2", "graph", "org_Hs_eg_db"]
10295 },
10296 "mirTarRnaSeq": {
10297 "name": "mirTarRnaSeq",
10298 "version": "1.18.0",
10299 "sha256": "0569hc22mmpaaiyh799ijfhi7zfq45vif25cy8wgk2zfvd73fhza",
10300 "depends": ["MASS", "R_utils", "assertthat", "caTools", "corrplot", "data_table", "dplyr", "ggplot2", "pheatmap", "pscl", "purrr", "reshape2", "viridis"]
10301 },
10302 "missMethyl": {
10303 "name": "missMethyl",
10304 "version": "1.44.0",
10305 "sha256": "1kdy34wvvdvcjxxp0jkj3c54g14pi5qnq3vzs8ywxinf2a45vyiy",
10306 "depends": ["AnnotationDbi", "BiasedUrn", "Biobase", "BiocGenerics", "GO_db", "GenomeInfoDb", "GenomicRanges", "IRanges", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "IlluminaHumanMethylation450kmanifest", "IlluminaHumanMethylationEPICanno_ilm10b4_hg19", "IlluminaHumanMethylationEPICmanifest", "IlluminaHumanMethylationEPICv2anno_20a1_hg38", "IlluminaHumanMethylationEPICv2manifest", "S4Vectors", "SummarizedExperiment", "limma", "methylumi", "minfi", "org_Hs_eg_db", "ruv", "statmod", "stringr"]
10307 },
10308 "missRows": {
10309 "name": "missRows",
10310 "version": "1.30.0",
10311 "sha256": "1p3hgp6w8rjaa83jk75c7f4qv1cblinc21sn88pp99lva7ml7ppr",
10312 "depends": ["MultiAssayExperiment", "S4Vectors", "ggplot2", "gtools", "plyr"]
10313 },
10314 "mist": {
10315 "name": "mist",
10316 "version": "1.2.0",
10317 "sha256": "0s8k2zcjnmm9l8ndwa8acgjkhgmamglbhxy1mx8qrzhgc3ahfmys",
10318 "depends": ["BiocGenerics", "BiocParallel", "MCMCpack", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "car", "mvtnorm", "rlang", "rtracklayer"]
10319 },
10320 "mistyR": {
10321 "name": "mistyR",
10322 "version": "1.18.0",
10323 "sha256": "0hrmw9lnz6pdqhvfmg5gkpx90k05iha5dgzqm30jxpbzq6jwaqcf",
10324 "depends": ["R_utils", "assertthat", "caret", "deldir", "digest", "distances", "dplyr", "filelock", "furrr", "ggplot2", "purrr", "ranger", "readr", "ridge", "rlang", "rlist", "stringr", "tibble", "tidyr", "tidyselect", "withr"]
10325 },
10326 "mitch": {
10327 "name": "mitch",
10328 "version": "1.22.0",
10329 "sha256": "0lixshjjlahm25yn3qn67k12m2wmpd4gmk7vydx9l2shflnsqh41",
10330 "depends": ["GGally", "MASS", "beeswarm", "dplyr", "echarts4r", "ggplot2", "gplots", "gridExtra", "kableExtra", "knitr", "network", "plyr", "reshape2", "rmarkdown"]
10331 },
10332 "mitoClone2": {
10333 "name": "mitoClone2",
10334 "version": "1.16.0",
10335 "sha256": "0rsz3f1gw39hzlf48a2vxsyasipff2dq7nfx4wxi3csr0v2sr7ds",
10336 "depends": ["GenomicRanges", "Matrix", "Rhtslib", "S4Vectors", "deepSNV", "ggplot2", "pheatmap", "reshape2"]
10337 },
10338 "mitology": {
10339 "name": "mitology",
10340 "version": "1.2.0",
10341 "sha256": "0h8smm994dlbszw61858slhy99d3rsbx9fmlmflagvj28yiajz6z",
10342 "depends": ["AnnotationDbi", "ComplexHeatmap", "ReactomePA", "ape", "circlize", "clusterProfiler", "ggplot2", "ggtree", "magrittr", "org_Hs_eg_db", "scales"]
10343 },
10344 "mixOmics": {
10345 "name": "mixOmics",
10346 "version": "6.34.0",
10347 "sha256": "059xfj1air49mfcig226lkicqmq33b4cn7x5m9wpz3qvwa9l3mr7",
10348 "depends": ["BiocParallel", "MASS", "RColorBrewer", "corpcor", "dplyr", "ellipse", "ggplot2", "ggrepel", "gridExtra", "gsignal", "igraph", "lattice", "matrixStats", "rARPACK", "reshape2", "rgl", "tidyr"]
10349 },
10350 "mnem": {
10351 "name": "mnem",
10352 "version": "1.26.0",
10353 "sha256": "0crjbx3kzf2r06601n4f0dd6b46pm3f3azsffblh32rmny28c348",
10354 "depends": ["Linnorm", "Rcpp", "RcppEigen", "Rgraphviz", "cluster", "data_table", "e1071", "flexclust", "ggplot2", "graph", "lattice", "matrixStats", "naturalsort", "snowfall", "tsne", "wesanderson"]
10355 },
10356 "moanin": {
10357 "name": "moanin",
10358 "version": "1.18.0",
10359 "sha256": "1l95lhknp72zzsg28jnfv421pvlqdx4mjarddv3blkc8bm72lp5r",
10360 "depends": ["ClusterR", "MASS", "NMI", "S4Vectors", "SummarizedExperiment", "edgeR", "limma", "matrixStats", "reshape2", "topGO", "viridis", "zoo"]
10361 },
10362 "mobileRNA": {
10363 "name": "mobileRNA",
10364 "version": "1.5.1",
10365 "sha256": "136jliyz1iyf3ncwsval34rnhdgpfgsh2jsxijwnax9vk7q9dixm",
10366 "depends": ["BiocGenerics", "Biostrings", "DESeq2", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "Seqinfo", "SimDesign", "SummarizedExperiment", "bioseq", "data_table", "dplyr", "edgeR", "ggplot2", "ggrepel", "pheatmap", "progress", "reticulate", "rlang", "rtracklayer", "scales", "tidyr", "tidyselect"]
10367 },
10368 "mogsa": {
10369 "name": "mogsa",
10370 "version": "1.44.0",
10371 "sha256": "05n8q7iw1qp1sxjvrh96wpynqv58jm3wiggwkpw0hygz95a5wkxn",
10372 "depends": ["Biobase", "BiocGenerics", "GSEABase", "cluster", "corpcor", "genefilter", "gplots", "graphite", "svd"]
10373 },
10374 "monaLisa": {
10375 "name": "monaLisa",
10376 "version": "1.16.0",
10377 "sha256": "08sjacip97ng2bna1faz1gx98mjxnrskjb14al7l7f5wkc16mkki",
10378 "depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "ComplexHeatmap", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TFBSTools", "XVector", "circlize", "cli", "ggplot2", "glmnet", "rlang", "stabs", "tidyr"]
10379 },
10380 "monocle": {
10381 "name": "monocle",
10382 "version": "2.38.0",
10383 "sha256": "1wcxr0c1w8d5fhn2lvd36w2c613c2hyhjbn7j7ai0mp7hbr61g2p",
10384 "depends": ["Biobase", "BiocGenerics", "DDRTree", "HSMMSingleCell", "MASS", "Matrix", "RANN", "Rcpp", "Rtsne", "VGAM", "biocViews", "cluster", "combinat", "dplyr", "fastICA", "ggplot2", "igraph", "irlba", "leidenbase", "limma", "matrixStats", "pheatmap", "plyr", "proxy", "reshape2", "slam", "stringr", "tibble", "viridis"]
10385 },
10386 "mosaics": {
10387 "name": "mosaics",
10388 "version": "2.48.0",
10389 "sha256": "1fw8kkk3qgsffwrmcjrkjrq8l9hxilmjvgwxlspp3rzr0rwwc2v7",
10390 "depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "MASS", "Rcpp", "Rsamtools", "S4Vectors", "Seqinfo", "lattice"]
10391 },
10392 "mosbi": {
10393 "name": "mosbi",
10394 "version": "1.16.0",
10395 "sha256": "1bpiy4kh3md4y8qfk5z9k503mp3jk0gwh1v7i82x890l5s4bxz01",
10396 "depends": ["BH", "QUBIC", "RColorBrewer", "Rcpp", "RcppParallel", "akmbiclust", "biclust", "fabia", "igraph", "isa2", "xml2"]
10397 },
10398 "mosdef": {
10399 "name": "mosdef",
10400 "version": "1.6.0",
10401 "sha256": "0000gasgr2bc486wxygz4xinv2skvcp0p6qv8nlknimv8lz50cl8",
10402 "depends": ["AnnotationDbi", "DESeq2", "DT", "GO_db", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "clusterProfiler", "ggforce", "ggplot2", "ggrepel", "goseq", "htmltools", "rlang", "scales", "topGO"]
10403 },
10404 "motifStack": {
10405 "name": "motifStack",
10406 "version": "1.54.0",
10407 "sha256": "0vx619mlissjm6bb878l2n8jd4cb9x3d96rqjb6kj3gi4b9sys4z",
10408 "depends": ["Biostrings", "TFBSTools", "XML", "ade4", "ggplot2", "htmlwidgets"]
10409 },
10410 "motifTestR": {
10411 "name": "motifTestR",
10412 "version": "1.6.0",
10413 "sha256": "04db9zb2p3nh1md1dz8vl0428vr0m0dfvfdp5zzclww095dx78ff",
10414 "depends": ["Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "ggplot2", "harmonicmeanp", "matrixStats", "patchwork", "rlang", "universalmotif"]
10415 },
10416 "motifbreakR": {
10417 "name": "motifbreakR",
10418 "version": "2.24.0",
10419 "sha256": "0ksxil00v1s282zvsj0gjzybq46kcfay849y2syh7la7pgdw3x63",
10420 "depends": ["BSgenome", "BiocFileCache", "BiocGenerics", "BiocParallel", "Biostrings", "DT", "GenomeInfoDb", "GenomicRanges", "Gviz", "IRanges", "MotifDb", "S4Vectors", "SummarizedExperiment", "TFMPvalue", "VariantAnnotation", "biomaRt", "bsicons", "bslib", "matrixStats", "motifStack", "pwalign", "rtracklayer", "shiny", "stringr", "vroom"]
10421 },
10422 "motifcounter": {
10423 "name": "motifcounter",
10424 "version": "1.34.0",
10425 "sha256": "1mbda7hccy43ar1ii5ldn2qvbvzbmdx686kic3y6kxd03frmjb94",
10426 "depends": ["Biostrings"]
10427 },
10428 "motifmatchr": {
10429 "name": "motifmatchr",
10430 "version": "1.32.0",
10431 "sha256": "16crqy7y6iad4b29mgxisf7gp06snf7bxgkm3y06f66y8faajlyk",
10432 "depends": ["BSgenome", "Biostrings", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "RcppArmadillo", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "TFBSTools"]
10433 },
10434 "mpra": {
10435 "name": "mpra",
10436 "version": "1.32.0",
10437 "sha256": "0yqk8h7l7q4q0g4h39q1gbsfb1lqvcxrfbmn2wnl6chzbf71yszd",
10438 "depends": ["BiocGenerics", "S4Vectors", "SummarizedExperiment", "limma", "scales", "statmod"]
10439 },
10440 "msImpute": {
10441 "name": "msImpute",
10442 "version": "1.20.0",
10443 "sha256": "1gjh519b7adrczha2cfh33yqg6rz3fn27m5bydqkf1gw5hilq9wx",
10444 "depends": ["FNN", "data_table", "dplyr", "limma", "matrixStats", "mvtnorm", "pdist", "reticulate", "scran", "softImpute", "tidyr"]
10445 },
10446 "msPurity": {
10447 "name": "msPurity",
10448 "version": "1.36.0",
10449 "sha256": "004wmqqxdpdbhax112v4hidp1bxyq3h8c307cvryyz4gahqfsr0p",
10450 "depends": ["DBI", "RSQLite", "Rcpp", "dbplyr", "doSNOW", "dplyr", "fastcluster", "foreach", "ggplot2", "magrittr", "mzR", "plyr", "reshape2", "stringr"]
10451 },
10452 "msa": {
10453 "name": "msa",
10454 "version": "1.42.0",
10455 "sha256": "0ch5ghyg2wswsywwnrxjcn7dayvm9mxfnww9l38k458r6iw8s7a5",
10456 "depends": ["BiocGenerics", "Biostrings", "IRanges", "Rcpp", "S4Vectors"]
10457 },
10458 "msgbsR": {
10459 "name": "msgbsR",
10460 "version": "1.34.0",
10461 "sha256": "12gbzwvf5rdv8dl29wi8qrrzvl62vncd8q76h3x5bxwbp4dnjzrd",
10462 "depends": ["BSgenome", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "R_utils", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "easyRNASeq", "edgeR", "ggbio", "ggplot2", "plyr"]
10463 },
10464 "mslp": {
10465 "name": "mslp",
10466 "version": "1.12.0",
10467 "sha256": "0pfncr3fdcccd8pi73l5n3qpwg4m2a53grsk8izm5839xc16mwpq",
10468 "depends": ["RankProd", "data_table", "doRNG", "fmsb", "foreach", "magrittr", "org_Hs_eg_db", "pROC", "randomForest"]
10469 },
10470 "msmsEDA": {
10471 "name": "msmsEDA",
10472 "version": "1.48.0",
10473 "sha256": "1pvqw3py9hajk2dx7bwbpw4lqb0m0p9ir6l8wp7hmi0w1gv5grl4",
10474 "depends": ["MASS", "MSnbase", "RColorBrewer", "gplots"]
10475 },
10476 "msmsTests": {
10477 "name": "msmsTests",
10478 "version": "1.48.0",
10479 "sha256": "1g2fbl1x598yc2s81jb95ksw6mfp8yv5vsq8znndazf9zlfnm6r3",
10480 "depends": ["MSnbase", "edgeR", "msmsEDA", "qvalue"]
10481 },
10482 "mspms": {
10483 "name": "mspms",
10484 "version": "1.2.0",
10485 "sha256": "1nipbivljfcr87lfxp2iz6x2zfambk4s7jqyv951vywlq3p8f6pb",
10486 "depends": ["QFeatures", "SummarizedExperiment", "dplyr", "ggplot2", "ggpubr", "ggseqlogo", "heatmaply", "limma", "magrittr", "purrr", "readr", "rlang", "rstatix", "stringr", "tibble", "tidyr"]
10487 },
10488 "msqrob2": {
10489 "name": "msqrob2",
10490 "version": "1.18.0",
10491 "sha256": "0kd452vjwzqizfmqma7770bfcdsn22hk9xfhs37zqj806cadc0sn",
10492 "depends": ["BiocParallel", "MASS", "Matrix", "MultiAssayExperiment", "QFeatures", "SummarizedExperiment", "codetools", "limma", "lme4", "purrr"]
10493 },
10494 "multiClust": {
10495 "name": "multiClust",
10496 "version": "1.40.0",
10497 "sha256": "0xpjx9wv2vkq3r2r1lpjvagac93hrw9q1r3y32zzk05pakrn5fxr",
10498 "depends": ["amap", "cluster", "ctc", "dendextend", "mclust", "survival"]
10499 },
10500 "multiGSEA": {
10501 "name": "multiGSEA",
10502 "version": "1.20.0",
10503 "sha256": "0z2pscdc1il9lywckadyv3ljqkijhi4xfdvaks2z7p3dsrxs14sw",
10504 "depends": ["AnnotationDbi", "dplyr", "fgsea", "graphite", "magrittr", "metaboliteIDmapping", "metap", "rappdirs", "rlang"]
10505 },
10506 "multiHiCcompare": {
10507 "name": "multiHiCcompare",
10508 "version": "1.28.0",
10509 "sha256": "10vqacbx18vwdk23zkib9ccbs47vpvj8x7sbckhnan9y4zvdfd1j",
10510 "depends": ["BiocParallel", "GenomeInfoDb", "GenomeInfoDbData", "GenomicRanges", "HiCcompare", "aggregation", "data_table", "dplyr", "edgeR", "pbapply", "pheatmap", "qqman"]
10511 },
10512 "multiMiR": {
10513 "name": "multiMiR",
10514 "version": "1.32.0",
10515 "sha256": "02dj6aslq2vaafdsd3rfvlbfdg7bahy214w3ld0yi22chypm5m29",
10516 "depends": ["AnnotationDbi", "BiocGenerics", "RCurl", "XML", "dplyr", "purrr", "tibble"]
10517 },
10518 "multiWGCNA": {
10519 "name": "multiWGCNA",
10520 "version": "1.7.0",
10521 "sha256": "06njw4dz3fjh6g703z2k2cphrvmwf4azfg4w86iin6j67f361vz1",
10522 "depends": ["SummarizedExperiment", "WGCNA", "cowplot", "data_table", "dcanr", "dplyr", "flashClust", "ggalluvial", "ggplot2", "ggrepel", "igraph", "patchwork", "readr", "reshape2", "scales", "stringr"]
10523 },
10524 "multicrispr": {
10525 "name": "multicrispr",
10526 "version": "1.20.0",
10527 "sha256": "06ac6r9psmwx65x64clbsmsw6kzbdsbxvw9y1da23pzs37fpd1cc",
10528 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "CRISPRseek", "GenomicFeatures", "GenomicRanges", "Rbowtie", "Seqinfo", "data_table", "ggplot2", "karyoploteR", "magrittr", "plyranges", "reticulate", "rtracklayer", "stringi", "tidyr", "tidyselect"]
10529 },
10530 "multiscan": {
10531 "name": "multiscan",
10532 "version": "1.70.0",
10533 "sha256": "1spl6myhmn8zkhif8bwvdlzhm4jc648qlw928xlc60v2x5y3qb3b",
10534 "depends": ["Biobase"]
10535 },
10536 "multistateQTL": {
10537 "name": "multistateQTL",
10538 "version": "2.2.0",
10539 "sha256": "0jllxhr2pnd4p2yhpplnf784k0gcg3zh5k7593mpxcpjgrhp87b5",
10540 "depends": ["ComplexHeatmap", "QTLExperiment", "S4Vectors", "SummarizedExperiment", "circlize", "collapse", "data_table", "dplyr", "fitdistrplus", "ggplot2", "mashr", "matrixStats", "tidyr", "viridis"]
10541 },
10542 "multtest": {
10543 "name": "multtest",
10544 "version": "2.66.0",
10545 "sha256": "1jc5q1amr2q980xpa7ysp7vg9ihmypv16ph4p8jgpj4jdr1dl71h",
10546 "depends": ["Biobase", "BiocGenerics", "MASS", "survival"]
10547 },
10548 "mumosa": {
10549 "name": "mumosa",
10550 "version": "1.18.0",
10551 "sha256": "16p50lz5qnpdaa56h98a01czsn1pz12mm6z0426qz2yp14wmmi2q",
10552 "depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "BiocSingular", "DelayedArray", "DelayedMatrixStats", "IRanges", "Matrix", "S4Vectors", "ScaledMatrix", "SingleCellExperiment", "SummarizedExperiment", "batchelor", "beachmat", "igraph", "metapod", "scran", "scuttle", "uwot"]
10553 },
10554 "muscat": {
10555 "name": "muscat",
10556 "version": "1.24.0",
10557 "sha256": "0nv0qrw3cvzf6j4li2ln4xw2afdlzlpy7fn5b9cpf9g8cyn6qcqj",
10558 "depends": ["BiocParallel", "ComplexHeatmap", "DESeq2", "IHW", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "blme", "data_table", "dplyr", "edgeR", "ggplot2", "glmmTMB", "limma", "lme4", "lmerTest", "matrixStats", "progress", "purrr", "rlang", "scales", "scater", "sctransform", "scuttle", "variancePartition"]
10559 },
10560 "muscle": {
10561 "name": "muscle",
10562 "version": "3.52.0",
10563 "sha256": "08ajymh02nlsa3ks5qhnz3d59a1mdsn6vgyslzvib6g0x6ka7z42",
10564 "depends": ["Biostrings"]
10565 },
10566 "musicatk": {
10567 "name": "musicatk",
10568 "version": "2.4.0",
10569 "sha256": "1a3npb4b5a10jp09bx53636hv1xbw2fw60k0iqs7hr7r85rd25m1",
10570 "depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Hsapiens_UCSC_hg38", "BSgenome_Mmusculus_UCSC_mm10", "BSgenome_Mmusculus_UCSC_mm9", "Biostrings", "ComplexHeatmap", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "MASS", "MCMCprecision", "Matrix", "NMF", "S4Vectors", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "VariantAnnotation", "cluster", "data_table", "decompTumor2Sig", "dplyr", "factoextra", "ggplot2", "ggpubr", "ggrepel", "gridExtra", "gtools", "maftools", "magrittr", "matrixTests", "philentropy", "plotly", "rlang", "scales", "shiny", "stringi", "stringr", "tibble", "tidyr", "tidyverse", "topicmodels", "uwot"]
10571 },
10572 "mutscan": {
10573 "name": "mutscan",
10574 "version": "1.0.0",
10575 "sha256": "1xqfbljy61ir2blglvisqbgyn490mxbn6kfn68l0cjkvpz13wl51",
10576 "depends": ["BiocGenerics", "DT", "DelayedArray", "GGally", "IRanges", "Matrix", "Rcpp", "S4Vectors", "SummarizedExperiment", "csaw", "dplyr", "edgeR", "ggplot2", "ggrepel", "limma", "rlang", "rmarkdown", "tibble", "tidyr", "tidyselect", "xfun"]
10577 },
10578 "mygene": {
10579 "name": "mygene",
10580 "version": "1.46.0",
10581 "sha256": "0a142c95975yphffn8xcg76j0l0ywjw2h0r6jqpm65knhhrn009s",
10582 "depends": ["GenomicFeatures", "Hmisc", "S4Vectors", "httr", "jsonlite", "plyr", "sqldf", "txdbmaker"]
10583 },
10584 "myvariant": {
10585 "name": "myvariant",
10586 "version": "1.40.0",
10587 "sha256": "0lfpkl5y22gg4185ldgkc0y4jxpyvdl83mnzmj9m2qprszbk69r8",
10588 "depends": ["GenomeInfoDb", "Hmisc", "S4Vectors", "Seqinfo", "VariantAnnotation", "httr", "jsonlite", "magrittr", "plyr"]
10589 },
10590 "mzID": {
10591 "name": "mzID",
10592 "version": "1.48.0",
10593 "sha256": "13lav2pfn03r42krxr6mc8rm332plfs081yf18vnw69pxq0vxw43",
10594 "depends": ["ProtGenerics", "XML", "doParallel", "foreach", "iterators", "plyr"]
10595 },
10596 "mzR": {
10597 "name": "mzR",
10598 "version": "2.44.0",
10599 "sha256": "049mvigh03bdiic82ryw7cwqmgzm8ivhdv5pfs6rggaaba3awc42",
10600 "depends": ["Biobase", "BiocGenerics", "ProtGenerics", "Rcpp", "Rhdf5lib", "ncdf4"]
10601 },
10602 "ncGTW": {
10603 "name": "ncGTW",
10604 "version": "1.24.0",
10605 "sha256": "0nipay8lx0dnd2ix8sr84idazhbmc1zryh75hpry9irh80x395nb",
10606 "depends": ["BiocParallel", "Rcpp", "xcms"]
10607 },
10608 "ncRNAtools": {
10609 "name": "ncRNAtools",
10610 "version": "1.20.0",
10611 "sha256": "1zm9qfaj6pcy9y9bb80inhawmdk94a2ps603hwxpgpaa9s701if9",
10612 "depends": ["GenomicRanges", "IRanges", "S4Vectors", "ggplot2", "httr", "xml2"]
10613 },
10614 "ncdfFlow": {
10615 "name": "ncdfFlow",
10616 "version": "2.56.0",
10617 "sha256": "0431c0yxdzaq665rd59ljlsijhqx435l0zpbviy74nkcbmgip1js",
10618 "depends": ["BH", "Biobase", "BiocGenerics", "Rhdf5lib", "cpp11", "flowCore"]
10619 },
10620 "ndexr": {
10621 "name": "ndexr",
10622 "version": "1.32.0",
10623 "sha256": "16a9b4bqx877xsbk8pw9dmg3n5g7m0ych5jd1li1ljczxz4wmkql",
10624 "depends": ["RCX", "httr", "jsonlite", "plyr", "tidyr"]
10625 },
10626 "nearBynding": {
10627 "name": "nearBynding",
10628 "version": "1.20.0",
10629 "sha256": "0cl46qbm8vm6yphjn8xxva3qp7xak780b8r655111dc986xk9d5w",
10630 "depends": ["BiocGenerics", "GenomicRanges", "R_utils", "Rsamtools", "S4Vectors", "Seqinfo", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "dplyr", "ggplot2", "gplots", "magrittr", "matrixStats", "plyranges", "rlang", "rtracklayer", "transport"]
10631 },
10632 "nempi": {
10633 "name": "nempi",
10634 "version": "1.18.0",
10635 "sha256": "0naphfkdmvxshz1fh35ki5p00kd030afav67cmnk1j5sv06rysa4",
10636 "depends": ["e1071", "epiNEM", "matrixStats", "mnem", "naturalsort", "nnet", "randomForest"]
10637 },
10638 "netSmooth": {
10639 "name": "netSmooth",
10640 "version": "1.30.0",
10641 "sha256": "0hmji08nyfbb278r76dpix0qlbhn1rr9vyjjc6lx0f8qvsz4cbis",
10642 "depends": ["DelayedArray", "HDF5Array", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "cluster", "clusterExperiment", "data_table", "entropy", "scater"]
10643 },
10644 "netboost": {
10645 "name": "netboost",
10646 "version": "2.18.0",
10647 "sha256": "0kqix8n5gr79hzizfwbg78l61zqkgmpjhgvlyb2h4sl7ka1m0rna",
10648 "depends": ["BiocStyle", "R_utils", "Rcpp", "RcppParallel", "WGCNA", "colorspace", "dynamicTreeCut", "impute"]
10649 },
10650 "nethet": {
10651 "name": "nethet",
10652 "version": "1.42.0",
10653 "sha256": "0l5d5sm5wclhyv5brwzimlzb50dn9y6ls1appm2d0wnl9h806g5z",
10654 "depends": ["CompQuadForm", "GSA", "GeneNet", "ICSNP", "ggm", "ggplot2", "glasso", "glmnet", "huge", "limma", "mclust", "multtest", "mvtnorm", "network"]
10655 },
10656 "netprioR": {
10657 "name": "netprioR",
10658 "version": "1.36.0",
10659 "sha256": "1qi6nxg53pn8fkm9m4rffzrq0v6zh43057n4686c2p1knqfmz8a1",
10660 "depends": ["Matrix", "doParallel", "dplyr", "foreach", "ggplot2", "gridExtra", "pROC", "sparseMVN"]
10661 },
10662 "netresponse": {
10663 "name": "netresponse",
10664 "version": "1.70.0",
10665 "sha256": "0i7wbgx6yfcf1j2b7xwlg6ac59gjfvlxsgiq94v57ikvmplvhzh1",
10666 "depends": ["BiocStyle", "RColorBrewer", "Rgraphviz", "ggplot2", "graph", "igraph", "mclust", "minet", "plyr", "qvalue", "reshape2", "rmarkdown"]
10667 },
10668 "ngsReports": {
10669 "name": "ngsReports",
10670 "version": "2.12.0",
10671 "sha256": "07cmycg3vs4h6r06aq56r3h4ckr3fyaw0mmic29p6a5kz5b19zq3",
10672 "depends": ["BiocGenerics", "Biostrings", "checkmate", "dplyr", "forcats", "ggdendro", "ggplot2", "jsonlite", "lifecycle", "lubridate", "patchwork", "plotly", "rlang", "rmarkdown", "scales", "stringr", "tibble", "tidyr", "tidyselect", "zoo"]
10673 },
10674 "nipalsMCIA": {
10675 "name": "nipalsMCIA",
10676 "version": "1.8.0",
10677 "sha256": "1njd24qvzb3pp94rcadb4dn7h7q79s1ifizrw1b5hxc4lv19fxmr",
10678 "depends": ["ComplexHeatmap", "MultiAssayExperiment", "RSpectra", "SummarizedExperiment", "dplyr", "fgsea", "ggplot2", "pracma", "rlang", "scales"]
10679 },
10680 "nnNorm": {
10681 "name": "nnNorm",
10682 "version": "2.74.0",
10683 "sha256": "13cvpnfj3jglwnrpb301qi2lhkbgim9q0q0nzv02iwydg3034w06",
10684 "depends": ["marray", "nnet"]
10685 },
10686 "nnSVG": {
10687 "name": "nnSVG",
10688 "version": "1.14.0",
10689 "sha256": "1l4vnydyi65z6xac7scpcm7rrhgplcx9jpsjnm7npf1pi4hp6wm2",
10690 "depends": ["BRISC", "BiocParallel", "Matrix", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "matrixStats"]
10691 },
10692 "nondetects": {
10693 "name": "nondetects",
10694 "version": "2.40.0",
10695 "sha256": "0rslx17l1rd1fmb5phwknlwjpp832qg8h3pcap11nw9wzisxa5dk",
10696 "depends": ["Biobase", "HTqPCR", "arm", "limma", "mvtnorm"]
10697 },
10698 "normalize450K": {
10699 "name": "normalize450K",
10700 "version": "1.38.0",
10701 "sha256": "19bw5v7h7m4y2kzqj92rigs048ha7cqgxjnl2bqz5sq2axcqknzh",
10702 "depends": ["Biobase", "illuminaio", "quadprog"]
10703 },
10704 "normr": {
10705 "name": "normr",
10706 "version": "1.36.0",
10707 "sha256": "1knfcwrjwp6nv4pdhvihxad7xpl5pba07x9n1rsmddn6q3nhgq5l",
10708 "depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "Rcpp", "bamsignals", "qvalue", "rtracklayer"]
10709 },
10710 "notame": {
10711 "name": "notame",
10712 "version": "1.0.0",
10713 "sha256": "0dyqnjci0nc8k56hqhs9wm6xlzn593m8bprhsc4jvylpxlfi64vv",
10714 "depends": ["BiocGenerics", "BiocParallel", "S4Vectors", "SummarizedExperiment", "dplyr", "futile_logger", "ggplot2", "openxlsx", "scales", "stringr", "tidyr"]
10715 },
10716 "notameStats": {
10717 "name": "notameStats",
10718 "version": "1.0.0",
10719 "sha256": "1kw8a12z0qz5hxpwlghl4ynvwv9rpdkm8115fs591a55ppzn1rga",
10720 "depends": ["BiocGenerics", "BiocParallel", "SummarizedExperiment", "broom", "dplyr", "notame", "tibble", "tidyr"]
10721 },
10722 "notameViz": {
10723 "name": "notameViz",
10724 "version": "1.0.0",
10725 "sha256": "0hs3ckg0wff74zvmmcxpbkncxnz8hxm79vrjmzy3gfy0iwww1lhf",
10726 "depends": ["BiocGenerics", "SummarizedExperiment", "cowplot", "devEMF", "dplyr", "ggbeeswarm", "ggdendro", "ggplot2", "ggrepel", "notame", "scales", "stringr", "tibble", "tidyr"]
10727 },
10728 "npGSEA": {
10729 "name": "npGSEA",
10730 "version": "1.46.0",
10731 "sha256": "0p5d8fff2m7sgzkmasf014izjh21cbkzv5gi99ppfid8dv0p7srn",
10732 "depends": ["Biobase", "BiocGenerics", "GSEABase"]
10733 },
10734 "nuCpos": {
10735 "name": "nuCpos",
10736 "version": "1.28.0",
10737 "sha256": "07ndp9xrx9s62cajrd6d5p5y89lkmwcrbwwmbf1pz0q11ylfcd8h",
10738 "depends": []
10739 },
10740 "nucleR": {
10741 "name": "nucleR",
10742 "version": "2.42.0",
10743 "sha256": "04al07jhszkmgszpzyv9vy8dsj333h4awghznqpalifmqady2bn4",
10744 "depends": ["Biobase", "BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "ShortRead", "dplyr", "ggplot2", "magrittr"]
10745 },
10746 "nucleoSim": {
10747 "name": "nucleoSim",
10748 "version": "1.38.0",
10749 "sha256": "0f8yzw8w30kfzxanyianffhavricc9l864fda7fg8wl4jsbhpgyv",
10750 "depends": ["IRanges", "S4Vectors"]
10751 },
10752 "nullranges": {
10753 "name": "nullranges",
10754 "version": "1.16.0",
10755 "sha256": "11mdbshvsg5d60gqa9alr43h2kwz0s35pwf5ibs4z5yfry2h3hhs",
10756 "depends": ["GenomicRanges", "IRanges", "InteractionSet", "S4Vectors", "Seqinfo", "data_table", "ggplot2", "ggridges", "plyranges", "progress", "rlang", "scales"]
10757 },
10758 "occugene": {
10759 "name": "occugene",
10760 "version": "1.70.0",
10761 "sha256": "0s4lkpwd34rfp6rhhjsgm8m5gqqcy7cmlq4x1qm3iw6fpkqgvv9i",
10762 "depends": []
10763 },
10764 "octad": {
10765 "name": "octad",
10766 "version": "1.12.0",
10767 "sha256": "0ck5hm6h83cish09ha65m000bvciws5bb3a707wc9kcxcsy08g1k",
10768 "depends": ["AnnotationHub", "Biobase", "DESeq2", "EDASeq", "ExperimentHub", "GSVA", "RUVSeq", "Rfast", "S4Vectors", "data_table", "dplyr", "edgeR", "foreach", "ggplot2", "htmlwidgets", "httr", "limma", "magrittr", "octad_db", "plotly", "qpdf", "reshape2", "rhdf5"]
10769 },
10770 "odseq": {
10771 "name": "odseq",
10772 "version": "1.38.0",
10773 "sha256": "0v7j3fnpphbbmqmm96iqyz7rhv5bkx10qrikkg2zj24k4h7br18p",
10774 "depends": ["kebabs", "mclust", "msa"]
10775 },
10776 "oligo": {
10777 "name": "oligo",
10778 "version": "1.74.0",
10779 "sha256": "07kkssywxinqbkpwgjihk2lia25kgr26vdbb5icwb7xldff9s4x1",
10780 "depends": ["Biobase", "BiocGenerics", "Biostrings", "DBI", "RSQLite", "affxparser", "affyio", "bit", "ff", "oligoClasses", "preprocessCore"]
10781 },
10782 "oligoClasses": {
10783 "name": "oligoClasses",
10784 "version": "1.72.0",
10785 "sha256": "11sy2zpjj8h2wf5qjmfxq07b5bk8y58vbqr06dr9ymk3bgwwp0c8",
10786 "depends": ["Biobase", "BiocGenerics", "BiocManager", "Biostrings", "DBI", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "SummarizedExperiment", "affyio", "ff", "foreach"]
10787 },
10788 "omXplore": {
10789 "name": "omXplore",
10790 "version": "1.3.0",
10791 "sha256": "02lrmskpg560yh0aadsx6b822in3s5fvldl52ncly8pckbs7rpc8",
10792 "depends": ["DT", "FactoMineR", "MSnbase", "MultiAssayExperiment", "PSMatch", "RColorBrewer", "SummarizedExperiment", "bs4Dash", "dendextend", "dplyr", "factoextra", "gplots", "highcharter", "htmlwidgets", "nipals", "shiny", "shinyBS", "shinyjqui", "shinyjs", "thematic", "tibble", "tidyr", "vioplot", "visNetwork", "waiter"]
10793 },
10794 "omada": {
10795 "name": "omada",
10796 "version": "1.12.0",
10797 "sha256": "047lmy4c5fawz9pxnjv62jxzrb50p4vajsrnsqrxgsa5ch0rsjhs",
10798 "depends": ["Rcpp", "clValid", "diceR", "dplyr", "fpc", "genieclust", "ggplot2", "glmnet", "kernlab", "pdfCluster", "reshape"]
10799 },
10800 "omicRexposome": {
10801 "name": "omicRexposome",
10802 "version": "1.32.0",
10803 "sha256": "0244dnay1ilgsrpp9ppcr94fw7d2xaiqlcmc6bqlfd739gi8nldx",
10804 "depends": ["Biobase", "MultiDataSet", "PMA", "SmartSVA", "SummarizedExperiment", "ggplot2", "ggrepel", "gridExtra", "isva", "limma", "omicade4", "rexposome", "stringr", "sva"]
10805 },
10806 "omicade4": {
10807 "name": "omicade4",
10808 "version": "1.50.0",
10809 "sha256": "16v3hb9a980yzy05my0l14r76k1lap69zpzjndrdwp114glbhlpl",
10810 "depends": ["Biobase", "ade4", "made4"]
10811 },
10812 "omicplotR": {
10813 "name": "omicplotR",
10814 "version": "1.30.0",
10815 "sha256": "1n8f10z1r4z0q1b8qhklic7ylini5sas35i2c9snd6gllbv2ldl1",
10816 "depends": ["ALDEx2", "DT", "compositions", "jsonlite", "knitr", "matrixStats", "rmarkdown", "shiny", "vegan", "zCompositions"]
10817 },
10818 "omicsGMF": {
10819 "name": "omicsGMF",
10820 "version": "1.0.0",
10821 "sha256": "09bxkgf5qw86avbivqx2nr0apgrgs2f19gy00cwp0mprrvdnc136",
10822 "depends": ["BiocParallel", "BiocSingular", "DelayedArray", "Matrix", "MatrixGenerics", "QFeatures", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "beachmat", "ggplot2", "scater", "scuttle", "sgdGMF"]
10823 },
10824 "omicsPrint": {
10825 "name": "omicsPrint",
10826 "version": "1.30.0",
10827 "sha256": "1714n5ijcryiyamr514rhcxq4wk37d49ad96ginhsxm3x6cals38",
10828 "depends": ["MASS", "MultiAssayExperiment", "RaggedExperiment", "SummarizedExperiment", "matrixStats"]
10829 },
10830 "omicsViewer": {
10831 "name": "omicsViewer",
10832 "version": "1.14.0",
10833 "sha256": "1xnz0325s1cbfda3j77pqw4cnjh22rdb13rw4jdkwnxmr2qmc2ic",
10834 "depends": ["Biobase", "DT", "Matrix", "RColorBrewer", "ROCR", "RSQLite", "S4Vectors", "SummarizedExperiment", "beeswarm", "curl", "drc", "fastmatch", "fgsea", "flatxml", "ggplot2", "ggseqlogo", "htmlwidgets", "httr", "matrixStats", "networkD3", "openxlsx", "plotly", "psych", "reshape2", "shiny", "shinyWidgets", "shinybusy", "shinycssloaders", "shinyjs", "shinythemes", "stringr", "survival", "survminer"]
10835 },
10836 "ompBAM": {
10837 "name": "ompBAM",
10838 "version": "1.14.0",
10839 "sha256": "0qm0v3cqwc88n8l74s6lz7qa5lbfkgppag2l57k9666ry4g5j4av",
10840 "depends": ["Rcpp"]
10841 },
10842 "oncomix": {
10843 "name": "oncomix",
10844 "version": "1.32.0",
10845 "sha256": "0va465rh4405g5vsy1vwhr76gc403smi6d1b3a9gclxpsg1a2ga6",
10846 "depends": ["RColorBrewer", "SummarizedExperiment", "ggplot2", "ggrepel", "mclust"]
10847 },
10848 "oncoscanR": {
10849 "name": "oncoscanR",
10850 "version": "1.12.0",
10851 "sha256": "1nl9r29drgc22vyiqg02a3y7jf6qvkxg5m3lmcvccjb12m5986qm",
10852 "depends": ["GenomicRanges", "IRanges", "S4Vectors", "magrittr", "readr"]
10853 },
10854 "onlineFDR": {
10855 "name": "onlineFDR",
10856 "version": "2.18.0",
10857 "sha256": "0669chhzkqa9giccaxlvv02rfbjfy2b8j6rc131qxic6p8s6ni66",
10858 "depends": ["Rcpp", "RcppProgress", "progress"]
10859 },
10860 "ontoProc": {
10861 "name": "ontoProc",
10862 "version": "2.4.0",
10863 "sha256": "0wyw6gw6vwcya27w7fy11yxy9qf9wcfr5q5hx7sr86czkzrxa6fc",
10864 "depends": ["AnnotationHub", "Biobase", "BiocFileCache", "DT", "RBGL", "R_utils", "Rgraphviz", "S4Vectors", "SummarizedExperiment", "basilisk", "dplyr", "ellmer", "graph", "httr", "igraph", "jsonlite", "magrittr", "ontologyIndex", "ontologyPlot", "reticulate", "shiny"]
10865 },
10866 "openCyto": {
10867 "name": "openCyto",
10868 "version": "2.22.0",
10869 "sha256": "0sd2p8cya949zi9bf7hj2xy7kmkbvpviaxpfm3vb81ffk26z14gk",
10870 "depends": ["BH", "Biobase", "BiocGenerics", "RBGL", "RColorBrewer", "cpp11", "data_table", "flowClust", "flowCore", "flowViz", "flowWorkspace", "graph", "ncdfFlow"]
10871 },
10872 "openPrimeR": {
10873 "name": "openPrimeR",
10874 "version": "1.32.0",
10875 "sha256": "0mv43d41p3isif7mpihp0ayk2izk79b6nws90700dhs5hkh24dq4",
10876 "depends": ["BiocGenerics", "Biostrings", "DECIPHER", "GenomicRanges", "Hmisc", "IRanges", "RColorBrewer", "S4Vectors", "XML", "ape", "digest", "dplyr", "foreach", "ggplot2", "lpSolveAPI", "magrittr", "openxlsx", "plyr", "pwalign", "reshape2", "scales", "seqinr", "stringdist", "stringr", "uniqtag"]
10877 },
10878 "oposSOM": {
10879 "name": "oposSOM",
10880 "version": "2.28.0",
10881 "sha256": "0vwiizxy57xz4ha6nvpkyd5nr63p03mw3n33sq4i3pvyygbm4afj",
10882 "depends": ["Biobase", "RCurl", "Rcpp", "RcppParallel", "XML", "ape", "biomaRt", "fastICA", "fdrtool", "graph", "igraph", "pixmap", "png", "scatterplot3d", "tsne"]
10883 },
10884 "oppar": {
10885 "name": "oppar",
10886 "version": "1.38.0",
10887 "sha256": "1g9ddbw0hzypw4ipyj6llvgq7mlmff27kzqfnd6nzgym8qpjk4d8",
10888 "depends": ["Biobase", "GSEABase", "GSVA"]
10889 },
10890 "optimalFlow": {
10891 "name": "optimalFlow",
10892 "version": "1.22.0",
10893 "sha256": "13nz1583xkr0f6y2l4hmbjb2w9s0ir5bn5r3qcnpxn0yvy5iabgx",
10894 "depends": ["Rfast", "dbscan", "doParallel", "dplyr", "ellipse", "flowMeans", "foreach", "optimalFlowData", "randomForest", "rgl", "rlang", "robustbase", "transport"]
10895 },
10896 "orthogene": {
10897 "name": "orthogene",
10898 "version": "1.16.0",
10899 "sha256": "00ixwgdmjyp7x3p9d4r9da777i7zrys9wilz8lm930cv5bcqsm06",
10900 "depends": ["DelayedArray", "Matrix", "babelgene", "data_table", "dplyr", "ggplot2", "ggpubr", "ggtree", "gprofiler2", "grr", "homologene", "jsonlite", "patchwork", "repmis"]
10901 },
10902 "orthos": {
10903 "name": "orthos",
10904 "version": "1.8.0",
10905 "sha256": "1nyxc7b1gnfb9js4a6v1r3i7cs8wy9qqy5k7zjal27f3s99cdplr",
10906 "depends": ["AnnotationHub", "BiocParallel", "DelayedArray", "ExperimentHub", "HDF5Array", "S4Vectors", "SummarizedExperiment", "basilisk", "colorspace", "cowplot", "dplyr", "ggplot2", "ggpubr", "ggrepel", "ggsci", "keras", "orthosData", "plyr", "reticulate", "rlang", "tensorflow", "tidyr"]
10907 },
10908 "pRoloc": {
10909 "name": "pRoloc",
10910 "version": "1.50.0",
10911 "sha256": "08anricap3nkdfc4k8rkc1gw1qcx990sy1z4lbvf1i1wh98dgzlp",
10912 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "FNN", "LaplacesDemon", "MASS", "MLInterfaces", "MSnbase", "RColorBrewer", "Rcpp", "RcppArmadillo", "biomaRt", "caret", "class", "coda", "colorspace", "dendextend", "e1071", "ggplot2", "gtools", "hexbin", "kernlab", "knitr", "lattice", "mclust", "mixtools", "mvtnorm", "nnet", "plyr", "proxy", "randomForest", "sampling", "scales"]
10913 },
10914 "pRolocGUI": {
10915 "name": "pRolocGUI",
10916 "version": "2.20.0",
10917 "sha256": "05qcpz6y528al8kfxhv330gin970dvs7gbl9bw8l3lnbk1l8vg4a",
10918 "depends": ["Biobase", "BiocGenerics", "DT", "MSnbase", "colorspace", "colourpicker", "dplyr", "ggplot2", "pRoloc", "scales", "shiny", "shinyWidgets", "shinydashboard", "shinydashboardPlus", "shinyhelper", "shinyjs"]
10919 },
10920 "packFinder": {
10921 "name": "packFinder",
10922 "version": "1.22.0",
10923 "sha256": "0hl8s4g0v4l5xy5dngr6zjjwbbbz6wr27qwy1win87khfnxsjilr",
10924 "depends": ["Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "ape", "kmer"]
10925 },
10926 "padma": {
10927 "name": "padma",
10928 "version": "1.20.0",
10929 "sha256": "0mhy9cm7xfl4c6wnvhrmddvn6d4kplpv1fzcwx3ph2ii2ai4w5l5",
10930 "depends": ["FactoMineR", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment"]
10931 },
10932 "pageRank": {
10933 "name": "pageRank",
10934 "version": "1.20.0",
10935 "sha256": "1rfa57k71xzy7ccbyk77nrsxpvz0xb6mnrnazzrssz7q007i209x",
10936 "depends": ["GenomicRanges", "igraph", "motifmatchr"]
10937 },
10938 "paircompviz": {
10939 "name": "paircompviz",
10940 "version": "1.48.0",
10941 "sha256": "08dw95ny9lxgjz1wk4xsgggkgnvpp1wd4svl43499hnsgc92i60j",
10942 "depends": ["Rgraphviz"]
10943 },
10944 "pairedGSEA": {
10945 "name": "pairedGSEA",
10946 "version": "1.10.0",
10947 "sha256": "1gkgkcajnm2m2277lnkdwyg6107w5d7089ba2gh8dbl5q9krbka2",
10948 "depends": ["BiocParallel", "DESeq2", "DEXSeq", "S4Vectors", "SummarizedExperiment", "aggregation", "fgsea", "ggplot2", "limma", "msigdbr", "showtext", "sva"]
10949 },
10950 "pairkat": {
10951 "name": "pairkat",
10952 "version": "1.16.0",
10953 "sha256": "18h2ykss8x6j7gg0apbirvigh386v4hyli5m2hyfza46ncxllnvw",
10954 "depends": ["CompQuadForm", "KEGGREST", "SummarizedExperiment", "data_table", "igraph", "magrittr", "tibble"]
10955 },
10956 "pandaR": {
10957 "name": "pandaR",
10958 "version": "1.42.0",
10959 "sha256": "031wsqbn8a13cdlfa6139r9s7d8bzvyy7rknaakd5bmrjd6zark5",
10960 "depends": ["Biobase", "BiocGenerics", "RUnit", "ggplot2", "hexbin", "igraph", "matrixStats", "plyr", "reshape"]
10961 },
10962 "panelcn_mops": {
10963 "name": "panelcn.mops",
10964 "version": "1.32.0",
10965 "sha256": "0dp7apinz8921r7zlwxw5axjxr0v53za04jkqywip2q4wc3y30d1",
10966 "depends": ["GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "cn_mops"]
10967 },
10968 "panp": {
10969 "name": "panp",
10970 "version": "1.80.0",
10971 "sha256": "0gsikpbsqww8z7zf69cj0s0q2h80yld9455mi5pqm1a6nmylcvnw",
10972 "depends": ["Biobase", "affy"]
10973 },
10974 "parglms": {
10975 "name": "parglms",
10976 "version": "1.42.0",
10977 "sha256": "0a48b48nw43ydmmfk9rkrmk400gyk6q4rjjnihbbx8gkxzinihld",
10978 "depends": ["BatchJobs", "BiocGenerics", "doParallel", "foreach"]
10979 },
10980 "parody": {
10981 "name": "parody",
10982 "version": "1.68.0",
10983 "sha256": "0542fwhxjkca8lc5yahmz4fxk571q2vllzlv9rixrnn3v32dphgy",
10984 "depends": []
10985 },
10986 "partCNV": {
10987 "name": "partCNV",
10988 "version": "1.8.0",
10989 "sha256": "1z3qzsc5nqp4jnpvhyip7dhknjmlpgalxjaid378j2x62dmg4xcq",
10990 "depends": ["AnnotationHub", "BiocStyle", "GenomicRanges", "Seurat", "SingleCellExperiment", "data_table", "depmixS4", "magrittr"]
10991 },
10992 "pathMED": {
10993 "name": "pathMED",
10994 "version": "1.2.0",
10995 "sha256": "0z4dd84a3jg17pcr9r6zfdmw7371ypqfm7ppxrcl4qry1cgn49n6",
10996 "depends": ["BiocParallel", "FactoMineR", "GSVA", "caret", "caretEnsemble", "decoupleR", "dplyr", "factoextra", "ggplot2", "magrittr", "matrixStats", "metrica", "pbapply", "reshape2", "singscore", "stringi"]
10997 },
10998 "pathRender": {
10999 "name": "pathRender",
11000 "version": "1.78.0",
11001 "sha256": "1c2a7m9b0lbglmmk5g6ci0zvc2gc5zaskiaggzgrwjvg7209zhcw",
11002 "depends": ["AnnotationDbi", "RColorBrewer", "Rgraphviz", "cMAP", "graph"]
11003 },
11004 "pathifier": {
11005 "name": "pathifier",
11006 "version": "1.48.0",
11007 "sha256": "1bkbb7p4dr4ar539h78zxl3l5sz207np48nbjr2vpri7749mi6n7",
11008 "depends": ["R_oo", "princurve"]
11009 },
11010 "pathlinkR": {
11011 "name": "pathlinkR",
11012 "version": "1.6.0",
11013 "sha256": "1qrm1bkxgyngbqi3i8b8jrlbin431ii0x83448gllnj6mi8yc2w7",
11014 "depends": ["ComplexHeatmap", "circlize", "clusterProfiler", "dplyr", "fgsea", "ggforce", "ggplot2", "ggpubr", "ggraph", "ggrepel", "igraph", "purrr", "sigora", "stringr", "tibble", "tidygraph", "tidyr", "vegan", "visNetwork"]
11015 },
11016 "pathview": {
11017 "name": "pathview",
11018 "version": "1.50.0",
11019 "sha256": "1cs3nh196wcfphngyx1h0flv0fhydvjyvk1rpq8jc53mcjsdzh5b",
11020 "depends": ["AnnotationDbi", "KEGGREST", "KEGGgraph", "Rgraphviz", "XML", "graph", "org_Hs_eg_db", "png"]
11021 },
11022 "pathwayPCA": {
11023 "name": "pathwayPCA",
11024 "version": "1.26.0",
11025 "sha256": "0rpak1n9qxwysf5s5hq7b1p41jplljg81k2rzwskfanqyizqib2n",
11026 "depends": ["lars", "survival"]
11027 },
11028 "pcaExplorer": {
11029 "name": "pcaExplorer",
11030 "version": "3.4.0",
11031 "sha256": "0kaih7vach7a93fl4c5r7fnw3xmdvbwkhlpq31rca6wgsx617964",
11032 "depends": ["AnnotationDbi", "DESeq2", "DT", "GO_db", "GOstats", "GenomicRanges", "IRanges", "NMF", "S4Vectors", "SummarizedExperiment", "base64enc", "biomaRt", "genefilter", "ggplot2", "ggrepel", "heatmaply", "knitr", "limma", "mosdef", "pheatmap", "plotly", "plyr", "rmarkdown", "scales", "shiny", "shinyAce", "shinyBS", "shinydashboard", "threejs", "tidyr", "topGO"]
11033 },
11034 "pcaMethods": {
11035 "name": "pcaMethods",
11036 "version": "2.2.0",
11037 "sha256": "1ap5czsqg07vj5vy5gmiivpxgdgh14qb0193nxlil0w303a4q37r",
11038 "depends": ["Biobase", "BiocGenerics", "MASS", "Rcpp"]
11039 },
11040 "pdInfoBuilder": {
11041 "name": "pdInfoBuilder",
11042 "version": "1.74.0",
11043 "sha256": "190cg2c2631v33rckcywryasz7g9kggfba13p9cmi9xbqk3czj3v",
11044 "depends": ["Biobase", "BiocGenerics", "Biostrings", "DBI", "IRanges", "RSQLite", "S4Vectors", "affxparser", "oligo", "oligoClasses"]
11045 },
11046 "peakCombiner": {
11047 "name": "peakCombiner",
11048 "version": "1.0.0",
11049 "sha256": "0pnv5kx3mcdp6xblpgb6vd34pzf7z3x2ikq10l4cais6df5mzhkk",
11050 "depends": ["GenomicRanges", "IRanges", "Seqinfo", "dplyr", "here", "purrr", "readr", "rlang", "stringr", "tibble", "tidyr", "tidyselect"]
11051 },
11052 "peakPantheR": {
11053 "name": "peakPantheR",
11054 "version": "1.24.0",
11055 "sha256": "0hgm0zz5m7nkpv7ypxq90dgk0rwm45ija9m3j6gjb2vibzgfxxws",
11056 "depends": ["DT", "MSnbase", "XML", "bslib", "doParallel", "foreach", "ggplot2", "gridExtra", "lubridate", "minpack_lm", "mzR", "pracma", "scales", "shiny", "shinycssloaders", "stringr", "svglite"]
11057 },
11058 "peco": {
11059 "name": "peco",
11060 "version": "1.22.0",
11061 "sha256": "1jznh029nc8174hrxy3i47q4z4ls16axiif18c0y5hn06yrvcvqa",
11062 "depends": ["SingleCellExperiment", "SummarizedExperiment", "assertthat", "circular", "conicfit", "doParallel", "foreach", "genlasso", "scater"]
11063 },
11064 "pengls": {
11065 "name": "pengls",
11066 "version": "1.16.0",
11067 "sha256": "1fkg112am6rmn340rmcdc4rxmm7f1zkndszlli3s97p8xh5h9s9k",
11068 "depends": ["BiocParallel", "glmnet", "nlme"]
11069 },
11070 "pepStat": {
11071 "name": "pepStat",
11072 "version": "1.44.0",
11073 "sha256": "1dnxrhw94sprqjjhbm48gz9amsyis0vsa4m8zv48jv3h4m4rbmz5",
11074 "depends": ["Biobase", "GenomicRanges", "IRanges", "data_table", "fields", "ggplot2", "limma", "plyr"]
11075 },
11076 "pepXMLTab": {
11077 "name": "pepXMLTab",
11078 "version": "1.44.0",
11079 "sha256": "0vp6ysb86g8760qjnmr7rkf131fga1mm80xkrg6ri3q9r7h85q59",
11080 "depends": ["XML"]
11081 },
11082 "periodicDNA": {
11083 "name": "periodicDNA",
11084 "version": "1.20.0",
11085 "sha256": "1lqj3bixj6b0xmr1qb4h0myqza1zgqs2wp4fy52vxcraqszg859l",
11086 "depends": ["BSgenome", "BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "cowplot", "ggplot2", "magrittr", "rtracklayer", "zoo"]
11087 },
11088 "pfamAnalyzeR": {
11089 "name": "pfamAnalyzeR",
11090 "version": "1.10.0",
11091 "sha256": "0cyrhn73hnqq29y2p48bfdrx710yc1m1k9pr83d86y29cz2vz86k",
11092 "depends": ["dplyr", "magrittr", "readr", "stringr", "tibble"]
11093 },
11094 "pgca": {
11095 "name": "pgca",
11096 "version": "1.34.0",
11097 "sha256": "1p76g6yj0z20rbwcpdzxaahr88aa89ny92hs2rffprrr6l374yl0",
11098 "depends": []
11099 },
11100 "pgxRpi": {
11101 "name": "pgxRpi",
11102 "version": "1.6.0",
11103 "sha256": "1mzgyvy16ccn8g5h1i4fcimxg21h5p8a16dxrvgihpdhqrvy0zls",
11104 "depends": ["GenomicRanges", "S4Vectors", "SummarizedExperiment", "attempt", "circlize", "dplyr", "future", "future_apply", "ggplot2", "httr", "lubridate", "survival", "survminer", "yaml"]
11105 },
11106 "phantasus": {
11107 "name": "phantasus",
11108 "version": "1.29.0",
11109 "sha256": "1nryfgrxzwj90661sfkllq7qcw5svwbs1fiw3bky7rakw7imi2dp",
11110 "depends": ["AnnotationDbi", "Biobase", "DESeq2", "GEOquery", "Matrix", "Rook", "XML", "apeglm", "assertthat", "ccaPP", "config", "curl", "data_table", "edgeR", "fgsea", "fs", "ggplot2", "gtable", "htmltools", "httpuv", "httr", "jsonlite", "limma", "opencpu", "phantasusLite", "pheatmap", "protolite", "rhdf5", "rhdf5client", "scales", "stringr", "svglite", "tidyr", "yaml"]
11111 },
11112 "phantasusLite": {
11113 "name": "phantasusLite",
11114 "version": "1.8.0",
11115 "sha256": "0fab348czij6snfy99ijjfnk537wpm4p1q0bsrn09hlaazrh3kbi",
11116 "depends": ["Biobase", "data_table", "httr", "rhdf5client", "stringr"]
11117 },
11118 "phenoTest": {
11119 "name": "phenoTest",
11120 "version": "1.58.0",
11121 "sha256": "0n867ahsz1sqfg5wbn1b50lr02h38bxjywx9a1npxxiwjha3n7n5",
11122 "depends": ["AnnotationDbi", "BMA", "Biobase", "Category", "GSEABase", "Heatplus", "Hmisc", "annotate", "biomaRt", "ellipse", "genefilter", "ggplot2", "gplots", "hgu133a_db", "hopach", "limma", "mgcv", "survival", "xtable"]
11123 },
11124 "phenomis": {
11125 "name": "phenomis",
11126 "version": "1.12.0",
11127 "sha256": "1sdscv053v7zy1zjw2h39l1rmx0m7crifzx2b4w1gd351qzh8shc",
11128 "depends": ["Biobase", "MultiAssayExperiment", "MultiDataSet", "PMCMRplus", "RColorBrewer", "SummarizedExperiment", "VennDiagram", "biodb", "biodbChebi", "data_table", "futile_logger", "ggplot2", "ggrepel", "htmlwidgets", "igraph", "limma", "plotly", "ranger", "ropls", "tibble", "tidyr"]
11129 },
11130 "phenopath": {
11131 "name": "phenopath",
11132 "version": "1.34.0",
11133 "sha256": "14n6fm498la467c920qmqxc0scka25zj7939rk91pz1jg9lr93dh",
11134 "depends": ["Rcpp", "SummarizedExperiment", "dplyr", "ggplot2", "tibble", "tidyr"]
11135 },
11136 "philr": {
11137 "name": "philr",
11138 "version": "1.36.0",
11139 "sha256": "1jvhfz81zyvd6ww57p0hjra43jf3hzpjz9fkxrnqy3i6ngx66a47",
11140 "depends": ["ape", "ggplot2", "ggtree", "phangorn", "tidyr"]
11141 },
11142 "phosphonormalizer": {
11143 "name": "phosphonormalizer",
11144 "version": "1.34.0",
11145 "sha256": "16lx57gii5mwny2ql08qhxpd3kpbsbzlv122gff7yv3dsxhbirz9",
11146 "depends": ["matrixStats", "plyr"]
11147 },
11148 "phyloseq": {
11149 "name": "phyloseq",
11150 "version": "1.54.0",
11151 "sha256": "000a4ksians9qxjfcr89qd1h6pr127h2mfjz607sl1h0kml1hiiv",
11152 "depends": ["Biobase", "BiocGenerics", "Biostrings", "ade4", "ape", "biomformat", "cluster", "data_table", "foreach", "ggplot2", "igraph", "multtest", "plyr", "reshape2", "scales", "vegan"]
11153 },
11154 "piano": {
11155 "name": "piano",
11156 "version": "2.26.0",
11157 "sha256": "0z0dikcqcpd9fw5id4yvgx1kcri3n111zwizrgc80zybcr58s0w2",
11158 "depends": ["Biobase", "BiocGenerics", "DT", "fgsea", "gplots", "htmlwidgets", "igraph", "marray", "relations", "scales", "shiny", "shinydashboard", "shinyjs", "visNetwork"]
11159 },
11160 "pickgene": {
11161 "name": "pickgene",
11162 "version": "1.82.0",
11163 "sha256": "0ishdijjpww0vhmyi7r1sdyhsqkyv4csj70wz972kg2gwwdw7df5",
11164 "depends": ["MASS"]
11165 },
11166 "pipeComp": {
11167 "name": "pipeComp",
11168 "version": "1.20.0",
11169 "sha256": "12rzvmikam9rcy30739689xgizhli94mzv596gcbki9xax5s9h7y",
11170 "depends": ["BiocParallel", "ComplexHeatmap", "Matrix", "RColorBrewer", "Rtsne", "S4Vectors", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "aricode", "circlize", "clue", "cluster", "cowplot", "dplyr", "ggplot2", "intrinsicDimension", "knitr", "matrixStats", "randomcoloR", "reshape2", "scales", "scater", "scran", "uwot", "viridisLite"]
11171 },
11172 "pipeFrame": {
11173 "name": "pipeFrame",
11174 "version": "1.26.0",
11175 "sha256": "0rg01a3jprmicj6wqbvysdwgsmjmhnbfbsmhblbr5spzbci17lm1",
11176 "depends": ["BSgenome", "Biostrings", "Seqinfo", "digest", "magrittr", "rmarkdown", "visNetwork"]
11177 },
11178 "planet": {
11179 "name": "planet",
11180 "version": "1.18.0",
11181 "sha256": "0wzmbip9abl6ism4504c01nv57sjm4g7rl25zk8g7vjllvry67lb",
11182 "depends": ["dplyr", "magrittr", "tibble"]
11183 },
11184 "planttfhunter": {
11185 "name": "planttfhunter",
11186 "version": "1.10.0",
11187 "sha256": "0has9lyfn3vxlwhw62c1fwdpqdczvchi2z8qm01v5jvmmk88lgfh",
11188 "depends": ["Biostrings", "SummarizedExperiment"]
11189 },
11190 "plasmut": {
11191 "name": "plasmut",
11192 "version": "1.8.0",
11193 "sha256": "01f7kzid0b8qaw73gcsljlr2mw2gmdvg9pmv6qcyq7vprch2xsf0",
11194 "depends": ["dplyr", "tibble"]
11195 },
11196 "plgem": {
11197 "name": "plgem",
11198 "version": "1.82.0",
11199 "sha256": "00y34si5xcp7va8paxqfg6hbd6f4s8r6myrz0rh2280173nwyfz3",
11200 "depends": ["Biobase", "MASS"]
11201 },
11202 "plier": {
11203 "name": "plier",
11204 "version": "1.80.0",
11205 "sha256": "16b31r42lgna7yk692ann6p16n446qjl5aph83v4cjwgrnqvj42z",
11206 "depends": ["Biobase", "affy"]
11207 },
11208 "plotGrouper": {
11209 "name": "plotGrouper",
11210 "version": "1.28.0",
11211 "sha256": "1s7n1rwl736hx1awjh39dgb4z3rllkbm3xxmrs74v4ibxphlccv0",
11212 "depends": ["Hmisc", "colourpicker", "dplyr", "egg", "ggplot2", "ggpubr", "gridExtra", "gtable", "magrittr", "readr", "readxl", "rlang", "scales", "shiny", "shinythemes", "stringr", "tibble", "tidyr"]
11213 },
11214 "plotgardener": {
11215 "name": "plotgardener",
11216 "version": "1.16.0",
11217 "sha256": "1cbxmk2imna9gw3khzzjzhfa75sanqx7hhw0qzhhh2f0szj8z1s3",
11218 "depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "Rcpp", "curl", "data_table", "dplyr", "ggplotify", "glue", "plyranges", "purrr", "rhdf5", "rlang", "strawr", "withr"]
11219 },
11220 "plyinteractions": {
11221 "name": "plyinteractions",
11222 "version": "1.8.0",
11223 "sha256": "1k5vvja82dyyfl8fidybxmm81q69y636dfl9pcb7mljp8b97b9k7",
11224 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "InteractionSet", "S4Vectors", "Seqinfo", "dplyr", "plyranges", "rlang", "tibble", "tidyselect"]
11225 },
11226 "plyranges": {
11227 "name": "plyranges",
11228 "version": "1.30.0",
11229 "sha256": "0ci212srw0pkps3xvnx92qvxnmvf897wvik9x18wkxh07k5b45r8",
11230 "depends": ["BiocGenerics", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "dplyr", "magrittr", "rlang", "rtracklayer", "tidyselect"]
11231 },
11232 "plyxp": {
11233 "name": "plyxp",
11234 "version": "1.4.0",
11235 "sha256": "1gl95ck1hmffbfvhkl0kvhmk3nnvg7qjkn9knxvjwhyl3qbl1iyw",
11236 "depends": ["S4Vectors", "S7", "SummarizedExperiment", "cli", "dplyr", "glue", "pillar", "purrr", "rlang", "tibble", "tidyr", "tidyselect", "vctrs"]
11237 },
11238 "pmm": {
11239 "name": "pmm",
11240 "version": "1.42.0",
11241 "sha256": "0py4aw2p37h3nq87g1fwjx342g89wbv0z8kvxj74ljkyjrdi9cbh",
11242 "depends": ["lme4"]
11243 },
11244 "pmp": {
11245 "name": "pmp",
11246 "version": "1.21.0",
11247 "sha256": "1dprxhggfdxcrj2s3fwhlhi6abppkvi63f2mxgjmfxflj2x9zjjp",
11248 "depends": ["S4Vectors", "SummarizedExperiment", "ggplot2", "impute", "matrixStats", "missForest", "pcaMethods", "reshape2"]
11249 },
11250 "podkat": {
11251 "name": "podkat",
11252 "version": "1.42.0",
11253 "sha256": "04438ik0sivkql3vj9jfjfqrwp3i6a7knp0ciqhrf6ij7da9j57c",
11254 "depends": ["BSgenome", "Biobase", "BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "Rhtslib", "Rsamtools", "Seqinfo"]
11255 },
11256 "poem": {
11257 "name": "poem",
11258 "version": "1.2.0",
11259 "sha256": "1i13vcz0y32j8i1ljir5r8py6kz5vmdih8v4ykxmr0mbabh4rc5p",
11260 "depends": ["BiocNeighbors", "BiocParallel", "Matrix", "SpatialExperiment", "SummarizedExperiment", "aricode", "bluster", "clevr", "clue", "cluster", "elsa", "fclust", "igraph", "matrixStats", "mclustcomp", "pdist", "sp", "spdep"]
11261 },
11262 "pogos": {
11263 "name": "pogos",
11264 "version": "1.30.0",
11265 "sha256": "1g7xbq2a195v7r33psshq8080hfh2kn2daa78665mn16k6kmchzb",
11266 "depends": ["S4Vectors", "ggplot2", "httr", "ontoProc", "rjson", "shiny"]
11267 },
11268 "powerTCR": {
11269 "name": "powerTCR",
11270 "version": "1.30.0",
11271 "sha256": "1j7c8cg5zv1d1p1rjw1f1ai75023gd3lz5cyyj5a0r7kgblpdnfd",
11272 "depends": ["VGAM", "cubature", "doParallel", "evmix", "foreach", "magrittr", "purrr", "truncdist", "vegan"]
11273 },
11274 "ppcseq": {
11275 "name": "ppcseq",
11276 "version": "1.18.0",
11277 "sha256": "1j5jp7g9q4l89abivhsdjvi18sy7fx4axqf2rp3mppnhfqjcnkfg",
11278 "depends": ["BH", "Rcpp", "RcppEigen", "RcppParallel", "StanHeaders", "benchmarkme", "dplyr", "edgeR", "foreach", "ggplot2", "lifecycle", "magrittr", "purrr", "rlang", "rstan", "rstantools", "tibble", "tidybayes", "tidyr"]
11279 },
11280 "pqsfinder": {
11281 "name": "pqsfinder",
11282 "version": "2.26.0",
11283 "sha256": "0giy76czahjvafvvylg619dc1wk50svjrhmxa1gmbb8hxa8ajf0z",
11284 "depends": ["BH", "Biostrings", "GenomicRanges", "IRanges", "Rcpp", "S4Vectors"]
11285 },
11286 "pram": {
11287 "name": "pram",
11288 "version": "1.26.0",
11289 "sha256": "0h9335p8b2g4g94yf17jp66swl74l5sf9f82y8jrw0flhw7qwsgw",
11290 "depends": ["BiocGenerics", "BiocParallel", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "data_table", "rtracklayer"]
11291 },
11292 "prebs": {
11293 "name": "prebs",
11294 "version": "1.50.0",
11295 "sha256": "0wi5s05mhs0gw53vrqv1m54d01p1wf7b723zj6all5108482l0fc",
11296 "depends": ["Biobase", "GenomicAlignments", "GenomicRanges", "IRanges", "RPA", "S4Vectors", "Seqinfo", "affy"]
11297 },
11298 "preciseTAD": {
11299 "name": "preciseTAD",
11300 "version": "1.20.0",
11301 "sha256": "0q6a0w6la5799mhr8isdqqsk83bkr7d6yaqnhd8fbk0grwgnrbfs",
11302 "depends": ["GenomicRanges", "IRanges", "ModelMetrics", "PRROC", "S4Vectors", "caret", "cluster", "dbscan", "doSNOW", "e1071", "foreach", "gtools", "pROC", "pbapply", "rCGH", "randomForest"]
11303 },
11304 "preprocessCore": {
11305 "name": "preprocessCore",
11306 "version": "1.72.0",
11307 "sha256": "0kc8af6kcp10iassdfxlx5nj63837dgv2gi23pwznz0lf4ihawj4",
11308 "depends": []
11309 },
11310 "primirTSS": {
11311 "name": "primirTSS",
11312 "version": "1.28.0",
11313 "sha256": "1s3kkx5ykgx8lf075hf581w84g9i0gvp0qhz9l31pvr6h2fgq5cx",
11314 "depends": ["BSgenome_Hsapiens_UCSC_hg38", "BiocGenerics", "Biostrings", "GenomicRanges", "GenomicScores", "Gviz", "IRanges", "JASPAR2018", "R_utils", "S4Vectors", "TFBSTools", "dplyr", "phastCons100way_UCSC_hg38", "purrr", "rtracklayer", "shiny", "stringr", "tibble", "tidyr"]
11315 },
11316 "proActiv": {
11317 "name": "proActiv",
11318 "version": "1.20.0",
11319 "sha256": "1p9wzwv1i4zps487g2vazxbw3p12vsr14ipmjk34ab3wh8bx3iqy",
11320 "depends": ["AnnotationDbi", "BiocParallel", "DESeq2", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "data_table", "dplyr", "ggplot2", "gplots", "rlang", "scales", "tibble", "txdbmaker"]
11321 },
11322 "proBAMr": {
11323 "name": "proBAMr",
11324 "version": "1.44.0",
11325 "sha256": "0j9znhzrbv0xi78lpjs9fa98f0g3j8hsy01fx1r0kadbdblnlngy",
11326 "depends": ["AnnotationDbi", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "rtracklayer", "txdbmaker"]
11327 },
11328 "proDA": {
11329 "name": "proDA",
11330 "version": "1.24.0",
11331 "sha256": "1f67rsnmc71nsza73aw9v6x9lkpbgsz0h8gkyy7ay61dqlfmpd17",
11332 "depends": ["BiocGenerics", "S4Vectors", "SummarizedExperiment", "extraDistr"]
11333 },
11334 "procoil": {
11335 "name": "procoil",
11336 "version": "2.38.0",
11337 "sha256": "08a0r51zwnapdn6l3arlaiq23qhwa93mj5s1jakssfn85if68fxl",
11338 "depends": ["Biostrings", "S4Vectors", "kebabs"]
11339 },
11340 "profileScoreDist": {
11341 "name": "profileScoreDist",
11342 "version": "1.38.0",
11343 "sha256": "1md6hgyc5mlcgjqh51wk1g0n0zrdr1mcqn27y8kagmrvz04js383",
11344 "depends": ["BiocGenerics", "Rcpp"]
11345 },
11346 "progeny": {
11347 "name": "progeny",
11348 "version": "1.32.0",
11349 "sha256": "0hlibwsk7b15n83qpwlk5ahlrqvi8qvwahwv5bs8ydkfkgaywhr4",
11350 "depends": ["Biobase", "decoupleR", "dplyr", "ggplot2", "ggrepel", "gridExtra", "reshape2", "tidyr"]
11351 },
11352 "projectR": {
11353 "name": "projectR",
11354 "version": "1.26.0",
11355 "sha256": "1lh43myc9z3cdg1anm2wdm3h0188kvaf7ihy0h35kd3qj6icr018",
11356 "depends": ["Matrix", "MatrixModels", "NMF", "RColorBrewer", "ROCR", "SingleCellExperiment", "cluster", "cowplot", "dplyr", "fgsea", "ggalluvial", "ggplot2", "ggrepel", "limma", "msigdbr", "reshape2", "scales", "tsne", "umap", "viridis"]
11357 },
11358 "protGear": {
11359 "name": "protGear",
11360 "version": "1.14.0",
11361 "sha256": "086k582c3npqmcj8j2fdyc3x80cdfd9ywl5r9yaig7ss86h9p7fm",
11362 "depends": ["Biobase", "FactoMineR", "GGally", "Kendall", "MASS", "data_table", "dplyr", "factoextra", "flexdashboard", "genefilter", "ggplot2", "ggpubr", "gtools", "htmltools", "knitr", "limma", "magrittr", "pheatmap", "plotly", "plyr", "purrr", "readr", "remotes", "rlang", "rmarkdown", "shiny", "shinydashboard", "styler", "tibble", "tidyr", "vsn"]
11363 },
11364 "proteinProfiles": {
11365 "name": "proteinProfiles",
11366 "version": "1.50.0",
11367 "sha256": "0ddzzap6wglf8fi1d916i2nfqryrifg7gg24xlr8slwj5c99k065",
11368 "depends": []
11369 },
11370 "psichomics": {
11371 "name": "psichomics",
11372 "version": "1.36.0",
11373 "sha256": "1f20ldcjlbj0r07xq4pxny7bnmx74pmc9y72gkp1n639f179n5vw",
11374 "depends": ["AnnotationDbi", "AnnotationHub", "BiocFileCache", "DT", "R_utils", "Rcpp", "Rfast", "SummarizedExperiment", "XML", "cluster", "colourpicker", "data_table", "digest", "dplyr", "edgeR", "fastICA", "fastmatch", "ggplot2", "ggrepel", "highcharter", "htmltools", "httr", "jsonlite", "limma", "pairsD3", "plyr", "purrr", "recount", "reshape2", "shiny", "shinyBS", "shinyjs", "stringr", "survival", "xtable"]
11375 },
11376 "ptairMS": {
11377 "name": "ptairMS",
11378 "version": "1.18.0",
11379 "sha256": "0cxachz3wpnq8g641f24ghgy0byr3dfy1izagg754i4sdlq2097q",
11380 "depends": ["Biobase", "DT", "Hmisc", "MSnbase", "Rcpp", "bit64", "chron", "data_table", "doParallel", "enviPat", "foreach", "ggplot2", "ggpubr", "gridExtra", "minpack_lm", "plotly", "rhdf5", "rlang", "scales", "shiny", "shinyscreenshot", "signal"]
11381 },
11382 "puma": {
11383 "name": "puma",
11384 "version": "3.52.0",
11385 "sha256": "00c2h2bzlpxc7hg04dn1vikydhfdfc86f55qdv73y96cpk6sa0c7",
11386 "depends": ["Biobase", "affy", "affyio", "mclust", "oligo", "oligoClasses"]
11387 },
11388 "pvac": {
11389 "name": "pvac",
11390 "version": "1.58.0",
11391 "sha256": "0x46n6f96k7ifn29sl6k4aassin42897dhjd1nr0gpiwpgvrsygd",
11392 "depends": ["Biobase", "affy"]
11393 },
11394 "pvca": {
11395 "name": "pvca",
11396 "version": "1.50.0",
11397 "sha256": "0bh1snrzx1p73b3xn1ddqpvqr1s3rycb0ffhlwpdxrmf3d7ykcgp",
11398 "depends": ["Biobase", "Matrix", "lme4", "vsn"]
11399 },
11400 "pwalign": {
11401 "name": "pwalign",
11402 "version": "1.6.0",
11403 "sha256": "1f5py5xip1nd2qpa9fhfkxz9sznq8j3pcjpcaq8pydz7psy2jpin",
11404 "depends": ["BiocGenerics", "Biostrings", "IRanges", "S4Vectors", "XVector"]
11405 },
11406 "qPLEXanalyzer": {
11407 "name": "qPLEXanalyzer",
11408 "version": "1.27.0",
11409 "sha256": "0xbb933yhfbmgibjzic342rci3sw9dwxgz5wxgxfmzqwyivjp3px",
11410 "depends": ["Biobase", "BiocGenerics", "Biostrings", "IRanges", "MSnbase", "RColorBrewer", "assertthat", "dplyr", "ggdendro", "ggplot2", "limma", "magrittr", "preprocessCore", "purrr", "readr", "rlang", "scales", "stringr", "tibble", "tidyr", "tidyselect"]
11411 },
11412 "qcmetrics": {
11413 "name": "qcmetrics",
11414 "version": "1.48.0",
11415 "sha256": "1si14qxh8ki0ihjfvyjr4kxi1iqcbb48g0q50i7hnq6aydfc18qw",
11416 "depends": ["Biobase", "S4Vectors", "knitr", "pander", "xtable"]
11417 },
11418 "qmtools": {
11419 "name": "qmtools",
11420 "version": "1.14.0",
11421 "sha256": "06kpza9mrmkhpwsr7d8mwr1pflmq4hirgbgywqqjp0pp7r0ykq2g",
11422 "depends": ["MsCoreUtils", "SummarizedExperiment", "VIM", "ggplot2", "heatmaply", "igraph", "limma", "patchwork", "rlang", "scales"]
11423 },
11424 "qpcrNorm": {
11425 "name": "qpcrNorm",
11426 "version": "1.68.0",
11427 "sha256": "1zs7zfjv8nck70wfb62ypcwpx0m3i7m9gcanswphjf7rhhdnwlr1",
11428 "depends": ["Biobase", "affy", "limma"]
11429 },
11430 "qpgraph": {
11431 "name": "qpgraph",
11432 "version": "2.44.0",
11433 "sha256": "0qb4jczksj174wzfvzdhyj1bv4ijmhi25zdhshf54sp62jg02n10",
11434 "depends": ["AnnotationDbi", "Biobase", "BiocParallel", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "Rgraphviz", "S4Vectors", "Seqinfo", "annotate", "graph", "mvtnorm", "qtl"]
11435 },
11436 "qsea": {
11437 "name": "qsea",
11438 "version": "1.36.0",
11439 "sha256": "1a7454b73idzpz406wqcqkspl8vvs60gz4fq6apvqhb9xmgsyzq4",
11440 "depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicRanges", "HMMcopy", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "gtools", "limma", "rtracklayer", "zoo"]
11441 },
11442 "qsmooth": {
11443 "name": "qsmooth",
11444 "version": "1.26.0",
11445 "sha256": "0fgb1jj8wha5q9zdwh09q4xlr9m1pga0c38gq8zx4mg38ik6siwv",
11446 "depends": ["Hmisc", "SummarizedExperiment", "sva"]
11447 },
11448 "qsvaR": {
11449 "name": "qsvaR",
11450 "version": "1.14.0",
11451 "sha256": "12mrzjpydy767skp2664z5iw7zyi28rjlwp8d4s5php0fm5aw9gb",
11452 "depends": ["SummarizedExperiment", "dplyr", "ggplot2", "rlang", "sva"]
11453 },
11454 "quantiseqr": {
11455 "name": "quantiseqr",
11456 "version": "1.18.0",
11457 "sha256": "0s6x3pg7mx89y6bnzzak8qw82yxkw74zpj5lgqimkmvh9f0gf35c",
11458 "depends": ["Biobase", "MASS", "SummarizedExperiment", "ggplot2", "limSolve", "preprocessCore", "rlang", "tidyr"]
11459 },
11460 "quantro": {
11461 "name": "quantro",
11462 "version": "1.44.0",
11463 "sha256": "1g2wzbivpj6vqlh1hy2g468y6r9lbkv6007k6fqvvm2gh4b1xac4",
11464 "depends": ["Biobase", "RColorBrewer", "doParallel", "foreach", "ggplot2", "iterators", "minfi"]
11465 },
11466 "quantsmooth": {
11467 "name": "quantsmooth",
11468 "version": "1.76.0",
11469 "sha256": "1cny9al0cb1z2n2zr4lr8yj3ghrkp35x5glkzkl2lkbrn53ij7l5",
11470 "depends": ["quantreg"]
11471 },
11472 "qusage": {
11473 "name": "qusage",
11474 "version": "2.44.0",
11475 "sha256": "17i0fr1y1n1ygml2x1i1rabhzcci741ld91qrdvn2q34z1jvnqb0",
11476 "depends": ["Biobase", "emmeans", "fftw", "limma", "nlme"]
11477 },
11478 "qvalue": {
11479 "name": "qvalue",
11480 "version": "2.42.0",
11481 "sha256": "1wv57xrls786m26316k5i9innk4hgpdfz9hrj8akvavnqrc5myif",
11482 "depends": ["ggplot2", "reshape2"]
11483 },
11484 "r3Cseq": {
11485 "name": "r3Cseq",
11486 "version": "1.56.0",
11487 "sha256": "0h6viyf8g6bgx14y25i8s1xx8jh5dx4lh5ddfq566zp3y93wp78c",
11488 "depends": ["Biostrings", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "Seqinfo", "VGAM", "data_table", "qvalue", "rtracklayer", "sqldf"]
11489 },
11490 "rBLAST": {
11491 "name": "rBLAST",
11492 "version": "1.6.0",
11493 "sha256": "1kk10kb521rqsb4557h55qj5z6yv2nmkrz160r78lscdgx72z42p",
11494 "depends": ["BiocFileCache", "Biostrings"]
11495 },
11496 "rBiopaxParser": {
11497 "name": "rBiopaxParser",
11498 "version": "2.50.0",
11499 "sha256": "1lc8ib9gyfsbswm8qv719qw7fj7h5pwy1qqg616ykabqfg08iczs",
11500 "depends": ["XML", "data_table"]
11501 },
11502 "rCGH": {
11503 "name": "rCGH",
11504 "version": "1.40.0",
11505 "sha256": "0s4manwnal628ffw3l4mv1qzpsrk31h3k85wx258k656000nm5dv",
11506 "depends": ["AnnotationDbi", "DNAcopy", "GenomicFeatures", "GenomicRanges", "IRanges", "Seqinfo", "TxDb_Hsapiens_UCSC_hg18_knownGene", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "aCGH", "affy", "ggplot2", "lattice", "limma", "mclust", "org_Hs_eg_db", "plyr", "shiny"]
11507 },
11508 "rGREAT": {
11509 "name": "rGREAT",
11510 "version": "2.11.0",
11511 "sha256": "1ciz4cn04vm9sniblf4adkgkcldsjnfzssv441madl364da6m9jq",
11512 "depends": ["AnnotationDbi", "DT", "GO_db", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "GetoptLong", "GlobalOptions", "IRanges", "RColorBrewer", "RCurl", "Rcpp", "S4Vectors", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "circlize", "digest", "doParallel", "foreach", "org_Hs_eg_db", "progress", "rjson", "shiny"]
11513 },
11514 "rGenomeTracks": {
11515 "name": "rGenomeTracks",
11516 "version": "1.16.0",
11517 "sha256": "11sy8lx3pzp6k2fpidhrwd0q9qqq5ys814rlz4vbdwv0d0ymxfbl",
11518 "depends": ["imager", "rGenomeTracksData", "reticulate"]
11519 },
11520 "rRDP": {
11521 "name": "rRDP",
11522 "version": "1.44.0",
11523 "sha256": "1xsnd1pjijxdiyqh677zsmd2k6ycyfvmxlvbr1sd2sags7dpqlh4",
11524 "depends": ["Biostrings", "rJava"]
11525 },
11526 "rSWeeP": {
11527 "name": "rSWeeP",
11528 "version": "1.22.0",
11529 "sha256": "13vhig0c8h6irczcc7ckv1pxj2pf27a6bcbpgskm25wh1lcmaqii",
11530 "depends": ["Biostrings", "doParallel", "foreach", "stringi"]
11531 },
11532 "rScudo": {
11533 "name": "rScudo",
11534 "version": "1.26.0",
11535 "sha256": "12xx48ng75j1n6qlmfvdy0cv5nrlrlpm0g0ggqw1v51a2ka8jalv",
11536 "depends": ["Biobase", "BiocGenerics", "S4Vectors", "SummarizedExperiment", "igraph", "stringr"]
11537 },
11538 "rTRM": {
11539 "name": "rTRM",
11540 "version": "1.48.0",
11541 "sha256": "1s3ql1byahy4b9wsf3511268v4innk5fj5d6cggbw0880529jkgy",
11542 "depends": ["AnnotationDbi", "DBI", "RSQLite", "igraph"]
11543 },
11544 "rTRMui": {
11545 "name": "rTRMui",
11546 "version": "1.48.0",
11547 "sha256": "0qa7j53xr22jp6s11piny5kscjnd328s4b9irg4ribw1jzpcfacx",
11548 "depends": ["MotifDb", "org_Hs_eg_db", "org_Mm_eg_db", "rTRM", "shiny"]
11549 },
11550 "rWikiPathways": {
11551 "name": "rWikiPathways",
11552 "version": "1.30.0",
11553 "sha256": "06rgqn8a0qww4lcxix0967i2vks6smddgys26ymhrdjqikx53cjf",
11554 "depends": ["RCurl", "XML", "data_table", "dplyr", "httr", "lubridate", "purrr", "readr", "rjson", "stringr", "tidyr"]
11555 },
11556 "raer": {
11557 "name": "raer",
11558 "version": "1.8.0",
11559 "sha256": "0pnpi7m3vrqpgv1d7dpzvvh9a46nlx70qjjnf5yif05lfh44nbkq",
11560 "depends": ["BSgenome", "BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "Rhtslib", "Rsamtools", "S4Vectors", "Seqinfo", "SingleCellExperiment", "SummarizedExperiment", "cli", "rtracklayer"]
11561 },
11562 "rain": {
11563 "name": "rain",
11564 "version": "1.44.0",
11565 "sha256": "0iksgh33bavhpgzavf9qw9x15yyhphm9hnfyz0lyghcd5mszhw4i",
11566 "depends": ["gmp", "multtest"]
11567 },
11568 "ramr": {
11569 "name": "ramr",
11570 "version": "1.18.0",
11571 "sha256": "00k92aa08gpvgclghx1nsxf6qw4iks3fgpplgg6dpys1q9mg018g",
11572 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "Rcpp", "S4Vectors", "Seqinfo", "data_table"]
11573 },
11574 "ramwas": {
11575 "name": "ramwas",
11576 "version": "1.34.0",
11577 "sha256": "0m56jj1fn7czvqm8w79m11rs2w7xblpflw5sjnxmn8zxx5nw5m14",
11578 "depends": ["BiocGenerics", "Biostrings", "GenomicAlignments", "KernSmooth", "Rsamtools", "biomaRt", "digest", "filematrix", "glmnet"]
11579 },
11580 "randPack": {
11581 "name": "randPack",
11582 "version": "1.56.0",
11583 "sha256": "1gxmy6mlgbmz290fnw7b6l1fq1qvwim77jmk02wnlg09qafbprmj",
11584 "depends": ["Biobase"]
11585 },
11586 "randRotation": {
11587 "name": "randRotation",
11588 "version": "1.22.0",
11589 "sha256": "06fwdzmpyifv1mdq157h2gh6qdyqx0gxhfra7b52sfz7pj4yh47d",
11590 "depends": ["Rdpack"]
11591 },
11592 "rawDiag": {
11593 "name": "rawDiag",
11594 "version": "1.6.0",
11595 "sha256": "0h73k31j6fffs1nbf2r0190krscm9rxawib9cnbakfagp2qfqywf",
11596 "depends": ["BiocManager", "BiocParallel", "dplyr", "ggplot2", "hexbin", "htmltools", "rawrr", "reshape2", "rlang", "scales", "shiny"]
11597 },
11598 "rawrr": {
11599 "name": "rawrr",
11600 "version": "1.18.0",
11601 "sha256": "1cwf1k837x3j36iqvrvff9wb19y6nyq6015va3rnd7ipfavjjgk1",
11602 "depends": []
11603 },
11604 "rbsurv": {
11605 "name": "rbsurv",
11606 "version": "2.68.0",
11607 "sha256": "0bmb31b7l6x4rnlxzqla8pi2wgp5gn96lls3jr9nrvvv5camiq9p",
11608 "depends": ["Biobase", "survival"]
11609 },
11610 "rcellminer": {
11611 "name": "rcellminer",
11612 "version": "2.32.0",
11613 "sha256": "16ma34rxz5lmk2p42glq53z4vv0c5rk3lq4wl01hg2pc15yx3rbq",
11614 "depends": ["Biobase", "ggplot2", "gplots", "rcellminerData", "shiny", "stringr"]
11615 },
11616 "rebook": {
11617 "name": "rebook",
11618 "version": "1.20.0",
11619 "sha256": "0f5i3s9s0br0zgg8dw8hqzg6ddgwcaflaxc0j8k5krfma3np83c9",
11620 "depends": ["BiocStyle", "CodeDepends", "dir_expiry", "filelock", "knitr", "rmarkdown"]
11621 },
11622 "reconsi": {
11623 "name": "reconsi",
11624 "version": "1.22.0",
11625 "sha256": "164nzs7jcrq149w4gdji4g7d9mvzadbab0qgq62a2ylk275kfa75",
11626 "depends": ["Matrix", "ggplot2", "ks", "matrixStats", "phyloseq", "reshape2"]
11627 },
11628 "recount": {
11629 "name": "recount",
11630 "version": "1.36.0",
11631 "sha256": "16n2wsxl857v25wzzy0v0j1sycm7a1wcg07qdxnfp9nf53fn2v2l",
11632 "depends": ["BiocParallel", "GEOquery", "GenomeInfoDb", "GenomicRanges", "IRanges", "RCurl", "S4Vectors", "SummarizedExperiment", "derfinder", "downloader", "rentrez", "rtracklayer"]
11633 },
11634 "recount3": {
11635 "name": "recount3",
11636 "version": "1.20.0",
11637 "sha256": "1j7dir2bqv813ridsa2ka5dwf2zmd8fxx1s385rlbchw09rgy461",
11638 "depends": ["BiocFileCache", "GenomicRanges", "Matrix", "R_utils", "S4Vectors", "SummarizedExperiment", "data_table", "httr", "rtracklayer", "sessioninfo"]
11639 },
11640 "recountmethylation": {
11641 "name": "recountmethylation",
11642 "version": "1.20.0",
11643 "sha256": "0nlhaxiyfh0mx7ygi99a1gz5mm7qrdx7y0x2gncal19fpbb3rd8v",
11644 "depends": ["BiocFileCache", "DelayedMatrixStats", "HDF5Array", "RCurl", "R_utils", "S4Vectors", "basilisk", "minfi", "reticulate", "rhdf5"]
11645 },
11646 "recoup": {
11647 "name": "recoup",
11648 "version": "1.38.0",
11649 "sha256": "0dl1vagixfqlggdnq8ijj0bi3xrm80rv8d48d317i5l325zqk7c6",
11650 "depends": ["BiocGenerics", "Biostrings", "ComplexHeatmap", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RSQLite", "Rsamtools", "S4Vectors", "Seqinfo", "biomaRt", "circlize", "ggplot2", "httr", "rtracklayer", "stringr", "txdbmaker"]
11651 },
11652 "regionReport": {
11653 "name": "regionReport",
11654 "version": "1.44.0",
11655 "sha256": "0pa23vwjmn56ln35g38y16ayxmywh2q0jp9pb819favc8plypji8",
11656 "depends": ["BiocStyle", "DEFormats", "DESeq2", "GenomeInfoDb", "GenomicRanges", "RefManageR", "S4Vectors", "Seqinfo", "SummarizedExperiment", "derfinder", "knitr", "knitrBootstrap", "rmarkdown"]
11657 },
11658 "regioneR": {
11659 "name": "regioneR",
11660 "version": "1.42.0",
11661 "sha256": "1s96qn8b4g4bk52d2jpyk1m4nw87ay2zhy6xf4scaqs4gd227196",
11662 "depends": ["BSgenome", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "memoise", "rtracklayer"]
11663 },
11664 "regioneReloaded": {
11665 "name": "regioneReloaded",
11666 "version": "1.12.0",
11667 "sha256": "02ycyzhprcijv891cscgssknaqnrfch3wgdc9v1ypg0lyfsqan8y",
11668 "depends": ["RColorBrewer", "Rtsne", "cluster", "ggplot2", "ggrepel", "regioneR", "reshape2", "scales", "umap"]
11669 },
11670 "regsplice": {
11671 "name": "regsplice",
11672 "version": "1.36.0",
11673 "sha256": "0rghn9as68m6mr2d0ra0dk99y73icjnzx80mmkckw01y9z34dm42",
11674 "depends": ["S4Vectors", "SummarizedExperiment", "edgeR", "glmnet", "limma", "pbapply"]
11675 },
11676 "regutools": {
11677 "name": "regutools",
11678 "version": "1.22.0",
11679 "sha256": "1pf8ljrcjj9d8jnayslbl4br90szc453c4lmnhf56vfg62s2qbjw",
11680 "depends": ["AnnotationDbi", "AnnotationHub", "BiocFileCache", "Biostrings", "DBI", "GenomicRanges", "Gviz", "IRanges", "RCy3", "RSQLite", "S4Vectors"]
11681 },
11682 "retrofit": {
11683 "name": "retrofit",
11684 "version": "1.10.0",
11685 "sha256": "00aax7vq90c9jsisar7siqrj0n498jzrhl2ja4xkx19d4jh3bzcy",
11686 "depends": ["Rcpp"]
11687 },
11688 "rexposome": {
11689 "name": "rexposome",
11690 "version": "1.32.0",
11691 "sha256": "00x020bjh7f4pma304i65c6l9wpbqgqkvsfb9yaanaj9sph33q8l",
11692 "depends": ["Biobase", "FactoMineR", "Hmisc", "S4Vectors", "circlize", "corrplot", "ggplot2", "ggrepel", "ggridges", "glmnet", "gplots", "gridExtra", "gtools", "imputeLCMD", "lme4", "lsr", "mice", "pryr", "reshape2", "scales", "scatterplot3d", "stringr"]
11693 },
11694 "rfPred": {
11695 "name": "rfPred",
11696 "version": "1.48.0",
11697 "sha256": "016gq8lbcixpa0xgq054vg20v1qaklls765aq9nfrcnkgk9ygday",
11698 "depends": ["GenomicRanges", "IRanges", "Rsamtools", "Seqinfo", "data_table"]
11699 },
11700 "rfaRm": {
11701 "name": "rfaRm",
11702 "version": "1.22.0",
11703 "sha256": "1xpjy9zxyk0qd50sk5rq1l7zxabjgvd1vx04qms43q5fqk5bq2qg",
11704 "depends": ["Biostrings", "IRanges", "S4Vectors", "data_table", "httr", "jsonlite", "magick", "rsvg", "rvest", "stringi", "xml2"]
11705 },
11706 "rgoslin": {
11707 "name": "rgoslin",
11708 "version": "1.14.0",
11709 "sha256": "05dazq764zksnlb6ymiiz18dz9m8b30kqigwcs16svg1nfzjyav3",
11710 "depends": ["Rcpp", "dplyr"]
11711 },
11712 "rgsepd": {
11713 "name": "rgsepd",
11714 "version": "1.42.0",
11715 "sha256": "0zswyh9c3ak9zsd0zkzx8ca22a56a6zc2p65zihva3lvhm4wv7z0",
11716 "depends": ["AnnotationDbi", "DESeq2", "GO_db", "SummarizedExperiment", "biomaRt", "goseq", "gplots", "org_Hs_eg_db"]
11717 },
11718 "rhdf5": {
11719 "name": "rhdf5",
11720 "version": "2.54.0",
11721 "sha256": "1psfaqha2sflpp0sm0j3wcxscxb9490pbck69izrsfrrg75jbf7n",
11722 "depends": ["Rhdf5lib", "rhdf5filters"]
11723 },
11724 "rhdf5client": {
11725 "name": "rhdf5client",
11726 "version": "1.32.0",
11727 "sha256": "04h3ff62j8ci0ffrpj4rkhdfdqgi201q5dd9qfbvqvqfk24vs8mw",
11728 "depends": ["DelayedArray", "data_table", "httr", "rjson"]
11729 },
11730 "rhdf5filters": {
11731 "name": "rhdf5filters",
11732 "version": "1.22.0",
11733 "sha256": "0idr4l0byd039hdw74zq3ay9yjy6dd579l68r8bfh1q2884y2zsz",
11734 "depends": ["Rhdf5lib"]
11735 },
11736 "rhinotypeR": {
11737 "name": "rhinotypeR",
11738 "version": "1.4.0",
11739 "sha256": "0sp24s5l95bv7dayx6y5f3b8vinv4l4bzk5a556f3i62l5p49yvn",
11740 "depends": ["Biostrings", "MSA2dist", "msa"]
11741 },
11742 "riboSeqR": {
11743 "name": "riboSeqR",
11744 "version": "1.44.0",
11745 "sha256": "02njg9qxghln611ax5m98hq2xidka6ppy3ywx8171cz7cx1mqymv",
11746 "depends": ["GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "abind", "baySeq", "seqLogo"]
11747 },
11748 "ribor": {
11749 "name": "ribor",
11750 "version": "1.22.0",
11751 "sha256": "04zaghm2b2g9m7wjsirm0dfx75cqgbxg6nrkravq8p8zm11w8070",
11752 "depends": ["S4Vectors", "dplyr", "ggplot2", "hash", "rhdf5", "rlang", "tidyr", "yaml"]
11753 },
11754 "ribosomeProfilingQC": {
11755 "name": "ribosomeProfilingQC",
11756 "version": "1.22.0",
11757 "sha256": "0xrxl0b8lmjhqsdvm1glirj5yvs3ml94cl2zrj36yp7rc1yn2aq1",
11758 "depends": ["AnnotationDbi", "BSgenome", "BiocGenerics", "Biostrings", "EDASeq", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RUVSeq", "Rsamtools", "Rsubread", "S4Vectors", "Seqinfo", "XVector", "cluster", "ggExtra", "ggfittext", "ggplot2", "ggrepel", "motifStack", "rtracklayer", "scales", "txdbmaker"]
11759 },
11760 "rifi": {
11761 "name": "rifi",
11762 "version": "1.14.0",
11763 "sha256": "1gq05wxw0dd625m5y5y3cwr2gwmm3n3vkl75ghxcsas0yz5vs0s7",
11764 "depends": ["S4Vectors", "SummarizedExperiment", "car", "cowplot", "doMC", "dplyr", "egg", "foreach", "ggplot2", "nls2", "nnet", "reshape2", "rlang", "rtracklayer", "scales", "stringr", "tibble"]
11765 },
11766 "rifiComparative": {
11767 "name": "rifiComparative",
11768 "version": "1.10.0",
11769 "sha256": "0ywwdh8ashi55wgw34qd0ba460pj2wvv8v0i388fk6fpqanzxcm0",
11770 "depends": ["DTA", "LSD", "S4Vectors", "SummarizedExperiment", "cowplot", "devtools", "doMC", "dplyr", "egg", "foreach", "ggplot2", "ggrepel", "nnet", "reshape2", "rlang", "rtracklayer", "scales", "stringr", "tibble", "writexl"]
11771 },
11772 "rigvf": {
11773 "name": "rigvf",
11774 "version": "1.2.0",
11775 "sha256": "1jimnych28qrpwsd82wpx1c24f8acap6b084ph5ccizpgyl3xbzr",
11776 "depends": ["GenomicRanges", "IRanges", "Seqinfo", "cachem", "dplyr", "httr2", "jsonlite", "memoise", "rjsoncons", "rlang", "tidyr", "whisker"]
11777 },
11778 "rmelting": {
11779 "name": "rmelting",
11780 "version": "1.26.0",
11781 "sha256": "0sbhcfrf4r7d6rvdwnzb0kvj10x93c9srzaavc0y2jkgrqcvg1lw",
11782 "depends": ["Rdpack", "rJava"]
11783 },
11784 "rmspc": {
11785 "name": "rmspc",
11786 "version": "1.16.0",
11787 "sha256": "0jsf4s8grc2qx4jqg8kii5jlvni4m1fqgvmaxdvicgpd15wx1qnp",
11788 "depends": ["BiocManager", "GenomicRanges", "processx", "rtracklayer", "stringr"]
11789 },
11790 "rnaEditr": {
11791 "name": "rnaEditr",
11792 "version": "1.20.0",
11793 "sha256": "1f09d09l0flnjx4d54qwilwl861w5wc8p7b1xa8g99gj5qgjc57y",
11794 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "bumphunter", "corrplot", "logistf", "plyr", "survival"]
11795 },
11796 "rnaseqcomp": {
11797 "name": "rnaseqcomp",
11798 "version": "1.40.0",
11799 "sha256": "1lq8d4lj11fyfhcikr9xj0c0a7v0bzw2a0x3kn95fxc30qmlrz98",
11800 "depends": ["RColorBrewer"]
11801 },
11802 "roar": {
11803 "name": "roar",
11804 "version": "1.46.0",
11805 "sha256": "1cain3g3q7s25b2pqvwadxw67x4bkdq7czgv7diy2s68xky2zlri",
11806 "depends": ["BiocGenerics", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "rtracklayer"]
11807 },
11808 "roastgsa": {
11809 "name": "roastgsa",
11810 "version": "1.8.0",
11811 "sha256": "0c2ydbhvnaczlhh6zk1srfq6pswc67y82v5wcpbqpskxa4q1x0dv",
11812 "depends": ["Biobase", "RColorBrewer", "ggplot2", "gplots", "limma"]
11813 },
11814 "ropls": {
11815 "name": "ropls",
11816 "version": "1.42.0",
11817 "sha256": "0wlldfra8cvagb1125lh3qmrf774d7jf9mfnqnd7mv9s2c6lms0d",
11818 "depends": ["Biobase", "MultiAssayExperiment", "MultiDataSet", "SummarizedExperiment", "ggplot2", "plotly"]
11819 },
11820 "rprimer": {
11821 "name": "rprimer",
11822 "version": "1.14.0",
11823 "sha256": "02hj8qfjbv4p9gw52fyx8klxxg3iwa76agsqj8zzwz9d7pjgqk6b",
11824 "depends": ["Biostrings", "DT", "IRanges", "S4Vectors", "bslib", "ggplot2", "mathjaxr", "patchwork", "reshape2", "shiny", "shinyFeedback", "shinycssloaders"]
11825 },
11826 "rpx": {
11827 "name": "rpx",
11828 "version": "2.18.0",
11829 "sha256": "15f25i5854hmlvw9kvf603pj83di80whlj5c3ij030wdq1g4813b",
11830 "depends": ["BiocFileCache", "RCurl", "curl", "jsonlite", "xml2"]
11831 },
11832 "rqt": {
11833 "name": "rqt",
11834 "version": "1.36.0",
11835 "sha256": "1kwn9x0avaj04hlb3blps4qa94czcv3d9dh57xsklqp1jkcdmcmf",
11836 "depends": ["CompQuadForm", "Matrix", "RUnit", "SummarizedExperiment", "car", "glmnet", "metap", "pls", "ropls"]
11837 },
11838 "rqubic": {
11839 "name": "rqubic",
11840 "version": "1.56.0",
11841 "sha256": "0ffp657yhaj4agd7lgrqcwqqnw6lcybmf1wzahd334vgwi3sz2xp",
11842 "depends": ["Biobase", "BiocGenerics", "biclust"]
11843 },
11844 "rrvgo": {
11845 "name": "rrvgo",
11846 "version": "1.22.0",
11847 "sha256": "0nldapswvf69mdcizynz4cjv2wdf3f24qjl4xsq4cqhzmx5xgjl2",
11848 "depends": ["AnnotationDbi", "GOSemSim", "GO_db", "ggplot2", "ggrepel", "pheatmap", "shiny", "tm", "treemap", "umap", "wordcloud"]
11849 },
11850 "rsbml": {
11851 "name": "rsbml",
11852 "version": "2.68.0",
11853 "sha256": "094h37sdg76365khhablm6wf8mpqbmr151xl83yfv6ld1zilqz9m",
11854 "depends": ["BiocGenerics", "graph"]
11855 },
11856 "rsemmed": {
11857 "name": "rsemmed",
11858 "version": "1.20.0",
11859 "sha256": "1f06l7jlmpcf61dc9szx9h2ajvj6vfh57zkgnpfzl9dx33lyj2yw",
11860 "depends": ["dplyr", "igraph", "magrittr", "stringr"]
11861 },
11862 "rtracklayer": {
11863 "name": "rtracklayer",
11864 "version": "1.70.0",
11865 "sha256": "1i9yx0ngx97lmw7pcdj89da6bb0w6gpc98mrwy9prlmml78d81dn",
11866 "depends": ["BiocGenerics", "BiocIO", "Biostrings", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "XML", "XVector", "curl", "httr", "restfulr"]
11867 },
11868 "runibic": {
11869 "name": "runibic",
11870 "version": "1.32.0",
11871 "sha256": "0zvvkwwkrr7lrcf3rzx98gmb7sz36hn18mkiim0qbk1r576xpgdv",
11872 "depends": ["Rcpp", "SummarizedExperiment", "biclust", "testthat"]
11873 },
11874 "sRACIPE": {
11875 "name": "sRACIPE",
11876 "version": "2.2.0",
11877 "sha256": "1hkb3k4snawgfj68d2cx5320dgl6grdpd5rvxcjf8gaxmyl3vj4k",
11878 "depends": ["BiocGenerics", "MASS", "RColorBrewer", "Rcpp", "S4Vectors", "SummarizedExperiment", "doFuture", "doRNG", "foreach", "future", "ggplot2", "gplots", "gridExtra", "htmlwidgets", "reshape2", "umap", "visNetwork"]
11879 },
11880 "sSNAPPY": {
11881 "name": "sSNAPPY",
11882 "version": "1.14.0",
11883 "sha256": "0jlg8apky668mqgf2xzqxd0555xhfbj8lhdvjp12rc7pfq3ylnks",
11884 "depends": ["SummarizedExperiment", "dplyr", "edgeR", "ggforce", "ggplot2", "ggraph", "graphite", "gtools", "igraph", "magrittr", "org_Hs_eg_db", "pheatmap", "reshape2", "rlang", "stringr", "tibble", "tidyr"]
11885 },
11886 "sSeq": {
11887 "name": "sSeq",
11888 "version": "1.48.0",
11889 "sha256": "1icbgrck6v8mwmmbbrc2qqgk15dmjzbp40nr03jc5v3rlh6m42r1",
11890 "depends": ["RColorBrewer", "caTools"]
11891 },
11892 "safe": {
11893 "name": "safe",
11894 "version": "3.50.0",
11895 "sha256": "1p4lscs7dasag6qfv4s98adgz1sp6q08a3agf8z96qbzg1gvw0c9",
11896 "depends": ["AnnotationDbi", "Biobase", "SparseM"]
11897 },
11898 "sagenhaft": {
11899 "name": "sagenhaft",
11900 "version": "1.80.0",
11901 "sha256": "16m68j9p9ad7x1mwbgpzivhn60y5z4h66kaqpgkzk7wn61lajxh4",
11902 "depends": ["SparseM"]
11903 },
11904 "sangeranalyseR": {
11905 "name": "sangeranalyseR",
11906 "version": "1.19.0",
11907 "sha256": "0hji6y9ya7bg437rcsm2l0dibpzgyrh73kv5h7gdkxwmmx97fbaj",
11908 "depends": ["BiocStyle", "Biostrings", "DECIPHER", "DT", "ape", "data_table", "excelR", "ggdendro", "gridExtra", "knitr", "logger", "openxlsx", "plotly", "pwalign", "reshape2", "rmarkdown", "sangerseqR", "seqinr", "shiny", "shinyWidgets", "shinycssloaders", "shinydashboard", "shinyjs", "stringr", "zeallot"]
11909 },
11910 "sangerseqR": {
11911 "name": "sangerseqR",
11912 "version": "1.46.0",
11913 "sha256": "1hjadhr64qk91byd5cswsjvqggjczjz8cprjiarmf389bfcf0786",
11914 "depends": ["Biostrings", "pwalign", "shiny", "stringr"]
11915 },
11916 "sarks": {
11917 "name": "sarks",
11918 "version": "1.22.0",
11919 "sha256": "0bkkhi5cpbmwc6f1l1vv7mkz4z76mq1sqam3yq3hmjhhxihf8ffx",
11920 "depends": ["Biostrings", "IRanges", "binom", "cluster", "rJava"]
11921 },
11922 "saseR": {
11923 "name": "saseR",
11924 "version": "1.6.0",
11925 "sha256": "0gms4md6qhw2fbbl2sn31fa50abpp19wmm6qh2z048v08zyf3wfb",
11926 "depends": ["ASpli", "BiocGenerics", "BiocParallel", "DESeq2", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "MASS", "MatrixGenerics", "PRROC", "S4Vectors", "SummarizedExperiment", "data_table", "dplyr", "edgeR", "igraph", "limma"]
11927 },
11928 "satuRn": {
11929 "name": "satuRn",
11930 "version": "1.18.0",
11931 "sha256": "0xfylzpbnqjm8d38l7w7cvqlncpca2cj607rg4vfpsslykmqii05",
11932 "depends": ["BiocParallel", "Matrix", "SummarizedExperiment", "boot", "ggplot2", "limma", "locfdr", "pbapply"]
11933 },
11934 "scAnnotatR": {
11935 "name": "scAnnotatR",
11936 "version": "1.16.0",
11937 "sha256": "1r9c033066rdrcnh0d540ln8axsmzpqjb35gxasmrfbd5zgl2m6h",
11938 "depends": ["AnnotationHub", "ROCR", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "ape", "caret", "data_tree", "dplyr", "e1071", "ggplot2", "kernlab", "pROC"]
11939 },
11940 "scBFA": {
11941 "name": "scBFA",
11942 "version": "1.24.0",
11943 "sha256": "0fdnh210afa30z9vjbdz58p47f14n4h6lm6jrvj8hi87wdxjk2lh",
11944 "depends": ["DESeq2", "MASS", "Matrix", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "copula", "ggplot2", "zinbwave"]
11945 },
11946 "scBubbletree": {
11947 "name": "scBubbletree",
11948 "version": "1.12.0",
11949 "sha256": "1pcpja5x0ax1788csykzr08p0h1c1z6vrv4njvy4f2fdj971czwr",
11950 "depends": ["BiocParallel", "Seurat", "ape", "dplyr", "ggplot2", "ggtree", "patchwork", "proxy", "reshape2", "scales"]
11951 },
11952 "scCB2": {
11953 "name": "scCB2",
11954 "version": "1.20.0",
11955 "sha256": "0laxia6dkd00iq0ri10v771y6rspa920q78b2ajxq79j4qadn5l9",
11956 "depends": ["DropletUtils", "Matrix", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "doParallel", "edgeR", "foreach", "iterators", "rhdf5"]
11957 },
11958 "scClassify": {
11959 "name": "scClassify",
11960 "version": "1.22.0",
11961 "sha256": "1napk4jijjqan6x0y0xxf7lkj1d8h7djala7r5npdn5cj7wjykln",
11962 "depends": ["BiocParallel", "Cepo", "Matrix", "S4Vectors", "cluster", "diptest", "ggplot2", "ggraph", "hopach", "igraph", "limma", "mgcv", "minpack_lm", "mixtools", "proxy", "proxyC", "statmod"]
11963 },
11964 "scDD": {
11965 "name": "scDD",
11966 "version": "1.34.0",
11967 "sha256": "03zxkw6jx7gd37vj1li4z54sfw94khv5h962inzx2iazsa774wbh",
11968 "depends": ["BiocParallel", "EBSeq", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "arm", "fields", "ggplot2", "mclust", "outliers", "scran"]
11969 },
11970 "scDDboost": {
11971 "name": "scDDboost",
11972 "version": "1.12.0",
11973 "sha256": "0fzmk0wj7qs7jcdsqd12qmhk9gd23pagimgf1xbn0clasy800zp5",
11974 "depends": ["BH", "BiocParallel", "EBSeq", "Oscope", "Rcpp", "RcppEigen", "SingleCellExperiment", "SummarizedExperiment", "cluster", "ggplot2", "mclust"]
11975 },
11976 "scDataviz": {
11977 "name": "scDataviz",
11978 "version": "1.20.0",
11979 "sha256": "1q7hac56lakzs10dr9kzq2m817m4891acgjccfixgcfsvdc72svl",
11980 "depends": ["MASS", "RColorBrewer", "S4Vectors", "Seurat", "SingleCellExperiment", "corrplot", "flowCore", "ggplot2", "ggrepel", "matrixStats", "reshape2", "scales", "umap"]
11981 },
11982 "scDblFinder": {
11983 "name": "scDblFinder",
11984 "version": "1.24.0",
11985 "sha256": "0l9zhcx4a3wdzldlsg4blq3jh259pwd0h9qbhwwcz94jlp9v9wjq",
11986 "depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "BiocSingular", "DelayedArray", "GenomeInfoDb", "GenomicRanges", "IRanges", "MASS", "Matrix", "Rsamtools", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "bluster", "igraph", "rtracklayer", "scater", "scran", "scuttle", "xgboost"]
11987 },
11988 "scDesign3": {
11989 "name": "scDesign3",
11990 "version": "1.8.0",
11991 "sha256": "0pjd68c25badgw9gz44zfcg6w5m9kbvqffjw2ppvi60y7vz0dal9",
11992 "depends": ["BiocParallel", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "coop", "dplyr", "gamlss", "gamlss_dist", "ggplot2", "irlba", "matrixStats", "mclust", "mgcv", "mvtnorm", "pbmcapply", "sparseMVN", "tibble", "umap", "viridis"]
11993 },
11994 "scDiagnostics": {
11995 "name": "scDiagnostics",
11996 "version": "1.4.0",
11997 "sha256": "1fgpp6gkgwr0lkkbi88rhxb1jdzcjx5jz94k4jasnxm62wcb7r50",
11998 "depends": ["FNN", "GGally", "MASS", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "bluster", "cramer", "ggplot2", "ggridges", "igraph", "isotree", "ranger", "rlang", "scales", "stringr", "transport"]
11999 },
12000 "scDotPlot": {
12001 "name": "scDotPlot",
12002 "version": "1.4.0",
12003 "sha256": "07c5sxf9nfk2976zrh1gyz2qhdb6lp65iilyvlw7jzsikyx1hh41",
12004 "depends": ["BiocGenerics", "Seurat", "SingleCellExperiment", "aplot", "cli", "dplyr", "ggplot2", "ggsci", "ggtree", "magrittr", "purrr", "rlang", "scales", "scater", "stringr", "tibble", "tidyr"]
12005 },
12006 "scFeatureFilter": {
12007 "name": "scFeatureFilter",
12008 "version": "1.30.0",
12009 "sha256": "0p3aacnj32nnwn8s7ywngs63gf0cciw517a42b610fzn0nf93b4w",
12010 "depends": ["dplyr", "ggplot2", "magrittr", "rlang", "tibble"]
12011 },
12012 "scGPS": {
12013 "name": "scGPS",
12014 "version": "1.24.0",
12015 "sha256": "0ck8sjxfmb5ls7192yp82bczwwhgf5kqaqivniikhdbb6gy0ilvy",
12016 "depends": ["DESeq2", "Rcpp", "RcppArmadillo", "RcppParallel", "SingleCellExperiment", "SummarizedExperiment", "caret", "dplyr", "dynamicTreeCut", "fastcluster", "ggplot2", "glmnet", "locfit"]
12017 },
12018 "scGraphVerse": {
12019 "name": "scGraphVerse",
12020 "version": "1.0.0",
12021 "sha256": "02nzhprhvvqk903cj7ynskz5dwbjsknd05wn2z8pwnx4na4h33hs",
12022 "depends": ["BiocBaseUtils", "BiocParallel", "GENIE3", "MASS", "Matrix", "MultiAssayExperiment", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "distributions3", "doParallel", "doRNG", "dplyr", "glmnet", "graph", "httr", "igraph", "jsonlite", "mpath", "reticulate", "tidyr"]
12023 },
12024 "scHOT": {
12025 "name": "scHOT",
12026 "version": "1.22.0",
12027 "sha256": "1191rflc7ilcqnmfsgkh532x7mh5hbkg513aiv1zm24gw630jxjb",
12028 "depends": ["BiocParallel", "IRanges", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "ggforce", "ggplot2", "igraph", "reshape"]
12029 },
12030 "scHiCcompare": {
12031 "name": "scHiCcompare",
12032 "version": "1.2.0",
12033 "sha256": "17lan37g10hm8r9xn48rw21hyhby42mjfvpj5jj64hh4cjr8n3ky",
12034 "depends": ["BiocParallel", "HiCcompare", "data_table", "dplyr", "ggplot2", "gtools", "lattice", "mclust", "mice", "miceadds", "ranger", "rlang", "rstatix", "tidyr"]
12035 },
12036 "scLANE": {
12037 "name": "scLANE",
12038 "version": "1.0.0",
12039 "sha256": "0g41wzi4jh12l3m85jw3acb92f49gybykjfj7y6s98vpv4ap0vii",
12040 "depends": ["MASS", "Matrix", "Rcpp", "RcppEigen", "bigstatsr", "broom_mixed", "doSNOW", "dplyr", "foreach", "furrr", "future", "gamlss", "geeM", "ggplot2", "glm2", "glmmTMB", "magrittr", "mpath", "purrr", "scales", "tidyr", "tidyselect", "withr"]
12041 },
12042 "scMET": {
12043 "name": "scMET",
12044 "version": "1.12.0",
12045 "sha256": "1r7p3arjqvbxz46hlkh0a5ah3bckg4imxxhqfr8bp8f1i5wv7h6v",
12046 "depends": ["BH", "BiocStyle", "MASS", "Matrix", "Rcpp", "RcppEigen", "RcppParallel", "S4Vectors", "SingleCellExperiment", "StanHeaders", "SummarizedExperiment", "VGAM", "assertthat", "coda", "cowplot", "data_table", "dplyr", "ggplot2", "logitnorm", "matrixStats", "rstan", "rstantools", "viridis"]
12047 },
12048 "scMerge": {
12049 "name": "scMerge",
12050 "version": "1.26.0",
12051 "sha256": "1z9g33sajhbirbafkvzl1cc0cwb6dsy79bmy3dw30z5awyfyjj4m",
12052 "depends": ["BiocNeighbors", "BiocParallel", "BiocSingular", "DelayedArray", "DelayedMatrixStats", "M3Drop", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "batchelor", "cluster", "cvTools", "distr", "igraph", "proxyC", "ruv", "scater", "scran"]
12053 },
12054 "scMitoMut": {
12055 "name": "scMitoMut",
12056 "version": "1.6.0",
12057 "sha256": "02443jab6l3760090x3qvi9zhk2d7nmkv1faibp9fgpdqms01aha",
12058 "depends": ["RColorBrewer", "Rcpp", "RcppArmadillo", "data_table", "ggplot2", "magrittr", "pheatmap", "plyr", "readr", "rhdf5", "stringr"]
12059 },
12060 "scMultiSim": {
12061 "name": "scMultiSim",
12062 "version": "1.6.0",
12063 "sha256": "010gdscjvh49cas4b6n5lnalsasy7864ccvfjvbgm4ywq3y0q5fv",
12064 "depends": ["BiocParallel", "KernelKnn", "MASS", "Rtsne", "SummarizedExperiment", "ape", "assertthat", "crayon", "dplyr", "foreach", "ggplot2", "gplots", "igraph", "markdown", "matrixStats", "phytools", "rlang", "zeallot"]
12065 },
12066 "scPCA": {
12067 "name": "scPCA",
12068 "version": "1.24.0",
12069 "sha256": "0m0qc7i2pqag4r5i9ly35fp7vqnhlfb5jimnk0yfkx5bj0bd9ya8",
12070 "depends": ["BiocParallel", "DelayedArray", "Matrix", "MatrixGenerics", "RSpectra", "Rdpack", "ScaledMatrix", "assertthat", "cluster", "coop", "dplyr", "elasticnet", "kernlab", "matrixStats", "origami", "purrr", "sparsepca", "stringr", "tibble"]
12071 },
12072 "scPipe": {
12073 "name": "scPipe",
12074 "version": "2.10.0",
12075 "sha256": "1y6fmydg0l67v8g830h52pwx9nd2bv5gd15skah1znrjam99vali",
12076 "depends": ["AnnotationDbi", "BiocGenerics", "Biostrings", "DropletUtils", "GGally", "GenomicAlignments", "GenomicRanges", "IRanges", "MASS", "Matrix", "MultiAssayExperiment", "Rcpp", "Rhtslib", "Rsamtools", "Rsubread", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "basilisk", "biomaRt", "data_table", "dplyr", "flexmix", "ggplot2", "glue", "hash", "magrittr", "mclust", "org_Hs_eg_db", "org_Mm_eg_db", "purrr", "reshape", "reticulate", "rlang", "robustbase", "rtracklayer", "scales", "stringr", "testthat", "tibble", "tidyr", "vctrs"]
12077 },
12078 "scRNAseqApp": {
12079 "name": "scRNAseqApp",
12080 "version": "1.10.0",
12081 "sha256": "1z300l667y9pn195rmc92a59v56zxmvjrsxbc073693wbwvwp1yi",
12082 "depends": ["ComplexHeatmap", "DBI", "DT", "GenomeInfoDb", "GenomicRanges", "IRanges", "Matrix", "RColorBrewer", "RSQLite", "RefManageR", "Rsamtools", "S4Vectors", "Seurat", "SeuratObject", "SingleCellExperiment", "bibtex", "bslib", "circlize", "colourpicker", "data_table", "fs", "ggdendro", "ggforce", "ggplot2", "ggrepel", "ggridges", "gridExtra", "htmltools", "jsonlite", "magrittr", "patchwork", "plotly", "reshape2", "rhdf5", "rtracklayer", "scales", "scrypt", "shiny", "shinyhelper", "shinymanager", "slingshot", "sortable", "xfun", "xml2"]
12083 },
12084 "scReClassify": {
12085 "name": "scReClassify",
12086 "version": "1.16.0",
12087 "sha256": "1bwbm2la5wcafisj6xprqg5y4yj0gxxhgmqkz9q6cd8ssfnr0bw6",
12088 "depends": ["SingleCellExperiment", "SummarizedExperiment", "e1071", "randomForest"]
12089 },
12090 "scRecover": {
12091 "name": "scRecover",
12092 "version": "1.26.0",
12093 "sha256": "1nlzrrn4brf2615qj0ynxfpzddx7238nxhbsxp5c333slvncqy8x",
12094 "depends": ["BiocParallel", "MASS", "Matrix", "SAVER", "bbmle", "doParallel", "foreach", "gamlss", "kernlab", "penalized", "preseqR", "pscl", "rsvd"]
12095 },
12096 "scRepertoire": {
12097 "name": "scRepertoire",
12098 "version": "2.5.8",
12099 "sha256": "0ijycpmaivcqqmdc90h5jx8rcwg9112pl2mdpms1hgvww70x3s6w",
12100 "depends": ["Matrix", "Rcpp", "S4Vectors", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "evmix", "ggalluvial", "ggdendro", "ggplot2", "ggraph", "iNEXT", "igraph", "immApex", "lifecycle", "purrr", "quantreg", "rjson", "rlang", "tidygraph"]
12101 },
12102 "scShapes": {
12103 "name": "scShapes",
12104 "version": "1.16.0",
12105 "sha256": "1vs0ldcawicby8mbzpxz2szfjljf2pgb6rj231d3bbmn6975822g",
12106 "depends": ["BiocParallel", "MASS", "Matrix", "VGAM", "dgof", "emdbook", "magrittr", "pscl"]
12107 },
12108 "scTGIF": {
12109 "name": "scTGIF",
12110 "version": "1.24.0",
12111 "sha256": "07fmcgvam3swbg254j9hhyj7x9sjvs9b0mrx60hxfd4rg1d0dsgf",
12112 "depends": ["Biobase", "BiocStyle", "GSEABase", "RColorBrewer", "Rcpp", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "igraph", "knitr", "msigdbr", "nnTensor", "plotly", "rmarkdown", "scales", "schex", "tagcloud", "tibble"]
12113 },
12114 "scTHI": {
12115 "name": "scTHI",
12116 "version": "1.22.0",
12117 "sha256": "0jk38bqr1x17xkpwgxqpsdh9m4vvsccx1a00abqqs07rzfhacfs1",
12118 "depends": ["BiocParallel", "Rtsne"]
12119 },
12120 "scTensor": {
12121 "name": "scTensor",
12122 "version": "2.20.0",
12123 "sha256": "0alipcy6hchw07rwxqib3w6vy5lycfxqrsbsazqmli1n2qblkjj3",
12124 "depends": ["AnnotationDbi", "AnnotationHub", "BiocManager", "BiocStyle", "Category", "DOSE", "GOstats", "MeSHDbi", "RSQLite", "ReactomePA", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "abind", "ccTensor", "checkmate", "crayon", "ggplot2", "heatmaply", "igraph", "knitr", "meshr", "nnTensor", "outliers", "plotly", "plotrix", "rTensor", "reactome_db", "rmarkdown", "schex", "tagcloud", "visNetwork"]
12125 },
12126 "scTreeViz": {
12127 "name": "scTreeViz",
12128 "version": "1.16.0",
12129 "sha256": "0jm9ymw3vinzrsgn762yzrrvxxvbk4bgswa4hqfs6cacdhnsah0x",
12130 "depends": ["Matrix", "Rtsne", "S4Vectors", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "clustree", "data_table", "digest", "epivizr", "epivizrData", "epivizrServer", "ggplot2", "ggraph", "httr", "igraph", "scater", "scran", "sys"]
12131 },
12132 "scafari": {
12133 "name": "scafari",
12134 "version": "1.0.0",
12135 "sha256": "0pwda9szl9ga8ic17wnfkadgisyzjy6gihvsrcn1ap6vdjzgs745",
12136 "depends": ["ComplexHeatmap", "DT", "GenomicRanges", "RANN", "R_utils", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "biomaRt", "circlize", "dbscan", "dplyr", "factoextra", "ggbio", "ggplot2", "httr", "igraph", "jsonlite", "magrittr", "markdown", "org_Hs_eg_db", "plotly", "reshape2", "rhdf5", "scales", "shiny", "shinyBS", "shinycssloaders", "shinycustomloader", "shinyjs", "stringr", "tibble", "tidyr", "txdbmaker", "waiter"]
12137 },
12138 "scanMiR": {
12139 "name": "scanMiR",
12140 "version": "1.16.0",
12141 "sha256": "0yfzfsilqfm3waj4hjx455k7icln526jgmhp5byyq75zn3a8mgr8",
12142 "depends": ["BiocParallel", "Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "cowplot", "data_table", "ggplot2", "pwalign", "seqLogo", "stringi"]
12143 },
12144 "scanMiRApp": {
12145 "name": "scanMiRApp",
12146 "version": "1.16.0",
12147 "sha256": "0mfmlvdlzn9ldxhfrx1szhkssqqwqzy7l943j2y2rfsavg3w14lj",
12148 "depends": ["AnnotationDbi", "AnnotationFilter", "AnnotationHub", "BiocParallel", "Biostrings", "DT", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "data_table", "digest", "ensembldb", "fst", "ggplot2", "htmlwidgets", "plotly", "rintrojs", "rtracklayer", "scanMiR", "scanMiRData", "shiny", "shinycssloaders", "shinydashboard", "shinyjqui", "txdbmaker", "waiter"]
12149 },
12150 "scater": {
12151 "name": "scater",
12152 "version": "1.38.0",
12153 "sha256": "1qwygk8fg8nharrkmjs65fcl3lsdi232f2383s5j8vm1qil5gghd",
12154 "depends": ["BiocGenerics", "BiocNeighbors", "BiocParallel", "BiocSingular", "DelayedArray", "Matrix", "MatrixGenerics", "RColorBrewer", "RcppML", "Rtsne", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "beachmat", "ggbeeswarm", "ggplot2", "ggrastr", "ggrepel", "pheatmap", "rlang", "scuttle", "uwot", "viridis"]
12155 },
12156 "scatterHatch": {
12157 "name": "scatterHatch",
12158 "version": "1.16.0",
12159 "sha256": "027gmj3ymx9f15rcymj30xggmf0rggs2jygw39mxf7iqak9r97kc",
12160 "depends": ["ggplot2", "plyr", "spatstat_geom"]
12161 },
12162 "sccomp": {
12163 "name": "sccomp",
12164 "version": "2.2.0",
12165 "sha256": "06xnp6f962q6qc4078dcaqsh9cdvxgwlis4sinh90y96fmsph6qi",
12166 "depends": ["SingleCellExperiment", "boot", "cli", "crayon", "dplyr", "fansi", "forcats", "ggplot2", "ggrepel", "glue", "instantiate", "lifecycle", "magrittr", "patchwork", "purrr", "readr", "rlang", "scales", "stringr", "tibble", "tidyr", "tidyselect"]
12167 },
12168 "scde": {
12169 "name": "scde",
12170 "version": "2.38.0",
12171 "sha256": "1cmqzlqdb561jyd7yvga55wpx78bx8wlv3ilq5kwmawjd8x4yrf6",
12172 "depends": ["BiocParallel", "Cairo", "MASS", "RColorBrewer", "RMTstat", "Rcpp", "RcppArmadillo", "Rook", "edgeR", "extRemes", "flexmix", "mgcv", "nnet", "pcaMethods", "quantreg", "rjson"]
12173 },
12174 "scds": {
12175 "name": "scds",
12176 "version": "1.26.0",
12177 "sha256": "1j0z0w8cw80mr9nll9lj6x8573cyi1hk0wlz5f1bm66c2pf4q547",
12178 "depends": ["Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "pROC", "xgboost"]
12179 },
12180 "schex": {
12181 "name": "schex",
12182 "version": "1.24.0",
12183 "sha256": "0h3dh3vcdfvyx9rryjzagmgfxqspfz6khjwwficvc80izkbm5kj0",
12184 "depends": ["SingleCellExperiment", "cluster", "concaveman", "dplyr", "entropy", "ggforce", "ggplot2", "hexbin", "rlang"]
12185 },
12186 "scider": {
12187 "name": "scider",
12188 "version": "1.8.0",
12189 "sha256": "1007qg5rm11mm6ljwn5jyfgiil1byfr69xy5hvvl10wfrvydryjy",
12190 "depends": ["BiocNeighbors", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SpatialPack", "SummarizedExperiment", "dbscan", "ggplot2", "hexDensity", "hexbin", "igraph", "irlba", "isoband", "janitor", "knitr", "lwgeom", "pheatmap", "plotly", "sf", "shiny", "spatstat_explore", "spatstat_geom", "uwot"]
12191 },
12192 "scifer": {
12193 "name": "scifer",
12194 "version": "1.12.0",
12195 "sha256": "04sglgwsxnw8h4v03hv9vh7hrr97f83pmvyqy1axz5g37lhgrf49",
12196 "depends": ["Biostrings", "DECIPHER", "basilisk", "basilisk_utils", "data_table", "dplyr", "flowCore", "ggplot2", "gridExtra", "here", "kableExtra", "knitr", "plyr", "pwalign", "reticulate", "rlang", "rmarkdown", "sangerseqR", "scales", "stringr", "tibble"]
12197 },
12198 "scmap": {
12199 "name": "scmap",
12200 "version": "1.32.0",
12201 "sha256": "1hjpf2ihjd48q0p1alrnmxkimxpd8l2k0ax2493141gcz39snv58",
12202 "depends": ["Biobase", "BiocGenerics", "Rcpp", "RcppArmadillo", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "e1071", "ggplot2", "googleVis", "matrixStats", "proxy", "randomForest", "reshape2"]
12203 },
12204 "scmeth": {
12205 "name": "scmeth",
12206 "version": "1.30.0",
12207 "sha256": "0j977hw1rfm483rk793ihjw7ijxxvninx2h2i6g9im7v0n499f68",
12208 "depends": ["AnnotationHub", "BSgenome", "BiocGenerics", "Biostrings", "DT", "DelayedArray", "GenomeInfoDb", "GenomicRanges", "HDF5Array", "Seqinfo", "SummarizedExperiment", "annotatr", "bsseq", "reshape2"]
12209 },
12210 "scone": {
12211 "name": "scone",
12212 "version": "1.34.0",
12213 "sha256": "1mna7qf6mhjqq50gpr47kz3936qj3z7hv6jh3sx2yn6dsmi12agv",
12214 "depends": ["BiocParallel", "DelayedMatrixStats", "MatrixGenerics", "RColorBrewer", "RUVSeq", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "aroma_light", "boot", "class", "cluster", "compositions", "diptest", "edgeR", "fpc", "gplots", "hexbin", "limma", "matrixStats", "mixtools", "rARPACK", "rhdf5", "sparseMatrixStats"]
12215 },
12216 "scoreInvHap": {
12217 "name": "scoreInvHap",
12218 "version": "1.32.0",
12219 "sha256": "0md5crlf4b62nmphxipai7jnpaz7mn2b8r08xjk31zx7skba266j",
12220 "depends": ["BiocParallel", "Biostrings", "GenomicRanges", "SummarizedExperiment", "VariantAnnotation", "snpStats"]
12221 },
12222 "scoup": {
12223 "name": "scoup",
12224 "version": "1.4.0",
12225 "sha256": "03gaggdqxkxxx11lfrv21ransdlkmhwzbrn900sjqwn551maacj5",
12226 "depends": ["Biostrings", "Matrix"]
12227 },
12228 "scp": {
12229 "name": "scp",
12230 "version": "1.20.0",
12231 "sha256": "0ah2zy4mi5h1ihrv02s6z5q814rbyx37zcgj11iy5ss5j9zqhli4",
12232 "depends": ["IHW", "MsCoreUtils", "MultiAssayExperiment", "QFeatures", "RColorBrewer", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "ggrepel", "matrixStats", "metapod", "nipals"]
12233 },
12234 "scran": {
12235 "name": "scran",
12236 "version": "1.38.0",
12237 "sha256": "1ac4fxj5adqrsgpcpqhk9sxlagaaq2w577xq751kqvxs54hj63n4",
12238 "depends": ["BH", "BiocGenerics", "BiocParallel", "BiocSingular", "DelayedArray", "Matrix", "MatrixGenerics", "Rcpp", "S4Arrays", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "beachmat", "bluster", "dqrng", "edgeR", "igraph", "limma", "metapod", "scuttle", "statmod"]
12239 },
12240 "scrapper": {
12241 "name": "scrapper",
12242 "version": "1.4.0",
12243 "sha256": "16lvbwby98zinykh6ybxwiswyv7072pmk9lv8sbi7mfqlh0agzfz",
12244 "depends": ["BiocNeighbors", "DelayedArray", "Rcpp", "Rigraphlib", "assorthead", "beachmat"]
12245 },
12246 "screenCounter": {
12247 "name": "screenCounter",
12248 "version": "1.10.0",
12249 "sha256": "11d17blwgrifq5acj93sd5zy1ri0ygrzja8cw82dwnihrb30zmrq",
12250 "depends": ["BiocParallel", "Rcpp", "S4Vectors", "SummarizedExperiment"]
12251 },
12252 "scruff": {
12253 "name": "scruff",
12254 "version": "1.28.0",
12255 "sha256": "0qm43s8jk601xl6rqqqsgycilnpk9a45rlwm7qg9fc0729jrwp81",
12256 "depends": ["AnnotationDbi", "BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Rsamtools", "Rsubread", "S4Vectors", "ShortRead", "SingleCellExperiment", "SummarizedExperiment", "data_table", "ggbio", "ggplot2", "ggthemes", "parallelly", "patchwork", "plyr", "rtracklayer", "scales", "stringdist", "txdbmaker"]
12257 },
12258 "scry": {
12259 "name": "scry",
12260 "version": "1.22.0",
12261 "sha256": "1sffz2g1wqh8g2k21j10l87lbdff134sfcvg7b9xnaqicakly51l",
12262 "depends": ["BiocSingular", "DelayedArray", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "glmpca"]
12263 },
12264 "scuttle": {
12265 "name": "scuttle",
12266 "version": "1.20.0",
12267 "sha256": "1m235brp8blyzx1z0j3acqgmssjhp2jnpb72i3a3c1f7nd225qaj",
12268 "depends": ["BiocGenerics", "BiocParallel", "DelayedArray", "GenomicRanges", "Matrix", "MatrixGenerics", "Rcpp", "S4Arrays", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "beachmat"]
12269 },
12270 "scviR": {
12271 "name": "scviR",
12272 "version": "1.10.0",
12273 "sha256": "047y1drrpn6g5s8li34kcspgmy9pv7l2bclfxhxrrm0f5d6w6avh",
12274 "depends": ["BiocFileCache", "MatrixGenerics", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "basilisk", "limma", "pheatmap", "reticulate", "scater", "shiny"]
12275 },
12276 "seahtrue": {
12277 "name": "seahtrue",
12278 "version": "1.4.0",
12279 "sha256": "16j5l6gw8m7cwh5hwfmg4cr7qrw4wchpp93pckjgx2wznchkylz6",
12280 "depends": ["RColorBrewer", "cli", "colorspace", "dplyr", "forcats", "ggplot2", "ggridges", "glue", "janitor", "logger", "lubridate", "purrr", "readr", "readxl", "rlang", "scales", "stringr", "tibble", "tidyr", "tidyxl", "validate"]
12281 },
12282 "sechm": {
12283 "name": "sechm",
12284 "version": "1.18.0",
12285 "sha256": "0zjmz0s7z5wpfzf2w3rrfh8gq03m3l42kzha7h6x8wv7qx2clzf0",
12286 "depends": ["ComplexHeatmap", "S4Vectors", "SummarizedExperiment", "circlize", "matrixStats", "randomcoloR", "seriation"]
12287 },
12288 "segmentSeq": {
12289 "name": "segmentSeq",
12290 "version": "2.44.0",
12291 "sha256": "06wwpk0l3zy2xajagxdhccnynpb8wqsj3ksdf4vm010a41rlqiwm",
12292 "depends": ["GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "ShortRead", "abind", "baySeq"]
12293 },
12294 "segmenter": {
12295 "name": "segmenter",
12296 "version": "1.16.0",
12297 "sha256": "12ss0b59xcv6mhrfiway6k7cvgsgxlh71jjv8mvlv66gd5jxlxvj",
12298 "depends": ["ChIPseeker", "ComplexHeatmap", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "bamsignals", "chromhmmData"]
12299 },
12300 "selectKSigs": {
12301 "name": "selectKSigs",
12302 "version": "1.22.0",
12303 "sha256": "12w82vm9ha1rbirwc361w2x719bskn53mrfaarm6ndcr37xz6lzl",
12304 "depends": ["HiLDA", "Rcpp", "gtools", "magrittr"]
12305 },
12306 "semisup": {
12307 "name": "semisup",
12308 "version": "1.34.0",
12309 "sha256": "1ppy36h6qrrya4rwa7mz2bmrn1izj1397mrpx151y4vmniijf9v7",
12310 "depends": ["VGAM"]
12311 },
12312 "seq_hotSPOT": {
12313 "name": "seq.hotSPOT",
12314 "version": "1.10.0",
12315 "sha256": "18a71gzl76wdmzckpvzg131nyxzkwzsdhny5n24ngjwgp6gg9q4k",
12316 "depends": ["R_utils", "hash"]
12317 },
12318 "seqCAT": {
12319 "name": "seqCAT",
12320 "version": "1.32.0",
12321 "sha256": "1di2xcrsqjwcxzw6w93a777vfahnwcqxrfgnav3vagc11bdc99ri",
12322 "depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "VariantAnnotation", "dplyr", "ggplot2", "rlang", "rtracklayer", "scales", "tidyr"]
12323 },
12324 "seqLogo": {
12325 "name": "seqLogo",
12326 "version": "1.76.0",
12327 "sha256": "189zhnm7rx0lya1xsn89as2c6awkidv641rri7w39ds0kygcy8x4",
12328 "depends": []
12329 },
12330 "seqPattern": {
12331 "name": "seqPattern",
12332 "version": "1.42.0",
12333 "sha256": "107l52mv68bpmjrhfgjm94wqxc3bqz1vhr2hd8rn6jzlwbn6bijj",
12334 "depends": ["Biostrings", "GenomicRanges", "IRanges", "KernSmooth", "plotrix"]
12335 },
12336 "seqcombo": {
12337 "name": "seqcombo",
12338 "version": "1.32.0",
12339 "sha256": "12xf0cyrmbp4ybvc48yw96ggh5f8354ag065qm76g324zfd3c9iy",
12340 "depends": ["ggplot2", "igraph", "yulab_utils"]
12341 },
12342 "seqsetvis": {
12343 "name": "seqsetvis",
12344 "version": "1.30.0",
12345 "sha256": "080njbczm82xy65z3lz1v5fxcvb5l4qamfjnxw73ib3by3wdskzr",
12346 "depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "S4Vectors", "Seqinfo", "UpSetR", "cowplot", "data_table", "eulerr", "ggplot2", "ggplotify", "limma", "pbapply", "pbmcapply", "png", "rtracklayer", "scales"]
12347 },
12348 "sesame": {
12349 "name": "sesame",
12350 "version": "1.28.0",
12351 "sha256": "0268p9yvzsnrjjbmbyqzhz9vnc6227200639kyn7yi2daa6fkzav",
12352 "depends": ["BiocFileCache", "BiocParallel", "GenomicRanges", "IRanges", "MASS", "S4Vectors", "Seqinfo", "SummarizedExperiment", "dplyr", "ggplot2", "preprocessCore", "readr", "reshape2", "sesameData", "stringr", "tibble", "wheatmap"]
12353 },
12354 "sevenC": {
12355 "name": "sevenC",
12356 "version": "1.30.0",
12357 "sha256": "1sxydda3czgj2schk2wlpyxcms4p999ywxj1k3rvqb0jssxl8cfi",
12358 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "InteractionSet", "S4Vectors", "Seqinfo", "boot", "data_table", "purrr", "readr", "rtracklayer"]
12359 },
12360 "sevenbridges": {
12361 "name": "sevenbridges",
12362 "version": "1.40.0",
12363 "sha256": "1kayxyhx3j9ni7cy8lynrnk8s05nckc8cj5x3nzhzqg6i58dddcx",
12364 "depends": ["S4Vectors", "curl", "data_table", "docopt", "httr", "jsonlite", "objectProperties", "stringr", "uuid", "yaml"]
12365 },
12366 "shinyDSP": {
12367 "name": "shinyDSP",
12368 "version": "1.2.0",
12369 "sha256": "01d2y1knx34zc7afrd18s4macxb3x4vksfrwnd4md9dmfrdayxn3",
12370 "depends": ["AnnotationHub", "BiocGenerics", "ComplexHeatmap", "DT", "ExperimentHub", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "bsicons", "bslib", "circlize", "cowplot", "dplyr", "edgeR", "ggplot2", "ggpubr", "ggrepel", "htmltools", "limma", "magrittr", "pals", "readr", "scales", "scater", "shiny", "shinyWidgets", "shinycssloaders", "shinyjs", "shinyvalidate", "standR", "stringr", "tibble", "tidyr", "withr"]
12371 },
12372 "shinyMethyl": {
12373 "name": "shinyMethyl",
12374 "version": "1.46.0",
12375 "sha256": "1p3hphp5b3r8wax2hhlkb1ifzqhqwl7yxnsjn4c2mhsi4im2ych0",
12376 "depends": ["Biobase", "BiocGenerics", "MatrixGenerics", "RColorBrewer", "htmltools", "minfi", "shiny"]
12377 },
12378 "shinybiocloader": {
12379 "name": "shinybiocloader",
12380 "version": "1.0.0",
12381 "sha256": "0hzkqbibmv8zsychb09babp4x895smvwfs8dpn75ic3ri7fx806k",
12382 "depends": ["htmltools", "shiny"]
12383 },
12384 "shinyepico": {
12385 "name": "shinyepico",
12386 "version": "1.18.0",
12387 "sha256": "0d4v6jir613fmqvmcz9s3y9fpdamj0h8mbdnqkxf60z2k1881vdr",
12388 "depends": ["DT", "GenomicRanges", "data_table", "doParallel", "dplyr", "foreach", "ggplot2", "gplots", "heatmaply", "limma", "minfi", "plotly", "reshape2", "rlang", "rmarkdown", "rtracklayer", "shiny", "shinyWidgets", "shinycssloaders", "shinyjs", "shinythemes", "statmod", "tidyr", "zip"]
12389 },
12390 "sigFeature": {
12391 "name": "sigFeature",
12392 "version": "1.28.0",
12393 "sha256": "0m0mqrg5hy0r6iaj7swnhb5s8x6j99rpagc38kynh4vahb6picq9",
12394 "depends": ["BiocParallel", "Matrix", "RColorBrewer", "SparseM", "SummarizedExperiment", "biocViews", "e1071", "nlme", "openxlsx", "pheatmap"]
12395 },
12396 "siggenes": {
12397 "name": "siggenes",
12398 "version": "1.84.0",
12399 "sha256": "1rz5yi9lb5qkw6ix0sv6yj3533wxvvwwpb0955lzfm5w06r46sff",
12400 "depends": ["Biobase", "multtest", "scrime"]
12401 },
12402 "sights": {
12403 "name": "sights",
12404 "version": "1.36.0",
12405 "sha256": "0awmi684h1gdv9a1yyz06yrdw6c81af54fw79bddwmf5yxfaxkcs",
12406 "depends": ["MASS", "ggplot2", "lattice", "qvalue", "reshape2"]
12407 },
12408 "signatureSearch": {
12409 "name": "signatureSearch",
12410 "version": "1.24.0",
12411 "sha256": "1c8jykqfsbpmpn52svaqkg2da2gzdyyfd96hm1sfwx15z02sg9cw",
12412 "depends": ["AnnotationDbi", "BiocGenerics", "BiocParallel", "DOSE", "DelayedArray", "ExperimentHub", "GSEABase", "HDF5Array", "Matrix", "RSQLite", "Rcpp", "SummarizedExperiment", "clusterProfiler", "data_table", "dplyr", "fastmatch", "fgsea", "ggplot2", "magrittr", "org_Hs_eg_db", "qvalue", "reactome_db", "readr", "reshape2", "rhdf5", "scales", "tibble", "visNetwork"]
12413 },
12414 "signeR": {
12415 "name": "signeR",
12416 "version": "2.12.0",
12417 "sha256": "1nlhxsq6v6nyadmfkyvibvgc9zg0r0s6lr5h60kvc1337ar8qzd4",
12418 "depends": ["BSgenome", "BiocFileCache", "BiocGenerics", "Biostrings", "DT", "GenomeInfoDb", "GenomicRanges", "IRanges", "MASS", "NMF", "PMCMRplus", "RColorBrewer", "Rcpp", "RcppArmadillo", "VGAM", "VariantAnnotation", "ada", "broom", "bsplus", "class", "clue", "cowplot", "dplyr", "e1071", "future", "future_apply", "ggplot2", "ggpubr", "glmnet", "kknn", "listenv", "magrittr", "maxstat", "nloptr", "pROC", "pheatmap", "ppclust", "proxy", "pvclust", "randomForest", "readr", "reshape2", "rtracklayer", "scales", "shiny", "shinyWidgets", "shinycssloaders", "shinydashboard", "survival", "survminer", "tibble", "tidyr"]
12419 },
12420 "signifinder": {
12421 "name": "signifinder",
12422 "version": "1.12.0",
12423 "sha256": "0apncbw90r1svawz7g76w13ai7djf04709mmr0anb27m1i74aa34",
12424 "depends": ["AnnotationDbi", "BiocGenerics", "ComplexHeatmap", "DGEobj_utils", "GSVA", "IRanges", "RColorBrewer", "SpatialExperiment", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "consensusOV", "cowplot", "dplyr", "ensembldb", "ggplot2", "ggridges", "magrittr", "matrixStats", "maxstat", "openair", "org_Hs_eg_db", "patchwork", "scales", "survival", "survminer", "viridis"]
12425 },
12426 "sigsquared": {
12427 "name": "sigsquared",
12428 "version": "1.42.0",
12429 "sha256": "1qm25yx8ykf35alqz8z0ky7akhc2zyzm568kfms6ravd0p41nyrk",
12430 "depends": ["Biobase", "survival"]
12431 },
12432 "simPIC": {
12433 "name": "simPIC",
12434 "version": "1.6.0",
12435 "sha256": "1qr70cz04grmawsz3ir5ycaj74782c66mf2ing5zlndh3z3vv696",
12436 "depends": ["BiocGenerics", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "actuar", "checkmate", "edgeR", "fitdistrplus", "matrixStats", "rlang", "scales", "scuttle", "withr"]
12437 },
12438 "similaRpeak": {
12439 "name": "similaRpeak",
12440 "version": "1.42.0",
12441 "sha256": "0s6602qzk8m9rnmifg17hpxj9f9i77lasg77ls7595n8ykb1l2kc",
12442 "depends": ["R6"]
12443 },
12444 "simona": {
12445 "name": "simona",
12446 "version": "1.8.0",
12447 "sha256": "0fv5qqlchbij486w2j7r2yndj2c497f4id0skq3r8pp735lgc84j",
12448 "depends": ["ComplexHeatmap", "GetoptLong", "GlobalOptions", "Polychrome", "Rcpp", "S4Vectors", "circlize", "fastmatch", "igraph", "matrixStats", "shiny", "xml2"]
12449 },
12450 "simpleSeg": {
12451 "name": "simpleSeg",
12452 "version": "1.12.0",
12453 "sha256": "1g0x3qc5ys0clwqw7vny7ld42n894xwpabxxnkyln610z30ifb6q",
12454 "depends": ["BiocParallel", "EBImage", "S4Vectors", "SummarizedExperiment", "cytomapper", "spatstat_geom", "terra"]
12455 },
12456 "simplifyEnrichment": {
12457 "name": "simplifyEnrichment",
12458 "version": "2.4.0",
12459 "sha256": "1vz0pjn8j3ia6gcwdlr1c8cxvdbhf6rscag1r7h43gj3fxmsi9m0",
12460 "depends": ["AnnotationDbi", "ComplexHeatmap", "GO_db", "GetoptLong", "GlobalOptions", "circlize", "clue", "cluster", "colorspace", "digest", "simona", "slam", "tm"]
12461 },
12462 "sincell": {
12463 "name": "sincell",
12464 "version": "1.42.0",
12465 "sha256": "1bnlw74nsi4as0x7azcjz52p9f3dw9zlhmc6iz37lvjkw75yany9",
12466 "depends": ["MASS", "Rcpp", "Rtsne", "TSP", "cluster", "entropy", "fastICA", "fields", "ggplot2", "igraph", "proxy", "reshape2", "scatterplot3d", "statmod"]
12467 },
12468 "singleCellTK": {
12469 "name": "singleCellTK",
12470 "version": "2.20.0",
12471 "sha256": "17my62dn584mvzzsnzv1m4h95lj22bsp280pypxab6f2g7achs5a",
12472 "depends": ["AnnotationHub", "Biobase", "BiocParallel", "ComplexHeatmap", "DESeq2", "DT", "DelayedArray", "DelayedMatrixStats", "DropletUtils", "ExperimentHub", "GSEABase", "GSVA", "GSVAdata", "KernSmooth", "MAST", "Matrix", "ROCR", "R_utils", "Rtsne", "S4Vectors", "Seurat", "SingleCellExperiment", "SingleR", "SoupX", "SummarizedExperiment", "TENxPBMCData", "TSCAN", "TrajectoryUtils", "VAM", "anndata", "ape", "batchelor", "celda", "celldex", "circlize", "cluster", "colorspace", "colourpicker", "cowplot", "data_table", "dplyr", "eds", "enrichR", "ensembldb", "fields", "ggplot2", "ggplotify", "ggrepel", "ggtree", "gridExtra", "igraph", "lifecycle", "limma", "magrittr", "matrixStats", "metap", "msigdbr", "multtest", "plotly", "plyr", "reshape2", "reticulate", "rlang", "rmarkdown", "scDblFinder", "scMerge", "scRNAseq", "scater", "scds", "scran", "scuttle", "shiny", "shinyalert", "shinycssloaders", "shinyjs", "stringr", "sva", "tibble", "tidyr", "tximport", "withr", "yaml", "zellkonverter", "zinbwave"]
12473 },
12474 "singscore": {
12475 "name": "singscore",
12476 "version": "1.30.0",
12477 "sha256": "1cyfhwwwq77ww5zdav17qzwh171h40dzi2plrzxqly808c5xxlqx",
12478 "depends": ["Biobase", "BiocParallel", "GSEABase", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "edgeR", "ggplot2", "ggrepel", "magrittr", "matrixStats", "plotly", "plyr", "reshape", "reshape2", "tidyr"]
12479 },
12480 "sitadela": {
12481 "name": "sitadela",
12482 "version": "1.18.0",
12483 "sha256": "118hxyj6m2j5c3vz8c00nf2lh7hyz39vvmm0zpnsmnp84g5dlwmz",
12484 "depends": ["Biobase", "BiocGenerics", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "RSQLite", "Rsamtools", "S4Vectors", "Seqinfo", "biomaRt", "rtracklayer", "txdbmaker"]
12485 },
12486 "sitePath": {
12487 "name": "sitePath",
12488 "version": "1.26.0",
12489 "sha256": "1bldgb3jxx5jbk9fl0mc7hhdxscs73rbclchjj6695jl9rf267g4",
12490 "depends": ["RColorBrewer", "Rcpp", "ape", "aplot", "ggplot2", "ggrepel", "ggtree", "gridExtra", "seqinr", "tidytree"]
12491 },
12492 "sizepower": {
12493 "name": "sizepower",
12494 "version": "1.80.0",
12495 "sha256": "054qgchvy9arxvdl3bwqiasn9x9p5cf9q79h5y95m06v82yp0iva",
12496 "depends": []
12497 },
12498 "sketchR": {
12499 "name": "sketchR",
12500 "version": "1.6.0",
12501 "sha256": "1hpnpspq9hiyx9yphcbz0z7ziq5fcj3nbci5zp3dnpiszpm7ahan",
12502 "depends": ["Biobase", "DelayedArray", "basilisk", "dplyr", "ggplot2", "reticulate", "rlang", "scales"]
12503 },
12504 "skewr": {
12505 "name": "skewr",
12506 "version": "1.42.0",
12507 "sha256": "1fp9r69nnr6zn2awbqx9gyrlyg1i4v91yg1087pd49i33zs9nsdv",
12508 "depends": ["IlluminaHumanMethylation450kmanifest", "RColorBrewer", "S4Vectors", "methylumi", "minfi", "mixsmsn", "wateRmelon"]
12509 },
12510 "slalom": {
12511 "name": "slalom",
12512 "version": "1.32.0",
12513 "sha256": "04l0pw0nm1s6j5s8jh577nzhsm38y7a4rvalplzcy8g9ppj64p5l",
12514 "depends": ["BH", "GSEABase", "Rcpp", "RcppArmadillo", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "rsvd"]
12515 },
12516 "slingshot": {
12517 "name": "slingshot",
12518 "version": "2.18.0",
12519 "sha256": "1gsz2a3hsc5yc4kyxkqfb6dbyfmdp41bmnas714pvabnwrcapjwd",
12520 "depends": ["S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TrajectoryUtils", "igraph", "matrixStats", "princurve"]
12521 },
12522 "smartid": {
12523 "name": "smartid",
12524 "version": "1.6.0",
12525 "sha256": "0iqnk5hpin79l43gzr6s29y7y79cd0w88lggrxsb2612nygpadd5",
12526 "depends": ["Matrix", "SummarizedExperiment", "dplyr", "ggplot2", "mclust", "mixtools", "sparseMatrixStats", "tidyr"]
12527 },
12528 "smoothclust": {
12529 "name": "smoothclust",
12530 "version": "1.6.0",
12531 "sha256": "1mrz1z0ah33jksrhiyww9xwlk50sgb57hlqhbffi455lkjs4vj2i",
12532 "depends": ["BiocNeighbors", "Matrix", "SpatialExperiment", "SummarizedExperiment"]
12533 },
12534 "smoppix": {
12535 "name": "smoppix",
12536 "version": "1.2.0",
12537 "sha256": "0xpv3x32jzfl9z82v6cayfm0fha64c27pv8r6sd9jzpffblkimxv",
12538 "depends": ["BiocParallel", "Rcpp", "Rdpack", "Rfast", "SpatialExperiment", "SummarizedExperiment", "extraDistr", "ggplot2", "lme4", "lmerTest", "openxlsx", "scam", "spatstat_geom", "spatstat_model", "spatstat_random"]
12539 },
12540 "snapcount": {
12541 "name": "snapcount",
12542 "version": "1.22.0",
12543 "sha256": "1v47chrbwghyxjmwp5jbzgjkgvrbj3ccy3kzwrqx1cv1sf0n5xgj",
12544 "depends": ["GenomicRanges", "IRanges", "Matrix", "R6", "SummarizedExperiment", "assertthat", "data_table", "httr", "jsonlite", "magrittr", "purrr", "rlang", "stringr"]
12545 },
12546 "snifter": {
12547 "name": "snifter",
12548 "version": "1.20.0",
12549 "sha256": "04ln62j4pa8fb3b46vbnrx729j05agak7n6zgalbdbwwyjs6r6sn",
12550 "depends": ["assertthat", "basilisk", "irlba", "reticulate"]
12551 },
12552 "snm": {
12553 "name": "snm",
12554 "version": "1.58.0",
12555 "sha256": "06lx70dw0iyqkvq1ps5hign6nldc88krxgx66xkvr7sk7v7fy3n9",
12556 "depends": ["corpcor", "lme4"]
12557 },
12558 "snpStats": {
12559 "name": "snpStats",
12560 "version": "1.60.0",
12561 "sha256": "0fyh1qzhfkiqdksxcwpr76mmlk13c6mi0m27kcdr5frb77kv1sq9",
12562 "depends": ["BiocGenerics", "Matrix", "survival"]
12563 },
12564 "sosta": {
12565 "name": "sosta",
12566 "version": "1.2.0",
12567 "sha256": "12hf6hyvip9ll2ipzhc9xs2s3y97gzwr55n6f23hhysd0n4qn9ds",
12568 "depends": ["EBImage", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "patchwork", "rlang", "sf", "smoothr", "spatstat_explore", "spatstat_geom", "spatstat_random", "terra"]
12569 },
12570 "spARI": {
12571 "name": "spARI",
12572 "version": "1.0.0",
12573 "sha256": "10vspwy7882wlmlsm873sz8rah4zlm5mzwzz6y2cihry342hyqkp",
12574 "depends": ["BiocParallel", "Matrix", "Rcpp", "SpatialExperiment", "SummarizedExperiment"]
12575 },
12576 "spaSim": {
12577 "name": "spaSim",
12578 "version": "1.12.0",
12579 "sha256": "1a5fb8d0yplg3chs9k4zrk12cdpzras37xnwv8372vzh75g2r1bc",
12580 "depends": ["RANN", "SpatialExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "spatstat_geom", "spatstat_random"]
12581 },
12582 "spacexr": {
12583 "name": "spacexr",
12584 "version": "1.2.0",
12585 "sha256": "1bgvm4gxb10k4p3q9d299xry803zskxmaxcxdkqy25kw5wc9rvsq",
12586 "depends": ["BiocFileCache", "BiocParallel", "Matrix", "SpatialExperiment", "SummarizedExperiment", "ggplot2", "httr", "memoise", "quadprog", "scatterpie"]
12587 },
12588 "sparrow": {
12589 "name": "sparrow",
12590 "version": "1.16.0",
12591 "sha256": "0zv0sccv0rm6jdyvzy4dgi3gir0zxb7r2pdl4g7qfms62ipim3bm",
12592 "depends": ["BiocGenerics", "BiocParallel", "BiocSet", "ComplexHeatmap", "DelayedMatrixStats", "GSEABase", "Matrix", "babelgene", "checkmate", "circlize", "data_table", "edgeR", "ggplot2", "irlba", "limma", "plotly", "viridis"]
12593 },
12594 "sparseMatrixStats": {
12595 "name": "sparseMatrixStats",
12596 "version": "1.22.0",
12597 "sha256": "15kychrmj4r4mmyjygwi69ayfm3fwfyjfbp475xylnwixyr5v7s4",
12598 "depends": ["Matrix", "MatrixGenerics", "Rcpp", "matrixStats"]
12599 },
12600 "sparsenetgls": {
12601 "name": "sparsenetgls",
12602 "version": "1.28.0",
12603 "sha256": "1bx8ypv17paz5kvbqmk2vd5cy1iciqmhprlrkhvl7v0shw61kcgc",
12604 "depends": ["MASS", "Matrix", "glmnet", "huge"]
12605 },
12606 "spatialDE": {
12607 "name": "spatialDE",
12608 "version": "1.16.0",
12609 "sha256": "1v9kp5qd99zm5zmf18xinki9jjc5xk3b741x2fz3vbc5dv3gxzaz",
12610 "depends": ["Matrix", "SpatialExperiment", "SummarizedExperiment", "basilisk", "checkmate", "ggplot2", "ggrepel", "gridExtra", "reticulate", "scales"]
12611 },
12612 "spatialFDA": {
12613 "name": "spatialFDA",
12614 "version": "1.2.0",
12615 "sha256": "1ddz26xncw3wmdy0jjxkaymrxgwd3i3rdcygq867zijrqqz7m0w1",
12616 "depends": ["ExperimentHub", "S4Vectors", "SpatialExperiment", "SummarizedExperiment", "dplyr", "fda", "ggplot2", "patchwork", "purrr", "refund", "scales", "spatstat_explore", "spatstat_geom", "tidyr"]
12617 },
12618 "spatialSimGP": {
12619 "name": "spatialSimGP",
12620 "version": "1.4.0",
12621 "sha256": "1xixl5ih67lkr254mdmc22qp5x6q6qm4krdpcxxjbljzfqw4yksd",
12622 "depends": ["MASS", "SpatialExperiment", "SummarizedExperiment"]
12623 },
12624 "specL": {
12625 "name": "specL",
12626 "version": "1.44.0",
12627 "sha256": "1bdsardyjf0gywjfgcrk2m3fmak5bd9brysn9cz7i7d9720xqs3y",
12628 "depends": ["DBI", "RSQLite", "protViz", "seqinr"]
12629 },
12630 "speckle": {
12631 "name": "speckle",
12632 "version": "1.10.0",
12633 "sha256": "0wn4myrbxamy7qqwzvfq8lb24ayxs1y6hh865v4rrjqdx6flww74",
12634 "depends": ["Seurat", "SingleCellExperiment", "edgeR", "ggplot2", "limma"]
12635 },
12636 "spicyR": {
12637 "name": "spicyR",
12638 "version": "1.22.0",
12639 "sha256": "00ljikrz4w3drqsfm8krm72nc1sg8wm0h18kfrifvfa6b9baydv0",
12640 "depends": ["BiocParallel", "ClassifyR", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "cli", "concaveman", "coxme", "data_table", "dplyr", "ggforce", "ggh4x", "ggnewscale", "ggplot2", "ggthemes", "lifecycle", "lmerTest", "magrittr", "pheatmap", "rlang", "scales", "scam", "simpleSeg", "spatstat_explore", "spatstat_geom", "survival", "tibble", "tidyr"]
12641 },
12642 "spikeLI": {
12643 "name": "spikeLI",
12644 "version": "2.70.0",
12645 "sha256": "09jbaxyx98haazh8hag0l2s8dzmn9djixvk4dvfs3ld9p80wknhg",
12646 "depends": []
12647 },
12648 "spiky": {
12649 "name": "spiky",
12650 "version": "1.16.0",
12651 "sha256": "02n2k80n6pwgdzllhf7kf38hb99hb43p2hbzw5k479brhjv72ayb",
12652 "depends": ["BSgenome", "Biostrings", "BlandAltmanLeh", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "bamlss", "ggplot2", "scales"]
12653 },
12654 "spillR": {
12655 "name": "spillR",
12656 "version": "1.6.0",
12657 "sha256": "1ac72p03xlzr4kg2wny7p17smrvprs6b5ng483x7369rsx7xf3di",
12658 "depends": ["CATALYST", "S4Vectors", "SummarizedExperiment", "dplyr", "ggplot2", "spatstat_univar", "tibble", "tidyr", "tidyselect"]
12659 },
12660 "spkTools": {
12661 "name": "spkTools",
12662 "version": "1.66.0",
12663 "sha256": "1rgqfnicbv7sf5fggpdchkqq0x3z08qhrcrl469182dcmz09m966",
12664 "depends": ["Biobase", "RColorBrewer", "gtools"]
12665 },
12666 "splatter": {
12667 "name": "splatter",
12668 "version": "1.34.0",
12669 "sha256": "0p9hr9p8b6n2q0mm1ihxydv53i5hn48pw03z4b50gz4d4w5nsqkv",
12670 "depends": ["BiocGenerics", "BiocParallel", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "checkmate", "crayon", "edgeR", "fitdistrplus", "locfit", "matrixStats", "rlang", "scuttle", "withr"]
12671 },
12672 "splineTimeR": {
12673 "name": "splineTimeR",
12674 "version": "1.38.0",
12675 "sha256": "11yqzli5v6vgkwxj5m6aw4h5m3p3x65nzyn90rhyxfsly46zldkr",
12676 "depends": ["Biobase", "FIs", "GSEABase", "GeneNet", "gtools", "igraph", "limma", "longitudinal"]
12677 },
12678 "splots": {
12679 "name": "splots",
12680 "version": "1.76.0",
12681 "sha256": "0b5n6gy87q1yg29a594avq2d7qssk0s3b33qd0ky62lb8innra4r",
12682 "depends": ["RColorBrewer"]
12683 },
12684 "spoon": {
12685 "name": "spoon",
12686 "version": "1.6.0",
12687 "sha256": "145h823ax4hc8a9y8vsd1s4gli47kcb6hcxffa0wk989yb249zj9",
12688 "depends": ["BRISC", "BiocParallel", "Matrix", "SpatialExperiment", "SummarizedExperiment", "nnSVG", "scuttle"]
12689 },
12690 "spqn": {
12691 "name": "spqn",
12692 "version": "1.22.0",
12693 "sha256": "1cj1b5zx5mb1mwi1apk8655hh76xjm6cr2wwrdn1df68z08pnspc",
12694 "depends": ["BiocGenerics", "SummarizedExperiment", "ggplot2", "ggridges", "matrixStats"]
12695 },
12696 "squallms": {
12697 "name": "squallms",
12698 "version": "1.4.0",
12699 "sha256": "13v0cwxjrspfhpcnm3v99kfa99vpdxkyy2045k9rrig5xjszwvzy",
12700 "depends": ["MSnbase", "MsExperiment", "RaMS", "caret", "data_table", "dplyr", "ggplot2", "keys", "plotly", "shiny", "tibble", "tidyr", "xcms"]
12701 },
12702 "srnadiff": {
12703 "name": "srnadiff",
12704 "version": "1.30.0",
12705 "sha256": "1b2xg8xmh00zsbnrhpl5mak52w3pmw67jnx57hkdm55kxdzhdjq3",
12706 "depends": ["BiocManager", "BiocParallel", "BiocStyle", "DESeq2", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "Rcpp", "Rsamtools", "S4Vectors", "Seqinfo", "SummarizedExperiment", "edgeR", "rtracklayer"]
12707 },
12708 "ssPATHS": {
12709 "name": "ssPATHS",
12710 "version": "1.24.0",
12711 "sha256": "1gn7j7hb030w9w0aqg9kd8i3dcanag73jjxvjm04ql4v0cvvclz2",
12712 "depends": ["MESS", "ROCR", "SummarizedExperiment", "dml"]
12713 },
12714 "sscu": {
12715 "name": "sscu",
12716 "version": "2.40.0",
12717 "sha256": "0p12i809pxvikddpamr8a8ri765aw8w76q98wd0f0c8x44xdy46r",
12718 "depends": ["BiocGenerics", "Biostrings", "seqinr"]
12719 },
12720 "ssize": {
12721 "name": "ssize",
12722 "version": "1.84.0",
12723 "sha256": "1z7yw4apg4j8as6ygf9dm8rgvjfvp67awks03hjw8a5x0ym7gv5j",
12724 "depends": ["gdata", "xtable"]
12725 },
12726 "ssrch": {
12727 "name": "ssrch",
12728 "version": "1.26.0",
12729 "sha256": "1z94gq0d706c372zd7kmakwzxzjkdzdf7a4sjdd08q8yds973vrb",
12730 "depends": ["DT", "shiny"]
12731 },
12732 "ssviz": {
12733 "name": "ssviz",
12734 "version": "1.44.0",
12735 "sha256": "0q029f4cgwa0jc0dcpz8v10779gwnz0c4ps6fls6miyxay5lkizw",
12736 "depends": ["Biostrings", "RColorBrewer", "Rsamtools", "ggplot2", "reshape"]
12737 },
12738 "stJoincount": {
12739 "name": "stJoincount",
12740 "version": "1.12.0",
12741 "sha256": "1m2crwvr5nca9358q8mwj2i53lci7lyn553kbj9c1wj4f5wwi9jy",
12742 "depends": ["Seurat", "SpatialExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "magrittr", "pheatmap", "raster", "sp", "spdep"]
12743 },
12744 "stPipe": {
12745 "name": "stPipe",
12746 "version": "1.0.0",
12747 "sha256": "0x20phlrv0mlyr9q7hs5pdz9vcm1lvh0qdjp3z6kry53l4cqql0n",
12748 "depends": ["DropletUtils", "Rcpp", "Rhdf5lib", "Rhtslib", "Rsubread", "Rtsne", "Seurat", "SeuratObject", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "basilisk", "data_table", "dplyr", "ggplot2", "pbmcapply", "reticulate", "rmarkdown", "scPipe", "shiny", "testthat", "umap", "yaml"]
12749 },
12750 "stageR": {
12751 "name": "stageR",
12752 "version": "1.32.0",
12753 "sha256": "1jivk3an5dh7hc0k21mg0pldpyfjwby09bj9r9ji75r9fwp20s6m",
12754 "depends": ["SummarizedExperiment"]
12755 },
12756 "standR": {
12757 "name": "standR",
12758 "version": "1.14.0",
12759 "sha256": "0w9p8lndd5daadw7q4yr812ww3npvmb9awjxwwkdjpy0qrkvm5ck",
12760 "depends": ["Biobase", "BiocGenerics", "RUVSeq", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "dplyr", "edgeR", "ggalluvial", "ggplot2", "limma", "mclustcomp", "patchwork", "readr", "rlang", "ruv", "tibble", "tidyr"]
12761 },
12762 "statTarget": {
12763 "name": "statTarget",
12764 "version": "1.40.0",
12765 "sha256": "1ch2gah8bivamm78d3gqa9abr91290nb45d1gl84l82hi00lin7b",
12766 "depends": ["ROC", "impute", "pdist", "pls", "plyr", "randomForest", "rrcov"]
12767 },
12768 "stepNorm": {
12769 "name": "stepNorm",
12770 "version": "1.82.0",
12771 "sha256": "1pab1ppdx3zj8s4j19yk54nmify91191q4mqf9b7y3kdv6m4kkhf",
12772 "depends": ["MASS", "marray"]
12773 },
12774 "strandCheckR": {
12775 "name": "strandCheckR",
12776 "version": "1.28.0",
12777 "sha256": "1djwigg75shja0nrkh63pwaaigpawwisywzyk5wfrkv1g30jr8a4",
12778 "depends": ["BiocGenerics", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "TxDb_Hsapiens_UCSC_hg38_knownGene", "dplyr", "ggplot2", "gridExtra", "reshape2", "rlang", "stringr", "tidyselect"]
12779 },
12780 "subSeq": {
12781 "name": "subSeq",
12782 "version": "1.40.0",
12783 "sha256": "1cyvjbhis1fc0qb9iskjggmik76bmjizb1mn7b3dkiqkdkhns96p",
12784 "depends": ["Biobase", "data_table", "digest", "dplyr", "ggplot2", "magrittr", "qvalue", "tidyr"]
12785 },
12786 "supersigs": {
12787 "name": "supersigs",
12788 "version": "1.18.0",
12789 "sha256": "01iq5xss5xyj88bkpf3vhcb8rh55bkcgm388055wc9kqyh2c0qvv",
12790 "depends": ["Biostrings", "SummarizedExperiment", "assertthat", "caret", "dplyr", "rlang", "rsample", "tidyr"]
12791 },
12792 "surfaltr": {
12793 "name": "surfaltr",
12794 "version": "1.16.0",
12795 "sha256": "0cx7qh51n57d6zwc4s589c3jc51l7rzrw8qhjhm197w9yyvsz0p1",
12796 "depends": ["Biostrings", "biomaRt", "dplyr", "ggplot2", "httr", "msa", "protr", "readr", "seqinr", "stringr", "testthat", "xml2"]
12797 },
12798 "survClust": {
12799 "name": "survClust",
12800 "version": "1.4.0",
12801 "sha256": "0462yjzrdwlm4bvxyh2vpijjrphkva36v4mhv5014ifrgdvg7i6k",
12802 "depends": ["MultiAssayExperiment", "Rcpp", "pdist", "survival"]
12803 },
12804 "survcomp": {
12805 "name": "survcomp",
12806 "version": "1.60.0",
12807 "sha256": "0fhi7kjcd26shx0qh1j8akcbiwyaxb5b7jzk1hyzmdqf4ffs98kw",
12808 "depends": ["KernSmooth", "SuppDists", "bootstrap", "ipred", "prodlim", "rmeta", "survival", "survivalROC"]
12809 },
12810 "survtype": {
12811 "name": "survtype",
12812 "version": "1.26.0",
12813 "sha256": "1c63fn4m7cg0vgj1rxxgrfxx002m331dprzv2zkfpg0ip1k5dmkm",
12814 "depends": ["SummarizedExperiment", "clustvarsel", "pheatmap", "survival", "survminer"]
12815 },
12816 "sva": {
12817 "name": "sva",
12818 "version": "3.58.0",
12819 "sha256": "0q2j31lf4bm9karlj0fnd04rxbi6h0dk5n3rcjcb4vd69aj05bfg",
12820 "depends": ["BiocParallel", "edgeR", "genefilter", "limma", "matrixStats", "mgcv"]
12821 },
12822 "svaNUMT": {
12823 "name": "svaNUMT",
12824 "version": "1.16.0",
12825 "sha256": "00kxwi11s84sx7dfrsc40s52jg9izsyrxvl9x94qd4fdfxlg78as",
12826 "depends": ["BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "S4Vectors", "Seqinfo", "StructuralVariantAnnotation", "VariantAnnotation", "assertthat", "dplyr", "pwalign", "rlang", "rtracklayer", "stringr"]
12827 },
12828 "svaRetro": {
12829 "name": "svaRetro",
12830 "version": "1.15.1",
12831 "sha256": "0cb1d9h35q72058if30k1fixairvrvra0k9lcarg8kalav5x7467",
12832 "depends": ["BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "S4Vectors", "Seqinfo", "StructuralVariantAnnotation", "VariantAnnotation", "assertthat", "dplyr", "rlang", "rtracklayer", "stringr"]
12833 },
12834 "swfdr": {
12835 "name": "swfdr",
12836 "version": "1.36.0",
12837 "sha256": "132fdhnp78ns5d7g2q60lvax098bamnv2kz7rw5s2dk06fj2gdhi",
12838 "depends": []
12839 },
12840 "switchBox": {
12841 "name": "switchBox",
12842 "version": "1.46.0",
12843 "sha256": "1das904wcjx90spw7rzj0w2w8i070gf18150wliw61s0901yljba",
12844 "depends": ["gplots", "pROC"]
12845 },
12846 "switchde": {
12847 "name": "switchde",
12848 "version": "1.36.0",
12849 "sha256": "0174ajkl30fkp9f85vbk7crfigaq0gcqwqykd2rz6cxg83znvpx6",
12850 "depends": ["SingleCellExperiment", "SummarizedExperiment", "dplyr", "ggplot2"]
12851 },
12852 "synapsis": {
12853 "name": "synapsis",
12854 "version": "1.16.0",
12855 "sha256": "1b5shghlsiiga8vng4ijw3w0jbmnyx5bhk6rbf099h1603v9dyp7",
12856 "depends": ["EBImage"]
12857 },
12858 "synergyfinder": {
12859 "name": "synergyfinder",
12860 "version": "3.18.0",
12861 "sha256": "1mdaksmhdq96bf64lq2jg7n94mgh5iaa071cx2wmf9iq0pamnzy9",
12862 "depends": ["SpatialExtremes", "dplyr", "drc", "furrr", "future", "ggforce", "ggplot2", "ggrepel", "gstat", "kriging", "lattice", "magrittr", "metR", "mice", "nleqslv", "pbapply", "plotly", "purrr", "reshape2", "sp", "stringr", "tidyr", "tidyverse", "vegan"]
12863 },
12864 "synlet": {
12865 "name": "synlet",
12866 "version": "2.10.0",
12867 "sha256": "12l0g6684rjm8vrw1l5gzcdsp4217h68m5b6jjq8wpbzk89m1fif",
12868 "depends": ["RColorBrewer", "RankProd", "data_table", "ggplot2", "magrittr", "patchwork"]
12869 },
12870 "syntenet": {
12871 "name": "syntenet",
12872 "version": "1.12.0",
12873 "sha256": "0znmvqxy70yypfpm3bfhz9jdrw1ihr8vlim8mh19cwpkmlm87rd2",
12874 "depends": ["BiocParallel", "Biostrings", "GenomicRanges", "RColorBrewer", "Rcpp", "ggnetwork", "ggplot2", "igraph", "intergraph", "pheatmap", "rlang", "testthat"]
12875 },
12876 "systemPipeR": {
12877 "name": "systemPipeR",
12878 "version": "2.16.0",
12879 "sha256": "1mpwjz0r5cy2r5745b4splygg6jycfnfrqrca9vqic3bnpsrc6gf",
12880 "depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "Rsamtools", "S4Vectors", "ShortRead", "SummarizedExperiment", "crayon", "ggplot2", "htmlwidgets", "magrittr", "stringr", "yaml"]
12881 },
12882 "systemPipeShiny": {
12883 "name": "systemPipeShiny",
12884 "version": "1.20.0",
12885 "sha256": "13a19n35gavrrnm8r0p7snl4cfjsb6nwhidyd5vv97bsj53dmvqw",
12886 "depends": ["DT", "R6", "RSQLite", "assertthat", "bsplus", "crayon", "dplyr", "drawer", "ggplot2", "glue", "htmltools", "magrittr", "openssl", "plotly", "rlang", "rstudioapi", "shiny", "shinyAce", "shinyFiles", "shinyWidgets", "shinydashboard", "shinydashboardPlus", "shinyjqui", "shinyjs", "shinytoastr", "spsComps", "spsUtil", "stringr", "styler", "tibble", "vroom", "yaml"]
12887 },
12888 "systemPipeTools": {
12889 "name": "systemPipeTools",
12890 "version": "1.18.0",
12891 "sha256": "1r1h14v9wrdxq7vnjhss7zax5hxygv215hp2y7r5lgzjfsh349ff",
12892 "depends": ["DESeq2", "DT", "GGally", "Rtsne", "SummarizedExperiment", "ape", "dplyr", "ggplot2", "ggrepel", "ggtree", "glmpca", "magrittr", "pheatmap", "plotly", "tibble"]
12893 },
12894 "tLOH": {
12895 "name": "tLOH",
12896 "version": "1.18.0",
12897 "sha256": "1qi4csdvwviz4dm9mdxigq8n0yp6axqzxi97d7dmp2hlyvz9y108",
12898 "depends": ["GenomicRanges", "MatrixGenerics", "VariantAnnotation", "bestNormalize", "data_table", "depmixS4", "dplyr", "ggplot2", "naniar", "purrr", "scales", "stringr"]
12899 },
12900 "tRNA": {
12901 "name": "tRNA",
12902 "version": "1.28.0",
12903 "sha256": "1c8q4i0xmbl3dl7ylid6wzw46l961pnrfb5pbv2jn31k1qc3ikif",
12904 "depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "Modstrings", "S4Vectors", "Structstrings", "XVector", "ggplot2", "scales", "stringr"]
12905 },
12906 "tRNAdbImport": {
12907 "name": "tRNAdbImport",
12908 "version": "1.28.0",
12909 "sha256": "1p3q1vy8hx2f96zjmwgkpzv0q5vvivi2p54blrx1i99mc6ady2vc",
12910 "depends": ["Biostrings", "GenomicRanges", "IRanges", "Modstrings", "S4Vectors", "Structstrings", "httr2", "stringr", "tRNA", "xml2"]
12911 },
12912 "tRNAscanImport": {
12913 "name": "tRNAscanImport",
12914 "version": "1.30.0",
12915 "sha256": "1xdwmbgmcqya010kfy2d5wlih922wkb8al93x0bnsf3k2cjmwg5h",
12916 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "Seqinfo", "Structstrings", "XVector", "rtracklayer", "stringr", "tRNA"]
12917 },
12918 "tRanslatome": {
12919 "name": "tRanslatome",
12920 "version": "1.48.0",
12921 "sha256": "01lmjdj2mf5j6zf007wgan4sfw6sjf89kd1wr6q08bscv3z7m2l7",
12922 "depends": ["Biobase", "DESeq2", "GOSemSim", "Heatplus", "RankProd", "anota", "edgeR", "gplots", "limma", "org_Hs_eg_db", "plotrix", "topGO"]
12923 },
12924 "tadar": {
12925 "name": "tadar",
12926 "version": "1.8.0",
12927 "sha256": "1a5h8kayfcbghq4ifbala2hp2awx1vcn0ka20ff49c351x1s46j2",
12928 "depends": ["BiocGenerics", "GenomicRanges", "Gviz", "IRanges", "MatrixGenerics", "Rsamtools", "S4Vectors", "Seqinfo", "VariantAnnotation", "ggplot2", "lifecycle", "rlang"]
12929 },
12930 "tanggle": {
12931 "name": "tanggle",
12932 "version": "1.16.0",
12933 "sha256": "1w7cbz3jwxa2qhcvx9x0vbmsdxc0jsfdf1qp06h4p2lqg9kaqfvd",
12934 "depends": ["ape", "dplyr", "ggplot2", "ggtree", "phangorn", "rlang"]
12935 },
12936 "target": {
12937 "name": "target",
12938 "version": "1.24.0",
12939 "sha256": "0ndb8vwvwfjl0wwjr783ijdlgaipa61lihzx0ja92s9p8lwyx4nr",
12940 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "matrixStats", "shiny"]
12941 },
12942 "tenXplore": {
12943 "name": "tenXplore",
12944 "version": "1.32.0",
12945 "sha256": "08iayrc4415mcs0niy2bjs43zhni89d82p8h6bkj2zaaprivash5",
12946 "depends": ["AnnotationDbi", "BiocFileCache", "SummarizedExperiment", "matrixStats", "ontoProc", "org_Mm_eg_db", "shiny"]
12947 },
12948 "terapadog": {
12949 "name": "terapadog",
12950 "version": "1.2.0",
12951 "sha256": "1fzjcrbxfdq4i7d42bajnd3v24ygb7ckm4mnycwbwcns15km2lxj",
12952 "depends": ["DESeq2", "KEGGREST", "biomaRt", "dplyr", "htmlwidgets", "plotly"]
12953 },
12954 "ternarynet": {
12955 "name": "ternarynet",
12956 "version": "1.54.0",
12957 "sha256": "12fl6szk85h317xc5pxfw2szyz93005bvsnlwg5drars652r24fs",
12958 "depends": ["BiocParallel", "igraph"]
12959 },
12960 "terraTCGAdata": {
12961 "name": "terraTCGAdata",
12962 "version": "1.14.0",
12963 "sha256": "0a8m9672w3wribzb7ah3cdcq1d610s1m26zq90jrwfy6glbd5jyq",
12964 "depends": ["AnVIL", "AnVILGCP", "BiocFileCache", "GenomicRanges", "MultiAssayExperiment", "RaggedExperiment", "S4Vectors", "TCGAutils", "dplyr", "readr", "tidyr"]
12965 },
12966 "tidyCoverage": {
12967 "name": "tidyCoverage",
12968 "version": "1.6.0",
12969 "sha256": "01d50vh3vmfnzn55vpkvmjpkdw8q3qjll20bbhw5vbi5drcc08wk",
12970 "depends": ["BiocIO", "BiocParallel", "GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "cli", "dplyr", "fansi", "ggplot2", "pillar", "purrr", "rlang", "rtracklayer", "scales", "tidyr", "vctrs"]
12971 },
12972 "tidyFlowCore": {
12973 "name": "tidyFlowCore",
12974 "version": "1.4.0",
12975 "sha256": "10gh3g5v9zpcky3i6hxy9kk648bcfpxxrjmfbfx44h1p7g62d4cs",
12976 "depends": ["Biobase", "dplyr", "flowCore", "ggplot2", "purrr", "rlang", "stringr", "tibble", "tidyr"]
12977 },
12978 "tidySingleCellExperiment": {
12979 "name": "tidySingleCellExperiment",
12980 "version": "1.20.0",
12981 "sha256": "033bwfygp97jn8dp9blw303mg9d00q4k0ps6w9040hc1af91x92r",
12982 "depends": ["Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "cli", "dplyr", "ellipsis", "fansi", "ggplot2", "lifecycle", "magrittr", "pillar", "pkgconfig", "purrr", "rlang", "stringr", "tibble", "tidyr", "tidyselect", "ttservice", "vctrs"]
12983 },
12984 "tidySpatialExperiment": {
12985 "name": "tidySpatialExperiment",
12986 "version": "1.5.1",
12987 "sha256": "0050syc762ff2mjx5sppl5f2v0qs9yhjigzxd7vp25kshm6jp5wg",
12988 "depends": ["BiocGenerics", "Matrix", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "cli", "dplyr", "fansi", "ggplot2", "lifecycle", "magick", "pillar", "pkgconfig", "plotly", "purrr", "rlang", "shiny", "stringr", "tibble", "tidySingleCellExperiment", "tidygate", "tidyr", "tidyselect", "ttservice", "vctrs"]
12989 },
12990 "tidySummarizedExperiment": {
12991 "name": "tidySummarizedExperiment",
12992 "version": "1.20.0",
12993 "sha256": "02icipy5jzjfk3g17pbc6z5skg7w9hz13ddm4fln8w0fdsxij5xk",
12994 "depends": ["S4Vectors", "SummarizedExperiment", "cli", "dplyr", "ellipsis", "fansi", "ggplot2", "lifecycle", "magrittr", "pillar", "pkgconfig", "plyxp", "purrr", "rlang", "stringr", "tibble", "tidyr", "tidyselect", "ttservice", "vctrs"]
12995 },
12996 "tidybulk": {
12997 "name": "tidybulk",
12998 "version": "2.0.0",
12999 "sha256": "19gzvnmraxssxcxw5jfg4j509ivmpacn1y6mczrk5c753sr6q2p0",
13000 "depends": ["GenomicRanges", "Matrix", "S4Vectors", "SummarizedExperiment", "crayon", "dplyr", "ggplot2", "lifecycle", "magrittr", "purrr", "rlang", "scales", "stringr", "tibble", "tidyr", "tidyselect", "ttservice"]
13001 },
13002 "tidyomics": {
13003 "name": "tidyomics",
13004 "version": "1.6.0",
13005 "sha256": "1bwyhs3sv01qk3197mpv0sq0s0776a5p89lk8579axi9flyvgya2",
13006 "depends": ["cli", "plyranges", "purrr", "rlang", "stringr", "tidySingleCellExperiment", "tidySpatialExperiment", "tidySummarizedExperiment", "tidyseurat"]
13007 },
13008 "tidysbml": {
13009 "name": "tidysbml",
13010 "version": "1.4.0",
13011 "sha256": "1c2yy1i5hfqa22znm7425zikdrsx9rzj07mncz19km9aaammrmm3",
13012 "depends": ["xml2"]
13013 },
13014 "tigre": {
13015 "name": "tigre",
13016 "version": "1.64.0",
13017 "sha256": "1kha8gpy9gwissf8hl9jb39bj5bmkbb1zc063c8vdsw02fwacpdw",
13018 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DBI", "RSQLite", "annotate", "gplots"]
13019 },
13020 "tilingArray": {
13021 "name": "tilingArray",
13022 "version": "1.88.0",
13023 "sha256": "069z6lvv238993dg66d6a6s6ql88410hxx2jccc64k9j090qj2rv",
13024 "depends": ["Biobase", "RColorBrewer", "affy", "genefilter", "pixmap", "strucchange", "vsn"]
13025 },
13026 "timeOmics": {
13027 "name": "timeOmics",
13028 "version": "1.22.0",
13029 "sha256": "0xqsxmn9jg475sbg54dbhqqs63154pqplpn0676fx96i8prv85rf",
13030 "depends": ["checkmate", "dplyr", "ggplot2", "ggrepel", "lmtest", "magrittr", "mixOmics", "plyr", "purrr", "stringr", "tibble", "tidyr"]
13031 },
13032 "timecourse": {
13033 "name": "timecourse",
13034 "version": "1.82.0",
13035 "sha256": "1zy6z2bhqzbkhn4y8fmf5jrn3qyvj4gjfhl1z1yj02xbc9xh6m1q",
13036 "depends": ["Biobase", "MASS", "limma", "marray"]
13037 },
13038 "timescape": {
13039 "name": "timescape",
13040 "version": "1.34.0",
13041 "sha256": "0dlvr08k8dr7fw1igzkigpwwrn9iy8ca1wnvgca082jczlxgh19w",
13042 "depends": ["dplyr", "gtools", "htmlwidgets", "jsonlite", "stringr"]
13043 },
13044 "tkWidgets": {
13045 "name": "tkWidgets",
13046 "version": "1.88.0",
13047 "sha256": "0y2zj1ikcdfk4n9ngh3d5k3jkbnqxx8pgp3mywbff6ijlnh3hvl9",
13048 "depends": ["DynDoc", "widgetTools"]
13049 },
13050 "tomoda": {
13051 "name": "tomoda",
13052 "version": "1.20.0",
13053 "sha256": "148fgacd38kqm7vrlhlh5bjddngzr999zsd2hb9shnpfjlaz8prl",
13054 "depends": ["RColorBrewer", "Rtsne", "SummarizedExperiment", "ggplot2", "ggrepel", "reshape2", "umap"]
13055 },
13056 "tomoseqr": {
13057 "name": "tomoseqr",
13058 "version": "1.14.0",
13059 "sha256": "1bbfbih0zq83051izdl2v9c218bqz6b3r13bn4xkg7g096588g4b",
13060 "depends": ["BiocFileCache", "animation", "dplyr", "ggplot2", "plotly", "purrr", "readr", "shiny", "stringr", "tibble"]
13061 },
13062 "topGO": {
13063 "name": "topGO",
13064 "version": "2.62.0",
13065 "sha256": "1qg9534rnfvysgwg7dbnv1px75xi19din2jlyxivfw9fdz2k3jkb",
13066 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DBI", "GO_db", "SparseM", "graph", "lattice", "matrixStats"]
13067 },
13068 "topconfects": {
13069 "name": "topconfects",
13070 "version": "1.26.0",
13071 "sha256": "1n27xg9s7ml8ys3mhb6m62rlh37f4n3g3v174vl5rjdwv3f21kaf",
13072 "depends": ["assertthat", "ggplot2", "scales"]
13073 },
13074 "topdownr": {
13075 "name": "topdownr",
13076 "version": "1.32.0",
13077 "sha256": "0ari49mb87gqkrlgk0ar31i4k4b989li7nnpkzsn8163m873qwqy",
13078 "depends": ["Biobase", "BiocGenerics", "Biostrings", "MSnbase", "Matrix", "PSMatch", "ProtGenerics", "S4Vectors", "ggplot2", "mzR"]
13079 },
13080 "tpSVG": {
13081 "name": "tpSVG",
13082 "version": "1.6.0",
13083 "sha256": "11fk4mipi0kql70mvys82pqfhzv5w4yphvv4b723i93xj54qgsba",
13084 "depends": ["BiocParallel", "MatrixGenerics", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "mgcv"]
13085 },
13086 "trackViewer": {
13087 "name": "trackViewer",
13088 "version": "1.46.0",
13089 "sha256": "1asyrcdq65135f2s551s543gvwcb651xmcbn9p3z2rrj53v0xxq2",
13090 "depends": ["AnnotationDbi", "BiocGenerics", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "InteractionSet", "Rsamtools", "S4Vectors", "Seqinfo", "grImport", "htmlwidgets", "rhdf5", "rtracklayer", "scales", "strawr", "txdbmaker"]
13091 },
13092 "tracktables": {
13093 "name": "tracktables",
13094 "version": "1.44.0",
13095 "sha256": "0r2wgl0ammh794rgcll22y31l2988bq2gf7605xiq43vf1sgipv9",
13096 "depends": ["GenomicRanges", "IRanges", "RColorBrewer", "Rsamtools", "XML", "XVector", "stringr", "tractor_base"]
13097 },
13098 "tradeSeq": {
13099 "name": "tradeSeq",
13100 "version": "1.24.0",
13101 "sha256": "1lyy5irrq4bqah9v8sff2mgfs5xa6sm62kxkbq0i0clnad9zhvj9",
13102 "depends": ["Biobase", "BiocParallel", "MASS", "Matrix", "RColorBrewer", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "TrajectoryUtils", "edgeR", "ggplot2", "igraph", "magrittr", "matrixStats", "mgcv", "pbapply", "princurve", "slingshot", "tibble", "viridis"]
13103 },
13104 "transcriptR": {
13105 "name": "transcriptR",
13106 "version": "1.37.0",
13107 "sha256": "18gxiwl1i5v10rxdprnpjylx57p2zfgpm5akb2vn7mzj24n4fhh3",
13108 "depends": ["BiocGenerics", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "caret", "chipseq", "e1071", "ggplot2", "pROC", "reshape2", "rtracklayer"]
13109 },
13110 "transcriptogramer": {
13111 "name": "transcriptogramer",
13112 "version": "1.32.0",
13113 "sha256": "03p4h5n589aiin7zzlc8a2ma7sw0l0v61vnh0sd7n1ix9ahx94sb",
13114 "depends": ["RedeR", "biomaRt", "data_table", "doSNOW", "foreach", "ggplot2", "igraph", "limma", "progress", "snow", "tidyr", "topGO"]
13115 },
13116 "transformGamPoi": {
13117 "name": "transformGamPoi",
13118 "version": "1.16.0",
13119 "sha256": "1r34723v0q39w693im6z77rpf4jradklzvxj0dlrzv4y6k9nrzy2",
13120 "depends": ["DelayedArray", "HDF5Array", "Matrix", "MatrixGenerics", "Rcpp", "SummarizedExperiment", "glmGamPoi"]
13121 },
13122 "transite": {
13123 "name": "transite",
13124 "version": "1.28.0",
13125 "sha256": "070rfxna1qdk9vibci4kjjh8mpv9mhm66hnb6bgyncwxsn4v520a",
13126 "depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "Rcpp", "TFMPvalue", "dplyr", "ggplot2", "gridExtra", "scales", "stringr"]
13127 },
13128 "transmogR": {
13129 "name": "transmogR",
13130 "version": "1.6.0",
13131 "sha256": "13pwks45wqia6zlbkn85rngzsnzr86d980hc48caafn59cj1b057",
13132 "depends": ["BSgenome", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "Seqinfo", "SummarizedExperiment", "VariantAnnotation", "data_table", "ggplot2", "jsonlite", "matrixStats", "patchwork", "scales"]
13133 },
13134 "transomics2cytoscape": {
13135 "name": "transomics2cytoscape",
13136 "version": "1.20.0",
13137 "sha256": "1r6yr82s78vmfff5nsxmhc098s8y20ii9a4rfxxy0b3rv15bz0ry",
13138 "depends": ["KEGGREST", "RCy3", "dplyr", "pbapply", "purrr", "tibble"]
13139 },
13140 "traseR": {
13141 "name": "traseR",
13142 "version": "1.40.0",
13143 "sha256": "1rwjfmliqihnbhybjk3svzpk02f80md6d8g8i51z03lnanjgca6f",
13144 "depends": ["BSgenome_Hsapiens_UCSC_hg19", "GenomicRanges", "IRanges"]
13145 },
13146 "treeclimbR": {
13147 "name": "treeclimbR",
13148 "version": "1.6.0",
13149 "sha256": "0kgkyl1kz7my9gxf2sb2h1xpb1hqr6zvs6zrjgprsgwy17p1cj32",
13150 "depends": ["S4Vectors", "SummarizedExperiment", "TreeSummarizedExperiment", "ape", "diffcyt", "dirmult", "dplyr", "edgeR", "ggnewscale", "ggplot2", "ggtree", "rlang", "tibble", "tidyr", "viridis"]
13151 },
13152 "treeio": {
13153 "name": "treeio",
13154 "version": "1.34.0",
13155 "sha256": "1hm8c1znf29cmprlsyfqaks56qqq034kmvnlfvb5x4r5b7drccqp",
13156 "depends": ["ape", "dplyr", "jsonlite", "magrittr", "rlang", "tibble", "tidytree", "yulab_utils"]
13157 },
13158 "treekoR": {
13159 "name": "treekoR",
13160 "version": "1.18.0",
13161 "sha256": "1ljq7a265flysfz7g0225ab46gqpws66nvgpm9pq901g9bjjh3sp",
13162 "depends": ["SingleCellExperiment", "ape", "data_table", "diffcyt", "dplyr", "edgeR", "ggiraph", "ggplot2", "ggtree", "hopach", "lme4", "multcomp", "patchwork", "tidyr"]
13163 },
13164 "tricycle": {
13165 "name": "tricycle",
13166 "version": "1.18.0",
13167 "sha256": "0iafaafqph9a1hjmgdzwjr8fn3cn98mfvy42i68kcbih0c4n25ib",
13168 "depends": ["AnnotationDbi", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "circular", "dplyr", "ggnewscale", "ggplot2", "scater", "scattermore"]
13169 },
13170 "trio": {
13171 "name": "trio",
13172 "version": "3.48.0",
13173 "sha256": "02x86cf6ahs8cdb2gani83059h7ryldy4m1s8gsc7nqsv0ryg1pj",
13174 "depends": ["LogicReg", "data_table", "siggenes", "survival"]
13175 },
13176 "triplex": {
13177 "name": "triplex",
13178 "version": "1.50.0",
13179 "sha256": "0q23akzzx374irjyj9sdvia46x626655rwccjqz2i2bak5azj87a",
13180 "depends": ["Biostrings", "GenomicRanges", "IRanges", "S4Vectors", "XVector"]
13181 },
13182 "tripr": {
13183 "name": "tripr",
13184 "version": "1.16.0",
13185 "sha256": "0n384vfxasbxspwryllzy37kgjgsn92q6x0asr2b4k0hksdn74r8",
13186 "depends": ["DT", "RColorBrewer", "config", "data_table", "dplyr", "golem", "gridExtra", "plot3D", "plotly", "plyr", "shiny", "shinyBS", "shinyFiles", "shinyjs", "stringdist", "stringr", "vegan"]
13187 },
13188 "ttgsea": {
13189 "name": "ttgsea",
13190 "version": "1.18.0",
13191 "sha256": "1pxpfmy7d0m1fq7mq6wl9p5kdnyqiyavfiqarmi66pyrqw375kyi",
13192 "depends": ["DiagrammeR", "data_table", "keras", "purrr", "stopwords", "text2vec", "textstem", "tm", "tokenizers"]
13193 },
13194 "tweeDEseq": {
13195 "name": "tweeDEseq",
13196 "version": "1.56.0",
13197 "sha256": "0vfxidfpl23m32v685ykyck7bfnmwzrncq2h10qcak3w0jfis5pc",
13198 "depends": ["MASS", "Rcpp", "cqn", "edgeR", "limma"]
13199 },
13200 "twilight": {
13201 "name": "twilight",
13202 "version": "1.86.0",
13203 "sha256": "0s01z7q645qs5900vnwkfgpzchwnwdb7yi72a3p2nnbbwhdk0yb3",
13204 "depends": ["Biobase"]
13205 },
13206 "twoddpcr": {
13207 "name": "twoddpcr",
13208 "version": "1.34.0",
13209 "sha256": "18v73fxsy1xlflx89dzsph039j307x356dkizckmrjmmr1v3hzdk",
13210 "depends": ["RColorBrewer", "S4Vectors", "class", "ggplot2", "hexbin", "scales", "shiny"]
13211 },
13212 "txcutr": {
13213 "name": "txcutr",
13214 "version": "1.16.0",
13215 "sha256": "14n4d74xlijf99nsmn6yj8q0nxx9gas8krkzmsmdpma232y2z791",
13216 "depends": ["AnnotationDbi", "BiocGenerics", "BiocParallel", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "rtracklayer", "txdbmaker"]
13217 },
13218 "txdbmaker": {
13219 "name": "txdbmaker",
13220 "version": "1.6.0",
13221 "sha256": "0rczknnbccc2vlbs0mkv89fqmr1myxjba12dvvyqfpnh7pcxfihp",
13222 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocIO", "DBI", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RSQLite", "S4Vectors", "Seqinfo", "UCSC_utils", "biomaRt", "httr", "rjson", "rtracklayer"]
13223 },
13224 "tximeta": {
13225 "name": "tximeta",
13226 "version": "1.28.0",
13227 "sha256": "0rpka083c8gw3crd1sp2vhlbk9rbyvnc6r5gnr55am73rp7dk3px",
13228 "depends": ["AnnotationDbi", "AnnotationHub", "BiocFileCache", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "Seqinfo", "SummarizedExperiment", "ensembldb", "jsonlite", "tibble", "txdbmaker", "tximport"]
13229 },
13230 "tximport": {
13231 "name": "tximport",
13232 "version": "1.38.0",
13233 "sha256": "1f6c8ha6gym85z96azr6939gdvwg4a6p07mlp9d79181vqwr4ps0",
13234 "depends": []
13235 },
13236 "uSORT": {
13237 "name": "uSORT",
13238 "version": "1.36.0",
13239 "sha256": "05hnsslcviqzia3vr3q1a23mk7jdly56gn7agdlrscn99wd4w34y",
13240 "depends": ["Biobase", "BiocGenerics", "Matrix", "RANN", "RSpectra", "VGAM", "cluster", "fpc", "gplots", "igraph", "monocle", "plyr"]
13241 },
13242 "uncoverappLib": {
13243 "name": "uncoverappLib",
13244 "version": "1.20.0",
13245 "sha256": "107rzv1q58mxhks8ggw4krghc2071fjf745zqcrysfmz6nr7byrx",
13246 "depends": ["BiocFileCache", "DT", "EnsDb_Hsapiens_v75", "EnsDb_Hsapiens_v86", "GenomicRanges", "Gviz", "Homo_sapiens", "OrganismDbi", "Rsamtools", "S4Vectors", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "condformat", "markdown", "openxlsx", "org_Hs_eg_db", "processx", "rappdirs", "rlist", "shiny", "shinyBS", "shinyWidgets", "shinycssloaders", "shinyjs", "stringr"]
13247 },
13248 "unifiedWMWqPCR": {
13249 "name": "unifiedWMWqPCR",
13250 "version": "1.46.0",
13251 "sha256": "1djpgr4y4vcf96acqqzlwf33mysfmpwj82iyzibsw4xxi17qr1yn",
13252 "depends": ["BiocGenerics", "limma"]
13253 },
13254 "universalmotif": {
13255 "name": "universalmotif",
13256 "version": "1.28.0",
13257 "sha256": "1vx95g37kw4nf297dgrbw7n83d94zzcjpy2bqs2c5wgi3bh3rfa6",
13258 "depends": ["BiocGenerics", "Biostrings", "IRanges", "MASS", "MatrixGenerics", "Rcpp", "RcppThread", "S4Vectors", "ggplot2", "rlang", "yaml"]
13259 },
13260 "updateObject": {
13261 "name": "updateObject",
13262 "version": "1.14.0",
13263 "sha256": "1rwlai7zj7gr43nppf6qnkzjdpyhd3wxnba4r1n0pkgjgpy6qwzv",
13264 "depends": ["BiocGenerics", "S4Vectors", "digest"]
13265 },
13266 "variancePartition": {
13267 "name": "variancePartition",
13268 "version": "1.40.0",
13269 "sha256": "0inwnrk6jppjfmsin7zjlfg250y7q7049x5nis2xqn559pfls37s",
13270 "depends": ["Biobase", "BiocParallel", "MASS", "Matrix", "Rdpack", "RhpcBLASctl", "aod", "corpcor", "fANCOVA", "ggplot2", "gplots", "gtools", "iterators", "limma", "lme4", "lmerTest", "matrixStats", "pbkrtest", "remaCor", "reshape2", "rlang", "scales"]
13271 },
13272 "vbmp": {
13273 "name": "vbmp",
13274 "version": "1.78.0",
13275 "sha256": "0cnswf82mzb5i36p2asv73rxxjbmdzp0silqfpl3xvh7j8dwqmsw",
13276 "depends": []
13277 },
13278 "velociraptor": {
13279 "name": "velociraptor",
13280 "version": "1.20.0",
13281 "sha256": "11752daakbh8gzhg4sg7bcph5m9gl3a7x5vsg21hiplayh5vsw25",
13282 "depends": ["BiocGenerics", "BiocParallel", "BiocSingular", "DelayedArray", "Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "basilisk", "reticulate", "scuttle", "zellkonverter"]
13283 },
13284 "veloviz": {
13285 "name": "veloviz",
13286 "version": "1.16.0",
13287 "sha256": "0gkvbcm1aj697fvb5yyw3hd7ysy7dbhz24xjqfnl8n0z3w3b8dvm",
13288 "depends": ["Matrix", "RSpectra", "Rcpp", "igraph", "mgcv"]
13289 },
13290 "vidger": {
13291 "name": "vidger",
13292 "version": "1.30.0",
13293 "sha256": "0nhbc0n82xk4qdkmv3d6fsaf7rmwq2hshi68yba6z75vjshkpfpa",
13294 "depends": ["Biobase", "DESeq2", "GGally", "RColorBrewer", "SummarizedExperiment", "edgeR", "ggplot2", "ggrepel", "knitr", "rmarkdown", "scales", "tidyr"]
13295 },
13296 "viper": {
13297 "name": "viper",
13298 "version": "1.44.0",
13299 "sha256": "1glm6xmbsppi0yhriyn44h32whjy004szn5bq5qmj4jdprqbj4yj",
13300 "depends": ["Biobase", "KernSmooth", "e1071", "mixtools"]
13301 },
13302 "visiumStitched": {
13303 "name": "visiumStitched",
13304 "version": "1.2.0",
13305 "sha256": "1w41968mlfkc5gmdw3h3jzmirvlnbsarkqirj0j2l4f1fgx2lgs7",
13306 "depends": ["BiocBaseUtils", "BiocGenerics", "DropletUtils", "Matrix", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "clue", "dplyr", "imager", "pkgcond", "readr", "rjson", "spatialLIBD", "stringr", "tibble", "tidyr", "xml2"]
13307 },
13308 "vissE": {
13309 "name": "vissE",
13310 "version": "1.18.0",
13311 "sha256": "1k7x0ihb34226xvq39v3hvknwybrwa0makdkq28zazfqlm1rk09g",
13312 "depends": ["GSEABase", "RColorBrewer", "ggforce", "ggplot2", "ggraph", "ggrepel", "ggwordcloud", "igraph", "msigdb", "plyr", "reshape2", "scales", "scico", "textstem", "tidygraph", "tm"]
13313 },
13314 "vmrseq": {
13315 "name": "vmrseq",
13316 "version": "1.2.0",
13317 "sha256": "138x3i1agw0j4m6i5jpvmfdk3kh9shy4pwzm93h4y8468hpfanm4",
13318 "depends": ["BiocParallel", "DelayedArray", "GenomicRanges", "HDF5Array", "IRanges", "S4Vectors", "SummarizedExperiment", "bumphunter", "data_table", "devtools", "dplyr", "gamlss_dist", "ggplot2", "locfit", "recommenderlab", "tidyr"]
13319 },
13320 "vsclust": {
13321 "name": "vsclust",
13322 "version": "1.12.0",
13323 "sha256": "0gnk0bd3nqzla5fbxpx3zd1612qzq84zpw7hsk2l0f3xgwl1zfr6",
13324 "depends": ["DOSE", "MultiAssayExperiment", "Rcpp", "clusterProfiler", "httr", "limma", "matrixStats", "qvalue", "shiny"]
13325 },
13326 "vsn": {
13327 "name": "vsn",
13328 "version": "3.78.0",
13329 "sha256": "07skbp8pq3anmlsmw0zqc2lhsis6wg9a6vid2535iy5hpj3d0yv0",
13330 "depends": ["Biobase", "affy", "ggplot2", "lattice", "limma"]
13331 },
13332 "vtpnet": {
13333 "name": "vtpnet",
13334 "version": "0.50.0",
13335 "sha256": "0zv8ci26f849k0rhh5c5hkgckymsp18hvqrh922sdf25c1khc8l7",
13336 "depends": ["GenomicRanges", "doParallel", "foreach", "graph", "gwascat"]
13337 },
13338 "vulcan": {
13339 "name": "vulcan",
13340 "version": "1.32.0",
13341 "sha256": "1m52ai4z96b7kddg1c1cnm33h0w0hyg6r9ny5z8y1zipk6qja8cv",
13342 "depends": ["Biobase", "ChIPpeakAnno", "DESeq2", "DiffBind", "GenomicRanges", "S4Vectors", "TxDb_Hsapiens_UCSC_hg19_knownGene", "caTools", "csaw", "gplots", "locfit", "viper", "wordcloud", "zoo"]
13343 },
13344 "waddR": {
13345 "name": "waddR",
13346 "version": "1.24.0",
13347 "sha256": "1x4kznzym44lsgn4hjfhqdqi04h8613qj7msvi3rwgnqi7qx0wg8",
13348 "depends": ["BiocFileCache", "BiocParallel", "Rcpp", "RcppArmadillo", "SingleCellExperiment", "arm", "eva"]
13349 },
13350 "wateRmelon": {
13351 "name": "wateRmelon",
13352 "version": "2.16.0",
13353 "sha256": "1rp0jyg8g36lixy5zx1p3vxbqz95gq2cm0ky6zzc406ac0nwskpv",
13354 "depends": ["Biobase", "IlluminaHumanMethylation450kanno_ilmn12_hg19", "ROC", "illuminaio", "limma", "lumi", "matrixStats", "methylumi"]
13355 },
13356 "wavClusteR": {
13357 "name": "wavClusteR",
13358 "version": "2.44.0",
13359 "sha256": "1pid5gbq2jadrlkdk5s7pw90id4bdwnmi2pxi9h171mx591cmm23",
13360 "depends": ["BiocGenerics", "Biostrings", "GenomicFeatures", "GenomicRanges", "Hmisc", "IRanges", "Rsamtools", "S4Vectors", "foreach", "ggplot2", "mclust", "rtracklayer", "seqinr", "stringr"]
13361 },
13362 "weaver": {
13363 "name": "weaver",
13364 "version": "1.76.0",
13365 "sha256": "0id7z8dxbdcsdmxc3hf91amy4y3s3iqyjsbr4vv01qdfb8y8dhsb",
13366 "depends": ["codetools", "digest"]
13367 },
13368 "webbioc": {
13369 "name": "webbioc",
13370 "version": "1.82.0",
13371 "sha256": "0s3i6y01vvni3jlivsw708ylj3g2byx8agf72x48wwhlmp0v9gck",
13372 "depends": ["Biobase", "BiocManager", "affy", "annaffy", "gcrma", "multtest", "qvalue", "vsn"]
13373 },
13374 "weitrix": {
13375 "name": "weitrix",
13376 "version": "1.22.0",
13377 "sha256": "00q7f6b1ib1kjnrmr3ps8cx2h5fc751zbl1kc7gh2wzg7gry9g5h",
13378 "depends": ["BiocGenerics", "BiocParallel", "Ckmeans_1d_dp", "DelayedArray", "DelayedMatrixStats", "RhpcBLASctl", "S4Vectors", "SummarizedExperiment", "assertthat", "dplyr", "ggplot2", "glm2", "limma", "purrr", "reshape2", "rlang", "scales", "topconfects"]
13379 },
13380 "widgetTools": {
13381 "name": "widgetTools",
13382 "version": "1.88.0",
13383 "sha256": "0p6mqkjzwrnrbjjhbsg5bhbwm4wb2bmiqgbq6npmlrmcxz9xgvnw",
13384 "depends": []
13385 },
13386 "wiggleplotr": {
13387 "name": "wiggleplotr",
13388 "version": "1.34.0",
13389 "sha256": "0w4y9z4irzs03z6vmniwyz605048vxqdsb7q0yl9p45h13pm885h",
13390 "depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "assertthat", "cowplot", "dplyr", "ggplot2", "purrr", "rtracklayer"]
13391 },
13392 "wpm": {
13393 "name": "wpm",
13394 "version": "1.20.0",
13395 "sha256": "04z1kgay2ix9hn434v9k9nja7jlvrz9ysrlajmzb1ipp51vw02q6",
13396 "depends": ["Biobase", "DT", "RColorBrewer", "SummarizedExperiment", "cli", "config", "dplyr", "ggplot2", "golem", "logging", "rlang", "shiny", "shinyWidgets", "shinycustomloader", "shinydashboard", "stringr"]
13397 },
13398 "xCell2": {
13399 "name": "xCell2",
13400 "version": "1.2.0",
13401 "sha256": "1h7d93jh4iqs6bj8s9dc6apcm1178yl5yxngvi55wpj1h5hi438z",
13402 "depends": ["AnnotationHub", "BiocParallel", "Matrix", "Rfast", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "magrittr", "minpack_lm", "ontologyIndex", "pracma", "progress", "quadprog", "readr", "singscore", "tibble"]
13403 },
13404 "xcms": {
13405 "name": "xcms",
13406 "version": "4.8.0",
13407 "sha256": "1d2p1hxa36423209cajl6b62rn7d1j0hf8s32p88yfxfv2rbswb8",
13408 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "IRanges", "MSnbase", "MassSpecWavelet", "MetaboCoreUtils", "MsCoreUtils", "MsExperiment", "MsFeatures", "ProtGenerics", "RColorBrewer", "S4Vectors", "Spectra", "SummarizedExperiment", "data_table", "lattice", "mzR", "progress"]
13409 },
13410 "xcore": {
13411 "name": "xcore",
13412 "version": "1.14.0",
13413 "sha256": "0ks6ki009604pnmb49yiyi7lqdx8wgmpxr4jqs60ik28pb5sgwv6",
13414 "depends": ["DelayedArray", "GenomicRanges", "IRanges", "Matrix", "MultiAssayExperiment", "S4Vectors", "edgeR", "foreach", "glmnet", "iterators", "magrittr"]
13415 },
13416 "xenLite": {
13417 "name": "xenLite",
13418 "version": "1.4.0",
13419 "sha256": "0fhl2lz68crvpb104r25pdwcvg567qxhsqkm941qxxv8inr08nmi",
13420 "depends": ["BiocFileCache", "EBImage", "HDF5Array", "Matrix", "S4Vectors", "SingleCellExperiment", "SpatialExperiment", "SummarizedExperiment", "TENxIO", "arrow", "dplyr", "ggplot2", "shiny"]
13421 },
13422 "xmapbridge": {
13423 "name": "xmapbridge",
13424 "version": "1.68.0",
13425 "sha256": "19f6wc6z42c978rd0pgg5kfs4b1bnnb0ywyc517wby6mqmhlgwai",
13426 "depends": []
13427 },
13428 "yamss": {
13429 "name": "yamss",
13430 "version": "1.36.0",
13431 "sha256": "0dixb373yx3jrmy9mm4z5mgqi37f271kv0fsj6a0mqd51429kacw",
13432 "depends": ["BiocGenerics", "EBImage", "IRanges", "Matrix", "S4Vectors", "SummarizedExperiment", "data_table", "limma", "mzR"]
13433 },
13434 "yarn": {
13435 "name": "yarn",
13436 "version": "1.36.0",
13437 "sha256": "1cv5mmzfqbgyzly9dbr3rxqgg5zk3vap0g3rjvh1f72rslv5fyj0",
13438 "depends": ["Biobase", "RColorBrewer", "biomaRt", "downloader", "edgeR", "gplots", "limma", "matrixStats", "preprocessCore", "quantro", "readr"]
13439 },
13440 "zFPKM": {
13441 "name": "zFPKM",
13442 "version": "1.32.0",
13443 "sha256": "1lrj0pj966mq0vcj76qy9f82kfvv9spjgd90ipbfdnrvswcka53c",
13444 "depends": ["SummarizedExperiment", "checkmate", "dplyr", "ggplot2", "tidyr"]
13445 },
13446 "zellkonverter": {
13447 "name": "zellkonverter",
13448 "version": "1.20.0",
13449 "sha256": "1w9kkx5qxskkxmq5y0x58pim5n9i4hms5mhm6y2n58qd1ja2qap2",
13450 "depends": ["DelayedArray", "Matrix", "S4Vectors", "SingleCellExperiment", "SparseArray", "SummarizedExperiment", "basilisk", "cli", "reticulate"]
13451 },
13452 "zenith": {
13453 "name": "zenith",
13454 "version": "1.12.0",
13455 "sha256": "02dm4gi996qb3v09915zg0b4ibakjv5gmv2p39i1x185y2rbjmr9",
13456 "depends": ["EnrichmentBrowser", "GSEABase", "Rdpack", "Rfast", "dplyr", "ggplot2", "limma", "msigdbr", "progress", "reshape2", "tidyr", "variancePartition"]
13457 },
13458 "zinbwave": {
13459 "name": "zinbwave",
13460 "version": "1.32.0",
13461 "sha256": "022pngsmgbkjgr7yp08pqhc83qbv42hdvjj47s4dfzhd6zyz301s",
13462 "depends": ["BiocParallel", "Matrix", "SingleCellExperiment", "SummarizedExperiment", "edgeR", "genefilter", "softImpute"]
13463 },
13464 "zitools": {
13465 "name": "zitools",
13466 "version": "1.4.0",
13467 "sha256": "01mgf9m4080ws92zbdgxg28qlh9ly83nqa78x20kwhci3x95xy88",
13468 "depends": ["BiocGenerics", "DESeq2", "MatrixGenerics", "RColorBrewer", "SummarizedExperiment", "VGAM", "dplyr", "ggplot2", "magrittr", "matrixStats", "phyloseq", "pscl", "reshape2", "tibble", "tidyr"]
13469 },
13470 "ABAEnrichment": {
13471 "name": "ABAEnrichment",
13472 "version": "1.2.2",
13473 "sha256": "0hmxxp12w67lp1g1djzlxffwlx32mnd1wbmz1hmv7y7z6h6ichvq",
13474 "depends": ["ABAData", "Rcpp", "gplots"],
13475 "broken": true
13476 },
13477 "ALPS": {
13478 "name": "ALPS",
13479 "version": "1.5.0",
13480 "sha256": "1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p",
13481 "depends": ["assertthat", "BiocParallel", "ChIPseeker", "corrplot", "data_table", "dplyr", "genefilter", "GenomicRanges", "GGally", "gghalves", "ggplot2", "ggseqlogo", "Gviz", "magrittr", "org_Hs_eg_db", "plyr", "reshape2", "rtracklayer", "stringr", "tibble", "tidyr", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene"],
13482 "broken": true
13483 },
13484 "APAlyzer": {
13485 "name": "APAlyzer",
13486 "version": "1.22.0",
13487 "sha256": "00a3barcm8yr4q7c9irpmg5v6v8ybzb2ww9mb1r7fdkg0kpj6dj9",
13488 "depends": ["DESeq2", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "HybridMTest", "Rsamtools", "Rsubread", "SummarizedExperiment", "VariantAnnotation", "dplyr", "ggplot2", "ggrepel", "repmis", "rtracklayer", "tidyr"],
13489 "broken": true
13490 },
13491 "ASpediaFI": {
13492 "name": "ASpediaFI",
13493 "version": "1.11.0",
13494 "sha256": "13jny6ca8hdf269z37baaggfs7jss00ln09apn42pj411g3p7nms",
13495 "depends": ["BiocParallel", "biomaRt", "dplyr", "DRaWR", "e1071", "fgsea", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "ggplot2", "Gviz", "igraph", "IRanges", "IVAS", "limma", "Matrix", "reshape2", "ROCR", "Rsamtools", "rtracklayer", "S4Vectors", "scales", "SummarizedExperiment"],
13496 "broken": true
13497 },
13498 "ATACCoGAPS": {
13499 "name": "ATACCoGAPS",
13500 "version": "1.6.0",
13501 "sha256": "09h32q9y7z65ck33rwqzw2wkl8l6016s0sdkhf2g094yxhkz26rh",
13502 "depends": ["BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Mmusculus_UCSC_mm10", "CoGAPS", "GeneOverlap", "GenomicFeatures", "GenomicRanges", "Homo_sapiens", "IRanges", "JASPAR2016", "Mus_musculus", "TFBSTools", "chromVAR", "dplyr", "fgsea", "gplots", "gtools", "motifmatchr", "msigdbr", "projectR", "rGREAT", "stringr", "tidyverse"],
13503 "broken": true
13504 },
13505 "AffyCompatible": {
13506 "name": "AffyCompatible",
13507 "version": "1.30.0",
13508 "sha256": "1qw741j4d9b7bczjz3s72a9d0dcxbh5a2raak3ggwmz72p53axfz",
13509 "depends": ["Biostrings", "RCurl", "XML"],
13510 "broken": true
13511 },
13512 "AffyExpress": {
13513 "name": "AffyExpress",
13514 "version": "1.36.0",
13515 "sha256": "186gc8c3bj070zvwyy4vz44wx1r85bbmil78b6m9kvwp6q1856d7",
13516 "depends": ["affy", "limma"],
13517 "broken": true
13518 },
13519 "AffyTiling": {
13520 "name": "AffyTiling",
13521 "version": "1.28.0",
13522 "sha256": "08n1w64yk1pxb9d8dpa86y3mqxrsvyq0gsfzlsqg6fz8jz497fhr",
13523 "depends": ["affxparser", "affy", "preprocessCore"],
13524 "broken": true
13525 },
13526 "AnalysisPageServer": {
13527 "name": "AnalysisPageServer",
13528 "version": "1.4.1",
13529 "sha256": "0zq0h9abswvhkpgb6f966rhgj7lh02aykq88fphxfv9zzkjfxbjp",
13530 "depends": ["Biobase", "graph", "log4r", "rjson"],
13531 "broken": true
13532 },
13533 "AneuFinder": {
13534 "name": "AneuFinder",
13535 "version": "1.35.0",
13536 "sha256": "0zx0brvcyi9id7xli9h5nk9an7j46p7zgjj3qmwr3jm4b95qahpl",
13537 "depends": ["AneuFinderData", "BiocGenerics", "Biostrings", "DNAcopy", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "bamsignals", "cowplot", "doParallel", "ecp", "foreach", "ggdendro", "ggplot2", "ggrepel", "mclust", "reshape2"],
13538 "broken": true
13539 },
13540 "AnnotationFuncs": {
13541 "name": "AnnotationFuncs",
13542 "version": "1.20.0",
13543 "sha256": "03rznpbsgq3pdh0id35vp8984f57ws2jpb0cww1qxglf967gy028",
13544 "depends": ["AnnotationDbi"],
13545 "broken": true
13546 },
13547 "ArrayExpressHTS": {
13548 "name": "ArrayExpressHTS",
13549 "version": "1.20.0",
13550 "sha256": "00a5h3nwwhi9phrys2gj0ba8a24iqxk09licb0jn1qzdz9mrfxmq",
13551 "depends": ["Biobase", "BiocGenerics", "Biostrings", "DESeq", "GenomicRanges", "Hmisc", "IRanges", "R2HTML", "RColorBrewer", "Rsamtools", "ShortRead", "XML", "biomaRt", "bitops", "edgeR", "rJava", "sampling", "sendmailR", "snow", "svMisc"],
13552 "broken": true
13553 },
13554 "ArrayTV": {
13555 "name": "ArrayTV",
13556 "version": "1.8.0",
13557 "sha256": "0ny5x2w0n3di5wzywfngsfdxaciczs24cnbvk75mv6hf4bdwfp74",
13558 "depends": ["DNAcopy", "foreach", "oligoClasses"],
13559 "broken": true
13560 },
13561 "ArrayTools": {
13562 "name": "ArrayTools",
13563 "version": "1.30.0",
13564 "sha256": "168llqk8w1b54xy0ijg0m8mzcwggawkdr4s7abi2fv4q5007s1jv",
13565 "depends": ["Biobase", "affy", "limma", "xtable"],
13566 "broken": true
13567 },
13568 "AtlasRDF": {
13569 "name": "AtlasRDF",
13570 "version": "1.6.0",
13571 "sha256": "16hgw47px7ig6hrm90y5nzy3dgdfm5my58bli20aj6dhnh2yvhxd",
13572 "depends": ["hash"],
13573 "broken": true
13574 },
13575 "Autotuner": {
13576 "name": "Autotuner",
13577 "version": "1.7.0",
13578 "sha256": "0k07gs6bnxs0894iqi1lhk96mifjcdf68bv4q9fjv50nzqpzqd8l",
13579 "depends": ["assertthat", "Biobase", "cluster", "entropy", "MSnbase", "mzR", "RColorBrewer", "scales"],
13580 "broken": true
13581 },
13582 "BAC": {
13583 "name": "BAC",
13584 "version": "1.30.0",
13585 "sha256": "1yrw01m8fd54v352pcb7904f8wi3il83nx8ywf6m968x33y2npxn",
13586 "depends": [],
13587 "broken": true
13588 },
13589 "BDMMAcorrect": {
13590 "name": "BDMMAcorrect",
13591 "version": "1.18.1",
13592 "sha256": "17lsgl5mczfk2flkrclxhsqkkpr6mncccywm68l0z02pi5xhd8j7",
13593 "depends": ["ape", "ellipse", "ggplot2", "Rcpp", "RcppArmadillo", "RcppEigen", "SummarizedExperiment", "vegan"],
13594 "broken": true
13595 },
13596 "BEARscc": {
13597 "name": "BEARscc",
13598 "version": "1.24.0",
13599 "sha256": "0f66pbhf4fz66021k7f6rlwzxdikznbhjqqpxwrj07yg65q5sd1l",
13600 "depends": ["SingleCellExperiment", "data_table", "ggplot2"],
13601 "broken": true
13602 },
13603 "BGmix": {
13604 "name": "BGmix",
13605 "version": "1.30.0",
13606 "sha256": "1ii0cvqpz7ai779r4hx8yimsx69ln1f7qlw7jvp3k606z52kqkp2",
13607 "depends": ["KernSmooth"],
13608 "broken": true
13609 },
13610 "BHC": {
13611 "name": "BHC",
13612 "version": "1.22.0",
13613 "sha256": "0m8w4b3ihnmvccy32nwvgzwn7k9i018ydw8iz19b6kz5r5c89q17",
13614 "depends": [],
13615 "broken": true
13616 },
13617 "BPRMeth": {
13618 "name": "BPRMeth",
13619 "version": "1.34.0",
13620 "sha256": "0p06wjxmhfq3nyz1cwj0ghl3rnwd9lkhgzrndzgxb2a9l6v74w2h",
13621 "depends": ["BiocStyle", "GenomicRanges", "IRanges", "MASS", "Rcpp", "RcppArmadillo", "S4Vectors", "assertthat", "cowplot", "data_table", "doParallel", "e1071", "earth", "foreach", "ggplot2", "kernlab", "magrittr", "matrixcalc", "mvtnorm", "randomForest", "truncnorm"],
13622 "broken": true
13623 },
13624 "BRGenomics": {
13625 "name": "BRGenomics",
13626 "version": "1.14.1",
13627 "sha256": "09kpb9jn84np1z8k72ngsbd0xx6v0x3kcl738wizr64w0j9zhlla",
13628 "depends": ["DESeq2", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "rtracklayer", "S4Vectors", "SummarizedExperiment"],
13629 "broken": true
13630 },
13631 "BayesPeak": {
13632 "name": "BayesPeak",
13633 "version": "1.22.0",
13634 "sha256": "1jmn8p461rmgjarf4rlhyqzrjg8xkpq56rlrk6964kqxp6jkh8bi",
13635 "depends": ["IRanges"],
13636 "broken": true
13637 },
13638 "BiGGR": {
13639 "name": "BiGGR",
13640 "version": "1.44.0",
13641 "sha256": "1awdwwg54cfnsn8kp0lw6a7c3mgix024ry7mxn9vb5xq4hp1gflb",
13642 "depends": ["hyperdraw", "hypergraph", "limSolve", "rsbml", "stringr"],
13643 "broken": true
13644 },
13645 "BioMM": {
13646 "name": "BioMM",
13647 "version": "1.15.0",
13648 "sha256": "01lfw0npcclcyqqh2xkhjq9jw0irbk13fsj5y1b3rz1amzzngg6p",
13649 "depends": ["BiocParallel", "CMplot", "e1071", "ggplot2", "glmnet", "imager", "lattice", "nsprcomp", "precrec", "ranger", "rms", "topGO", "vioplot", "xlsx"],
13650 "broken": true
13651 },
13652 "BioNetStat": {
13653 "name": "BioNetStat",
13654 "version": "1.22.0",
13655 "sha256": "1rbb36v64b9xbk2dsf6wsyrhwwbkysrj8fp1g22y3gisdk170sg8",
13656 "depends": ["BiocParallel", "DT", "ggplot2", "Hmisc", "igraph", "knitr", "markdown", "pathview", "pheatmap", "plyr", "psych", "RColorBrewer", "RJSONIO", "rmarkdown", "shiny", "shinyBS", "whisker", "yaml"],
13657 "broken": true
13658 },
13659 "BioPlex": {
13660 "name": "BioPlex",
13661 "version": "1.2.3",
13662 "sha256": "0cn0x6ij2a3xy61bq0qy5amp0ipj4r4shh7g0vlwbkrclj9w347r",
13663 "depends": ["BiocFileCache", "GenomeInfoDb", "GenomicRanges", "GEOquery", "graph", "SummarizedExperiment"],
13664 "broken": true
13665 },
13666 "BioSeqClass": {
13667 "name": "BioSeqClass",
13668 "version": "1.28.0",
13669 "sha256": "0pv63d57hck04dpha20pzyzz7przzvi536nmgnsig5zw16lis4f2",
13670 "depends": ["Biobase", "Biostrings", "class", "e1071", "foreign", "ipred", "klaR", "nnet", "party", "randomForest", "rpart", "scatterplot3d", "tree"],
13671 "broken": true
13672 },
13673 "BiocCaseStudies": {
13674 "name": "BiocCaseStudies",
13675 "version": "1.32.0",
13676 "sha256": "0wn3a01l6d62prrncmy22dx4nqsgzq3lw24ybf676ghrmjaygmyc",
13677 "depends": ["Biobase"],
13678 "broken": true
13679 },
13680 "BiocDockerManager": {
13681 "name": "BiocDockerManager",
13682 "version": "1.11.0",
13683 "sha256": "0w393f14i253pnk0jzf2ci4g5cnxshwdjmix2r8arlnadh7spjyk",
13684 "depends": ["dplyr", "httr", "memoise", "readr", "whisker"],
13685 "broken": true
13686 },
13687 "BiocInstaller": {
13688 "name": "BiocInstaller",
13689 "version": "1.20.3",
13690 "sha256": "0hjfhzbpxr7sfxac46ihklq0l7gkglrp7qi48vcp1s7xapnikblr",
13691 "depends": [],
13692 "broken": true
13693 },
13694 "BiocOncoTK": {
13695 "name": "BiocOncoTK",
13696 "version": "1.24.0",
13697 "sha256": "0h4cr7lrmbyx7kdj81s7ff75svr01rvzn54svqi93vjilawmpbm3",
13698 "depends": ["ComplexHeatmap", "DBI", "DT", "GenomicFeatures", "GenomicRanges", "IRanges", "MASS", "Rgraphviz", "S4Vectors", "SummarizedExperiment", "bigrquery", "car", "curatedTCGAData", "dplyr", "ggplot2", "ggpubr", "graph", "httr", "magrittr", "plyr", "rjson", "scales", "shiny"],
13699 "broken": true
13700 },
13701 "BitSeq": {
13702 "name": "BitSeq",
13703 "version": "1.14.0",
13704 "sha256": "1q58za8jd96bk2wxy7np0b7lar3v0pk6ll833k10x1b260rvpgbp",
13705 "depends": ["IRanges", "Rsamtools", "S4Vectors", "zlibbioc"],
13706 "broken": true
13707 },
13708 "BrainSABER": {
13709 "name": "BrainSABER",
13710 "version": "1.8.0",
13711 "sha256": "1nxcjvaip7pp387bhdc2pmjai3chib1n63ig0cslhppzzjp2y6jd",
13712 "depends": ["BiocFileCache", "biomaRt", "data_table", "lsa", "S4Vectors", "shiny", "SummarizedExperiment"],
13713 "broken": true
13714 },
13715 "BrainStars": {
13716 "name": "BrainStars",
13717 "version": "1.14.0",
13718 "sha256": "0r6jd6h48c15sg655079lwr9v1gl79wk8773w2q9fyfmakhj15vx",
13719 "depends": ["Biobase", "RCurl", "RJSONIO"],
13720 "broken": true
13721 },
13722 "BrowserVizDemo": {
13723 "name": "BrowserVizDemo",
13724 "version": "1.2.3",
13725 "sha256": "1pj9b0nhkrc3bcs36dpm2hy9lsfp2xwnrlf99b9v6n96ijki8bg9",
13726 "depends": ["BiocGenerics", "BrowserViz", "httpuv", "jsonlite"],
13727 "broken": true
13728 },
13729 "BubbleTree": {
13730 "name": "BubbleTree",
13731 "version": "2.38.0",
13732 "sha256": "1h3wyp9f554zlf4ah6dqgb1c26bkx1ks2q709hz3krchgzv3pinn",
13733 "depends": ["Biobase", "BiocGenerics", "BiocStyle", "GenomicRanges", "IRanges", "RColorBrewer", "WriteXLS", "biovizBase", "dplyr", "e1071", "ggplot2", "gridExtra", "gtable", "gtools", "limma", "magrittr", "plyr"],
13734 "broken": true
13735 },
13736 "CALIB": {
13737 "name": "CALIB",
13738 "version": "1.36.0",
13739 "sha256": "1b21f0zg4czhk4pbd3c3vbl0p4qpw0l4wg17lm1gw4b6d6ml7jsb",
13740 "depends": ["limma"],
13741 "broken": true
13742 },
13743 "CAnD": {
13744 "name": "CAnD",
13745 "version": "1.2.1",
13746 "sha256": "0ncpa81ac6dzkhqnr56i4nzzipsmzy44n71z6sdhpa39rgdar2a7",
13747 "depends": ["ggplot2", "reshape"],
13748 "broken": true
13749 },
13750 "CBEA": {
13751 "name": "CBEA",
13752 "version": "1.6.0",
13753 "sha256": "1mbd62wakjn9pwhy2q2hfxkx09ny577a4j6lssnjj65jb3s7gjr6",
13754 "depends": ["BiocParallel", "BiocSet", "Rcpp", "SummarizedExperiment", "TreeSummarizedExperiment", "dplyr", "fitdistrplus", "generics", "glue", "goftest", "lmom", "magrittr", "mixtools", "rlang", "tibble", "tidyr"],
13755 "broken": true
13756 },
13757 "CINdex": {
13758 "name": "CINdex",
13759 "version": "1.36.0",
13760 "sha256": "1cdmmnyxsrzlnsp15i8b072dfdsglql89ss1ddcwh4jyg8svwakl",
13761 "depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "bitops", "dplyr", "gplots", "gridExtra", "png", "som", "stringr"],
13762 "broken": true
13763 },
13764 "CNPBayes": {
13765 "name": "CNPBayes",
13766 "version": "1.0.0",
13767 "sha256": "06jw9xi0q5slh1xghgj1js5bn1gsmpag0w84cxa7qf5ls1bw4xp6",
13768 "depends": ["BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "Rcpp", "S4Vectors", "combinat", "foreach", "gtools", "matrixStats", "oligoClasses"],
13769 "broken": true
13770 },
13771 "CNVgears": {
13772 "name": "CNVgears",
13773 "version": "1.8.0",
13774 "sha256": "1p7dxzkna3czkpsidj586hfwhymrjwvjr6q5f2pq7zlmpn6f8svx",
13775 "depends": ["data_table", "ggplot2"],
13776 "broken": true
13777 },
13778 "CNVtools": {
13779 "name": "CNVtools",
13780 "version": "1.64.0",
13781 "sha256": "1sm28sl7ghcfrgjd0d741zfy21r6vxkhj8cn510z95aa49icpd8j",
13782 "depends": ["survival"],
13783 "broken": true
13784 },
13785 "COHCAP": {
13786 "name": "COHCAP",
13787 "version": "1.8.0",
13788 "sha256": "1lak57k8b8jcd21wajr1ivi1sml73fsvb6jbdz6nxgjbq7al1hgk",
13789 "depends": ["COHCAPanno", "WriteXLS"],
13790 "broken": true
13791 },
13792 "CORREP": {
13793 "name": "CORREP",
13794 "version": "1.36.0",
13795 "sha256": "0hjkwl2mf173mfdrziiadf5hacz6j67skizch44rxc2kfj7sbhyb",
13796 "depends": ["e1071"],
13797 "broken": true
13798 },
13799 "CRISPRball": {
13800 "name": "CRISPRball",
13801 "version": "1.4.0",
13802 "sha256": "0y1hqb6jb356qff3jclab47jkf8i65qdva3idixi20y9m009q5s8",
13803 "depends": ["ComplexHeatmap", "DT", "InteractiveComplexHeatmap", "PCAtools", "circlize", "colourpicker", "dittoSeq", "ggplot2", "htmlwidgets", "matrixStats", "plotly", "shiny", "shinyBS", "shinyWidgets", "shinycssloaders", "shinyjqui", "shinyjs"],
13804 "broken": true
13805 },
13806 "CSSP": {
13807 "name": "CSSP",
13808 "version": "1.8.0",
13809 "sha256": "05x0agbcpns8s3vmbs7ygdny249vcahzk7sqv50nz39ap2c7i309",
13810 "depends": [],
13811 "broken": true
13812 },
13813 "CancerInSilico": {
13814 "name": "CancerInSilico",
13815 "version": "2.18.0",
13816 "sha256": "0szbz88wnr3dbf7k9bhihv6hkr29gsp9vrllr201wx5qfzl2gncy",
13817 "depends": ["BH", "Rcpp"],
13818 "broken": true
13819 },
13820 "CancerMutationAnalysis": {
13821 "name": "CancerMutationAnalysis",
13822 "version": "1.13.0",
13823 "sha256": "0c3yjscd1jlgfl869vnv37qdb0y5gicnja1why9ws95qqgmij6zl",
13824 "depends": ["AnnotationDbi", "limma", "qvalue"],
13825 "broken": true
13826 },
13827 "CancerSubtypes": {
13828 "name": "CancerSubtypes",
13829 "version": "1.26.0",
13830 "sha256": "06lw7b43fwh554870w71i676q6gm6kx53580cgg17a7prdjndkmr",
13831 "depends": ["cluster", "ConsensusClusterPlus", "impute", "limma", "NMF", "sigclust", "survival"],
13832 "broken": true
13833 },
13834 "CellScore": {
13835 "name": "CellScore",
13836 "version": "1.27.0",
13837 "sha256": "11lhb46d5w3fq8qhlmap7wfirkpdnr6bqdpdarwxirrp076znvi2",
13838 "depends": ["Biobase", "RColorBrewer", "SummarizedExperiment", "gplots", "lsa", "squash"],
13839 "broken": true
13840 },
13841 "CellaRepertorium": {
13842 "name": "CellaRepertorium",
13843 "version": "1.12.0",
13844 "sha256": "0k9sxh0b9g2841zpkbmcc65v0kfyv1i6sxzdmbr49nzzm27xlbh2",
13845 "depends": ["BiocGenerics", "Biostrings", "dplyr", "forcats", "generics", "glue", "Matrix", "progress", "purrr", "Rcpp", "reshape2", "rlang", "S4Vectors", "stringr", "tibble", "tidyr"],
13846 "broken": true
13847 },
13848 "ChIC": {
13849 "name": "ChIC",
13850 "version": "1.19.0",
13851 "sha256": "0zbmhixxn3skn8csz93fyyfamz1n3gzjzb2caw8ybi2cysgzz5ys",
13852 "depends": ["BiocGenerics", "caret", "caTools", "ChIC_data", "genomeIntervals", "GenomicRanges", "IRanges", "progress", "randomForest", "Rsamtools", "S4Vectors"],
13853 "broken": true
13854 },
13855 "ChIPQC": {
13856 "name": "ChIPQC",
13857 "version": "1.44.0",
13858 "sha256": "1zmxyh9a26niix1rch1xl8imc4fwzjbdbbfbcq14hqhdjha0g95p",
13859 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "DiffBind", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "TxDb_Celegans_UCSC_ce6_ensGene", "TxDb_Dmelanogaster_UCSC_dm3_ensGene", "TxDb_Hsapiens_UCSC_hg18_knownGene", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Mmusculus_UCSC_mm10_knownGene", "TxDb_Mmusculus_UCSC_mm9_knownGene", "TxDb_Rnorvegicus_UCSC_rn4_ensGene", "chipseq", "ggplot2", "gtools", "reshape2"],
13860 "broken": true
13861 },
13862 "Clonality": {
13863 "name": "Clonality",
13864 "version": "1.18.0",
13865 "sha256": "0rx3k8c55q831dhfh5dpkl3px8jj6glx6i3la80r9krx68mbp947",
13866 "depends": ["DNAcopy"],
13867 "broken": true
13868 },
13869 "CoRegNet": {
13870 "name": "CoRegNet",
13871 "version": "1.6.0",
13872 "sha256": "0ynizawrygpka2isldbfmnlz1zqczx2fv1kbvz1lbm9qwbpj7rn4",
13873 "depends": ["arules", "igraph", "shiny"],
13874 "broken": true
13875 },
13876 "CoSIA": {
13877 "name": "CoSIA",
13878 "version": "1.8.0",
13879 "sha256": "1xkh2nms6pynpaaw1ckkp2d5vgi93m27jxac9js02cxixg1qmc3l",
13880 "depends": ["AnnotationDbi", "ExperimentHub", "RColorBrewer", "annotationTools", "biomaRt", "dplyr", "ggplot2", "homologene", "magrittr", "org_Ce_eg_db", "org_Dm_eg_db", "org_Dr_eg_db", "org_Hs_eg_db", "org_Mm_eg_db", "org_Rn_eg_db", "plotly", "readr", "stringr", "tibble", "tidyr", "tidyselect"],
13881 "broken": true
13882 },
13883 "CompGO": {
13884 "name": "CompGO",
13885 "version": "1.6.0",
13886 "sha256": "0n84z3mhg6zb3yafz0803g6cggzpbw31fn933q9bg7pybij0nf1p",
13887 "depends": ["GenomicFeatures", "RDAVIDWebService", "Rgraphviz", "TxDb_Mmusculus_UCSC_mm9_knownGene", "ggplot2", "pathview", "pcaMethods", "reshape2", "rtracklayer"],
13888 "broken": true
13889 },
13890 "CopyNumber450k": {
13891 "name": "CopyNumber450k",
13892 "version": "1.6.0",
13893 "sha256": "0z4v6x140gzaxf06a73d2qd6dp8gvq62l8xb7bii21r7n089m14i",
13894 "depends": ["Biobase", "BiocGenerics", "DNAcopy", "minfi", "preprocessCore"],
13895 "broken": true
13896 },
13897 "CopywriteR": {
13898 "name": "CopywriteR",
13899 "version": "2.2.0",
13900 "sha256": "0hmww433hyg4wgi2hx49mwrd4y65myyi00akys3mhdsxn3s0al13",
13901 "depends": ["BiocParallel", "CopyhelpeR", "DNAcopy", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "chipseq", "data_table", "futile_logger", "gtools", "matrixStats"],
13902 "broken": true
13903 },
13904 "CorMut": {
13905 "name": "CorMut",
13906 "version": "1.12.0",
13907 "sha256": "0ldqw4g15i4r1nv74msn97c75wcr1nvwk1ffnkafvnc8bwcfzfmy",
13908 "depends": ["igraph", "seqinr"],
13909 "broken": true
13910 },
13911 "CountClust": {
13912 "name": "CountClust",
13913 "version": "1.21.0",
13914 "sha256": "17px9jkpjwz0j2f5h8xv52wh24ilqvlb6dvczjc36lb7mq4cw3sq",
13915 "depends": ["cowplot", "flexmix", "ggplot2", "gtools", "limma", "maptpx", "picante", "plyr", "reshape2", "slam", "SQUAREM"],
13916 "broken": true
13917 },
13918 "CytoTree": {
13919 "name": "CytoTree",
13920 "version": "1.6.0",
13921 "sha256": "1dsdhwjkd3ngnw50fs6vz048afk47r95vhi0wqj8sip11nhndkd8",
13922 "depends": ["Biobase", "BiocNeighbors", "cluster", "destiny", "flowCore", "FlowSOM", "flowUtils", "ggplot2", "gmodels", "igraph", "limma", "Matrix", "matrixStats", "mclust", "pheatmap", "prettydoc", "RANN", "Rcpp", "Rtsne", "scatterpie", "scatterplot3d", "stringr", "sva", "umap"],
13923 "broken": true
13924 },
13925 "DASiR": {
13926 "name": "DASiR",
13927 "version": "1.10.0",
13928 "sha256": "1by2655qvskzynvbh47vydm6nl2cmnfqqs25453k29n672a6yyw4",
13929 "depends": ["Biostrings", "GenomicRanges", "IRanges", "XML"],
13930 "broken": true
13931 },
13932 "DAVIDQuery": {
13933 "name": "DAVIDQuery",
13934 "version": "1.29.0",
13935 "sha256": "0gvm6qjx8y61nbnbz66md74pfc4awj4900pjr8q1m5sip5yzbxj2",
13936 "depends": ["RCurl"],
13937 "broken": true
13938 },
13939 "DBChIP": {
13940 "name": "DBChIP",
13941 "version": "1.14.0",
13942 "sha256": "1x876cv2j0bdb7jflm663bp7xk32rsxpf9jwwskbl8r4r1ffsapa",
13943 "depends": ["DESeq", "edgeR"],
13944 "broken": true
13945 },
13946 "DChIPRep": {
13947 "name": "DChIPRep",
13948 "version": "1.0.4",
13949 "sha256": "0cwggkpbza25r2yssyhs9zkwzncmxkd406k2sn2y0rq1kdi08hj2",
13950 "depends": ["DESeq2", "GenomicRanges", "S4Vectors", "assertthat", "fdrtool", "ggplot2", "plyr", "reshape2", "smoothmest", "tidyr"],
13951 "broken": true
13952 },
13953 "DEComplexDisease": {
13954 "name": "DEComplexDisease",
13955 "version": "1.18.0",
13956 "sha256": "12gw9b0gdwyih51j2gzay6vxhycgc52n8svd0slv6wsbw5rc19lh",
13957 "depends": ["BiocParallel", "ComplexHeatmap", "DESeq2", "edgeR", "Rcpp", "SummarizedExperiment"],
13958 "broken": true
13959 },
13960 "DEDS": {
13961 "name": "DEDS",
13962 "version": "1.44.0",
13963 "sha256": "079c3in183ybp0c46hqh99grqmbshsnrcax3qz08z5xbc394azna",
13964 "depends": [],
13965 "broken": true
13966 },
13967 "DELocal": {
13968 "name": "DELocal",
13969 "version": "1.8.0",
13970 "sha256": "0hinzs1220hs7qfjv5na9cn7929wbrnvr409ay0vgphzkh92w30z",
13971 "depends": ["DESeq2", "SummarizedExperiment", "dplyr", "ggplot2", "limma", "matrixStats", "reshape2"],
13972 "broken": true
13973 },
13974 "DESeq": {
13975 "name": "DESeq",
13976 "version": "1.22.1",
13977 "sha256": "14rc1zcn4a7hkm43ca9js5ffhcm3awjrpl5bx66fj3szibjnnzcb",
13978 "depends": ["Biobase", "BiocGenerics", "MASS", "RColorBrewer", "genefilter", "geneplotter", "lattice", "locfit"],
13979 "broken": true
13980 },
13981 "DIAlignR": {
13982 "name": "DIAlignR",
13983 "version": "2.12.0",
13984 "sha256": "19zgjnd9sjxx09pcf50fl3w4fmd1gj8g765x114l0cqcpk9qfmm5",
13985 "depends": ["DBI", "RMSNumpress", "RSQLite", "Rcpp", "RcppEigen", "ape", "bit64", "data_table", "dplyr", "ggplot2", "magrittr", "mzR", "phangorn", "pracma", "reticulate", "rlang", "signal", "tidyr", "zoo"],
13986 "broken": true
13987 },
13988 "DMRforPairs": {
13989 "name": "DMRforPairs",
13990 "version": "1.6.0",
13991 "sha256": "0b5mkhb5gkvfccvpgvklb3ksnq9gv6napcvxzcrph46nmm11i8zc",
13992 "depends": ["GenomicRanges", "Gviz", "R2HTML"],
13993 "broken": true
13994 },
13995 "DOQTL": {
13996 "name": "DOQTL",
13997 "version": "1.6.0",
13998 "sha256": "0sl7a1hhszrfxn52iw7cz6sl38y7mwk4giw3a7kqj22f1p6bhc6y",
13999 "depends": ["BSgenome_Mmusculus_UCSC_mm10", "Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "QTLRel", "RUnit", "Rsamtools", "VariantAnnotation", "XML", "annotate", "annotationTools", "biomaRt", "corpcor", "doParallel", "foreach", "fpc", "hwriter", "iterators", "mclust", "regress", "rhdf5"],
14000 "broken": true
14001 },
14002 "DeProViR": {
14003 "name": "DeProViR",
14004 "version": "1.0.0",
14005 "sha256": "0m1nhzq5kl6jyi3d8fzb77iplzc4p85v7lj5q7i7125kjv6bycsm",
14006 "depends": ["BiocFileCache", "PRROC", "caret", "data_table", "dplyr", "fmsb", "ggplot2", "keras", "pROC", "readr"],
14007 "broken": true
14008 },
14009 "DeconRNASeq": {
14010 "name": "DeconRNASeq",
14011 "version": "1.50.0",
14012 "sha256": "06dkxdikfgiay72z9p0kmk8bayvdbrg641cl39nwk109dms0vc6f",
14013 "depends": ["ggplot2", "limSolve", "pcaMethods"],
14014 "broken": true
14015 },
14016 "DeepBlueR": {
14017 "name": "DeepBlueR",
14018 "version": "1.27.0",
14019 "sha256": "03v1ag250zq8wj3fxnsg2ii8l93vq6dg9dxqyiqdjnbvxc0y26xg",
14020 "depends": ["data_table", "diffr", "dplyr", "filehash", "foreach", "GenomeInfoDb", "GenomicRanges", "R_utils", "RCurl", "rjson", "rtracklayer", "settings", "stringr", "withr", "XML"],
14021 "broken": true
14022 },
14023 "Director": {
14024 "name": "Director",
14025 "version": "1.34.0",
14026 "sha256": "0xvpr1j36q46dlfympsivv5kxxnhskywc4fhxk0010yvx92ngpsw",
14027 "depends": ["htmltools"],
14028 "broken": true
14029 },
14030 "DupChecker": {
14031 "name": "DupChecker",
14032 "version": "1.8.0",
14033 "sha256": "0p75kq178mls765q2v22bj7a727hb1v5rj4wkcagxavcls92vg0p",
14034 "depends": ["RCurl", "R_utils"],
14035 "broken": true
14036 },
14037 "EBSeqHMM": {
14038 "name": "EBSeqHMM",
14039 "version": "1.4.0",
14040 "sha256": "02ba8famhbp4nxkg8jkwzs63qkfi7hi03h6w1igl2xn2343fnla3",
14041 "depends": ["EBSeq"],
14042 "broken": true
14043 },
14044 "EDDA": {
14045 "name": "EDDA",
14046 "version": "1.8.0",
14047 "sha256": "0gqgq57a11k7iygjyf3bszx8gm90a8frabmzib7kk84k3wrvynqg",
14048 "depends": ["DESeq", "ROCR", "Rcpp", "baySeq", "edgeR", "snow"],
14049 "broken": true
14050 },
14051 "ELBOW": {
14052 "name": "ELBOW",
14053 "version": "1.6.0",
14054 "sha256": "1kpprsv1s08qks10raqdh82c9w8dg0saxa1ahhnk1a2whzxj0n3m",
14055 "depends": [],
14056 "broken": true
14057 },
14058 "ENCODExplorer": {
14059 "name": "ENCODExplorer",
14060 "version": "1.2.4",
14061 "sha256": "0vx4q628g0h1wdcp4hibs44h8avnyin0ccxijrdk94s5n2f91pc2",
14062 "depends": ["RSQLite", "jsonlite"],
14063 "broken": true
14064 },
14065 "ENVISIONQuery": {
14066 "name": "ENVISIONQuery",
14067 "version": "1.18.0",
14068 "sha256": "1fyp6qyvw5cbapnpjx1s86pss2xhv98s4lqxfxwrsng6p1jh5z89",
14069 "depends": ["XML", "rJava"],
14070 "broken": true
14071 },
14072 "EasyqpcR": {
14073 "name": "EasyqpcR",
14074 "version": "1.12.0",
14075 "sha256": "0s0ir8bpj3fwg79mzqz57c0crkqqq7hywiwyihcz2cykhsm1r11g",
14076 "depends": ["matrixStats", "plotrix", "plyr"],
14077 "broken": true
14078 },
14079 "EnhancedVolcano": {
14080 "name": "EnhancedVolcano",
14081 "version": "1.26.0",
14082 "sha256": "19dxqk5dk9443a3949y3b2dhcphhn2lvi6fvlakqxll2lvhjqivi",
14083 "depends": ["ggplot2", "ggrepel"],
14084 "broken": true
14085 },
14086 "ExpressionView": {
14087 "name": "ExpressionView",
14088 "version": "1.22.0",
14089 "sha256": "1gwhz8q5kyi01jwlwpd39dp292pc6k4v1w0al4653151qb5m55ja",
14090 "depends": ["AnnotationDbi", "GO_db", "KEGG_db", "bitops", "caTools", "eisa", "isa2"],
14091 "broken": true
14092 },
14093 "FCBF": {
14094 "name": "FCBF",
14095 "version": "2.8.0",
14096 "sha256": "1clg3s2av70j0pm0yj0ckvlklkkg5zb0r057pz6wmklllfkmx1dv",
14097 "depends": ["ggplot2", "gridExtra", "mclust", "pbapply", "SummarizedExperiment"],
14098 "broken": true
14099 },
14100 "FEM": {
14101 "name": "FEM",
14102 "version": "2.6.0",
14103 "sha256": "1pwbn2igwrd50wn8402f3zwd22h4c8anjmbrls2i6h86ardl046f",
14104 "depends": ["AnnotationDbi", "BiocGenerics", "Matrix", "corrplot", "graph", "igraph", "impute", "limma", "marray", "org_Hs_eg_db"],
14105 "broken": true
14106 },
14107 "FScanR": {
14108 "name": "FScanR",
14109 "version": "1.10.0",
14110 "sha256": "1v4iq2wlvxf0wbs2d9ip3pcfx3a533pqp4as9pr0f6q57cvqi2bs",
14111 "depends": [],
14112 "broken": true
14113 },
14114 "FindMyFriends": {
14115 "name": "FindMyFriends",
14116 "version": "1.0.7",
14117 "sha256": "0ga0iwscbcczysldizgp8g19gsyszfw4vgbgs45q9px95603z0cg",
14118 "depends": ["Biobase", "BiocParallel", "Biostrings", "IRanges", "Matrix", "Rcpp", "S4Vectors", "digest", "dplyr", "filehash", "ggdendro", "ggplot2", "gtable", "igraph", "kebabs", "reshape2"],
14119 "broken": true
14120 },
14121 "FlowRepositoryR": {
14122 "name": "FlowRepositoryR",
14123 "version": "1.2.0",
14124 "sha256": "1y1y7g9111z55cwi2ph44yqib41234g77xwsybk6irlq1anizz7p",
14125 "depends": ["RCurl", "XML"],
14126 "broken": true
14127 },
14128 "FoldGO": {
14129 "name": "FoldGO",
14130 "version": "1.18.0",
14131 "sha256": "0h08yv1kykllaanc562ncwv3ajic7cd4wcqba24nlbh6agsazwyk",
14132 "depends": ["ggplot2", "tidyr", "topGO"],
14133 "broken": true
14134 },
14135 "FourCSeq": {
14136 "name": "FourCSeq",
14137 "version": "1.4.0",
14138 "sha256": "1xh0l90hp6jy9j0xkh78dm9kyk90zzlg04yfrzd4v12mwljs8r19",
14139 "depends": ["Biobase", "Biostrings", "DESeq2", "GenomicAlignments", "GenomicRanges", "LSD", "Matrix", "Rsamtools", "SummarizedExperiment", "fda", "ggbio", "ggplot2", "gtools", "reshape2", "rtracklayer"],
14140 "broken": true
14141 },
14142 "FunChIP": {
14143 "name": "FunChIP",
14144 "version": "1.28.0",
14145 "sha256": "1qhwabm7vgjqmgxdla6qs70sncvzjc8qh5vpq5xqp50hk1lli7f1",
14146 "depends": ["doParallel", "fda", "foreach", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "RColorBrewer", "Rcpp", "Rsamtools", "shiny"],
14147 "broken": true
14148 },
14149 "FunciSNP": {
14150 "name": "FunciSNP",
14151 "version": "1.12.0",
14152 "sha256": "1125ismkp2sprshv4b39l6bycdlry3933jaliva17c0bgjr27jhm",
14153 "depends": ["AnnotationDbi", "ChIPpeakAnno", "FunciSNP_data", "GenomicRanges", "IRanges", "Rsamtools", "TxDb_Hsapiens_UCSC_hg19_knownGene", "VariantAnnotation", "ggplot2", "org_Hs_eg_db", "plyr", "reshape", "rtracklayer", "scales", "snpStats"],
14154 "broken": true
14155 },
14156 "GAPGOM": {
14157 "name": "GAPGOM",
14158 "version": "1.11.0",
14159 "sha256": "0sl97w5zx4zdrdbcwayqyvgxspaxpbils3mpsrim0zlspjrjcy6z",
14160 "depends": ["AnnotationDbi", "Biobase", "BiocFileCache", "data_table", "dplyr", "fastmatch", "GEOquery", "GO_db", "GOSemSim", "graph", "igraph", "magrittr", "Matrix", "matrixStats", "org_Hs_eg_db", "org_Mm_eg_db", "plyr", "RBGL"],
14161 "broken": true
14162 },
14163 "GCSConnection": {
14164 "name": "GCSConnection",
14165 "version": "1.7.0",
14166 "sha256": "1psmw3825whyzvbzqpqksgcl09b6kfyb8k5vny6ljkjbac1jzvnf",
14167 "depends": ["googleAuthR", "googleCloudStorageR", "httr", "jsonlite", "Rcpp"],
14168 "broken": true
14169 },
14170 "GCSFilesystem": {
14171 "name": "GCSFilesystem",
14172 "version": "1.6.0",
14173 "sha256": "0qk8xyg06f71y4r1q1zpcj89irh9i6cd9z6nqlx635x8if84sh6d",
14174 "depends": [],
14175 "broken": true
14176 },
14177 "GCSscore": {
14178 "name": "GCSscore",
14179 "version": "1.14.0",
14180 "sha256": "0fqr0sgplpbkdpvwgi8fpmwmnqja41622pvkkzsalbzai021hgp3",
14181 "depends": ["affxparser", "Biobase", "BiocManager", "data_table", "devtools", "dplR", "RSQLite", "stringr"],
14182 "broken": true
14183 },
14184 "GENE_E": {
14185 "name": "GENE.E",
14186 "version": "1.10.0",
14187 "sha256": "1czm1j144i842d7lf01c9gmyifikp4a66sq49i7rgpzbiz3pndkf",
14188 "depends": ["RCurl", "rhdf5"],
14189 "broken": true
14190 },
14191 "GEOexplorer": {
14192 "name": "GEOexplorer",
14193 "version": "1.14.0",
14194 "sha256": "144pj7aj93rjg315biizapg1m9yywyfx27pk9646klqnrnp2yxi5",
14195 "depends": ["Biobase", "DT", "GEOquery", "R_utils", "XML", "car", "edgeR", "enrichR", "factoextra", "ggplot2", "heatmaply", "htmltools", "httr", "impute", "knitr", "limma", "markdown", "pheatmap", "plotly", "readxl", "scales", "shiny", "shinyHeatmaply", "shinybusy", "shinycssloaders", "stringr", "sva", "umap", "xfun", "xml2"],
14196 "broken": true
14197 },
14198 "GEOsearch": {
14199 "name": "GEOsearch",
14200 "version": "1.0.1",
14201 "sha256": "1zag3rg2cfs0zfh092rzwhshnkncrv2p88flz9hy2n350k1xnyc4",
14202 "depends": ["org_Hs_eg_db", "org_Mm_eg_db"],
14203 "broken": true
14204 },
14205 "GGBase": {
14206 "name": "GGBase",
14207 "version": "3.32.0",
14208 "sha256": "15vvwigv9xy87dl2c795c3abpnrzr364m4sbslmns403rg8dpsiw",
14209 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "Matrix", "S4Vectors", "SummarizedExperiment", "digest", "genefilter", "limma", "snpStats"],
14210 "broken": true
14211 },
14212 "GGtools": {
14213 "name": "GGtools",
14214 "version": "5.6.0",
14215 "sha256": "1ndvlyfzjn519z9zh6kf5sdjaz3ckracgyf2lxp23nchm2311lf0",
14216 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "Biostrings", "GGBase", "GenomeInfoDb", "GenomicRanges", "Gviz", "IRanges", "ROCR", "Rsamtools", "S4Vectors", "VariantAnnotation", "biglm", "bit", "data_table", "ff", "ggplot2", "hexbin", "iterators", "reshape2", "rtracklayer", "snpStats"],
14217 "broken": true
14218 },
14219 "GISPA": {
14220 "name": "GISPA",
14221 "version": "1.26.0",
14222 "sha256": "19vbcfdf959xs6kgds37ij3qay9x61dzrlvcs238m7hywl4dn3lz",
14223 "depends": ["Biobase", "changepoint", "data_table", "genefilter", "GSEABase", "HH", "lattice", "latticeExtra", "plyr", "scatterplot3d"],
14224 "broken": true
14225 },
14226 "GOFunction": {
14227 "name": "GOFunction",
14228 "version": "1.18.0",
14229 "sha256": "00pdxf24sxdnh31h69c5zjhl1j2jv1ag91ay3a9w62p07bcg82l6",
14230 "depends": ["AnnotationDbi", "Biobase", "GO_db", "Rgraphviz", "SparseM", "graph"],
14231 "broken": true
14232 },
14233 "GOSim": {
14234 "name": "GOSim",
14235 "version": "1.8.0",
14236 "sha256": "14dyazr7p9p7h1cckbmd5yjj76718lqgfnqbcrrz52qyk0dqz6wx",
14237 "depends": ["AnnotationDbi", "GO_db", "Matrix", "RBGL", "Rcpp", "annotate", "cluster", "corpcor", "flexmix", "graph", "org_Hs_eg_db", "topGO"],
14238 "broken": true
14239 },
14240 "GOsummaries": {
14241 "name": "GOsummaries",
14242 "version": "2.4.7",
14243 "sha256": "0kl77jqd2bdbp8v2rrjp21j265r05fnagpz8jwj8m9scgrd5hwh4",
14244 "depends": ["Rcpp", "gProfileR", "ggplot2", "gtable", "limma", "plyr", "reshape2"],
14245 "broken": true
14246 },
14247 "GRridge": {
14248 "name": "GRridge",
14249 "version": "1.22.0",
14250 "sha256": "0vmwm50dwk3im3qx40vh9ipmfqywzz5fmmm79b74zjcd3qjrznf3",
14251 "depends": ["glmnet", "graph", "Iso", "mvtnorm", "penalized", "survival"],
14252 "broken": true
14253 },
14254 "GeDi": {
14255 "name": "GeDi",
14256 "version": "1.4.0",
14257 "sha256": "0mxnbk0xqwc8v4vn50s59gb8gxl5y4dwy8n6sg2ydd23qzd2al9p",
14258 "depends": ["BiocFileCache", "BiocNeighbors", "BiocParallel", "ComplexHeatmap", "DT", "GOSemSim", "GeneTonic", "Matrix", "RColorBrewer", "STRINGdb", "bs4Dash", "circlize", "cluster", "dplyr", "fontawesome", "ggdendro", "ggplot2", "igraph", "plotly", "readxl", "rintrojs", "scales", "shiny", "shinyBS", "shinyWidgets", "shinycssloaders", "tm", "visNetwork", "wordcloud2"],
14259 "broken": true
14260 },
14261 "GenVisR": {
14262 "name": "GenVisR",
14263 "version": "1.39.0",
14264 "sha256": "1ax1r53zdjgmgfkj6y9hfd6w19wprpsm6mfbpi168cdskivnpva3",
14265 "depends": ["AnnotationDbi", "BSgenome", "BiocGenerics", "Biostrings", "DBI", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "VariantAnnotation", "biomaRt", "data_table", "ggplot2", "gridExtra", "gtable", "gtools", "plyr", "reshape2", "scales", "viridis"],
14266 "broken": true
14267 },
14268 "GeneAccord": {
14269 "name": "GeneAccord",
14270 "version": "1.15.0",
14271 "sha256": "1dlnqdcrl1fv5yf0zwfgkqfd2x19fv6q84p7c730nmnnaqal6md1",
14272 "depends": ["biomaRt", "caTools", "dplyr", "ggplot2", "ggpubr", "gtools", "magrittr", "maxLik", "RColorBrewer", "reshape2", "tibble"],
14273 "broken": true
14274 },
14275 "GeneAnswers": {
14276 "name": "GeneAnswers",
14277 "version": "2.12.0",
14278 "sha256": "1gacvc1vd0sl6jn0r14w4n37hsrmx6m5k1l7d2a5m3qssyk6l6n3",
14279 "depends": ["Biobase", "Heatplus", "MASS", "RBGL", "RColorBrewer", "RCurl", "RSQLite", "XML", "annotate", "downloader", "igraph"],
14280 "broken": true
14281 },
14282 "GeneGeneInteR": {
14283 "name": "GeneGeneInteR",
14284 "version": "1.33.0",
14285 "sha256": "1wsm0l14mx2qd9gcs6m2n2pn0sgymf79fm8kvxjxvijqjv8n82ca",
14286 "depends": ["FactoMineR", "GenomicRanges", "IRanges", "Rsamtools", "data_table", "igraph", "kernlab", "mvtnorm", "snpStats"],
14287 "broken": true
14288 },
14289 "GeneSelector": {
14290 "name": "GeneSelector",
14291 "version": "2.20.0",
14292 "sha256": "179mjqk9w4zm33mhja7hmwphpnxsv32mh60avs2mqmq9fi9z6pdh",
14293 "depends": ["Biobase", "limma", "multtest", "samr", "siggenes"],
14294 "broken": true
14295 },
14296 "GeneTonic": {
14297 "name": "GeneTonic",
14298 "version": "3.2.0",
14299 "sha256": "1q61akm9sllrjbk3dy2mbvcv0fl10qyqvgvwaz1klixkfwi03hm3",
14300 "depends": ["AnnotationDbi", "ComplexHeatmap", "ComplexUpset", "DESeq2", "DT", "GO_db", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "backbone", "bs4Dash", "circlize", "colorspace", "colourpicker", "dendextend", "dplyr", "dynamicTreeCut", "expm", "ggforce", "ggplot2", "ggrepel", "ggridges", "igraph", "matrixStats", "mosdef", "plotly", "rintrojs", "rlang", "rmarkdown", "scales", "shiny", "shinyAce", "shinyWidgets", "shinycssloaders", "tidyr", "tippy", "viridis", "visNetwork"],
14301 "broken": true
14302 },
14303 "GeneticsDesign": {
14304 "name": "GeneticsDesign",
14305 "version": "1.38.0",
14306 "sha256": "1yh8s40fr0yqbch7ix9y4p22ih0008xpjy5nn5x37y575l41hhwh",
14307 "depends": ["gmodels", "gtools", "mvtnorm"],
14308 "broken": true
14309 },
14310 "GenoGAM": {
14311 "name": "GenoGAM",
14312 "version": "2.11.0",
14313 "sha256": "058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj",
14314 "depends": ["BiocParallel", "Biostrings", "data_table", "DelayedArray", "DESeq2", "futile_logger", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "HDF5Array", "IRanges", "Matrix", "Rcpp", "RcppArmadillo", "rhdf5", "Rsamtools", "S4Vectors", "sparseinv", "SummarizedExperiment"],
14315 "broken": true
14316 },
14317 "GenoView": {
14318 "name": "GenoView",
14319 "version": "1.3.0",
14320 "sha256": "09k9xjmx3qmsfr3a4vrfgs73r0xsymf5m4gl0zjjk4cnfk7bs41v",
14321 "depends": ["GenomicRanges", "biovizBase", "ggbio", "ggplot2", "gridExtra"],
14322 "broken": true
14323 },
14324 "GenomeGraphs": {
14325 "name": "GenomeGraphs",
14326 "version": "1.30.0",
14327 "sha256": "1wkjcg6w95wlrdgaskc3xndl0azmxhxnsipf9qrj057gf2rpx7zf",
14328 "depends": ["biomaRt"],
14329 "broken": true
14330 },
14331 "Genominator": {
14332 "name": "Genominator",
14333 "version": "1.24.0",
14334 "sha256": "1rqzxbji5wh6dshjsprj1mzps08l07gxmjir9naj6lsj2q0xhn9p",
14335 "depends": ["BiocGenerics", "DBI", "GenomeGraphs", "IRanges", "RSQLite"],
14336 "broken": true
14337 },
14338 "GoogleGenomics": {
14339 "name": "GoogleGenomics",
14340 "version": "1.2.0",
14341 "sha256": "1z87jmd5vzg5v93bv9k3998wqhnk5p2v9d2qr9g0xxjvxw2q78fm",
14342 "depends": ["Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "VariantAnnotation", "httr", "rjson"],
14343 "broken": true
14344 },
14345 "GraphPAC": {
14346 "name": "GraphPAC",
14347 "version": "1.12.1",
14348 "sha256": "1fa64jam3cl1khv8jspwjb9myifmgx0kwg0b601bia578bjcdj7d",
14349 "depends": ["RMallow", "TSP", "iPAC", "igraph"],
14350 "broken": true
14351 },
14352 "HCsnip": {
14353 "name": "HCsnip",
14354 "version": "1.10.0",
14355 "sha256": "0x4lpx13bhr2w5yhrcsc89g0x4q1dy0j588h210ziizgh67qqcrs",
14356 "depends": ["Biobase", "clusterRepro", "coin", "fpc", "impute", "randomForestSRC", "sigaR", "sm", "survival"],
14357 "broken": true
14358 },
14359 "HPAStainR": {
14360 "name": "HPAStainR",
14361 "version": "1.9.0",
14362 "sha256": "1bjysi3x8248f262v4rzi2y50rlzryb987wbvdjy6af84nq7hd09",
14363 "depends": ["data_table", "dplyr", "scales", "shiny", "stringr", "tibble", "tidyr"],
14364 "broken": true
14365 },
14366 "HPiP": {
14367 "name": "HPiP",
14368 "version": "1.14.0",
14369 "sha256": "0dbpzacyhwv0080ql3p3gsrmclb5sil9rj3kh2lf7b61qsikh701",
14370 "depends": ["MCL", "PRROC", "caret", "corrplot", "dplyr", "ggplot2", "httr", "igraph", "magrittr", "pROC", "protr", "purrr", "readr", "stringr", "tibble", "tidyr"],
14371 "broken": true
14372 },
14373 "HTSanalyzeR": {
14374 "name": "HTSanalyzeR",
14375 "version": "2.22.0",
14376 "sha256": "01mb273v1i9k0d2gbl9mpmr4rrnx49s3srv0yh1znvmwx0hmfyq2",
14377 "depends": ["AnnotationDbi", "BioNet", "GSEABase", "RankProd", "biomaRt", "cellHTS2", "graph", "igraph"],
14378 "broken": true
14379 },
14380 "HTSeqGenie": {
14381 "name": "HTSeqGenie",
14382 "version": "3.20.1",
14383 "sha256": "0bg86jiv45899gw9x4hhvqf525vfwkzj2b5jk7026cq5vmjc0k5j",
14384 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "Cairo", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "ShortRead", "VariantAnnotation", "VariantTools", "chipseq", "gmapR", "hwriter", "rtracklayer"],
14385 "broken": true
14386 },
14387 "Harshlight": {
14388 "name": "Harshlight",
14389 "version": "1.79.0",
14390 "sha256": "1jm0ia06ls1m7dsbzp1hk68qi5wbqzhcf6x66534bj1kxdll17k7",
14391 "depends": ["Biobase", "affy", "altcdfenvs"],
14392 "broken": true
14393 },
14394 "HiCool": {
14395 "name": "HiCool",
14396 "version": "1.8.0",
14397 "sha256": "0cnzbi4if3cn0lr78yh4a76kn3pv8c332w69s3l9gsqxvjx16kqs",
14398 "depends": ["BiocIO", "GenomicRanges", "HiCExperiment", "IRanges", "InteractionSet", "S4Vectors", "basilisk", "dplyr", "plotly", "reticulate", "rmarkdown", "rmdformats", "sessioninfo", "stringr", "vroom"],
14399 "broken": true
14400 },
14401 "HumanTranscriptomeCompendium": {
14402 "name": "HumanTranscriptomeCompendium",
14403 "version": "1.20.0",
14404 "sha256": "1y46zsl08k6sdih8psar85fyc5dfk2vraxmfry70zx57vbjbin92",
14405 "depends": ["BiocManager", "S4Vectors", "SummarizedExperiment", "shiny", "ssrch"],
14406 "broken": true
14407 },
14408 "IMAS": {
14409 "name": "IMAS",
14410 "version": "1.32.0",
14411 "sha256": "1b1vy4mdnna15ckmh6n5jqz4bkyq4izm5zij71brg3b21214c0ja",
14412 "depends": ["AnnotationDbi", "BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "IVAS", "Matrix", "Rsamtools", "S4Vectors", "doParallel", "foreach", "ggfortify", "ggplot2", "gridExtra", "lattice", "lme4", "survival"],
14413 "broken": true
14414 },
14415 "IPPD": {
14416 "name": "IPPD",
14417 "version": "1.18.0",
14418 "sha256": "1kl4rx6rdmpkm7bd2w8ncvz4sb8x6wljvxkif2l17yflsp1wjvp2",
14419 "depends": ["MASS", "Matrix", "XML", "bitops", "digest"],
14420 "broken": true
14421 },
14422 "IRISFGM": {
14423 "name": "IRISFGM",
14424 "version": "1.8.0",
14425 "sha256": "1n13rsbg5y0xnr6in18silifx8jhqzjj1vb5kpjgy5ml55im1s5r",
14426 "depends": ["AdaptGauss", "AnnotationDbi", "anocva", "clusterProfiler", "colorspace", "DEsingle", "DrImpute", "ggplot2", "ggpubr", "ggraph", "igraph", "knitr", "Matrix", "MCL", "mixtools", "org_Hs_eg_db", "org_Mm_eg_db", "pheatmap", "Polychrome", "RColorBrewer", "Rcpp", "scater", "scran", "Seurat", "SingleCellExperiment"],
14427 "broken": true
14428 },
14429 "IdMappingAnalysis": {
14430 "name": "IdMappingAnalysis",
14431 "version": "1.14.0",
14432 "sha256": "11rn1b6665b64h3a4mb8qkg5kp5l9ha6aa14f512k7lzs1vcczpm",
14433 "depends": ["Biobase", "RColorBrewer", "R_oo", "boot", "mclust", "rChoiceDialogs"],
14434 "broken": true
14435 },
14436 "IdMappingRetrieval": {
14437 "name": "IdMappingRetrieval",
14438 "version": "1.18.2",
14439 "sha256": "0wl2ybv23z84rlq2szk46kvcdm0bmqy0mjga9n33wz1c04br2bxj",
14440 "depends": ["AffyCompatible", "ENVISIONQuery", "RCurl", "R_methodsS3", "R_oo", "XML", "biomaRt", "rChoiceDialogs"],
14441 "broken": true
14442 },
14443 "Imetagene": {
14444 "name": "Imetagene",
14445 "version": "1.0.0",
14446 "sha256": "1di9nx5ad0wd17byn740azx9yb6hd12dzvlfl8s5iyas4z9qzwya",
14447 "depends": ["ggplot2", "metagene", "shiny", "shinyBS", "shinyFiles", "shinythemes"],
14448 "broken": true
14449 },
14450 "ImmuneSpaceR": {
14451 "name": "ImmuneSpaceR",
14452 "version": "1.30.0",
14453 "sha256": "0lhilrh4xyw1cvqnx4b6g0llm9b1i4l2r476d4hmypkkgl25q8n7",
14454 "depends": ["Biobase", "curl", "data_table", "digest", "flowCore", "flowWorkspace", "ggplot2", "gplots", "heatmaply", "httr", "jsonlite", "pheatmap", "plotly", "preprocessCore", "R6", "Rlabkey", "rmarkdown", "scales"],
14455 "broken": true
14456 },
14457 "IntOMICS": {
14458 "name": "IntOMICS",
14459 "version": "1.2.0",
14460 "sha256": "1qhni8p8zap9szi499jrdxkacdrb7vdd4va5h4n0kdi4qr80vrzh",
14461 "depends": ["bestNormalize", "bnlearn", "bnstruct", "cowplot", "ggplot2", "ggraph", "gplots", "igraph", "matrixStats", "numbers", "RColorBrewer", "rlang", "SummarizedExperiment"],
14462 "broken": true
14463 },
14464 "InterMineR": {
14465 "name": "InterMineR",
14466 "version": "1.26.0",
14467 "sha256": "0isw4rg89139xmrcfb9r7jc3z8jj1my4radhinah0vad2cwb36l0",
14468 "depends": ["Biostrings", "GenomicRanges", "IRanges", "RCurl", "RJSONIO", "S4Vectors", "SummarizedExperiment", "XML", "httr", "igraph", "sqldf", "xml2"],
14469 "broken": true
14470 },
14471 "IsoGeneGUI": {
14472 "name": "IsoGeneGUI",
14473 "version": "2.6.0",
14474 "sha256": "1b7my9ri3kwi4rbdymcnwdjzv88pgdfjf2ax4gls0v4460hwg5az",
14475 "depends": ["Biobase", "Iso", "ORCME", "ORIClust", "RColorBrewer", "Rcpp", "ff", "geneplotter", "goric", "jpeg", "multtest", "relimp", "tkrplot", "xlsx"],
14476 "broken": true
14477 },
14478 "KEGGprofile": {
14479 "name": "KEGGprofile",
14480 "version": "1.12.0",
14481 "sha256": "08yg0vn7d0yyamwj8s9bg9130y1dag34w5j9dhi00x7381jnrxwr",
14482 "depends": ["AnnotationDbi", "KEGGREST", "KEGG_db", "TeachingDemos", "XML", "biomaRt", "png"],
14483 "broken": true
14484 },
14485 "LMGene": {
14486 "name": "LMGene",
14487 "version": "2.26.0",
14488 "sha256": "0mfs8kpirwkv8salg6aacy0hr0zwmmxr7pzh88sxj3x71k2dclzi",
14489 "depends": ["Biobase", "affy", "multtest", "survival"],
14490 "broken": true
14491 },
14492 "LPEadj": {
14493 "name": "LPEadj",
14494 "version": "1.30.0",
14495 "sha256": "0ll9n3wkaink16laj2y98hb0kx5dglz776zlwdfkw54l1fjvvj5h",
14496 "depends": ["LPE"],
14497 "broken": true
14498 },
14499 "LVSmiRNA": {
14500 "name": "LVSmiRNA",
14501 "version": "1.20.0",
14502 "sha256": "1q43harvk7q5wb8yjffhvzs4dxl8h5vp60ngym5vcvapxr8iym3w",
14503 "depends": ["Biobase", "BiocGenerics", "MASS", "SparseM", "affy", "limma", "quantreg", "vsn", "zlibbioc"],
14504 "broken": true
14505 },
14506 "LinTInd": {
14507 "name": "LinTInd",
14508 "version": "1.12.0",
14509 "sha256": "0hk602dvj93j3nqplm8nrxy51xl59ynplif63w5scbvngnvhlc9y",
14510 "depends": ["BiocGenerics", "Biostrings", "IRanges", "S4Vectors", "ape", "cowplot", "data_tree", "dplyr", "ggnewscale", "ggplot2", "ggtree", "networkD3", "pheatmap", "purrr", "pwalign", "reshape2", "rlist", "stringdist", "stringr"],
14511 "broken": true
14512 },
14513 "LineagePulse": {
14514 "name": "LineagePulse",
14515 "version": "1.21.0",
14516 "sha256": "09x1i7slysqf3dpjzck6rgfzhyswaj0kk8i047yscg8fcaksbmqg",
14517 "depends": ["BiocParallel", "circlize", "ComplexHeatmap", "ggplot2", "gplots", "knitr", "Matrix", "RColorBrewer", "SingleCellExperiment", "SummarizedExperiment"],
14518 "broken": true
14519 },
14520 "LowMACA": {
14521 "name": "LowMACA",
14522 "version": "1.2.0",
14523 "sha256": "12jm8psg7rnrsxydcqzfgiryy6lk5mxyximfzn7hnqqvxbs3wc55",
14524 "depends": ["BiocParallel", "Biostrings", "LowMACAAnnotation", "RColorBrewer", "data_table", "motifStack", "reshape2", "stringr"],
14525 "broken": true
14526 },
14527 "M3D": {
14528 "name": "M3D",
14529 "version": "1.4.0",
14530 "sha256": "088ghd9r5jr51179cj9hbk1dpj4f9fkrbgyghlq29w2bbgzc57xx",
14531 "depends": ["BiSeq", "GenomicRanges", "IRanges"],
14532 "broken": true
14533 },
14534 "MACPET": {
14535 "name": "MACPET",
14536 "version": "1.15.1",
14537 "sha256": "0742i3fxg2793lhgpxb4whh6mwvzd4bn86ykd0rv8sgilxyq5zsl",
14538 "depends": ["BH", "bigmemory", "BiocParallel", "Biostrings", "futile_logger", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "GEOquery", "gtools", "InteractionSet", "intervals", "IRanges", "knitr", "plyr", "Rbowtie", "Rcpp", "Rsamtools", "rtracklayer", "S4Vectors", "ShortRead"],
14539 "broken": true
14540 },
14541 "MADSEQ": {
14542 "name": "MADSEQ",
14543 "version": "1.34.0",
14544 "sha256": "1fir4xvhg9n33wzq0s5191k9z1ywj02g8khz1337hp137i2vn6jy",
14545 "depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "SummarizedExperiment", "VGAM", "VariantAnnotation", "coda", "preprocessCore", "rjags", "rtracklayer", "vcfR", "zlibbioc"],
14546 "broken": true
14547 },
14548 "MAGeCKFlute": {
14549 "name": "MAGeCKFlute",
14550 "version": "2.9.0",
14551 "sha256": "1m2yq73q9wwv5kfybgnkdb877dy539x9vpx713pr6xjpkqvksfiv",
14552 "depends": ["Biobase", "DOSE", "clusterProfiler", "depmap", "enrichplot", "ggplot2", "ggrepel", "gridExtra", "msigdbr", "pathview", "reshape2"],
14553 "broken": true
14554 },
14555 "MCRestimate": {
14556 "name": "MCRestimate",
14557 "version": "2.26.0",
14558 "sha256": "1igfffsgz6m4rl2a5fnkb92r5x4qjr2yl8gaj3ws8478q3aq0bgd",
14559 "depends": ["Biobase", "RColorBrewer", "e1071", "golubEsets", "pamr", "randomForest"],
14560 "broken": true
14561 },
14562 "MGFR": {
14563 "name": "MGFR",
14564 "version": "1.34.0",
14565 "sha256": "02d2m9yj5yq66b638jrwavpy2fsl41chh3gb13b4k0sca120bbxb",
14566 "depends": ["annotate", "biomaRt"],
14567 "broken": true
14568 },
14569 "MIGSA": {
14570 "name": "MIGSA",
14571 "version": "1.21.0",
14572 "sha256": "0b7w9lzi8xb1vzh7zahw7wh9jm7x1y04rs2gvvjmfbdfw085rdpm",
14573 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocParallel", "data_table", "edgeR", "futile_logger", "ggdendro", "ggplot2", "GO_db", "GOstats", "graph", "GSEABase", "ismev", "jsonlite", "limma", "matrixStats", "org_Hs_eg_db", "RBGL", "reshape2", "Rgraphviz", "vegan"],
14574 "broken": true
14575 },
14576 "MIMOSA": {
14577 "name": "MIMOSA",
14578 "version": "1.8.1",
14579 "sha256": "1mkxp83gwxw581gz13vb8lbl2pff7al75lhjcvwxv6gxb1k272xi",
14580 "depends": ["Biobase", "Formula", "MASS", "MCMCpack", "Rcpp", "RcppArmadillo", "coda", "data_table", "ggplot2", "modeest", "plyr", "pracma", "reshape", "scales", "testthat"],
14581 "broken": true
14582 },
14583 "MMAPPR2": {
14584 "name": "MMAPPR2",
14585 "version": "1.14.0",
14586 "sha256": "14m41hi79f7m2qigjjcgy08awrf0654ridgm6wxcq8cmmlm68g8a",
14587 "depends": ["Biobase", "BiocGenerics", "BiocParallel", "data_table", "dplyr", "ensemblVEP", "GenomeInfoDb", "GenomicRanges", "gmapR", "IRanges", "magrittr", "Rsamtools", "S4Vectors", "stringr", "tidyr", "VariantAnnotation", "VariantTools"],
14588 "broken": true
14589 },
14590 "MMDiff": {
14591 "name": "MMDiff",
14592 "version": "1.10.0",
14593 "sha256": "0v000a87ciw83xj6p2443k1zs1w98ax38nzaf643wqmb8szwr6vf",
14594 "depends": ["Biobase", "DiffBind", "GenomicRanges", "IRanges", "Rsamtools"],
14595 "broken": true
14596 },
14597 "MMUPHin": {
14598 "name": "MMUPHin",
14599 "version": "1.22.0",
14600 "sha256": "0d8i9b6pjwz409jd46fm1n9h21hzg8zgzpvchywpyc1k896fvz4l",
14601 "depends": ["Maaslin2", "cowplot", "dplyr", "fpc", "ggplot2", "igraph", "metafor", "stringr", "tidyr"],
14602 "broken": true
14603 },
14604 "MQmetrics": {
14605 "name": "MQmetrics",
14606 "version": "1.10.0",
14607 "sha256": "15jkmdj2k5h8vbi332y7b4xzm2330g2s13l6lf2d1v9pg5aqrisq",
14608 "depends": ["cowplot", "dplyr", "ggforce", "gghalves", "ggplot2", "ggpubr", "ggrepel", "gridExtra", "gtable", "knitr", "magrittr", "plyr", "purrr", "RColorBrewer", "readr", "reshape2", "rlang", "rmarkdown", "scales", "stringr", "tidyr"],
14609 "broken": true
14610 },
14611 "MSEADbi": {
14612 "name": "MSEADbi",
14613 "version": "1.2.0",
14614 "sha256": "1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf",
14615 "depends": ["AnnotationDbi", "Biobase", "DBI", "RSQLite"],
14616 "broken": true
14617 },
14618 "MSGFgui": {
14619 "name": "MSGFgui",
14620 "version": "1.4.0",
14621 "sha256": "0pb9i81pqnz05jrwqh9myz5zchdn8ng5nrsv3cmdg4713yskqpcw",
14622 "depends": ["MSGFplus", "mzID", "mzR", "shiny", "shinyFiles", "xlsx"],
14623 "broken": true
14624 },
14625 "MSGFplus": {
14626 "name": "MSGFplus",
14627 "version": "1.4.0",
14628 "sha256": "1hw40kyhkxm0iy60n3y1cw2k52q5vjl47k4z5x34syq5d14iplva",
14629 "depends": ["mzID"],
14630 "broken": true
14631 },
14632 "MSstatsSampleSize": {
14633 "name": "MSstatsSampleSize",
14634 "version": "1.13.0",
14635 "sha256": "09gmlqxb65pa4wxh5bryb6lhs68zrfaqfl7n3k9shvzi3iw02vp3",
14636 "depends": ["BiocParallel", "caret", "ggplot2", "gridExtra", "MSstats", "reshape2"],
14637 "broken": true
14638 },
14639 "MSstatsTMTPTM": {
14640 "name": "MSstatsTMTPTM",
14641 "version": "1.1.2",
14642 "sha256": "16qnddwhwhjjfr5akdrmp93gkxq2r41s82hb1blbz47lwbj5kaj5",
14643 "depends": ["dplyr", "ggplot2", "gridExtra", "MSstatsTMT", "Rcpp", "reshape2", "stringr"],
14644 "broken": true
14645 },
14646 "Maaslin2": {
14647 "name": "Maaslin2",
14648 "version": "1.22.0",
14649 "sha256": "10hdjhi1ykk513hzvs0bi6avzghqmkqns8knhz3ycv7bj3ynp70x",
14650 "depends": ["MASS", "biglm", "car", "chemometrics", "cplm", "data_table", "dplyr", "edgeR", "ggplot2", "glmmTMB", "hash", "lme4", "lmerTest", "logging", "metagenomeSeq", "optparse", "pbapply", "pcaPP", "pheatmap", "pscl", "robustbase", "tibble", "vegan"],
14651 "broken": true
14652 },
14653 "Macarron": {
14654 "name": "Macarron",
14655 "version": "1.12.2",
14656 "sha256": "1gmpw9lf39hdvaqfwqkr3vbq32g5ik8i48njdfmq2f42kdmdpxy6",
14657 "depends": ["BiocParallel", "DelayedArray", "Maaslin2", "RJSONIO", "SummarizedExperiment", "WGCNA", "data_table", "dynamicTreeCut", "ff", "httr", "logging", "plyr", "psych", "xml2"],
14658 "broken": true
14659 },
14660 "MeSHSim": {
14661 "name": "MeSHSim",
14662 "version": "1.2.0",
14663 "sha256": "1wgc2s1080sm2dn9ny4c1kpbcmbv4gv91h7jmgya9p8lk224aasr",
14664 "depends": ["RCurl", "XML"],
14665 "broken": true
14666 },
14667 "Melissa": {
14668 "name": "Melissa",
14669 "version": "1.24.0",
14670 "sha256": "0y80p2jp4i7wsgqilaz1xkp573z97zxx0gwc7bg6d78bqsych11b",
14671 "depends": ["BPRMeth", "BiocStyle", "GenomicRanges", "MCMCpack", "ROCR", "assertthat", "cowplot", "data_table", "doParallel", "foreach", "ggplot2", "magrittr", "matrixcalc", "mclust", "mvtnorm", "truncnorm"],
14672 "broken": true
14673 },
14674 "MergeMaid": {
14675 "name": "MergeMaid",
14676 "version": "2.42.0",
14677 "sha256": "1ajmrcpvzfjk0bkm2v3yklry91w5cxpjhgjr9hfszzldfhh5sfw4",
14678 "depends": ["Biobase", "MASS", "survival"],
14679 "broken": true
14680 },
14681 "MetMashR": {
14682 "name": "MetMashR",
14683 "version": "1.2.0",
14684 "sha256": "1505j1jvmgnrxpbpkyh6am0baqmy312sc0fkg1dgzimq6pmwm170",
14685 "depends": ["cowplot", "dplyr", "ggplot2", "ggthemes", "httr", "rlang", "scales", "struct"],
14686 "broken": true
14687 },
14688 "MetaVolcanoR": {
14689 "name": "MetaVolcanoR",
14690 "version": "1.14.0",
14691 "sha256": "11fxjv0kb65wc2237rh3340j72v3zsd4s019bi07rbpqnl246pnj",
14692 "depends": ["cowplot", "data_table", "dplyr", "ggplot2", "htmlwidgets", "metafor", "metap", "plotly", "rlang", "tidyr", "topconfects"],
14693 "broken": true
14694 },
14695 "Metab": {
14696 "name": "Metab",
14697 "version": "1.4.1",
14698 "sha256": "0wi45k7lx7f7y8bfpa4d1lggnkxlwwyjgzw22xyfw9yj40ma5x9g",
14699 "depends": ["pander", "svDialogs", "xcms"],
14700 "broken": true
14701 },
14702 "MethCP": {
14703 "name": "MethCP",
14704 "version": "1.11.0",
14705 "sha256": "099jaadjfalvxpwq3k630yrqa1dfbp8rqn2fahz1rsha3y5z9bys",
14706 "depends": ["BiocParallel", "bsseq", "DNAcopy", "DSS", "GenomeInfoDb", "GenomicRanges", "IRanges", "methylKit", "S4Vectors"],
14707 "broken": true
14708 },
14709 "Mirsynergy": {
14710 "name": "Mirsynergy",
14711 "version": "1.6.0",
14712 "sha256": "0wb257fi5wygky6iqaxdhp8n3pxzknv1vy44ay55y0bal1nbkzwa",
14713 "depends": ["Matrix", "RColorBrewer", "ggplot2", "gridExtra", "igraph", "reshape", "scales"],
14714 "broken": true
14715 },
14716 "MmPalateMiRNA": {
14717 "name": "MmPalateMiRNA",
14718 "version": "1.20.0",
14719 "sha256": "1salsb4askcv6xgzfwcwxkrr8qx7pjzqgljbw3ips2f4n6vqvyzj",
14720 "depends": ["Biobase", "lattice", "limma", "statmod", "vsn", "xtable"],
14721 "broken": true
14722 },
14723 "MoPS": {
14724 "name": "MoPS",
14725 "version": "1.4.0",
14726 "sha256": "07bylvhv1wnzj3z2ycw4rb29mlz34sbpksl0sdk47q9f5cjgvlnf",
14727 "depends": ["Biobase"],
14728 "broken": true
14729 },
14730 "MobilityTransformR": {
14731 "name": "MobilityTransformR",
14732 "version": "1.6.0",
14733 "sha256": "1292fk08zi1zf0hdj56vzdgv9h9nr16vmbzypqkam7lvqqnig49h",
14734 "depends": ["MetaboCoreUtils", "MSnbase", "Spectra", "xcms"],
14735 "broken": true
14736 },
14737 "MotIV": {
14738 "name": "MotIV",
14739 "version": "1.26.0",
14740 "sha256": "0s26dklw8kav8lz0245as7y9znj4yfiknpmcgrdmm62rq04c11mp",
14741 "depends": ["BiocGenerics", "Biostrings", "IRanges", "S4Vectors", "lattice", "rGADEM"],
14742 "broken": true
14743 },
14744 "NBSplice": {
14745 "name": "NBSplice",
14746 "version": "1.15.0",
14747 "sha256": "0yn7s7igshall34cflmdwvmknv8h1zdi6vg8svvcyn9fvzlgjdm8",
14748 "depends": ["BiocParallel", "car", "edgeR", "ggplot2", "MASS", "reshape2"],
14749 "broken": true
14750 },
14751 "NGScopy": {
14752 "name": "NGScopy",
14753 "version": "1.4.0",
14754 "sha256": "1vs7mi0lb8jcm9yc0jz7rvdnj95fr06cf1jkb9p84pnm9vpn63d6",
14755 "depends": ["changepoint"],
14756 "broken": true
14757 },
14758 "NanoStringQCPro": {
14759 "name": "NanoStringQCPro",
14760 "version": "1.2.0",
14761 "sha256": "1cbja0bi4sw3n4f1wkgbvmwh1hr49hhrybqxc6a7f8lvq11s28rf",
14762 "depends": ["AnnotationDbi", "Biobase", "NMF", "RColorBrewer", "knitr", "org_Hs_eg_db", "png"],
14763 "broken": true
14764 },
14765 "NarrowPeaks": {
14766 "name": "NarrowPeaks",
14767 "version": "1.14.0",
14768 "sha256": "08nhw2ira3amjs9zl134afjqwi0hniq0g3mgmljjp1l0277b8acg",
14769 "depends": ["BiocGenerics", "CSAR", "GenomeInfoDb", "GenomicRanges", "ICSNP", "IRanges", "S4Vectors", "fda"],
14770 "broken": true
14771 },
14772 "NeighborNet": {
14773 "name": "NeighborNet",
14774 "version": "1.18.0",
14775 "sha256": "046k1799wz77ww4jhf935pfz2637dmzy7p848iyjxj1yc5g51jq8",
14776 "depends": ["graph"],
14777 "broken": true
14778 },
14779 "NeuCA": {
14780 "name": "NeuCA",
14781 "version": "1.10.0",
14782 "sha256": "0k5bqdrja3x238fyrd7dm5jm94igh25b0ipb2zj6scpa4m15n67l",
14783 "depends": ["SingleCellExperiment", "e1071", "kableExtra", "keras", "limma"],
14784 "broken": true
14785 },
14786 "NxtIRFcore": {
14787 "name": "NxtIRFcore",
14788 "version": "1.6.0",
14789 "sha256": "1x3645v6ar8mpmyk6hd5w3m38496g68l2vdh80vh0hhlqlrp17n2",
14790 "depends": ["AnnotationHub", "BiocFileCache", "BiocGenerics", "BiocParallel", "Biostrings", "BSgenome", "data_table", "DelayedArray", "DelayedMatrixStats", "fst", "genefilter", "GenomeInfoDb", "GenomicRanges", "ggplot2", "HDF5Array", "IRanges", "magrittr", "NxtIRFdata", "plotly", "R_utils", "Rcpp", "RcppProgress", "rhdf5", "rtracklayer", "S4Vectors", "SummarizedExperiment", "zlibbioc"],
14791 "broken": true
14792 },
14793 "ODER": {
14794 "name": "ODER",
14795 "version": "1.6.0",
14796 "sha256": "17c3hvdghli6i88yqy6dclzyad60s0d6y4hng6i4bycc9fnan41w",
14797 "depends": ["BiocFileCache", "BiocGenerics", "dasper", "data_table", "derfinder", "dplyr", "GenomeInfoDb", "GenomicRanges", "ggplot2", "ggpubr", "ggrepel", "IRanges", "magrittr", "megadepth", "plyr", "purrr", "rtracklayer", "S4Vectors", "stringr", "tibble"],
14798 "broken": true
14799 },
14800 "OGSA": {
14801 "name": "OGSA",
14802 "version": "1.0.0",
14803 "sha256": "058lfd60w905jvhq99dsdcvl1q6h9dnwhqdqn942yr54jlkc7fjy",
14804 "depends": ["Biobase", "gplots", "limma"],
14805 "broken": true
14806 },
14807 "OmicsLonDA": {
14808 "name": "OmicsLonDA",
14809 "version": "1.15.0",
14810 "sha256": "1kn26k0lnk7hgfzk1kh5bh41zkia8a4pzsfr35mbjrflcxmvgk2w",
14811 "depends": ["BiocGenerics", "BiocParallel", "ggplot2", "gss", "plyr", "pracma", "SummarizedExperiment", "zoo"],
14812 "broken": true
14813 },
14814 "OmicsMLRepoR": {
14815 "name": "OmicsMLRepoR",
14816 "version": "1.2.0",
14817 "sha256": "0cfa80zylasvi7qbjiwsavl0yfn9ahji2sgzkfmi1lsbryppgyvc",
14818 "depends": ["BiocFileCache", "DiagrammeR", "data_tree", "dplyr", "jsonlite", "lubridate", "plyr", "readr", "rlang", "rols", "stringr", "tibble", "tidyr"],
14819 "broken": true
14820 },
14821 "OmicsMarkeR": {
14822 "name": "OmicsMarkeR",
14823 "version": "1.2.0",
14824 "sha256": "1r4qn2p5fxyi6r9l7zgbga1n5wcy18whcvyx0cwrr7lawbzjn6yg",
14825 "depends": ["caTools", "caret", "data_table", "e1071", "foreach", "gbm", "glmnet", "pamr", "permute", "plyr", "randomForest"],
14826 "broken": true
14827 },
14828 "OmnipathR": {
14829 "name": "OmnipathR",
14830 "version": "3.16.0",
14831 "sha256": "0l5zbb05f4rgykmppwfsdah1f6601zqq67jsd5y1ck76sl2hq4gc",
14832 "depends": ["RSQLite", "R_utils", "XML", "checkmate", "crayon", "curl", "digest", "dplyr", "fs", "httr2", "igraph", "jsonlite", "later", "logger", "lubridate", "magrittr", "progress", "purrr", "rappdirs", "readr", "readxl", "rlang", "rmarkdown", "rvest", "sessioninfo", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "vctrs", "withr", "xml2", "yaml", "zip"],
14833 "broken": true
14834 },
14835 "OperaMate": {
14836 "name": "OperaMate",
14837 "version": "1.2.3",
14838 "sha256": "1zgqf2ywazrxc66l2x8280izrzanan51b8vz5jwy8i7gnrm4gaa0",
14839 "depends": ["fBasics", "gProfileR", "ggplot2", "gridExtra", "pheatmap", "reshape2", "stabledist"],
14840 "broken": true
14841 },
14842 "OutlierD": {
14843 "name": "OutlierD",
14844 "version": "1.34.0",
14845 "sha256": "19wrakxv833r5jqcrk627kgn6pissna9xdfnhn389a0j50xb02is",
14846 "depends": ["Biobase", "quantreg"],
14847 "broken": true
14848 },
14849 "PAPi": {
14850 "name": "PAPi",
14851 "version": "1.10.0",
14852 "sha256": "0q90yi4s3jln713cpylgan7fzw7c536kw7bqlnkkaw6rjj1k6vvg",
14853 "depends": ["KEGGREST", "svDialogs"],
14854 "broken": true
14855 },
14856 "PAnnBuilder": {
14857 "name": "PAnnBuilder",
14858 "version": "1.34.0",
14859 "sha256": "086hgqx9svn1pfzcz6affj2p9kvjk5k4viqkmwknlk9smw53l40l",
14860 "depends": ["AnnotationDbi", "Biobase", "DBI", "RSQLite"],
14861 "broken": true
14862 },
14863 "PCAtools": {
14864 "name": "PCAtools",
14865 "version": "2.20.0",
14866 "sha256": "0jik25f4rpmr8gjy22i2myjhgsgqgslfjfskhv5bgkmqwbn931ar",
14867 "depends": ["BH", "BiocParallel", "BiocSingular", "DelayedArray", "DelayedMatrixStats", "Matrix", "Rcpp", "beachmat", "cowplot", "dqrng", "ggplot2", "ggrepel", "lattice", "reshape2"],
14868 "broken": true
14869 },
14870 "PCpheno": {
14871 "name": "PCpheno",
14872 "version": "1.32.0",
14873 "sha256": "023dkbi3r1bs9wiihx3rcdc1dx5w21pfmk0n3n7zan4k5jkz4rwx",
14874 "depends": ["AnnotationDbi", "Biobase", "Category", "GO_db", "GSEABase", "KEGG_db", "SLGI", "ScISI", "annotate", "graph", "ppiData", "ppiStats"],
14875 "broken": true
14876 },
14877 "PERFect": {
14878 "name": "PERFect",
14879 "version": "1.14.0",
14880 "sha256": "0ygbirfnp122c8jzrig5cnm6rxyhz126ixl5ca49i13kizcv2ns9",
14881 "depends": ["fitdistrplus", "ggplot2", "Matrix", "phyloseq", "psych", "sn", "zoo"],
14882 "broken": true
14883 },
14884 "PFP": {
14885 "name": "PFP",
14886 "version": "1.7.0",
14887 "sha256": "1328a73ggg7l1drjbmv67jcvlv83khn1k252mf81xj4gf213d0di",
14888 "depends": ["clusterProfiler", "ggplot2", "graph", "igraph", "KEGGgraph", "magrittr", "plyr", "tidyr"],
14889 "broken": true
14890 },
14891 "PGA": {
14892 "name": "PGA",
14893 "version": "1.0.0",
14894 "sha256": "1s4ddjlnxh1waw1sm428lnaq655qfzlmabcjgdm95fi2cg66vs86",
14895 "depends": ["AnnotationDbi", "Biostrings", "GenomicFeatures", "GenomicRanges", "IRanges", "Nozzle_R1", "RCurl", "RSQLite", "Rsamtools", "VariantAnnotation", "biomaRt", "customProDB", "data_table", "ggplot2", "pheatmap", "rTANDEM", "rtracklayer", "stringr"],
14896 "broken": true
14897 },
14898 "PGSEA": {
14899 "name": "PGSEA",
14900 "version": "1.44.0",
14901 "sha256": "0cfz479nlmbal4bs5ah12q6jpp7989xic59rml87i19bcbhz8z26",
14902 "depends": ["AnnotationDbi", "Biobase", "GO_db", "KEGG_db", "annaffy"],
14903 "broken": true
14904 },
14905 "PICS": {
14906 "name": "PICS",
14907 "version": "2.51.0",
14908 "sha256": "1fchi92ka52902c4prscm85acw8f7sjihz2nx8lrc0qz421msdv7",
14909 "depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools"],
14910 "broken": true
14911 },
14912 "PING": {
14913 "name": "PING",
14914 "version": "2.51.0",
14915 "sha256": "1fhw93llsslbn13679iph91klzpaqzi953zbxl4n9c9r2sbngsc9",
14916 "depends": ["BSgenome", "BiocGenerics", "GenomicRanges", "Gviz", "IRanges", "PICS", "S4Vectors", "fda"],
14917 "broken": true
14918 },
14919 "PSEA": {
14920 "name": "PSEA",
14921 "version": "1.4.0",
14922 "sha256": "1df2v472s2g4qcylvg9y5gahgjzq0m753j65736c8lc7g2zbpacp",
14923 "depends": ["Biobase", "MASS"],
14924 "broken": true
14925 },
14926 "PSICQUIC": {
14927 "name": "PSICQUIC",
14928 "version": "1.8.3",
14929 "sha256": "1g3xkbgr3by0gd8ngiavxyy14ixdhrwcf5ka329k3129d816425p",
14930 "depends": ["BiocGenerics", "IRanges", "RCurl", "biomaRt", "httr", "plyr"],
14931 "broken": true
14932 },
14933 "PanViz": {
14934 "name": "PanViz",
14935 "version": "1.6.0",
14936 "sha256": "1h4fxqxkaph5j3vkfhmmkhvmqa8czzdzxcg6f06v94hqf38i86i5",
14937 "depends": ["RColorBrewer", "colorspace", "data_table", "dplyr", "easycsv", "futile_logger", "igraph", "magrittr", "rentrez", "rlang", "stringr", "tibble", "tidyr"],
14938 "broken": true
14939 },
14940 "PanVizGenerator": {
14941 "name": "PanVizGenerator",
14942 "version": "1.22.0",
14943 "sha256": "0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d",
14944 "depends": ["igraph", "jsonlite", "pcaMethods", "shiny"],
14945 "broken": true
14946 },
14947 "Pbase": {
14948 "name": "Pbase",
14949 "version": "0.10.0",
14950 "sha256": "02b2vw63gwssy6bz8v6dvfmz2ak5pa7wzz341nrbr3mwv0k27j4q",
14951 "depends": ["Biobase", "BiocGenerics", "Biostrings", "GenomicRanges", "Gviz", "IRanges", "MSnbase", "Pviz", "Rcpp", "S4Vectors", "biomaRt", "cleaver", "mzID", "mzR", "rtracklayer"],
14952 "broken": true
14953 },
14954 "PhenStat": {
14955 "name": "PhenStat",
14956 "version": "2.44.0",
14957 "sha256": "0gzhfy6mz3dazwy9hcb8ffgsfry6r4byl2a8b9qkir8ymv3q6s2p",
14958 "depends": ["MASS", "car", "corrplot", "ggplot2", "graph", "knitr", "lme4", "logistf", "msgps", "nlme", "nortest", "pingr", "reshape"],
14959 "broken": true
14960 },
14961 "Pi": {
14962 "name": "Pi",
14963 "version": "2.14.0",
14964 "sha256": "16jh7p3f6nk2hwvp44b9sas1dl618m520xj553x9dkaj77jmzp6d",
14965 "depends": ["BiocGenerics", "caret", "dplyr", "GenomeInfoDb", "GenomicRanges", "ggnetwork", "ggplot2", "ggrepel", "glmnet", "igraph", "IRanges", "lattice", "MASS", "Matrix", "osfr", "plot3D", "purrr", "randomForest", "RCircos", "readr", "ROCR", "scales", "supraHex", "tibble", "tidyr"],
14966 "broken": true
14967 },
14968 "Pigengene": {
14969 "name": "Pigengene",
14970 "version": "1.34.0",
14971 "sha256": "02f1p69ci15r3l52g3fxvb4mfn4ldpl3vkh9710ynfdbn67dg0r9",
14972 "depends": ["BiocStyle", "C50", "DBI", "DOSE", "GO_db", "MASS", "ReactomePA", "Rgraphviz", "WGCNA", "bnlearn", "clusterProfiler", "dplyr", "gdata", "ggplot2", "graph", "impute", "matrixStats", "openxlsx", "partykit", "pheatmap", "preprocessCore"],
14973 "broken": true
14974 },
14975 "Pirat": {
14976 "name": "Pirat",
14977 "version": "1.2.0",
14978 "sha256": "0wky524d2j1qw80rwr8v211bqfkrdn4zfp5v2j8d24p9x3f9iyj6",
14979 "depends": ["MASS", "S4Vectors", "SummarizedExperiment", "basilisk", "ggplot2", "invgamma", "progress", "reticulate"],
14980 "broken": true
14981 },
14982 "PloGO2": {
14983 "name": "PloGO2",
14984 "version": "1.14.0",
14985 "sha256": "0r0zf8dfb4pv4hv5fp5v61i3q5bnzwxws1v3cnx7l64b0hjl2ffi",
14986 "depends": ["GO_db", "GOstats", "httr", "lattice", "openxlsx", "xtable"],
14987 "broken": true
14988 },
14989 "PoTRA": {
14990 "name": "PoTRA",
14991 "version": "1.13.0",
14992 "sha256": "1a32d1wndb24pxza3h53yddj9z2clff5srny2k00pbbfq1h99mjf",
14993 "depends": ["BiocGenerics", "graph", "graphite", "igraph", "org_Hs_eg_db"],
14994 "broken": true
14995 },
14996 "Polyfit": {
14997 "name": "Polyfit",
14998 "version": "1.4.0",
14999 "sha256": "0rhs81hclz59nqirpp9y5n7qmg343s260n1gv8ma3c8j2jicb333",
15000 "depends": ["DESeq"],
15001 "broken": true
15002 },
15003 "PrecisionTrialDrawer": {
15004 "name": "PrecisionTrialDrawer",
15005 "version": "1.11.0",
15006 "sha256": "1miw8rj1zn1xv97dkgs66k9g21i6gp3j2m1l1akysskczgam3i2c",
15007 "depends": ["BiocParallel", "biomaRt", "brglm", "data_table", "DT", "GenomicRanges", "ggplot2", "ggrepel", "googleVis", "httr", "IRanges", "jsonlite", "LowMACAAnnotation", "magrittr", "matrixStats", "RColorBrewer", "reshape2", "S4Vectors", "shiny", "shinyBS", "stringr", "XML"],
15008 "broken": true
15009 },
15010 "Prize": {
15011 "name": "Prize",
15012 "version": "1.0.0",
15013 "sha256": "1a9hvhpa29ns7lhzmdqjlasp6rwrzng8klaw9cz54vdvc7al49wn",
15014 "depends": ["diagram", "ggplot2", "gplots", "matrixcalc", "reshape2", "stringr"],
15015 "broken": true
15016 },
15017 "ProCoNA": {
15018 "name": "ProCoNA",
15019 "version": "1.8.0",
15020 "sha256": "0j0ld484cd98304fncyixi86qnxh72m8s83xxyk8c81kf7lzvhw1",
15021 "depends": ["BiocGenerics", "GOstats", "MSnbase", "WGCNA", "flashClust"],
15022 "broken": true
15023 },
15024 "ProteomicsAnnotationHubData": {
15025 "name": "ProteomicsAnnotationHubData",
15026 "version": "1.0.1",
15027 "sha256": "1wxx6mq1xs7l24p82rs0wsmfxhrjx6nv1m7wf73i33vrcy83g2i6",
15028 "depends": ["AnnotationHub", "AnnotationHubData", "Biobase", "BiocInstaller", "Biostrings", "GenomeInfoDb", "MSnbase", "RCurl", "mzR"],
15029 "broken": true
15030 },
15031 "PubScore": {
15032 "name": "PubScore",
15033 "version": "1.8.0",
15034 "sha256": "18bmzvv6mxrdlh297i29q24vi5rc4x2mjaryi5asiki186x0hy8d",
15035 "depends": ["dplyr", "ggplot2", "ggrepel", "igraph", "intergraph", "network", "progress", "rentrez", "sna"],
15036 "broken": true
15037 },
15038 "QUALIFIER": {
15039 "name": "QUALIFIER",
15040 "version": "1.14.1",
15041 "sha256": "1h87y2q8x4ri6sv7nbppzpqa96m99mijq1739h8cfab5wmi0bcl5",
15042 "depends": ["Biobase", "MASS", "XML", "data_table", "flowCore", "flowViz", "flowWorkspace", "hwriter", "lattice", "latticeExtra", "ncdfFlow", "reshape"],
15043 "broken": true
15044 },
15045 "QuartPAC": {
15046 "name": "QuartPAC",
15047 "version": "1.2.0",
15048 "sha256": "0nx3a9jsp2rq61jszm6kgpbqi9m5jkqfvk94npp7nk3qwhfi00j8",
15049 "depends": ["GraphPAC", "SpacePAC", "data_table", "iPAC"],
15050 "broken": true
15051 },
15052 "R453Plus1Toolbox": {
15053 "name": "R453Plus1Toolbox",
15054 "version": "1.58.0",
15055 "sha256": "1jc585yid6s9aw2if073hqi50wgmlr7g4pkdwvgrcsck45g7llfg",
15056 "depends": ["BSgenome", "Biobase", "BiocGenerics", "Biostrings", "GenomicRanges", "IRanges", "R2HTML", "Rsamtools", "S4Vectors", "ShortRead", "SummarizedExperiment", "TeachingDemos", "VariantAnnotation", "XVector", "biomaRt", "pwalign", "xtable"],
15057 "broken": true
15058 },
15059 "RBioinf": {
15060 "name": "RBioinf",
15061 "version": "1.68.0",
15062 "sha256": "1q58rgg9mwnj47r945gpnpgdrp2hpkhfmgrs8w8hrqv718v2dx58",
15063 "depends": ["graph"],
15064 "broken": true
15065 },
15066 "RCytoscape": {
15067 "name": "RCytoscape",
15068 "version": "1.20.1",
15069 "sha256": "1ymbj8xlny9bsbcxyvg9si7v2rlc7bw3sq0424bsfc92l3as0rjj",
15070 "depends": ["BiocGenerics", "graph"],
15071 "broken": true
15072 },
15073 "RDAVIDWebService": {
15074 "name": "RDAVIDWebService",
15075 "version": "1.8.0",
15076 "sha256": "1f92a80zksp90wlj2iymdf20hqkbp1aw7mdb7w5r19zckskcrg1m",
15077 "depends": ["Category", "GO_db", "GOstats", "RBGL", "ggplot2", "graph", "rJava"],
15078 "broken": true
15079 },
15080 "RGMQL": {
15081 "name": "RGMQL",
15082 "version": "1.24.0",
15083 "sha256": "1p7s17i18ql3b8yvg6pmcz62ql18ncd3hqk0rganmahfbd91idby",
15084 "depends": ["BiocGenerics", "GenomicRanges", "RGMQLlib", "S4Vectors", "data_table", "dplyr", "glue", "httr", "plyr", "rJava", "rtracklayer", "xml2"],
15085 "broken": true
15086 },
15087 "RGalaxy": {
15088 "name": "RGalaxy",
15089 "version": "1.14.0",
15090 "sha256": "1g63kmfywmnjammifjkqiy8cnqvb77d2x4yff8bgz2ib60gyqm14",
15091 "depends": ["Biobase", "BiocGenerics", "XML", "digest", "optparse", "roxygen2"],
15092 "broken": true
15093 },
15094 "RIPAT": {
15095 "name": "RIPAT",
15096 "version": "1.10.0",
15097 "sha256": "154a79xyihxkg3sbwxz9ch0ixqlqv9gwkpsv88i55c75qyzkx2sm",
15098 "depends": ["biomaRt", "GenomicRanges", "ggplot2", "IRanges", "karyoploteR", "openxlsx", "plyr", "regioneR", "rtracklayer", "stringr"],
15099 "broken": true
15100 },
15101 "RIPSeeker": {
15102 "name": "RIPSeeker",
15103 "version": "1.10.0",
15104 "sha256": "09pr25pf488vdim3k6mvbvqqyxhl2dfs4y699x8xyhym34c74xcj",
15105 "depends": ["GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "SummarizedExperiment", "rtracklayer"],
15106 "broken": true
15107 },
15108 "RLSeq": {
15109 "name": "RLSeq",
15110 "version": "1.5.2",
15111 "sha256": "0nhip321gbv6phwdwi3qkbmhnfh7fhb9md6xs4lklskwkkrd7s1q",
15112 "depends": ["AnnotationHub", "aws_s3", "callr", "caretEnsemble", "circlize", "ComplexHeatmap", "dplyr", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "ggplot2", "ggplotify", "ggprism", "pheatmap", "RColorBrewer", "regioneR", "rtracklayer", "valr", "VennDiagram"],
15113 "broken": true
15114 },
15115 "RNASeqR": {
15116 "name": "RNASeqR",
15117 "version": "1.16.0",
15118 "sha256": "0m7d3mm644n81630v2m6vv7798x3rjshb9jcp63xq631j1wmk63i",
15119 "depends": ["ballgown", "Biostrings", "clusterProfiler", "corrplot", "DESeq2", "DOSE", "edgeR", "factoextra", "FactoMineR", "ggplot2", "gridExtra", "org_Hs_eg_db", "org_Sc_sgd_db", "pathview", "PerformanceAnalytics", "pheatmap", "rafalib", "reshape2", "reticulate", "Rsamtools", "stringr", "systemPipeR", "systemPipeRdata"],
15120 "broken": true
15121 },
15122 "RNAdecay": {
15123 "name": "RNAdecay",
15124 "version": "1.28.0",
15125 "sha256": "10d1ciz37rxgkbi2hnqqq2cqkwrfflx1gcyjb5gl0zl8076rvy3m",
15126 "depends": ["TMB", "ggplot2", "gplots", "nloptr", "scales"],
15127 "broken": true
15128 },
15129 "RNAinteract": {
15130 "name": "RNAinteract",
15131 "version": "1.18.0",
15132 "sha256": "0v7hz20nsc2dkb4xjzdhib2rj8k9zkn2c71rhg46b6hy3jxrm7m1",
15133 "depends": ["Biobase", "ICS", "ICSNP", "RColorBrewer", "abind", "cellHTS2", "geneplotter", "gplots", "hwriter", "lattice", "latticeExtra", "limma", "locfit", "splots"],
15134 "broken": true
15135 },
15136 "RNAither": {
15137 "name": "RNAither",
15138 "version": "2.18.7",
15139 "sha256": "1mgm6y5ijlw3rpfi0vkdlw0zrfd4ciz3qmmp42vykmm8c5jsjc0x",
15140 "depends": ["RankProd", "biomaRt", "car", "geneplotter", "limma", "prada", "splots", "topGO"],
15141 "broken": true
15142 },
15143 "RNAprobR": {
15144 "name": "RNAprobR",
15145 "version": "1.2.0",
15146 "sha256": "017sc7ba5kw55rc74acv3i5i0mg7h5hblaqxy4j2ln6iqm1h38fi",
15147 "depends": ["BiocGenerics", "Biostrings", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Rsamtools", "plyr", "rtracklayer"],
15148 "broken": true
15149 },
15150 "RWebServices": {
15151 "name": "RWebServices",
15152 "version": "1.34.0",
15153 "sha256": "05czankzfvgsfrs2am8dkglzcix22s7gc4bgci0a66x8z31dlkx0",
15154 "depends": ["RCurl", "SJava", "TypeInfo"],
15155 "broken": true
15156 },
15157 "RamiGO": {
15158 "name": "RamiGO",
15159 "version": "1.16.0",
15160 "sha256": "12mwfcljw323aqpzc4z5hl2h5qy51bpi5z59x4hx8inw3vc3n55y",
15161 "depends": ["RCurl", "RCytoscape", "graph", "gsubfn", "igraph", "png"],
15162 "broken": true
15163 },
15164 "RandomWalkRestartMH": {
15165 "name": "RandomWalkRestartMH",
15166 "version": "1.22.0",
15167 "sha256": "0mvh22p0dliwapdgbl5r93dpjdfnvnxdv5ig3y9gd2ndn32h1cyc",
15168 "depends": ["igraph", "Matrix"],
15169 "broken": true
15170 },
15171 "Rariant": {
15172 "name": "Rariant",
15173 "version": "1.6.2",
15174 "sha256": "1jf8p5i6jqlniwrmsk6ajcrf6j637cx267nvb2742yd1jzfm5yy3",
15175 "depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "SomaticSignatures", "VGAM", "VariantAnnotation", "dplyr", "exomeCopy", "ggbio", "ggplot2", "reshape2", "shiny"],
15176 "broken": true
15177 },
15178 "Rcade": {
15179 "name": "Rcade",
15180 "version": "1.12.0",
15181 "sha256": "08q62agkyb810b0hfvs9vb9rh0ls8zrz83558xprijjizrkg9cg2",
15182 "depends": ["GenomicRanges", "Rsamtools", "S4Vectors", "baySeq", "plotrix", "rgl"],
15183 "broken": true
15184 },
15185 "Rchemcpp": {
15186 "name": "Rchemcpp",
15187 "version": "2.8.0",
15188 "sha256": "0zz9s3zvxgs6mpiq085zy20sqajyx1645cz3848h2l0w1w5m6lga",
15189 "depends": ["ChemmineR", "Rcpp"],
15190 "broken": true
15191 },
15192 "RchyOptimyx": {
15193 "name": "RchyOptimyx",
15194 "version": "2.10.0",
15195 "sha256": "0cmyjyr3dn8df9ss4zhhm6y1lhf68msl5br070x01i8kgh4dagky",
15196 "depends": ["Rgraphviz", "flowType", "graph", "sfsmisc"],
15197 "broken": true
15198 },
15199 "ReQON": {
15200 "name": "ReQON",
15201 "version": "1.16.0",
15202 "sha256": "1j79vmhk34argysbjyxcsmfjsplkxq4cn8gprm6min1v08xzryg0",
15203 "depends": ["Rsamtools", "rJava", "seqbias"],
15204 "broken": true
15205 },
15206 "ReactomeContentService4R": {
15207 "name": "ReactomeContentService4R",
15208 "version": "1.12.0",
15209 "sha256": "1qqrkki9v3ggwqv88n7w3wp50y4gxvkixrg1sad23vl08jd0rkl6",
15210 "depends": ["data_table", "doParallel", "foreach", "httr", "jsonlite", "magick"],
15211 "broken": true
15212 },
15213 "ReactomeGraph4R": {
15214 "name": "ReactomeGraph4R",
15215 "version": "1.12.0",
15216 "sha256": "17xkrqyp5wdsdd0gpplsk3qfsr8sgf1ap0vz6v34xlhbmzdq3rs8",
15217 "depends": ["ReactomeContentService4R", "data_table", "doParallel", "foreach", "getPass", "jsonlite", "magrittr", "neo4r", "purrr", "rlang"],
15218 "broken": true
15219 },
15220 "RefNet": {
15221 "name": "RefNet",
15222 "version": "1.6.1",
15223 "sha256": "0l0krjjk1jld7z5zy6k3z6m2qkqd86yj92xfck75q3bq3jm96h0j",
15224 "depends": ["AnnotationHub", "BiocGenerics", "IRanges", "PSICQUIC", "RCurl", "shiny"],
15225 "broken": true
15226 },
15227 "RefPlus": {
15228 "name": "RefPlus",
15229 "version": "1.40.0",
15230 "sha256": "13qlm4smaafx1x78wn959wc1rm4wns7l6qgdmh1lg5khkrrh3x19",
15231 "depends": ["Biobase", "affy", "affyPLM", "preprocessCore"],
15232 "broken": true
15233 },
15234 "RepViz": {
15235 "name": "RepViz",
15236 "version": "1.24.0",
15237 "sha256": "0822djg1akxrbz02wvvyn54b25nsrnhvwprnj4nj5bz981gcbn2p",
15238 "depends": ["GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "biomaRt"],
15239 "broken": true
15240 },
15241 "Repitools": {
15242 "name": "Repitools",
15243 "version": "1.54.0",
15244 "sha256": "0k5vgpdnk4l0bi55dpidb2c6g13gyfia4xjzgsaliqaz3ss5w61x",
15245 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "DNAcopy", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "MASS", "Rsamtools", "Rsolnp", "S4Vectors", "cluster", "edgeR", "gplots", "rtracklayer"],
15246 "broken": true
15247 },
15248 "Rfastp": {
15249 "name": "Rfastp",
15250 "version": "1.18.0",
15251 "sha256": "0lbfwgy5iv7jbbfgsijcyd7kfx7r5lpj3k5xypfdcx8cj9mm3ysb",
15252 "depends": ["Rcpp", "Rhtslib", "ggplot2", "reshape2", "rjson", "zlibbioc"],
15253 "broken": true
15254 },
15255 "Rgin": {
15256 "name": "Rgin",
15257 "version": "1.15.0",
15258 "sha256": "1x5zj2d5rvsr2xh0ifpnrys9v91dal1xxhv5mmk16rs8wzwqpqba",
15259 "depends": ["RcppEigen"],
15260 "broken": true
15261 },
15262 "Ringo": {
15263 "name": "Ringo",
15264 "version": "1.34.0",
15265 "sha256": "0r549n840sq9whaz8nk7rz3wardxc8jvwdni4bd5f7zzrhj0ynhl",
15266 "depends": ["Biobase", "BiocGenerics", "Matrix", "RColorBrewer", "genefilter", "lattice", "limma", "vsn"],
15267 "broken": true
15268 },
15269 "Risa": {
15270 "name": "Risa",
15271 "version": "1.12.0",
15272 "sha256": "0s23fbdk1v1cg0c67vhkz53wava1swjig8fz8jsv8av0pqb0rg17",
15273 "depends": ["Biobase", "Rcpp", "affy", "biocViews", "xcms"],
15274 "broken": true
15275 },
15276 "RmiR": {
15277 "name": "RmiR",
15278 "version": "1.26.0",
15279 "sha256": "1nnpr5jp5anbqbgyg53qqjhi49bibymc0l3yj6ar5d6csavrympb",
15280 "depends": ["DBI", "RmiR_Hs_miRNA"],
15281 "broken": true
15282 },
15283 "Roleswitch": {
15284 "name": "Roleswitch",
15285 "version": "1.8.0",
15286 "sha256": "0libkpp9scrbakhzp030bx86f4np6ijn01r8xzn02f5106h23gz7",
15287 "depends": ["Biobase", "Biostrings", "DBI", "biomaRt", "microRNA", "plotrix", "pracma", "reshape"],
15288 "broken": true
15289 },
15290 "Rolexa": {
15291 "name": "Rolexa",
15292 "version": "1.26.0",
15293 "sha256": "184v27zycmqnj4fpjgrxl3vcxxfxwkbfqdzm6wsyxixm93rmz7v4",
15294 "depends": ["Biostrings", "IRanges", "ShortRead", "mclust"],
15295 "broken": true
15296 },
15297 "RpsiXML": {
15298 "name": "RpsiXML",
15299 "version": "2.12.0",
15300 "sha256": "0zlcr1f5sf98bwxakbmq33kniwlpxcc32z5fz7vqsasyv5vbz1ks",
15301 "depends": ["AnnotationDbi", "Biobase", "RBGL", "XML", "annotate", "graph", "hypergraph"],
15302 "broken": true
15303 },
15304 "Rtreemix": {
15305 "name": "Rtreemix",
15306 "version": "1.69.0",
15307 "sha256": "1sw0linj05wz2f9ax5809mcl1l7h16nvdk8xxl2pwgv78jkfzq8h",
15308 "depends": ["Biobase", "Hmisc", "graph"],
15309 "broken": true
15310 },
15311 "SAGx": {
15312 "name": "SAGx",
15313 "version": "1.44.0",
15314 "sha256": "0rrw1y80ybpskwvcdbyqq8m4d17sz07bv9gpa27rvfq2sy4znsk6",
15315 "depends": ["Biobase", "multtest"],
15316 "broken": true
15317 },
15318 "SARC": {
15319 "name": "SARC",
15320 "version": "1.6.0",
15321 "sha256": "04g3pq9az8jfffgq19y8lzlhjrwi7gjlynfcpxpqsy8dk3gw5fwj",
15322 "depends": ["DescTools", "GenomicFeatures", "GenomicRanges", "IRanges", "RColorBrewer", "RaggedExperiment", "data_table", "ggplot2", "gridExtra", "gtable", "metap", "multtest", "plotly", "plyranges", "reshape2", "scales", "tidyverse"],
15323 "broken": true
15324 },
15325 "SCATE": {
15326 "name": "SCATE",
15327 "version": "1.10.0",
15328 "sha256": "1fkswn9xlbr4mrnr62yzk51dri7rzbvf28whh7qhdfxgyvavw439",
15329 "depends": ["GenomicAlignments", "GenomicRanges", "mclust", "preprocessCore", "Rtsne", "SCATEData", "splines2", "xgboost"],
15330 "broken": true
15331 },
15332 "SEPA": {
15333 "name": "SEPA",
15334 "version": "1.0.0",
15335 "sha256": "1hvkz3pyp8qkq1mjw9wl426db6n3ay05bx2djkdpvpbai4fjwgvc",
15336 "depends": ["ggplot2", "org_Hs_eg_db", "org_Mm_eg_db", "reshape2", "segmented", "shiny", "topGO"],
15337 "broken": true
15338 },
15339 "SEPIRA": {
15340 "name": "SEPIRA",
15341 "version": "1.20.0",
15342 "sha256": "1yhlm6l9jv8fhdhnhpj7r8cdpnrp1la287x85gcssqjnv5v4k047",
15343 "depends": ["corpcor", "limma"],
15344 "broken": true
15345 },
15346 "SGCP": {
15347 "name": "SGCP",
15348 "version": "1.8.0",
15349 "sha256": "0jagx4ygl1sz32l4hskqn87qmnpqwdjj2y0basa07gapny3df879",
15350 "depends": ["DescTools", "GO_db", "GOstats", "RColorBrewer", "RSpectra", "Rgraphviz", "SummarizedExperiment", "annotate", "caret", "dplyr", "expm", "genefilter", "ggplot2", "ggridges", "graph", "openxlsx", "org_Hs_eg_db", "plyr", "reshape2", "xtable"],
15351 "broken": true
15352 },
15353 "SISPA": {
15354 "name": "SISPA",
15355 "version": "1.0.0",
15356 "sha256": "01kf83hlc7qyyxr4dx86m9vc16cydrkw4sajs2ikpn2fnrqkx6z1",
15357 "depends": ["GSVA", "changepoint", "data_table", "ggplot2", "plyr"],
15358 "broken": true
15359 },
15360 "SJava": {
15361 "name": "SJava",
15362 "version": "0.96.0",
15363 "sha256": "17qvrd8n0vrn9fn9p31s2bhzf6064hnf89c54hbx3flzki73waaz",
15364 "depends": [],
15365 "broken": true
15366 },
15367 "SLGI": {
15368 "name": "SLGI",
15369 "version": "1.30.0",
15370 "sha256": "1pardqmvmi4877q09n3379wq57pyqla53s8gxvygrqny2drb5crj",
15371 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "GO_db", "ScISI", "lattice"],
15372 "broken": true
15373 },
15374 "SMAP": {
15375 "name": "SMAP",
15376 "version": "1.34.0",
15377 "sha256": "07mdnmirsbz8m5zky169q2mqdn1sdh1nlx8qsgdf8h0n0vcs2h3z",
15378 "depends": [],
15379 "broken": true
15380 },
15381 "SNPchip": {
15382 "name": "SNPchip",
15383 "version": "2.16.0",
15384 "sha256": "1fxskvkzn0mfcg2zjs2r2fr0pifrha54a15vbxxcawy4pggf7fdv",
15385 "depends": ["Biobase", "GenomeInfoDb", "GenomicRanges", "IRanges", "SummarizedExperiment", "foreach", "lattice", "oligoClasses"],
15386 "broken": true
15387 },
15388 "SQLDataFrame": {
15389 "name": "SQLDataFrame",
15390 "version": "1.22.0",
15391 "sha256": "1hhllinhlb4byhjizkh68lk7rjxwgg1w7s4ngd99dlws814gav1z",
15392 "depends": ["BiocGenerics", "DBI", "DelayedArray", "RSQLite", "S4Vectors", "duckdb"],
15393 "broken": true
15394 },
15395 "SQUADD": {
15396 "name": "SQUADD",
15397 "version": "1.20.0",
15398 "sha256": "1nxf68waqnm9jaj0r8z1499kw5c6l1sykj38wikcc39bsyy23kxm",
15399 "depends": ["RColorBrewer"],
15400 "broken": true
15401 },
15402 "SSPA": {
15403 "name": "SSPA",
15404 "version": "2.10.0",
15405 "sha256": "1835g6chjrl1kz5zc710jy0lx04b84khk2kx981ga6rmlihn5xyc",
15406 "depends": ["lattice", "limma", "qvalue"],
15407 "broken": true
15408 },
15409 "STAN": {
15410 "name": "STAN",
15411 "version": "1.4.0",
15412 "sha256": "0phrznzv3n9nvjbxb172ywxcc6dfjz2gw21w4nzxiwcjaf3kg841",
15413 "depends": ["Rsolnp"],
15414 "broken": true
15415 },
15416 "STROMA4": {
15417 "name": "STROMA4",
15418 "version": "1.24.0",
15419 "sha256": "1x3zgxkcck8ffh89mql45cp54c94n64kf9x6dan9wl24bj3x869f",
15420 "depends": ["Biobase", "BiocParallel", "cluster", "matrixStats"],
15421 "broken": true
15422 },
15423 "STdeconvolve": {
15424 "name": "STdeconvolve",
15425 "version": "1.8.0",
15426 "sha256": "0pyyxmh4bnavsdw6riv72y5m8l53mfr0lpiy9mh0qn57rlmw5fr9",
15427 "depends": ["BiocParallel", "Matrix", "clue", "ggplot2", "mgcv", "reshape2", "scatterpie", "slam", "topicmodels", "viridis"],
15428 "broken": true
15429 },
15430 "SVM2CRM": {
15431 "name": "SVM2CRM",
15432 "version": "1.2.0",
15433 "sha256": "06jhyvq3j35skvkf57iqfphypsv43k12i0wybhhvx4wjsdrrhmwq",
15434 "depends": ["AnnotationDbi", "GenomicRanges", "IRanges", "LiblineaR", "ROCR", "SVM2CRMdata", "mclust", "pls", "rtracklayer", "squash", "verification", "zoo"],
15435 "broken": true
15436 },
15437 "ScISI": {
15438 "name": "ScISI",
15439 "version": "1.42.0",
15440 "sha256": "0bmpl2zaalwxhhc9vj9v3x8ig6hbj4lrbfl2dxmivgsh1hqvbcli",
15441 "depends": ["AnnotationDbi", "GO_db", "RpsiXML", "annotate", "apComplex", "org_Sc_sgd_db"],
15442 "broken": true
15443 },
15444 "ScreenR": {
15445 "name": "ScreenR",
15446 "version": "1.10.0",
15447 "sha256": "10mbdr4bf4pv8m8d6smppr6yrcsdk1dkx87qb9rr6fqvf3xwvdsq",
15448 "depends": ["dplyr", "edgeR", "ggplot2", "ggvenn", "limma", "magrittr", "patchwork", "purrr", "rlang", "scales", "stringr", "tibble", "tidyr", "tidyselect"],
15449 "broken": true
15450 },
15451 "SigFuge": {
15452 "name": "SigFuge",
15453 "version": "1.46.0",
15454 "sha256": "0x9px4mm24r2ffw1vd26rdm0ibv0023amsjhda59gkwxdgppkgj7",
15455 "depends": ["GenomicRanges", "ggplot2", "matlab", "reshape", "sigclust"],
15456 "broken": true
15457 },
15458 "SimBindProfiles": {
15459 "name": "SimBindProfiles",
15460 "version": "1.8.0",
15461 "sha256": "1cyqlzb6vykxndslwvmj9sn7hzrq3lqjwsmvkvl7ivfigrslg142",
15462 "depends": ["Biobase", "Ringo", "limma", "mclust"],
15463 "broken": true
15464 },
15465 "SomatiCA": {
15466 "name": "SomatiCA",
15467 "version": "2.1.0",
15468 "sha256": "1a4c8hnl93mnqmm9abc2njcqrlynzbsf39im2gi3ypyjnzabs7m8",
15469 "depends": ["DNAcopy", "GenomicRanges", "IRanges", "doParallel", "foreach", "lars", "mvtnorm", "rebmix", "sn"],
15470 "broken": true
15471 },
15472 "SpacePAC": {
15473 "name": "SpacePAC",
15474 "version": "1.8.0",
15475 "sha256": "11szjavnv8b3sdqdzda3vsx3rbzmnzdimm4b37lm3rfqzrs14qhc",
15476 "depends": ["iPAC"],
15477 "broken": true
15478 },
15479 "SpidermiR": {
15480 "name": "SpidermiR",
15481 "version": "1.32.0",
15482 "sha256": "07s421c8ashww8x99ac18fy1lvjl4zmm3jsz0fggw1gvii172c1x",
15483 "depends": ["AnnotationDbi", "gdata", "httr", "igraph", "miRNAtap", "miRNAtap_db", "org_Hs_eg_db"],
15484 "broken": true
15485 },
15486 "StarBioTrek": {
15487 "name": "StarBioTrek",
15488 "version": "1.28.0",
15489 "sha256": "0cpgn0zcimg18yybfgrjzdczsinvx6n81jjm850gbi76ararq8sc",
15490 "depends": ["AnnotationDbi", "e1071", "ggplot2", "graphite", "igraph", "MLmetrics", "reshape2", "ROCR", "SpidermiR"],
15491 "broken": true
15492 },
15493 "Starr": {
15494 "name": "Starr",
15495 "version": "1.26.0",
15496 "sha256": "0ra9x1kzr0r2wa1ihapzmldq0fdr91rfbbglmzjnq92wrw6rvkd2",
15497 "depends": ["MASS", "Ringo", "affxparser", "affy", "pspline", "zlibbioc"],
15498 "broken": true
15499 },
15500 "SummarizedBenchmark": {
15501 "name": "SummarizedBenchmark",
15502 "version": "2.20.0",
15503 "sha256": "16gzlkyf76fcd46ck417sxh86smivmaggqvyg0v9v0f4jac7610g",
15504 "depends": ["BiocGenerics", "BiocParallel", "crayon", "digest", "dplyr", "ggplot2", "mclust", "rlang", "S4Vectors", "sessioninfo", "stringr", "SummarizedExperiment", "tibble", "tidyr", "UpSetR"],
15505 "broken": true
15506 },
15507 "Sushi": {
15508 "name": "Sushi",
15509 "version": "1.8.0",
15510 "sha256": "1ldvv1028chnh8ng85534k924cgdmzqb3i18z6xpacsjgg5k7s7l",
15511 "depends": ["biomaRt", "zoo"],
15512 "broken": true
15513 },
15514 "SwimR": {
15515 "name": "SwimR",
15516 "version": "1.8.0",
15517 "sha256": "0vwjrpm4qbhc8afv0zj0al3rv06izp649kz8h3pb1yixw4bwrxg8",
15518 "depends": ["R2HTML", "gplots", "signal"],
15519 "broken": true
15520 },
15521 "TCGAbiolinksGUI": {
15522 "name": "TCGAbiolinksGUI",
15523 "version": "1.23.0",
15524 "sha256": "16757szccczlv1q35y1cnmlkr12s46f63z7ijffpb15q85xlaqdx",
15525 "depends": ["caret", "clusterProfiler", "colourpicker", "data_table", "downloader", "DT", "ELMER", "ggplot2", "ggrepel", "maftools", "pathview", "plotly", "readr", "sesame", "shiny", "shinyBS", "shinydashboard", "shinyFiles", "shinyjs", "stringr", "SummarizedExperiment", "TCGAbiolinks", "TCGAbiolinksGUI_data"],
15526 "broken": true
15527 },
15528 "TDARACNE": {
15529 "name": "TDARACNE",
15530 "version": "1.20.0",
15531 "sha256": "0jf89s2bnz8psd7vqh3l29ch5mb2ilky2jmv8db4kcqaw9157kn8",
15532 "depends": ["Biobase", "Rgraphviz"],
15533 "broken": true
15534 },
15535 "TNBC_CMS": {
15536 "name": "TNBC.CMS",
15537 "version": "1.18.0",
15538 "sha256": "1syygq9br5icbjbmi1kq9gs7g3bw1vzmy8mlf8ga2rk1lw6ika90",
15539 "depends": ["e1071", "forestplot", "GGally", "ggplot2", "ggpubr", "GSVA", "pheatmap", "pracma", "quadprog", "R_utils", "RColorBrewer", "SummarizedExperiment", "survival"],
15540 "broken": true
15541 },
15542 "TSRchitect": {
15543 "name": "TSRchitect",
15544 "version": "1.20.0",
15545 "sha256": "1v9zz8ny9rwkyz98cv49l9ilh68h8mvm2x44n8i8rvjayc50zi9i",
15546 "depends": ["AnnotationHub", "BiocGenerics", "BiocParallel", "dplyr", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "gtools", "IRanges", "readxl", "Rsamtools", "rtracklayer", "S4Vectors", "SummarizedExperiment"],
15547 "broken": true
15548 },
15549 "TSSi": {
15550 "name": "TSSi",
15551 "version": "1.16.2",
15552 "sha256": "0lvvzhm0npm9hc7n9rw9ipqgp7kgyvciapai0y8l4r3c07wh8nbs",
15553 "depends": ["Biobase", "BiocGenerics", "Hmisc", "IRanges", "S4Vectors", "minqa", "plyr"],
15554 "broken": true
15555 },
15556 "TarSeqQC": {
15557 "name": "TarSeqQC",
15558 "version": "1.0.3",
15559 "sha256": "06a9kvyx73ysllid9mafgyp1czhyf06gxma1b6bkyksingpgnb68",
15560 "depends": ["BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "cowplot", "ggplot2", "openxlsx", "plyr", "reshape2"],
15561 "broken": true
15562 },
15563 "TimeSeriesExperiment": {
15564 "name": "TimeSeriesExperiment",
15565 "version": "1.13.0",
15566 "sha256": "0bdpxxr739qdg92qabfx122k9f43vw2hyxp4yxqlbp37vzgcdf2c",
15567 "depends": ["DESeq2", "dplyr", "dynamicTreeCut", "edgeR", "ggplot2", "Hmisc", "limma", "magrittr", "proxy", "S4Vectors", "SummarizedExperiment", "tibble", "tidyr", "vegan", "viridis"],
15568 "broken": true
15569 },
15570 "TimiRGeN": {
15571 "name": "TimiRGeN",
15572 "version": "1.11.0",
15573 "sha256": "104j3rdl1mfklqvpsr753zlplr001cqbkphbhf2xrcfw8si7bgr2",
15574 "depends": ["biomaRt", "clusterProfiler", "dplyr", "FreqProf", "ggdendro", "gghighlight", "ggplot2", "gplots", "gtools", "igraph", "Mfuzz", "MultiAssayExperiment", "RCy3", "readxl", "reshape2", "rWikiPathways", "scales", "stringr", "tidyr"],
15575 "broken": true
15576 },
15577 "TitanCNA": {
15578 "name": "TitanCNA",
15579 "version": "1.45.0",
15580 "sha256": "19znhy9gd40fcv3m1zx6kdh178f74j88rb5pkrdv53q48vcq68l3",
15581 "depends": ["BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "VariantAnnotation", "data_table", "dplyr", "foreach"],
15582 "broken": true
15583 },
15584 "ToPASeq": {
15585 "name": "ToPASeq",
15586 "version": "1.4.0",
15587 "sha256": "18fwifmih7x4wr7s3nr8qwvxbp0a33qj39sfwkvhr97jqdggb78j",
15588 "depends": ["AnnotationDbi", "Biobase", "DESeq", "DESeq2", "GenomicRanges", "KEGGgraph", "RBGL", "R_utils", "Rcpp", "Rgraphviz", "TeachingDemos", "clipper", "doParallel", "edgeR", "fields", "gRbase", "graph", "graphite", "limma", "locfit", "qpgraph"],
15589 "broken": true
15590 },
15591 "TraRe": {
15592 "name": "TraRe",
15593 "version": "1.5.0",
15594 "sha256": "06w5rk2wjam5dhiya9n6kjbjahw4i46cb05zvakcy0f8gwrvb9ic",
15595 "depends": ["BiocParallel", "dqrng", "ggplot2", "glmnet", "gplots", "gtools", "hash", "igraph", "matrixStats", "pvclust", "R_utils", "SummarizedExperiment"],
15596 "broken": true
15597 },
15598 "TransView": {
15599 "name": "TransView",
15600 "version": "1.14.0",
15601 "sha256": "02as66pzhgls2papji5mqpaczvdfpi6af0mafip8i9hj06z41wci",
15602 "depends": ["GenomicRanges", "IRanges", "Rsamtools", "gplots", "zlibbioc"],
15603 "broken": true
15604 },
15605 "Travel": {
15606 "name": "Travel",
15607 "version": "1.6.0",
15608 "sha256": "074v9hl4gzy8081mlas3mjaplchjrmk2bl4f5nkdjclh46xf3wgg",
15609 "depends": ["Rcpp"],
15610 "broken": true
15611 },
15612 "TypeInfo": {
15613 "name": "TypeInfo",
15614 "version": "1.36.0",
15615 "sha256": "0f0cllsf0pw2bgvq9fhfksqsxb2820js5y125vhcr0ns5kcvi07y",
15616 "depends": [],
15617 "broken": true
15618 },
15619 "Vega": {
15620 "name": "Vega",
15621 "version": "1.18.0",
15622 "sha256": "0f7rzzckd69xbnism0v7jl0dly55lwj30nla7yj88qqalnb7ajzs",
15623 "depends": [],
15624 "broken": true
15625 },
15626 "XBSeq": {
15627 "name": "XBSeq",
15628 "version": "1.0.2",
15629 "sha256": "01h3hj4mm7dr16vwbra5iazrgar9nbh2gs2gklyx0wqjfzm3gj49",
15630 "depends": ["Biobase", "DESeq2", "Delaporte", "dplyr", "ggplot2", "locfit", "magrittr", "matrixStats", "pracma"],
15631 "broken": true
15632 },
15633 "XCIR": {
15634 "name": "XCIR",
15635 "version": "1.7.0",
15636 "sha256": "0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw",
15637 "depends": ["biomaRt", "data_table", "ggplot2", "IRanges", "readxl", "S4Vectors", "seqminer", "VariantAnnotation"],
15638 "broken": true
15639 },
15640 "XNAString": {
15641 "name": "XNAString",
15642 "version": "1.15.0",
15643 "sha256": "1q50h6fvkc8fr5kvz3whvfiqx3fkxi8m7r1h459sqk362j9pydrj",
15644 "depends": ["BSgenome", "Biostrings", "GenomicRanges", "IRanges", "Rcpp", "S4Vectors", "data_table", "formattable", "future_apply", "pwalign", "stringi", "stringr"],
15645 "broken": true
15646 },
15647 "affyPara": {
15648 "name": "affyPara",
15649 "version": "1.30.0",
15650 "sha256": "14g7xrzsqqsr2h20nv000dd3v71wq18bq78r345w29fs53kipxxd",
15651 "depends": ["affy", "affyio", "aplpack", "snow", "vsn"],
15652 "broken": true
15653 },
15654 "affyQCReport": {
15655 "name": "affyQCReport",
15656 "version": "1.48.0",
15657 "sha256": "0cw6z8idar5qa9y3svrm5fdimdamb2xjjj59d107h2in7bvgni7j",
15658 "depends": ["Biobase", "RColorBrewer", "affy", "affyPLM", "genefilter", "lattice", "simpleaffy", "xtable"],
15659 "broken": true
15660 },
15661 "affypdnn": {
15662 "name": "affypdnn",
15663 "version": "1.44.0",
15664 "sha256": "1av7a8w86wcslbl3q2zbnga8rww3n7dmwdywq4fm86pbmwh1jz9v",
15665 "depends": ["affy"],
15666 "broken": true
15667 },
15668 "alpine": {
15669 "name": "alpine",
15670 "version": "1.26.0",
15671 "sha256": "1md4m9ln1mpxf7d2h7jnsjyi4zrviiqn9fzk1gkz2n6qj7jwpqbb",
15672 "depends": ["Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "graph", "IRanges", "RBGL", "Rsamtools", "S4Vectors", "speedglm", "stringr", "SummarizedExperiment"],
15673 "broken": true
15674 },
15675 "alsace": {
15676 "name": "alsace",
15677 "version": "1.6.0",
15678 "sha256": "1vrwi2rkccgiwgshz5rxyr55dl7awbh1drbhhsrbpjsbzxwmiv4a",
15679 "depends": ["ALS", "ptw"],
15680 "broken": true
15681 },
15682 "ampliQueso": {
15683 "name": "ampliQueso",
15684 "version": "1.8.0",
15685 "sha256": "0v21y2nd0qwnag0n6h0krr9c0vpv6ig89d0jsi58x3pi5m0mypip",
15686 "depends": ["DESeq", "VariantAnnotation", "doParallel", "edgeR", "foreach", "genefilter", "ggplot2", "gplots", "knitr", "rgl", "rnaSeqMap", "samr", "statmod", "xtable"],
15687 "broken": true
15688 },
15689 "amplican": {
15690 "name": "amplican",
15691 "version": "1.30.0",
15692 "sha256": "0y5bknkn6l32bk2ia0dv3c8pp2dx2n83iwhbqh0l13jajv8j1csd",
15693 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "Matrix", "Rcpp", "S4Vectors", "ShortRead", "cluster", "data_table", "dplyr", "ggplot2", "ggthemes", "gridExtra", "gtable", "knitr", "matrixStats", "pwalign", "rmarkdown", "stringr", "waffle"],
15694 "broken": true
15695 },
15696 "arrayQualityMetrics": {
15697 "name": "arrayQualityMetrics",
15698 "version": "3.64.0",
15699 "sha256": "1kz2d40wx2ksy9dz1z3wylcj7y7ad9z8xphsnz39j02m4g5mbvlp",
15700 "depends": ["Biobase", "Hmisc", "RColorBrewer", "XML", "affy", "affyPLM", "beadarray", "genefilter", "gridSVG", "hwriter", "lattice", "latticeExtra", "limma", "setRNG", "svglite", "vsn"],
15701 "broken": true
15702 },
15703 "barcodetrackR": {
15704 "name": "barcodetrackR",
15705 "version": "1.16.0",
15706 "sha256": "1n2rj50gwqmqj5gs5d3asd3gcs0iv1rr1zh12s55lcsdxyfgp1ar",
15707 "depends": ["RColorBrewer", "S4Vectors", "SummarizedExperiment", "circlize", "cowplot", "dplyr", "ggdendro", "ggplot2", "ggridges", "magrittr", "plyr", "proxy", "rlang", "scales", "shiny", "tibble", "tidyr", "vegan", "viridis"],
15708 "broken": true
15709 },
15710 "beadarray": {
15711 "name": "beadarray",
15712 "version": "2.58.0",
15713 "sha256": "0m9hmy4xn7q2v4ra95b9h08d0qh5qmjgqmg96vabyv46gn5i7qp4",
15714 "depends": ["AnnotationDbi", "BeadDataPackR", "Biobase", "BiocGenerics", "GenomicRanges", "IRanges", "ggplot2", "hexbin", "illuminaio", "limma", "reshape2"],
15715 "broken": true
15716 },
15717 "beadarraySNP": {
15718 "name": "beadarraySNP",
15719 "version": "1.36.0",
15720 "sha256": "1dj5zi9lkyq5lgrcmr08cjdv3ysfa6p9zc8jza8mm6vy14qsl5ah",
15721 "depends": ["Biobase", "quantsmooth"],
15722 "broken": true
15723 },
15724 "benchdamic": {
15725 "name": "benchdamic",
15726 "version": "1.14.3",
15727 "sha256": "0xc05qghdr2xynf5gk695xbpb5hj0wrfcjps34h8cqd249by2dk6",
15728 "depends": ["ALDEx2", "ANCOMBC", "BiocParallel", "DESeq2", "GUniFrac", "MAST", "MGLM", "Maaslin2", "MicrobiomeStat", "NOISeq", "RColorBrewer", "Seurat", "SummarizedExperiment", "TreeSummarizedExperiment", "corncob", "cowplot", "dearseq", "edgeR", "ggdendro", "ggplot2", "ggridges", "limma", "lme4", "maaslin3", "metagenomeSeq", "microbiome", "mixOmics", "phyloseq", "plyr", "reshape2", "tidytext", "zinbwave"],
15729 "broken": true
15730 },
15731 "betr": {
15732 "name": "betr",
15733 "version": "1.26.0",
15734 "sha256": "1rs2xajrac3a4sk88i7zq3v849969iw0k8wmpbc0ihw9m4ljb0sx",
15735 "depends": ["Biobase", "limma", "mvtnorm"],
15736 "broken": true
15737 },
15738 "bgafun": {
15739 "name": "bgafun",
15740 "version": "1.32.0",
15741 "sha256": "1wakjjdcgzl9snsa9i1f7kk0ppwiccxmznd93yawvjk74gqwnkp3",
15742 "depends": ["ade4", "made4", "seqinr"],
15743 "broken": true
15744 },
15745 "bgx": {
15746 "name": "bgx",
15747 "version": "1.36.0",
15748 "sha256": "1x0i4llp6yrfybp7lwqwc7kb1s12dl8a0nwymhjd3fkfv5lslfbx",
15749 "depends": ["Biobase", "affy", "gcrma"],
15750 "broken": true
15751 },
15752 "bigPint": {
15753 "name": "bigPint",
15754 "version": "1.15.0",
15755 "sha256": "1r9gr5f9as09ifagal5k7713h95qjw508cf8ny3j1jmqd24v6xhs",
15756 "depends": ["DelayedArray", "dplyr", "GGally", "ggplot2", "gridExtra", "hexbin", "Hmisc", "htmlwidgets", "plotly", "plyr", "RColorBrewer", "reshape", "shiny", "shinycssloaders", "shinydashboard", "stringr", "SummarizedExperiment", "tidyr"],
15757 "broken": true
15758 },
15759 "bigmemoryExtras": {
15760 "name": "bigmemoryExtras",
15761 "version": "1.14.2",
15762 "sha256": "05ksk3phvh4wc3vgfj5bl1jfxhndia90bkq9s91wfjzcfkrd41q8",
15763 "depends": ["Biobase", "bigmemory"],
15764 "broken": true
15765 },
15766 "biodbExpasy": {
15767 "name": "biodbExpasy",
15768 "version": "1.8.1",
15769 "sha256": "0n5avxhv5131122h18d3r2v9c64i3nb251hmz8hhc6chmk203fmj",
15770 "depends": ["R6", "biodb", "chk", "stringr"],
15771 "broken": true
15772 },
15773 "biodbHmdb": {
15774 "name": "biodbHmdb",
15775 "version": "1.14.0",
15776 "sha256": "0xpc2dygjm8gy7612ggk2kgd599859l0i8qdjzx01vvchckkps5h",
15777 "depends": ["R6", "Rcpp", "biodb", "testthat", "zip"],
15778 "broken": true
15779 },
15780 "biodbKegg": {
15781 "name": "biodbKegg",
15782 "version": "1.10.2",
15783 "sha256": "0rwxbg3ij5rg3agzsxib7f80b05ar40xnql2krl44c3n43yqkwyw",
15784 "depends": ["R6", "biodb", "chk", "lifecycle"],
15785 "broken": true
15786 },
15787 "biodbLipidmaps": {
15788 "name": "biodbLipidmaps",
15789 "version": "1.10.0",
15790 "sha256": "1p181kwy9q8jj4m7flg71pqn7h6865hbwha4n6j2qki830vym6rv",
15791 "depends": ["R6", "biodb", "lifecycle"],
15792 "broken": true
15793 },
15794 "biodbMirbase": {
15795 "name": "biodbMirbase",
15796 "version": "1.5.0",
15797 "sha256": "17clip9l8as9pz390bqgj07jxp1rijis2f5hj53s6vqaqmiyz4il",
15798 "depends": ["biodb", "chk", "R6", "stringr"],
15799 "broken": true
15800 },
15801 "biodbNcbi": {
15802 "name": "biodbNcbi",
15803 "version": "1.12.0",
15804 "sha256": "19f37fgbhb22k27riklbdary3a1ybnm7drapfkss7grizwpa9d0x",
15805 "depends": ["R6", "XML", "biodb", "chk"],
15806 "broken": true
15807 },
15808 "biodbNci": {
15809 "name": "biodbNci",
15810 "version": "1.12.0",
15811 "sha256": "10fyx0mdhllqlykhm3xnv59hw0ham27wgnswapk0a36rr804mfpj",
15812 "depends": ["R6", "Rcpp", "biodb", "chk", "testthat"],
15813 "broken": true
15814 },
15815 "biodbUniprot": {
15816 "name": "biodbUniprot",
15817 "version": "1.14.0",
15818 "sha256": "1m27a7ngn4gwhj37vwg2mq5588q3cp85fcq5fjbjygi7l3d3pwg3",
15819 "depends": ["R6", "biodb"],
15820 "broken": true
15821 },
15822 "biosvd": {
15823 "name": "biosvd",
15824 "version": "2.6.0",
15825 "sha256": "0mjkan7drib9v49dk3rnrkydm1dxfqimk5gk4jm9qv8kdfcjk0zh",
15826 "depends": ["Biobase", "BiocGenerics", "NMF"],
15827 "broken": true
15828 },
15829 "birta": {
15830 "name": "birta",
15831 "version": "1.14.0",
15832 "sha256": "1pszpvmvjp1r0bwj7w9ws0y8xmb3yfmq5gifj9jwvgw2p7y718zr",
15833 "depends": ["Biobase", "MASS", "limma"],
15834 "broken": true
15835 },
15836 "birte": {
15837 "name": "birte",
15838 "version": "1.6.1",
15839 "sha256": "08jkjlkjswz3x4sxw80xr9ck6277ag1gzv5y1dxh7aa6i644w48p",
15840 "depends": ["Biobase", "MASS", "Rcpp", "RcppArmadillo", "glmnet", "limma", "nem"],
15841 "broken": true
15842 },
15843 "blima": {
15844 "name": "blima",
15845 "version": "1.42.0",
15846 "sha256": "0hsgd1zl3i2v4916c7dxlwlpm3affmgpb9s58p9rj1as3nvk6z9l",
15847 "depends": ["Biobase", "BiocGenerics", "Rcpp", "beadarray"],
15848 "broken": true
15849 },
15850 "brainflowprobes": {
15851 "name": "brainflowprobes",
15852 "version": "1.16.0",
15853 "sha256": "06gga72ns7h9c6mdbvbj8afpkyizg7maazriilvaq433h6s1pgqb",
15854 "depends": ["Biostrings", "BSgenome_Hsapiens_UCSC_hg19", "bumphunter", "cowplot", "derfinder", "derfinderPlot", "GenomicRanges", "GenomicState", "ggplot2", "RColorBrewer"],
15855 "broken": true
15856 },
15857 "branchpointer": {
15858 "name": "branchpointer",
15859 "version": "1.34.0",
15860 "sha256": "0n3linwha0lj65m72k7zm2bslxkdkjb1yqgs5ksdxrlziwmfs2nj",
15861 "depends": ["BSgenome_Hsapiens_UCSC_hg38", "Biostrings", "GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "biomaRt", "caret", "cowplot", "data_table", "gbm", "ggplot2", "kernlab", "plyr", "rtracklayer", "stringr"],
15862 "broken": true
15863 },
15864 "bridge": {
15865 "name": "bridge",
15866 "version": "1.34.0",
15867 "sha256": "08lfbczaj7hkgqfsm060z56anx1yvsfwknzw40gq919k0zm9vfcf",
15868 "depends": ["rama"],
15869 "broken": true
15870 },
15871 "broadSeq": {
15872 "name": "broadSeq",
15873 "version": "1.2.4",
15874 "sha256": "00xqpr915yhimmimbr43010ljdj7fiq613a3yq6haxvkqjpv83ri",
15875 "depends": ["BiocStyle", "DELocal", "DESeq2", "EBSeq", "NOISeq", "SummarizedExperiment", "clusterProfiler", "dplyr", "edgeR", "forcats", "genefilter", "ggplot2", "ggplotify", "ggpubr", "pheatmap", "plyr", "purrr", "sechm", "stringr"],
15876 "broken": true
15877 },
15878 "caOmicsV": {
15879 "name": "caOmicsV",
15880 "version": "1.0.0",
15881 "sha256": "0162h17szpr98g4lgz5nypcrslk4103hdn5qdxfxv6frssn9l9g3",
15882 "depends": ["bc3net", "igraph"],
15883 "broken": true
15884 },
15885 "ccmap": {
15886 "name": "ccmap",
15887 "version": "1.34.0",
15888 "sha256": "1khc7n1qpm7f4mpqy4qa74v03q581knig30hbvcd0a5x8gk8bvj3",
15889 "depends": ["AnnotationDbi", "BiocManager", "ccdata", "data_table", "doParallel", "foreach", "lsa", "xgboost"],
15890 "broken": true
15891 },
15892 "cellGrowth": {
15893 "name": "cellGrowth",
15894 "version": "1.14.0",
15895 "sha256": "0d40kll2rkzijyk0d0xb9rzyck5r0hkybv0j1ba72g9kk2mdmz7z",
15896 "depends": ["lattice", "locfit"],
15897 "broken": true
15898 },
15899 "cellHTS": {
15900 "name": "cellHTS",
15901 "version": "1.40.2",
15902 "sha256": "1cdzrmqr3fwxylc3m7g72bmc5iml266355i0mfdavp2q9y28kc85",
15903 "depends": ["Biobase", "RColorBrewer", "genefilter", "prada"],
15904 "broken": true
15905 },
15906 "cellHTS2": {
15907 "name": "cellHTS2",
15908 "version": "2.34.1",
15909 "sha256": "068lqpxhy04fhpma8cbd79jwg0cifvg8qhav5a4p22dgmalvajw1",
15910 "depends": ["Biobase", "Category", "GSEABase", "RColorBrewer", "genefilter", "hwriter", "locfit", "prada", "splots", "vsn"],
15911 "broken": true
15912 },
15913 "cellTree": {
15914 "name": "cellTree",
15915 "version": "1.27.0",
15916 "sha256": "0yfr59fcbdj03ikkpvw1qcxqrjbkz7nkfmb5m1xr4k9qs39bq9sb",
15917 "depends": ["gplots", "igraph", "maptpx", "slam", "topGO", "topicmodels", "xtable"],
15918 "broken": true
15919 },
15920 "charm": {
15921 "name": "charm",
15922 "version": "2.16.1",
15923 "sha256": "00bvgpj705v9jb43skj5iljjf131dnz90n2rc1yww6s2kh4qqppm",
15924 "depends": ["BSgenome", "Biobase", "Biostrings", "IRanges", "RColorBrewer", "SQN", "ff", "fields", "genefilter", "gtools", "limma", "nor1mix", "oligo", "oligoClasses", "preprocessCore", "siggenes", "sva"],
15925 "broken": true
15926 },
15927 "chevreulShiny": {
15928 "name": "chevreulShiny",
15929 "version": "1.0.0",
15930 "sha256": "0cl1wx66wk2l206yjvhnjmdacn3vbci6gzxii5djqiisr8zp42ml",
15931 "depends": ["ComplexHeatmap", "DBI", "DT", "DataEditR", "EnhancedVolcano", "RSQLite", "S4Vectors", "SingleCellExperiment", "alabaster_base", "chevreulPlot", "chevreulProcess", "clustree", "dplyr", "fs", "future", "ggplot2", "ggplotify", "patchwork", "plotly", "purrr", "rappdirs", "readr", "scales", "shiny", "shinyFiles", "shinyWidgets", "shinydashboard", "shinyhelper", "shinyjs", "stringr", "tibble", "tidyr", "tidyselect", "waiter", "wiggleplotr"],
15932 "broken": true
15933 },
15934 "chimera": {
15935 "name": "chimera",
15936 "version": "1.12.0",
15937 "sha256": "11arbg6c76rx4zyylp6ga8ygx8890h0pkg4ciwhy4xc8x1smmq7r",
15938 "depends": ["AnnotationDbi", "BSgenome_Hsapiens_UCSC_hg19", "Biobase", "GenomicAlignments", "GenomicRanges", "Homo_sapiens", "Rsamtools", "TxDb_Hsapiens_UCSC_hg19_knownGene"],
15939 "broken": true
15940 },
15941 "chroGPS": {
15942 "name": "chroGPS",
15943 "version": "1.14.0",
15944 "sha256": "0i0hrf38sjsay6r6zh69cy6xki17cjw427szq4h7770jlphiq8n1",
15945 "depends": ["Biobase", "ICSNP", "IRanges", "MASS", "changepoint", "cluster"],
15946 "broken": true
15947 },
15948 "chromstaR": {
15949 "name": "chromstaR",
15950 "version": "1.32.0",
15951 "sha256": "071aipwk1awr71hvzflps49dzp83p12zm1pbyx4l8d2v3wbj0dlz",
15952 "depends": ["BiocGenerics", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "bamsignals", "chromstaRData", "doParallel", "foreach", "ggplot2", "mvtnorm", "reshape2"],
15953 "broken": true
15954 },
15955 "chromswitch": {
15956 "name": "chromswitch",
15957 "version": "1.22.0",
15958 "sha256": "007wa8980hkpja33ph3b3fjsjrf91cnwc0a7y4014k8xxmmgfdh7",
15959 "depends": ["Biobase", "BiocParallel", "cluster", "dplyr", "GenomicRanges", "gplots", "IRanges", "lazyeval", "magrittr", "matrixStats", "NMF", "rtracklayer", "S4Vectors", "tidyr"],
15960 "broken": true
15961 },
15962 "cisPath": {
15963 "name": "cisPath",
15964 "version": "1.47.0",
15965 "sha256": "0q9fk47jwsbslyqjx6b4qr65xvxappr63xkvm2a6458r3hxaf41y",
15966 "depends": [],
15967 "broken": true
15968 },
15969 "clonotypeR": {
15970 "name": "clonotypeR",
15971 "version": "1.8.0",
15972 "sha256": "1fj00hrxijkn002ixa7kn07jq94mlsgz99xr3sapzg0jqacgp9q0",
15973 "depends": [],
15974 "broken": true
15975 },
15976 "coMET": {
15977 "name": "coMET",
15978 "version": "1.2.1",
15979 "sha256": "017sjx9wamyg6jglnbw1ynkbnp9idj9142jhkqvy8xji6kqh5xpk",
15980 "depends": ["GenomicRanges", "Gviz", "IRanges", "S4Vectors", "biomaRt", "corrplot", "ggbio", "ggplot2", "gridExtra", "hash", "psych", "rtracklayer", "trackViewer"],
15981 "broken": true
15982 },
15983 "coRNAi": {
15984 "name": "coRNAi",
15985 "version": "1.20.0",
15986 "sha256": "05jv85jbb5lz0x0cmg52sn6gnsscyq939yyk6ll9061bx51as7cv",
15987 "depends": ["MASS", "cellHTS2", "gplots", "lattice", "limma", "locfit"],
15988 "broken": true
15989 },
15990 "cobindR": {
15991 "name": "cobindR",
15992 "version": "1.8.0",
15993 "sha256": "06nckxm5hz6c336p5fvfmccfzdri68qcmagkyjg7nnfsyl66fri1",
15994 "depends": ["BSgenome", "BiocGenerics", "Biostrings", "IRanges", "biomaRt", "gmp", "gplots", "mclust", "seqinr", "yaml"],
15995 "broken": true
15996 },
15997 "coexnet": {
15998 "name": "coexnet",
15999 "version": "1.19.1",
16000 "sha256": "0zw8a8pqmajqnv5n6i7fn7krwax81sd4c6wqm4zr61fy2blqzv3h",
16001 "depends": ["acde", "affy", "Biobase", "GEOquery", "igraph", "limma", "minet", "rmarkdown", "siggenes", "STRINGdb", "SummarizedExperiment", "vsn"],
16002 "broken": true
16003 },
16004 "comapr": {
16005 "name": "comapr",
16006 "version": "1.12.0",
16007 "sha256": "0ggks950kr5c8x4l0479lh882r4svxagaq2y65hv26x23c03hzkx",
16008 "depends": ["BiocParallel", "GenomeInfoDb", "GenomicRanges", "Gviz", "IRanges", "Matrix", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "circlize", "dplyr", "foreach", "ggplot2", "gridExtra", "plotly", "plyr", "reshape2", "rlang", "scales", "tidyr"],
16009 "broken": true
16010 },
16011 "compartmap": {
16012 "name": "compartmap",
16013 "version": "1.18.0",
16014 "sha256": "0lvgwnp5cgn96m9y4snpczfbfs72lxbaa36lnmwa7j07jy4s9108",
16015 "depends": ["BiocSingular", "DelayedArray", "DelayedMatrixStats", "GenomicRanges", "ggplot2", "HDF5Array", "Matrix", "RaggedExperiment", "reshape2", "RMTstat", "rtracklayer", "scales", "SummarizedExperiment"],
16016 "broken": true
16017 },
16018 "conclus": {
16019 "name": "conclus",
16020 "version": "1.5.0",
16021 "sha256": "09rk73sxqxsy0zq07n67jxqbzb1rlxlj0phg6987szdjwxmag6jc",
16022 "depends": ["AnnotationDbi", "Biobase", "BiocFileCache", "biomaRt", "clusterProfiler", "dbscan", "doParallel", "dplyr", "factoextra", "foreach", "fpc", "GEOquery", "ggplot2", "gridExtra", "org_Hs_eg_db", "org_Mm_eg_db", "pheatmap", "rlang", "Rtsne", "scales", "scater", "scran", "SingleCellExperiment", "stringr", "SummarizedExperiment"],
16023 "broken": true
16024 },
16025 "contiBAIT": {
16026 "name": "contiBAIT",
16027 "version": "1.30.0",
16028 "sha256": "1asyfx0mbg0pli2g533xmlppfw0s0f1y4vf2rfrnai4chsh1rh0k",
16029 "depends": ["BH", "BiocGenerics", "BiocParallel", "clue", "cluster", "colorspace", "data_table", "diagram", "DNAcopy", "exomeCopy", "GenomicAlignments", "GenomicFiles", "GenomicRanges", "ggplot2", "gplots", "gtools", "IRanges", "Rcpp", "reshape2", "Rsamtools", "rtracklayer", "S4Vectors", "TSP"],
16030 "broken": true
16031 },
16032 "copynumber": {
16033 "name": "copynumber",
16034 "version": "1.10.0",
16035 "sha256": "1g03cy5inbhzhl5hj8vma34xm8lixilhalavjysp93bwg4dfskv6",
16036 "depends": ["BiocGenerics", "GenomicRanges", "IRanges", "S4Vectors"],
16037 "broken": true
16038 },
16039 "crisprseekplus": {
16040 "name": "crisprseekplus",
16041 "version": "1.26.0",
16042 "sha256": "1ccz944jwlcnflrdh1aamfc5b03n6pys65b13f049f0x214vqg68",
16043 "depends": ["AnnotationDbi", "BiocManager", "BSgenome", "CRISPRseek", "DT", "GenomicFeatures", "GenomicRanges", "GUIDEseq", "hash", "shiny", "shinyjs"],
16044 "broken": true
16045 },
16046 "crossmeta": {
16047 "name": "crossmeta",
16048 "version": "1.30.0",
16049 "sha256": "1ghgfby1rl3phldyipli550f0i289yanb0v4nzn5l1xnpkxaj6fa",
16050 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocManager", "DBI", "DT", "GEOquery", "RCurl", "RSQLite", "XML", "affxparser", "affy", "data_table", "edgeR", "fdrtool", "limma", "matrixStats", "metaMA", "miniUI", "oligo", "reader", "readxl", "shiny", "shinyBS", "shinyWidgets", "shinyjs", "shinypanel", "stringr", "sva", "tibble"],
16051 "broken": true
16052 },
16053 "ctgGEM": {
16054 "name": "ctgGEM",
16055 "version": "1.7.0",
16056 "sha256": "0hmapz96r024r3bws1wf0spd0i81viyma859y9nn93jrwxscrcdb",
16057 "depends": ["Biobase", "BiocGenerics", "igraph", "Matrix", "monocle", "sincell", "SummarizedExperiment", "TSCAN"],
16058 "broken": true
16059 },
16060 "cummeRbund": {
16061 "name": "cummeRbund",
16062 "version": "2.50.0",
16063 "sha256": "1i1zcrfizp4ix0bgx3gjbd4y4hj7dfs15j4ssh87kkx61y7x6yl8",
16064 "depends": ["Biobase", "BiocGenerics", "Gviz", "RSQLite", "S4Vectors", "fastcluster", "ggplot2", "plyr", "reshape2", "rtracklayer"],
16065 "broken": true
16066 },
16067 "customProDB": {
16068 "name": "customProDB",
16069 "version": "1.48.0",
16070 "sha256": "1ixpq5fasq2n2f1rbwi1icnb6v96hakkv7kqsvzmp2lraxqh5lv0",
16071 "depends": ["AhoCorasickTrie", "AnnotationDbi", "Biostrings", "DBI", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "RCurl", "RSQLite", "Rsamtools", "S4Vectors", "VariantAnnotation", "biomaRt", "plyr", "rtracklayer", "stringr", "txdbmaker"],
16072 "broken": true
16073 },
16074 "cytofQC": {
16075 "name": "cytofQC",
16076 "version": "1.8.0",
16077 "sha256": "13lcf0bldkccpgz5673cn2n64wqmwx98qpb9vzdlbin981pxr5ny",
16078 "depends": ["CATALYST", "EZtune", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "e1071", "flowCore", "gbm", "ggplot2", "hrbrthemes", "matrixStats", "randomForest", "rmarkdown", "ssc"],
16079 "broken": true
16080 },
16081 "cytofkit": {
16082 "name": "cytofkit",
16083 "version": "1.2.4",
16084 "sha256": "1pgaw18m4z3az3b0d5d2wlvfq0ha80k5bc0vyjd9grlbwcpvs6nr",
16085 "depends": ["Biobase", "RANN", "Rcpp", "Rtsne", "VGAM", "doParallel", "e1071", "flowCore", "ggplot2", "gplots", "igraph", "pdist", "plyr", "reshape", "reshape2", "shiny", "vegan"],
16086 "broken": true
16087 },
16088 "dandelionR": {
16089 "name": "dandelionR",
16090 "version": "1.0.2",
16091 "sha256": "0m8p003mgf03n69z0bcbid2insskg04vhhrvrppsciqcc9a4rbb4",
16092 "depends": ["BiocGenerics", "MASS", "Matrix", "RANN", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "bluster", "destiny", "igraph", "miloR", "purrr", "rlang", "spam", "uwot"],
16093 "broken": true
16094 },
16095 "dasper": {
16096 "name": "dasper",
16097 "version": "1.9.0",
16098 "sha256": "095ldl40cay5n8lkp8y69lbmflhnbwm1b075s4zgpagn81awp0cn",
16099 "depends": ["basilisk", "BiocFileCache", "BiocParallel", "data_table", "dplyr", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "ggplot2", "ggpubr", "ggrepel", "IRanges", "magrittr", "megadepth", "plyranges", "readr", "reticulate", "rtracklayer", "S4Vectors", "stringr", "SummarizedExperiment", "tidyr"],
16100 "broken": true
16101 },
16102 "dce": {
16103 "name": "dce",
16104 "version": "1.13.0",
16105 "sha256": "02gnlskfgn38fcf5mchp6ippcd2rj4cl4w7r08igaqyl02zy2x80",
16106 "depends": ["MASS", "Matrix", "Rgraphviz", "assertthat", "dplyr", "edgeR", "epiNEM", "expm", "ggplot2", "ggraph", "glm2", "glue", "graph", "graphite", "harmonicmeanp", "igraph", "logger", "magrittr", "metap", "mnem", "naturalsort", "org_Hs_eg_db", "pcalg", "ppcor", "purrr", "reshape2", "rlang", "shadowtext", "tidygraph", "tidyverse"],
16107 "broken": true
16108 },
16109 "ddgraph": {
16110 "name": "ddgraph",
16111 "version": "1.14.0",
16112 "sha256": "0nmrz9cy7l31vym3fcc9m3dmgmbnd5r91p3fxpziaarphi27zszl",
16113 "depends": ["MASS", "RColorBrewer", "Rcpp", "bnlearn", "graph", "gtools", "pcalg", "plotrix"],
16114 "broken": true
16115 },
16116 "debCAM": {
16117 "name": "debCAM",
16118 "version": "1.26.0",
16119 "sha256": "1sh8vbhgrkk1xfk139jxi88s2z70pnr4ji2pnb2gb3s5013zrhk8",
16120 "depends": ["Biobase", "BiocParallel", "NMF", "SummarizedExperiment", "apcluster", "corpcor", "geometry", "nnls", "pcaPP", "rJava"],
16121 "broken": true
16122 },
16123 "deco": {
16124 "name": "deco",
16125 "version": "1.13.0",
16126 "sha256": "0d4abif3v62cbas6hl7pfw8q8jihh7nsra76k9cm6kz54qw4fbnw",
16127 "depends": ["ade4", "AnnotationDbi", "Biobase", "BiocParallel", "BiocStyle", "cluster", "foreign", "gdata", "ggplot2", "gplots", "gridExtra", "limma", "locfit", "made4", "RColorBrewer", "reshape2", "scatterplot3d", "sfsmisc", "SummarizedExperiment"],
16128 "broken": true
16129 },
16130 "destiny": {
16131 "name": "destiny",
16132 "version": "3.22.0",
16133 "sha256": "01l01b6k55ifhppsp83scjf3f168r62xigz73s718ik8qbvirgqa",
16134 "depends": ["Biobase", "BiocGenerics", "Matrix", "RSpectra", "Rcpp", "RcppEigen", "RcppHNSW", "SingleCellExperiment", "SummarizedExperiment", "VIM", "ggplot2", "ggplot_multistats", "ggthemes", "irlba", "knn_covertree", "pcaMethods", "proxy", "rlang", "scales", "scatterplot3d", "smoother", "tidyr", "tidyselect"],
16135 "broken": true
16136 },
16137 "dexus": {
16138 "name": "dexus",
16139 "version": "1.10.0",
16140 "sha256": "0hc28mkmnr37fmw6xw2cywla946gm0cxa8k4hi32d12cm9c24xqx",
16141 "depends": ["BiocGenerics"],
16142 "broken": true
16143 },
16144 "diffloop": {
16145 "name": "diffloop",
16146 "version": "1.24.0",
16147 "sha256": "0v0jg9y08xzw775x2lm82ig1ag4wjf4z2l6a66zmk6qbn59dwj1g",
16148 "depends": ["Biobase", "biomaRt", "data_table", "dplyr", "edgeR", "foreach", "GenomeInfoDb", "GenomicRanges", "ggplot2", "IRanges", "limma", "locfit", "matrixStats", "pbapply", "plyr", "readr", "reshape2", "rtracklayer", "S4Vectors", "statmod", "Sushi"],
16149 "broken": true
16150 },
16151 "domainsignatures": {
16152 "name": "domainsignatures",
16153 "version": "1.30.0",
16154 "sha256": "0rr5d57cjkp46qp2908vh3wyfdgiyaikdgbcxipizcv5a00nq0rx",
16155 "depends": ["AnnotationDbi", "KEGG_db", "biomaRt", "prada"],
16156 "broken": true
16157 },
16158 "dpeak": {
16159 "name": "dpeak",
16160 "version": "1.12.0",
16161 "sha256": "1fx2rrcqmjckk5kk3mfa56b1393b2c8sf566q95d8zmlsvkl03w5",
16162 "depends": ["BSgenome", "IRanges", "MASS", "Rcpp"],
16163 "broken": true
16164 },
16165 "drawProteins": {
16166 "name": "drawProteins",
16167 "version": "1.28.0",
16168 "sha256": "06fv2fhka123kj9rc2h0z07ym30wxk24fq8v0pzmf8gfyg4ywgfj",
16169 "depends": ["dplyr", "ggplot2", "httr", "readr", "tidyr"],
16170 "broken": true
16171 },
16172 "dualKS": {
16173 "name": "dualKS",
16174 "version": "1.30.0",
16175 "sha256": "02j9l73brxa4fgsp9cbd3w7dxllvj744rby21dkfnw2c42rcxpvz",
16176 "depends": ["Biobase", "affy"],
16177 "broken": true
16178 },
16179 "eegc": {
16180 "name": "eegc",
16181 "version": "1.26.0",
16182 "sha256": "0m67zjsq2xzk292rp0hdlj8lbfgci2dsdb5hmn4b591fqawwsqbb",
16183 "depends": ["AnnotationDbi", "clusterProfiler", "DESeq2", "DOSE", "edgeR", "ggplot2", "gplots", "igraph", "limma", "org_Hs_eg_db", "org_Mm_eg_db", "pheatmap", "R_utils", "S4Vectors", "sna", "wordcloud"],
16184 "broken": true
16185 },
16186 "eisa": {
16187 "name": "eisa",
16188 "version": "1.22.0",
16189 "sha256": "0p3s6z7s4d165h4w5g1h273626h5j255c0hyjv5dlrdhr4ign7v6",
16190 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "Category", "DBI", "genefilter", "isa2"],
16191 "broken": true
16192 },
16193 "enrichTF": {
16194 "name": "enrichTF",
16195 "version": "1.18.0",
16196 "sha256": "0lhmlxw7mpb76w2agm25v5qzxgf28wfw2xc0fnlqn2sbbfj295y9",
16197 "depends": ["BiocGenerics", "BSgenome", "clusterProfiler", "GenomeInfoDb", "GenomicRanges", "ggplot2", "ggpubr", "heatmap3", "IRanges", "JASPAR2018", "magrittr", "motifmatchr", "pipeFrame", "R_utils", "rmarkdown", "rtracklayer", "S4Vectors", "TFBSTools"],
16198 "broken": true
16199 },
16200 "ensemblVEP": {
16201 "name": "ensemblVEP",
16202 "version": "1.10.3",
16203 "sha256": "1q9bzs9zqk2xv10jnq7571f8wgyi2l6zk6sgd4sja6fw82lrnmsy",
16204 "depends": ["BiocGenerics", "Biostrings", "GenomicRanges", "VariantAnnotation"],
16205 "broken": true
16206 },
16207 "epigenomix": {
16208 "name": "epigenomix",
16209 "version": "1.48.1",
16210 "sha256": "05wvdfrgj2hpj8qm83k6jfbl4794zcafsh1g0d9bzd882f1n43bs",
16211 "depends": ["Biobase", "BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "MCMCpack", "Rsamtools", "S4Vectors", "SummarizedExperiment", "beadarray"],
16212 "broken": true
16213 },
16214 "epihet": {
16215 "name": "epihet",
16216 "version": "1.13.0",
16217 "sha256": "1p5sgb438yj6h0fv0v17dhz1pl32vai5zcbmgpgagrd5829a6a7r",
16218 "depends": ["data_table", "doParallel", "foreach", "GenomicRanges", "ggplot2", "igraph", "IRanges", "pheatmap", "qvalue", "ReactomePA", "Rtsne", "S4Vectors", "WGCNA"],
16219 "broken": true
16220 },
16221 "erma": {
16222 "name": "erma",
16223 "version": "1.24.1",
16224 "sha256": "1s3b2a0iv3rl3sxq1sbqscq2h2gjz4d3vsg9phhnbk1xdhbhqi4d",
16225 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicFiles", "GenomicRanges", "Homo_sapiens", "IRanges", "S4Vectors", "SummarizedExperiment", "ggplot2", "rtracklayer", "shiny"],
16226 "broken": true
16227 },
16228 "exomeCopy": {
16229 "name": "exomeCopy",
16230 "version": "1.16.0",
16231 "sha256": "09awyyfgs0k639nqrcrbq1k875qlyac1146w4ay6nxgijqy7iv82",
16232 "depends": ["GenomeInfoDb", "GenomicRanges", "IRanges", "Rsamtools"],
16233 "broken": true
16234 },
16235 "exomePeak": {
16236 "name": "exomePeak",
16237 "version": "2.2.2",
16238 "sha256": "03xj0h1cgxzbp2fk830l771jmmcll1bq81xips8hjgng3ywz5m1a",
16239 "depends": ["GenomicAlignments", "GenomicFeatures", "Rsamtools", "rtracklayer"],
16240 "broken": true
16241 },
16242 "exomePeak2": {
16243 "name": "exomePeak2",
16244 "version": "1.14.3",
16245 "sha256": "1hvz18hlvljbv0cmdlxzvsl2ysb5m0c5qq2y8jxzsby3zxlqplph",
16246 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "BSgenome", "DESeq2", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "ggplot2", "IRanges", "magrittr", "mclust", "Rsamtools", "rtracklayer", "S4Vectors", "speedglm", "SummarizedExperiment"],
16247 "broken": true
16248 },
16249 "explorase": {
16250 "name": "explorase",
16251 "version": "1.34.0",
16252 "sha256": "108p864qq8zh4x7p765ygrdkj4r0vm3s2fmi3scswkhcv3vjcjg3",
16253 "depends": ["limma"],
16254 "broken": true
16255 },
16256 "facopy": {
16257 "name": "facopy",
16258 "version": "1.4.1",
16259 "sha256": "07ggz86c48rz8asqvfglrvsimnzh3ii43kzpm8ji6sd43i141650",
16260 "depends": ["DOSE", "FactoMineR", "GO_db", "GOstats", "IRanges", "MASS", "Rgraphviz", "annotate", "coin", "data_table", "facopy_annot", "ggplot2", "graphite", "gridExtra", "igraph", "nnet", "reshape2", "scales"],
16261 "broken": true
16262 },
16263 "factR": {
16264 "name": "factR",
16265 "version": "1.10.0",
16266 "sha256": "131rmjl1awazpapmdag3kcjxjgb5gdxh2xvrvpvzhw45r4nd69v0",
16267 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "RCurl", "S4Vectors", "XML", "crayon", "data_table", "dplyr", "drawProteins", "ggplot2", "pbapply", "purrr", "rlang", "rtracklayer", "stringr", "tibble", "tidyr", "wiggleplotr"],
16268 "broken": true
16269 },
16270 "famat": {
16271 "name": "famat",
16272 "version": "1.18.0",
16273 "sha256": "00fzbqa065z2si0yq4gvici4vfxwa8dwfyx077kc9d7a4z99b2wa",
16274 "depends": ["BiasedUrn", "DT", "GO_db", "KEGGREST", "clusterProfiler", "dplyr", "gprofiler2", "magrittr", "mgcv", "ontologyIndex", "org_Hs_eg_db", "plotly", "rWikiPathways", "reactome_db", "shiny", "shinyBS", "shinydashboard", "stringr", "tidyr"],
16275 "broken": true
16276 },
16277 "farms": {
16278 "name": "farms",
16279 "version": "1.22.0",
16280 "sha256": "1jmx5rajm6fkhx5gfpwh8nsqw0plhfzy1bibvkdf83arxjjr6s59",
16281 "depends": ["Biobase", "MASS", "affy"],
16282 "broken": true
16283 },
16284 "fcoex": {
16285 "name": "fcoex",
16286 "version": "1.13.0",
16287 "sha256": "085r5s5sqrj2701zk5kv3818ksxvxzd76lknzi6bk1svw4d3lsyc",
16288 "depends": ["clusterProfiler", "data_table", "dplyr", "FCBF", "ggplot2", "ggrepel", "igraph", "intergraph", "Matrix", "network", "pathwayPCA", "progress", "scales", "SingleCellExperiment", "sna", "stringr"],
16289 "broken": true
16290 },
16291 "flipflop": {
16292 "name": "flipflop",
16293 "version": "1.8.2",
16294 "sha256": "1v4ihrmw0vphz0k0f37qy5k8zwa5g5cnj4agccjl4mqbvwiq4awh",
16295 "depends": ["GenomicRanges", "IRanges", "Matrix"],
16296 "broken": true
16297 },
16298 "flowCL": {
16299 "name": "flowCL",
16300 "version": "1.8.0",
16301 "sha256": "064946w944gw7l0hizw974i21cahzvfj1xza8f7ay9rx2baz28sh",
16302 "depends": ["Rgraphviz"],
16303 "broken": true
16304 },
16305 "flowFit": {
16306 "name": "flowFit",
16307 "version": "1.8.0",
16308 "sha256": "1fja1d5irh71a3rqdsbw5sb14ss2xmird6vxcps96r6s6rz2bra3",
16309 "depends": ["flowCore", "flowViz", "gplots", "kza", "minpack_lm"],
16310 "broken": true
16311 },
16312 "flowMap": {
16313 "name": "flowMap",
16314 "version": "1.8.0",
16315 "sha256": "0rkdspl9lnasc8axlsx076g14pkgwrlz9nbxy0f1z67w991d823p",
16316 "depends": ["Matrix", "abind", "ade4", "doParallel", "reshape2", "scales"],
16317 "broken": true
16318 },
16319 "flowQ": {
16320 "name": "flowQ",
16321 "version": "1.30.0",
16322 "sha256": "1yz0w0bpv98l319y8dw82qaykg6w70sxpzmhxdckwdqjpixq5sf5",
16323 "depends": ["BiocGenerics", "IRanges", "RColorBrewer", "bioDist", "flowCore", "flowViz", "geneplotter", "lattice", "latticeExtra", "mvoutlier", "outliers", "parody"],
16324 "broken": true
16325 },
16326 "flowQB": {
16327 "name": "flowQB",
16328 "version": "1.14.0",
16329 "sha256": "1swsdqra8w8z27p2mv1q37ydak7rjifxm78h5x6mhv1vfq4faz12",
16330 "depends": ["Biobase", "MASS", "flowCore"],
16331 "broken": true
16332 },
16333 "flowType": {
16334 "name": "flowType",
16335 "version": "2.8.2",
16336 "sha256": "0q7bk8pn71zyzc1m16rqimlyldnfj178k64vg0kw4yiwdjxlgdr4",
16337 "depends": ["BH", "Biobase", "Rcpp", "flowClust", "flowCore", "flowMeans", "flowMerge", "rrcov", "sfsmisc"],
16338 "broken": true
16339 },
16340 "flowUtils": {
16341 "name": "flowUtils",
16342 "version": "1.34.0",
16343 "sha256": "0qba66cfsy8facvdpnl5jf71xwaqs3w6j2z0ph7c39zyng0nibwp",
16344 "depends": ["Biobase", "RUnit", "XML", "corpcor", "flowCore", "flowViz", "graph"],
16345 "broken": true
16346 },
16347 "focalCall": {
16348 "name": "focalCall",
16349 "version": "1.4.0",
16350 "sha256": "1dqk0lda24lkhfsid15c6n121s63zbk6658za5qxqkxdd82z7axf",
16351 "depends": ["CGHcall"],
16352 "broken": true
16353 },
16354 "gCMAP": {
16355 "name": "gCMAP",
16356 "version": "1.14.0",
16357 "sha256": "09dcaq0763kb399wh232n6r1s8qkj0c4zcmpjp6cz08w6n7lchgx",
16358 "depends": ["AnnotationDbi", "Biobase", "Category", "DESeq", "GSEABase", "GSEAlm", "Matrix", "annotate", "genefilter", "limma"],
16359 "broken": true
16360 },
16361 "gCMAPWeb": {
16362 "name": "gCMAPWeb",
16363 "version": "1.10.0",
16364 "sha256": "00qx90gycqqca8b3brkl0bkckn7saqz9z38vinhjxlyaanc9v6ml",
16365 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "GSEABase", "Rook", "annotate", "brew", "gCMAP", "hwriter", "yaml"],
16366 "broken": true
16367 },
16368 "gINTomics": {
16369 "name": "gINTomics",
16370 "version": "1.4.0",
16371 "sha256": "04b1ksazr3l1b1k5rylmswzlfgz5xixgds2n10a1yiqwbbcjkn2p",
16372 "depends": ["AnnotationDbi", "BiocGenerics", "BiocParallel", "ComplexHeatmap", "DT", "GenomicFeatures", "GenomicRanges", "InteractiveComplexHeatmap", "MASS", "MethylMix", "MultiAssayExperiment", "OmnipathR", "RColorBrewer", "ReactomePA", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg38_knownGene", "TxDb_Mmusculus_UCSC_mm10_knownGene", "biomaRt", "callr", "circlize", "clusterProfiler", "dplyr", "edgeR", "ggplot2", "ggridges", "ggtree", "ggvenn", "gtools", "limma", "org_Hs_eg_db", "org_Mm_eg_db", "plotly", "plyr", "randomForest", "reshape2", "shiny", "shiny_gosling", "shinydashboard", "shinyjs", "stringi", "stringr", "visNetwork"],
16373 "broken": true
16374 },
16375 "gQTLBase": {
16376 "name": "gQTLBase",
16377 "version": "1.2.1",
16378 "sha256": "1a1ndjjp2zn1lsfahpvi3xhkdgwl5wk0bdm7kc92aidq50a2db42",
16379 "depends": ["BBmisc", "BatchJobs", "BiocGenerics", "GenomicFiles", "GenomicRanges", "S4Vectors", "bit", "doParallel", "ff", "foreach", "rtracklayer"],
16380 "broken": true
16381 },
16382 "gQTLstats": {
16383 "name": "gQTLstats",
16384 "version": "1.2.0",
16385 "sha256": "1cwri36z85zyyr48dkkl7qkgbx9fpv7y38mbbm470adc7ac56zbv",
16386 "depends": ["AnnotationDbi", "BatchJobs", "Biobase", "BiocGenerics", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment", "VariantAnnotation", "doParallel", "dplyr", "foreach", "gQTLBase", "gam", "ggplot2", "limma", "reshape2", "snpStats"],
16387 "broken": true
16388 },
16389 "gaggle": {
16390 "name": "gaggle",
16391 "version": "1.38.0",
16392 "sha256": "0bl60nca27rkij061h6g16ddlkq29rb1wh5pr2hz87y74pmb8m2w",
16393 "depends": ["RUnit", "graph", "rJava"],
16394 "broken": true
16395 },
16396 "gaia": {
16397 "name": "gaia",
16398 "version": "2.14.0",
16399 "sha256": "099imzsa7pghp7qbxjjnfrqc8zkn25wm5xj9jn40m9as11zxdrsx",
16400 "depends": [],
16401 "broken": true
16402 },
16403 "gaucho": {
16404 "name": "gaucho",
16405 "version": "1.6.0",
16406 "sha256": "1c1aaidhdv9rr2v3q6832q0ajc3g7l4gfx1rhf27kv4pn1j5s23s",
16407 "depends": ["GA", "Rgraphviz", "graph", "png"],
16408 "broken": true
16409 },
16410 "geecc": {
16411 "name": "geecc",
16412 "version": "1.4.0",
16413 "sha256": "00dkp4ldnpadvw6fdva0gg0m843j7i667r0i33c9dsrjfc7k7z8q",
16414 "depends": ["MASS", "gplots"],
16415 "broken": true
16416 },
16417 "genbankr": {
16418 "name": "genbankr",
16419 "version": "1.27.0",
16420 "sha256": "0fv87cf2y10ijlb0g1x9g9wh95qyljqb1c7k1ihbnjcg36xkh8lc",
16421 "depends": ["Biobase", "BiocGenerics", "Biostrings", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "rtracklayer", "S4Vectors", "VariantAnnotation"],
16422 "broken": true
16423 },
16424 "genoCN": {
16425 "name": "genoCN",
16426 "version": "1.59.0",
16427 "sha256": "1fyyq6759p7pz8ajgkn08clpvygm8b25jlf8m3sgrvw62kwcilxl",
16428 "depends": [],
16429 "broken": true
16430 },
16431 "genoset": {
16432 "name": "genoset",
16433 "version": "1.24.0",
16434 "sha256": "0xxh23sdb5qjfh97a2psp70zb54zx40x8501bpp7gzgqbfn1wf7w",
16435 "depends": ["Biobase", "BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "S4Vectors", "SummarizedExperiment"],
16436 "broken": true
16437 },
16438 "genotypeeval": {
16439 "name": "genotypeeval",
16440 "version": "1.0.0",
16441 "sha256": "1clljhqy57yy0ss9700zfnsgnby3dism8z2682xjhzzprg049cx4",
16442 "depends": ["BiocGenerics", "BiocParallel", "GenomeInfoDb", "GenomicRanges", "IRanges", "VariantAnnotation", "ggplot2", "rtracklayer"],
16443 "broken": true
16444 },
16445 "genphen": {
16446 "name": "genphen",
16447 "version": "1.24.0",
16448 "sha256": "1m60qagcxviix4zjzfhvrwchbjq2clss6mivb8q07bcq369yw1b8",
16449 "depends": ["Biostrings", "doParallel", "e1071", "foreach", "ranger", "Rcpp", "rPref", "rstan"],
16450 "broken": true
16451 },
16452 "gespeR": {
16453 "name": "gespeR",
16454 "version": "1.2.0",
16455 "sha256": "0s8lndwwqkkkiyqzi8xpqz6clzjrkmkkrh2f1ch80hvfj83rb89d",
16456 "depends": ["Biobase", "Matrix", "biomaRt", "cellHTS2", "doParallel", "dplyr", "foreach", "ggplot2", "glmnet", "reshape2"],
16457 "broken": true
16458 },
16459 "girafe": {
16460 "name": "girafe",
16461 "version": "1.60.0",
16462 "sha256": "06cfbmr8y8xi3z3dl92w0ljl6w4px2m9nr28yp71i9yswa39j107",
16463 "depends": ["Biobase", "BiocGenerics", "Biostrings", "IRanges", "Rsamtools", "S4Vectors", "ShortRead", "genomeIntervals", "intervals", "pwalign"],
16464 "broken": true
16465 },
16466 "gpart": {
16467 "name": "gpart",
16468 "version": "1.13.0",
16469 "sha256": "1518wjkaw22ckgpwl6si83bhijvib0r0kgs9s4das41f0ygi92sd",
16470 "depends": ["AnnotationDbi", "biomaRt", "data_table", "GenomicRanges", "Homo_sapiens", "igraph", "IRanges", "OrganismDbi", "Rcpp", "TxDb_Hsapiens_UCSC_hg38_knownGene"],
16471 "broken": true
16472 },
16473 "gprege": {
16474 "name": "gprege",
16475 "version": "1.14.0",
16476 "sha256": "0mc8x8faj8pf8zb3mywjscn2rzs7bc0ws507a32r7zl5j8p9rzag",
16477 "depends": [],
16478 "broken": true
16479 },
16480 "gpuMagic": {
16481 "name": "gpuMagic",
16482 "version": "1.23.0",
16483 "sha256": "0skgw46i3419i1bsinhkl12f1jv5gf2bxjr7j7ml5g7azypq61ha",
16484 "depends": ["BiocGenerics", "Deriv", "DescTools", "Rcpp", "digest", "pryr", "stringr"],
16485 "broken": true
16486 },
16487 "granulator": {
16488 "name": "granulator",
16489 "version": "1.16.0",
16490 "sha256": "0ycwj878nyf8vc131781abvpz5dmyhdprflidw6gz5ywz16l7538",
16491 "depends": ["MASS", "cowplot", "dplyr", "dtangle", "e1071", "epiR", "ggplot2", "ggplotify", "limSolve", "magrittr", "nnls", "pheatmap", "purrr", "rlang", "tibble", "tidyr"],
16492 "broken": true
16493 },
16494 "hca": {
16495 "name": "hca",
16496 "version": "1.16.0",
16497 "sha256": "1b2fj61m9h3h8ccly4y1ishr3ivrszpwc5j8rkkxy43nwmmv1r2p",
16498 "depends": ["BiocFileCache", "DT", "digest", "dplyr", "httr", "jsonlite", "miniUI", "readr", "shiny", "tibble", "tidyr"],
16499 "broken": true
16500 },
16501 "hiAnnotator": {
16502 "name": "hiAnnotator",
16503 "version": "1.42.0",
16504 "sha256": "17c6v1w4lqiafvyfswf1p2wijzihawgazflwcviiq7dvx5qb0k6z",
16505 "depends": ["BSgenome", "GenomicRanges", "dplyr", "foreach", "ggplot2", "iterators", "rtracklayer", "scales"],
16506 "broken": true
16507 },
16508 "hiReadsProcessor": {
16509 "name": "hiReadsProcessor",
16510 "version": "1.44.0",
16511 "sha256": "0xql5p20cqhwb5j13l643lshhrns45n4hg15x8lbk24r2zmb8azi",
16512 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomicAlignments", "GenomicRanges", "dplyr", "hiAnnotator", "pwalign", "readxl", "sonicLength"],
16513 "broken": true
16514 },
16515 "hipathia": {
16516 "name": "hipathia",
16517 "version": "3.8.0",
16518 "sha256": "0lplbzcxgb1x5y5rqxr2jbl3a5fg7xh26p2i96mx39mmz8xvwnz0",
16519 "depends": ["AnnotationHub", "DelayedArray", "MetBrewer", "MultiAssayExperiment", "S4Vectors", "SummarizedExperiment", "coin", "dplyr", "ggplot2", "ggpubr", "igraph", "limma", "matrixStats", "preprocessCore", "reshape2", "servr", "tibble", "visNetwork"],
16520 "broken": true
16521 },
16522 "htSeqTools": {
16523 "name": "htSeqTools",
16524 "version": "1.16.0",
16525 "sha256": "1bjbagx6s66fiia71n7ljg5rfc2v22bbp2sk718mf1i9i38c58lm",
16526 "depends": ["BSgenome", "Biobase", "BiocGenerics", "GenomeInfoDb", "GenomicRanges", "IRanges", "MASS"],
16527 "broken": true
16528 },
16529 "hypeR": {
16530 "name": "hypeR",
16531 "version": "2.5.0",
16532 "sha256": "1c4ag9k8f91xyz3b57qrykj8kn467fh31lh41xw7vh1w7kwb0vjb",
16533 "depends": ["BiocStyle", "R6", "dplyr", "ggforce", "ggplot2", "htmltools", "httr", "igraph", "kableExtra", "magrittr", "msigdbr", "openxlsx", "purrr", "reactable", "reshape2", "rlang", "rmarkdown", "scales", "shiny", "stringr", "visNetwork"],
16534 "broken": true
16535 },
16536 "iNETgrate": {
16537 "name": "iNETgrate",
16538 "version": "1.6.0",
16539 "sha256": "02862s4wqzmxhyvbk7d854wlp0whsww7g2w2ngwr5s4n1ri190p0",
16540 "depends": ["BiocStyle", "GenomicRanges", "Homo_sapiens", "Pigengene", "Rfast", "SummarizedExperiment", "WGCNA", "caret", "glmnet", "gplots", "igraph", "matrixStats", "minfi", "survival", "tidyr", "tidyselect"],
16541 "broken": true
16542 },
16543 "iPAC": {
16544 "name": "iPAC",
16545 "version": "1.14.0",
16546 "sha256": "1gzxv6jkn7crylklmnvhm86gczmsr80dmw1a7flaisiiy40k128g",
16547 "depends": ["Biostrings", "gdata", "multtest", "scatterplot3d"],
16548 "broken": true
16549 },
16550 "iPath": {
16551 "name": "iPath",
16552 "version": "1.14.0",
16553 "sha256": "0in8gcs669kcp397z5jishf26prgp86f7w86jwbdmi5j232xb9da",
16554 "depends": ["BiocParallel", "Rcpp", "RcppArmadillo", "ggplot2", "ggpubr", "matrixStats", "mclust", "survival", "survminer"],
16555 "broken": true
16556 },
16557 "imageHTS": {
16558 "name": "imageHTS",
16559 "version": "1.20.0",
16560 "sha256": "1dg8cmrnzlv2qm5lf9771fiir5l0cql6pmfmv0l3037wisdgz1jw",
16561 "depends": ["Biobase", "EBImage", "cellHTS2", "e1071", "hwriter", "vsn"],
16562 "broken": true
16563 },
16564 "inSilicoDb": {
16565 "name": "inSilicoDb",
16566 "version": "2.6.0",
16567 "sha256": "1avxm8qm9rblck94v0aq0na70jfl2cyr9xmbbk27n5hgp1cnaizf",
16568 "depends": ["Biobase", "RCurl", "rjson"],
16569 "broken": true
16570 },
16571 "inSilicoMerging": {
16572 "name": "inSilicoMerging",
16573 "version": "1.14.0",
16574 "sha256": "1xiq66b0vjrcxf4nbmk5mmn1dlxbpa879z04f00w3yz1k7rx6782",
16575 "depends": ["Biobase"],
16576 "broken": true
16577 },
16578 "inveRsion": {
16579 "name": "inveRsion",
16580 "version": "1.18.0",
16581 "sha256": "05jwxwjyvkilfmygf16k3d55ma7s1ya7lyxh8v4pd8gql7v3kllq",
16582 "depends": ["haplo_stats"],
16583 "broken": true
16584 },
16585 "iontree": {
16586 "name": "iontree",
16587 "version": "1.16.0",
16588 "sha256": "1pamgkg85qi3iqqws7a3l8lph428alz1dzf08x309njqz8cbzw91",
16589 "depends": ["RSQLite", "XML", "rJava"],
16590 "broken": true
16591 },
16592 "isomiRs": {
16593 "name": "isomiRs",
16594 "version": "1.36.1",
16595 "sha256": "1bcp2d2bc7fglq1kscxz8mdia6g8p80r3syvfrs42rql76hdvlfi",
16596 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "DEGreport", "DESeq2", "GGally", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "SummarizedExperiment", "broom", "cluster", "cowplot", "dplyr", "ggplot2", "gplots", "gridExtra", "gtools", "limma", "readr", "reshape", "rlang", "stringr", "tibble", "tidyr"],
16597 "broken": true
16598 },
16599 "iterClust": {
16600 "name": "iterClust",
16601 "version": "1.24.0",
16602 "sha256": "0k2hcc7g4ynd9jrk8f286y6gwc4bfs4bnfs8qpj2i8zamwdaldng",
16603 "depends": ["Biobase", "cluster"],
16604 "broken": true
16605 },
16606 "iteremoval": {
16607 "name": "iteremoval",
16608 "version": "1.15.1",
16609 "sha256": "0bwl8lzxvf5azwyacv9x16l4kyi8l00xny2s83gp2kng5gyz8602",
16610 "depends": ["GenomicRanges", "ggplot2", "magrittr", "SummarizedExperiment"],
16611 "broken": true
16612 },
16613 "jmosaics": {
16614 "name": "jmosaics",
16615 "version": "1.10.0",
16616 "sha256": "1q67ylrgc2abny2wxgsl1cni225inar1dhim0psrbrf5ik77kgmk",
16617 "depends": ["mosaics"],
16618 "broken": true
16619 },
16620 "joda": {
16621 "name": "joda",
16622 "version": "1.18.0",
16623 "sha256": "0fjbxczwkn8f4p0h8dgi3vfn4qf9a650wmp01q20j7f0jsmmb06x",
16624 "depends": ["RBGL", "bgmm"],
16625 "broken": true
16626 },
16627 "lapmix": {
16628 "name": "lapmix",
16629 "version": "1.72.0",
16630 "sha256": "19bhb7654h8pivsf3qxv518zp02ijbvlhkb4d93nyanns3g7zqas",
16631 "depends": ["Biobase"],
16632 "broken": true
16633 },
16634 "logitT": {
16635 "name": "logitT",
16636 "version": "1.28.0",
16637 "sha256": "1qbimjjl5xv5h30r74bd86dg10djajb01qav6gp95l6f59fx2j1q",
16638 "depends": ["affy"],
16639 "broken": true
16640 },
16641 "lol": {
16642 "name": "lol",
16643 "version": "1.18.0",
16644 "sha256": "0dc3ga7yalzfngh3y33sa4bchhbxgndkls3vdxh4yzcsdvk60i1f",
16645 "depends": ["Matrix", "penalized"],
16646 "broken": true
16647 },
16648 "lute": {
16649 "name": "lute",
16650 "version": "1.4.0",
16651 "sha256": "1f1i083aqhls9xf7hynb1xlk5r9ksm5jzy9l971ikh97jyxfwx22",
16652 "depends": ["Biobase", "BiocGenerics", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "dplyr", "ggplot2", "scran"],
16653 "broken": true
16654 },
16655 "mAPKL": {
16656 "name": "mAPKL",
16657 "version": "1.2.0",
16658 "sha256": "1k1yxxj6371sagiy63fl1dh8d71cqg6gvx8pkjy3ahp1hbh45b6l",
16659 "depends": ["AnnotationDbi", "Biobase", "apcluster", "clusterSim", "e1071", "igraph", "limma", "multtest", "parmigene", "reactome_db"],
16660 "broken": true
16661 },
16662 "mCSEA": {
16663 "name": "mCSEA",
16664 "version": "1.28.0",
16665 "sha256": "0j1yrdl9im2s8xfzb57km43v2613k8h6hq29ypxqm6g4x95nhpqf",
16666 "depends": ["GenomicFeatures", "GenomicRanges", "Gviz", "Homo_sapiens", "IRanges", "S4Vectors", "SummarizedExperiment", "biomaRt", "fgsea", "ggplot2", "limma", "mCSEAdata"],
16667 "broken": true
16668 },
16669 "mQTL_NMR": {
16670 "name": "mQTL.NMR",
16671 "version": "1.4.0",
16672 "sha256": "0flb1lqsq7ldicidag20icnhmds2qr85yrbjsv4h06klggq2vjvg",
16673 "depends": ["MASS", "outliers", "qtl"],
16674 "broken": true
16675 },
16676 "maanova": {
16677 "name": "maanova",
16678 "version": "1.40.0",
16679 "sha256": "112hbyfw18dshshsmbaylwra169w6bbwwqql3d96s0in1fl20mdl",
16680 "depends": ["Biobase"],
16681 "broken": true
16682 },
16683 "macat": {
16684 "name": "macat",
16685 "version": "1.44.1",
16686 "sha256": "061y6a1q7c9r9a01hy6l86wc085f530y7hjw7asx506cf91ifwdk",
16687 "depends": ["Biobase", "annotate"],
16688 "broken": true
16689 },
16690 "maigesPack": {
16691 "name": "maigesPack",
16692 "version": "1.34.0",
16693 "sha256": "08pszyq03f1vjgirq0zcv31m4c0acdbfh622qiw0x0w1gz6plm0g",
16694 "depends": ["convert", "graph", "limma", "marray"],
16695 "broken": true
16696 },
16697 "manta": {
16698 "name": "manta",
16699 "version": "1.16.0",
16700 "sha256": "0j6zll7b1qqdnydg59hywargw6bivry3cx5m2wpj79wn673kib3c",
16701 "depends": ["Hmisc", "caroline", "edgeR"],
16702 "broken": true
16703 },
16704 "mbOmic": {
16705 "name": "mbOmic",
16706 "version": "1.3.0",
16707 "sha256": "079qs5apyqli7h16c6drmhibmc356rnllxks5ddfnnq7hdzmhdbw",
16708 "depends": ["cluster", "clusterSim", "data_table", "doParallel", "igraph", "psych", "visNetwork", "WGCNA"],
16709 "broken": true
16710 },
16711 "mcaGUI": {
16712 "name": "mcaGUI",
16713 "version": "1.18.0",
16714 "sha256": "0rxhs059z0l6lal33m78hkp73k46c2pdy0nn5lxwxr590fglvh0f",
16715 "depends": ["MASS", "OTUbase", "bpca", "foreign", "lattice", "proto", "vegan"],
16716 "broken": true
16717 },
16718 "mdgsa": {
16719 "name": "mdgsa",
16720 "version": "1.2.0",
16721 "sha256": "05lqj7d4464z976w4rvnzpv1abihq1fpxhcl2zyg5izwqpq6ga9r",
16722 "depends": ["AnnotationDbi", "DBI", "GO_db", "KEGG_db", "Matrix", "cluster"],
16723 "broken": true
16724 },
16725 "metaArray": {
16726 "name": "metaArray",
16727 "version": "1.48.0",
16728 "sha256": "1zx9ymjqh851r33jv7fpyy4319fqi2kgjgxxbgpq1xl6cfkglr4h",
16729 "depends": ["Biobase", "MergeMaid"],
16730 "broken": true
16731 },
16732 "metaX": {
16733 "name": "metaX",
16734 "version": "1.0.3",
16735 "sha256": "1v4519spcgvc2kc1cah5gmfjnx09zlam8p8d8m6wkw0ba600vv7b",
16736 "depends": ["BBmisc", "CAMERA", "DiffCorr", "Nozzle_R1", "RColorBrewer", "RCurl", "SSPA", "VennDiagram", "ape", "boot", "bootstrap", "caret", "data_table", "doParallel", "dplyr", "faahKO", "ggplot2", "igraph", "impute", "lattice", "missForest", "pROC", "pcaMethods", "pheatmap", "pls", "plyr", "preprocessCore", "reshape2", "scatterplot3d", "stringr", "vsn", "xcms"],
16737 "broken": true
16738 },
16739 "metabolomicsWorkbenchR": {
16740 "name": "metabolomicsWorkbenchR",
16741 "version": "1.18.0",
16742 "sha256": "1yk4ddcwqi72aq1jr7gj9c862g6fy82i0s7rx8a6y8nfigd1nvqd",
16743 "depends": ["MultiAssayExperiment", "SummarizedExperiment", "data_table", "httr", "jsonlite", "struct"],
16744 "broken": true
16745 },
16746 "metagene": {
16747 "name": "metagene",
16748 "version": "2.2.1",
16749 "sha256": "1l0zfhk4gnm3gvy24igismpb3j3m6vh4mb4q41cfrpkmxn2zlvaq",
16750 "depends": ["BiocParallel", "DBChIP", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "IRanges", "R6", "Rsamtools", "ggplot2", "gplots", "rtracklayer"],
16751 "broken": true
16752 },
16753 "metagenomeFeatures": {
16754 "name": "metagenomeFeatures",
16755 "version": "1.0.0",
16756 "sha256": "1lbb505s976j2jxxi7snhd1yahcs0ca9qnicq12b5jmp3ki1br9k",
16757 "depends": ["Biobase", "Biostrings", "RSQLite", "ShortRead", "dplyr", "lattice", "lazyeval", "magrittr", "stringr"],
16758 "broken": true
16759 },
16760 "metaseqR": {
16761 "name": "metaseqR",
16762 "version": "1.10.0",
16763 "sha256": "1gy5ywrxqwd8lizbj9lk6qck6zwk670j5y2f0ayz6xvkki4vab97",
16764 "depends": ["DESeq", "EDASeq", "NBPSeq", "NOISeq", "baySeq", "biomaRt", "brew", "corrplot", "edgeR", "gplots", "limma", "log4r", "qvalue", "rjson", "vsn"],
16765 "broken": true
16766 },
16767 "metavizr": {
16768 "name": "metavizr",
16769 "version": "1.21.0",
16770 "sha256": "1d88f854sn5m2pklsyvkmq05yzjanxlnkz5gpzban62qq1mpvims",
16771 "depends": ["Biobase", "data_table", "digest", "epivizr", "epivizrData", "epivizrServer", "epivizrStandalone", "GenomeInfoDb", "httr", "metagenomeSeq", "phyloseq", "vegan"],
16772 "broken": true
16773 },
16774 "methVisual": {
16775 "name": "methVisual",
16776 "version": "1.22.0",
16777 "sha256": "1kcqhlv0lmr7wlkxjl9qqv2676pwna3i4w5xpm4inwgcb892zgjm",
16778 "depends": ["Biostrings", "IRanges", "ca", "gridBase", "gsubfn", "plotrix", "sqldf"],
16779 "broken": true
16780 },
16781 "methyAnalysis": {
16782 "name": "methyAnalysis",
16783 "version": "1.12.2",
16784 "sha256": "0m4qx7q1zm3g4m8kwjz7nvf93891bmbvac0n8wpgniap669af0yk",
16785 "depends": ["AnnotationDbi", "Biobase", "BiocGenerics", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "Gviz", "IRanges", "VariantAnnotation", "annotate", "biomaRt", "genefilter", "genoset", "lumi", "methylumi", "org_Hs_eg_db", "rtracklayer"],
16786 "broken": true
16787 },
16788 "mfa": {
16789 "name": "mfa",
16790 "version": "1.30.0",
16791 "sha256": "0zgwf9sxgn0xb103f94zkd96264fjb7cshbwmbardlz74wvrjd87",
16792 "depends": ["Biobase", "MCMCglmm", "MCMCpack", "Rcpp", "coda", "dplyr", "ggmcmc", "ggplot2", "magrittr", "tibble"],
16793 "broken": true
16794 },
16795 "miRmine": {
16796 "name": "miRmine",
16797 "version": "1.22.0",
16798 "sha256": "1d0ni3lavpiv2qzwlmrsjym75cip3i9q1bg9rwa04h61rz2smylg",
16799 "depends": ["SummarizedExperiment"],
16800 "broken": true
16801 },
16802 "microSTASIS": {
16803 "name": "microSTASIS",
16804 "version": "1.8.0",
16805 "sha256": "1ixmd0srjndx43zsl183qzc1r4mhvm6cm2h5yshvijj4lhhgmfli",
16806 "depends": ["BiocParallel", "TreeSummarizedExperiment", "ggplot2", "ggside", "rlang", "stringr"],
16807 "broken": true
16808 },
16809 "microbiomeMarker": {
16810 "name": "microbiomeMarker",
16811 "version": "1.12.2",
16812 "sha256": "0fkm2sqqsaa8kkdyp0j3zwx8lijgkgk4s45sir3s37an9yai2bp4",
16813 "depends": ["ALDEx2", "ANCOMBC", "Biobase", "BiocGenerics", "BiocParallel", "Biostrings", "ComplexHeatmap", "DESeq2", "IRanges", "MASS", "S4Vectors", "biomformat", "caret", "coin", "dplyr", "edgeR", "ggplot2", "ggsignif", "ggtree", "limma", "magrittr", "metagenomeSeq", "multtest", "pROC", "patchwork", "phyloseq", "plotROC", "purrr", "rlang", "tibble", "tidyr", "tidytree", "vegan", "yaml"],
16814 "broken": true
16815 },
16816 "mitoODE": {
16817 "name": "mitoODE",
16818 "version": "1.8.0",
16819 "sha256": "1rbxppzwmlrfyzcsa5b0biqm79qyv9662dh16zzp3frz56325kzy",
16820 "depends": ["KernSmooth", "MASS", "minpack_lm", "mitoODEdata"],
16821 "broken": true
16822 },
16823 "mmnet": {
16824 "name": "mmnet",
16825 "version": "1.8.1",
16826 "sha256": "0ppcy11xnn593xig8gwz79vsbkdi3f5aai58zdhr59w52y2dafia",
16827 "depends": ["Biobase", "KEGGREST", "Matrix", "RCurl", "RJSONIO", "XML", "flexmix", "ggplot2", "igraph", "plyr", "reshape2", "stringr"],
16828 "broken": true
16829 },
16830 "motifRG": {
16831 "name": "motifRG",
16832 "version": "1.14.0",
16833 "sha256": "1v9zm5629k2lcqbbgw8bwflvbircyxkfavbkvmbd212kgwcng8vn",
16834 "depends": ["BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "Biostrings", "IRanges", "XVector", "seqLogo"],
16835 "broken": true
16836 },
16837 "multiOmicsViz": {
16838 "name": "multiOmicsViz",
16839 "version": "1.24.0",
16840 "sha256": "129k094ml403w25k3kipzbavx78p14jxq40a8d733qyqp8mcnlrs",
16841 "depends": ["doParallel", "foreach", "SummarizedExperiment"],
16842 "broken": true
16843 },
16844 "multiSight": {
16845 "name": "multiSight",
16846 "version": "1.7.0",
16847 "sha256": "1v2ml1qh250lidm5a0xw4b3xbxd2as86p703qn5s8m1xi6l89b9c",
16848 "depends": ["anyLib", "biosigner", "caret", "clusterProfiler", "config", "DESeq2", "dplyr", "DT", "easyPubMed", "enrichplot", "ggnewscale", "golem", "htmltools", "igraph", "infotheo", "metap", "mixOmics", "networkD3", "ppcor", "R6", "ReactomePA", "rmarkdown", "rWikiPathways", "shiny", "shinydashboard", "stringr"],
16849 "broken": true
16850 },
16851 "mvGST": {
16852 "name": "mvGST",
16853 "version": "1.4.0",
16854 "sha256": "1yi8558lkqfrmxgighb5v8q12gwqlbs2ds610fgf8ggrdn84bzq8",
16855 "depends": ["AnnotationDbi", "GO_db", "GOstats", "Rgraphviz", "annotate", "gProfileR", "graph", "stringr", "topGO"],
16856 "broken": true
16857 },
16858 "nanotatoR": {
16859 "name": "nanotatoR",
16860 "version": "1.18.0",
16861 "sha256": "1nnh4g4b7k6mp922pr52sxlrh6wvfyx7jhckmwrd12l1yjq010pb",
16862 "depends": ["AnnotationDbi", "curl", "dplyr", "GenomicRanges", "hash", "httr", "knitr", "openxlsx", "org_Hs_eg_db", "rentrez", "rlang", "stringr", "testthat", "tidyverse", "XML"],
16863 "broken": true
16864 },
16865 "neaGUI": {
16866 "name": "neaGUI",
16867 "version": "1.8.0",
16868 "sha256": "1xms5k8zzbk31sj0f92rsqjv40vcqy89pmy8z3j0336iascqbx9l",
16869 "depends": ["hwriter"],
16870 "broken": true
16871 },
16872 "nem": {
16873 "name": "nem",
16874 "version": "2.44.0",
16875 "sha256": "1bkq622jyrfn0v4wyw5ycxmri8kyils4wznsz26ki3awff34lq3h",
16876 "depends": ["RBGL", "RColorBrewer", "Rgraphviz", "boot", "e1071", "graph", "limma", "plotrix", "statmod"],
16877 "broken": true
16878 },
16879 "netDx": {
16880 "name": "netDx",
16881 "version": "1.16.0",
16882 "sha256": "00ghcj5hzb06pi9aj2rdnasyqgqnvr9qjb0m6b0476yv2mx5x24k",
16883 "depends": ["BiocFileCache", "GenomeInfoDb", "GenomicRanges", "IRanges", "MultiAssayExperiment", "RColorBrewer", "ROCR", "Rtsne", "S4Vectors", "bigmemory", "combinat", "doParallel", "foreach", "ggplot2", "glmnet", "httr", "igraph", "plotrix", "pracma", "rappdirs", "reshape2"],
16884 "broken": true
16885 },
16886 "netOmics": {
16887 "name": "netOmics",
16888 "version": "1.8.0",
16889 "sha256": "03nyjvcr2hldsfifj0dix1bc79z05i9x2hgc5z2g9hd1jyijljyd",
16890 "depends": ["AnnotationDbi", "dplyr", "ggplot2", "GO_db", "gprofiler2", "igraph", "magrittr", "minet", "purrr", "RandomWalkRestartMH", "tibble", "tidyr"],
16891 "broken": true
16892 },
16893 "netZooR": {
16894 "name": "netZooR",
16895 "version": "1.10.0",
16896 "sha256": "11rq1lhxhwij6wik087wmnzk8aswhmmf3yzcpiljxbk8szsm8np7",
16897 "depends": ["AnnotationDbi", "Biobase", "GO_db", "GOstats", "MASS", "Matrix", "RCy3", "STRINGdb", "assertthat", "data_table", "doParallel", "dplyr", "foreach", "ggdendro", "ggplot2", "gplots", "igraph", "matrixStats", "matrixcalc", "nnet", "org_Hs_eg_db", "pandaR", "penalized", "reshape", "reshape2", "reticulate", "tidyr", "vegan", "viridisLite", "yarn"],
16898 "broken": true
16899 },
16900 "netbenchmark": {
16901 "name": "netbenchmark",
16902 "version": "1.2.0",
16903 "sha256": "10s8xsisjp9sj9dl67bgn94ipm6a6kpqli3pvjdpxkmvjkg400kg",
16904 "depends": ["GeneNet", "Matrix", "Rcpp", "c3net", "corpcor", "fdrtool", "grndata", "minet", "pracma", "randomForest"],
16905 "broken": true
16906 },
16907 "netbiov": {
16908 "name": "netbiov",
16909 "version": "1.4.0",
16910 "sha256": "1h3986kfi516xlw675cq901ls9v7rj5rr0ls5lny21wd439n2avf",
16911 "depends": ["igraph"],
16912 "broken": true
16913 },
16914 "netboxr": {
16915 "name": "netboxr",
16916 "version": "1.9.0",
16917 "sha256": "1brnm60745s2axls4p6qcxipjjr3ph9ijg1q604fgm42rf6i7qzm",
16918 "depends": ["clusterProfiler", "data_table", "DT", "gplots", "igraph", "jsonlite", "plyr", "RColorBrewer"],
16919 "broken": true
16920 },
16921 "networkBMA": {
16922 "name": "networkBMA",
16923 "version": "1.12.0",
16924 "sha256": "0zkf10iqiabsln1jxq0sypr43mrw6k82l3pdp5bg9kcv0bqqqy5k",
16925 "depends": ["BMA", "Rcpp", "RcppArmadillo", "RcppEigen"],
16926 "broken": true
16927 },
16928 "nudge": {
16929 "name": "nudge",
16930 "version": "1.36.0",
16931 "sha256": "1px6hnda7hp7yx9imkl8xq8m772csd2qic0kq5bqwshk5qdvfhw7",
16932 "depends": [],
16933 "broken": true
16934 },
16935 "oneChannelGUI": {
16936 "name": "oneChannelGUI",
16937 "version": "1.36.0",
16938 "sha256": "0r5y531y4niy9gh64n7nk8a0xcj8lyg36axhcjx116ycsqa00x5h",
16939 "depends": ["Biobase", "Biostrings", "IRanges", "Rsamtools", "affylmGUI", "chimera", "siggenes", "tkWidgets", "tkrplot"],
16940 "broken": true
16941 },
16942 "oneSENSE": {
16943 "name": "oneSENSE",
16944 "version": "1.20.0",
16945 "sha256": "1lzb8i3frv3va2q28glwnjwszrynhky5y8fx10q4h52p2wqgc4v3",
16946 "depends": ["flowCore", "gplots", "plotly", "Rtsne", "scatterplot3d", "shiny", "shinyFiles", "webshot"],
16947 "broken": true
16948 },
16949 "ontoCAT": {
16950 "name": "ontoCAT",
16951 "version": "1.22.0",
16952 "sha256": "03vy4210m31jzhhhbhw3ixhm1lji4qil2zp0ckmyh3xb8m8s8fzl",
16953 "depends": ["rJava"],
16954 "broken": true
16955 },
16956 "openPrimeRui": {
16957 "name": "openPrimeRui",
16958 "version": "1.26.0",
16959 "sha256": "0w00ya6xb70am000hybrxgcq8bpd950w36n01v4l0pfmfcvqd9fa",
16960 "depends": ["DT", "openPrimeR", "rmarkdown", "shiny", "shinyBS", "shinyjs"],
16961 "broken": true
16962 },
16963 "oppti": {
16964 "name": "oppti",
16965 "version": "1.21.0",
16966 "sha256": "0v7hy9qy3mjx8sj3rvs23sy38r8nfgr4d4na4k8h65y2mi8xfqnp",
16967 "depends": ["RColorBrewer", "devtools", "ggplot2", "knitr", "limma", "parallelDist", "pheatmap", "reshape"],
16968 "broken": true
16969 },
16970 "pareg": {
16971 "name": "pareg",
16972 "version": "1.8.0",
16973 "sha256": "1b9vvn1ppw1vbfmkzkbd6b01pkqnsknbrjv1js983dpjv23x6xlb",
16974 "depends": ["DOSE", "Matrix", "basilisk", "devtools", "doFuture", "doRNG", "dplyr", "foreach", "future", "ggplot2", "ggraph", "ggrepel", "glue", "hms", "igraph", "keras", "logger", "magrittr", "nloptr", "progress", "proxy", "purrr", "reticulate", "rlang", "stringr", "tensorflow", "tfprobability", "tibble", "tidygraph", "tidyr"],
16975 "broken": true
16976 },
16977 "pathVar": {
16978 "name": "pathVar",
16979 "version": "1.0.1",
16980 "sha256": "1ixraifr8d86m9rdg38d6kfzmgghjxasgi3abb1i8knjyfwrc05v",
16981 "depends": ["EMT", "Matching", "data_table", "ggplot2", "gridExtra", "mclust"],
16982 "broken": true
16983 },
16984 "paxtoolsr": {
16985 "name": "paxtoolsr",
16986 "version": "1.4.6",
16987 "sha256": "170gm5qxlsz2dv249q16shpj0xm9y7rp3rpn9ij6r2c5d3xn8i21",
16988 "depends": ["R_utils", "XML", "data_table", "httr", "igraph", "plyr", "rJava", "rjson"],
16989 "broken": true
16990 },
16991 "pcaGoPromoter": {
16992 "name": "pcaGoPromoter",
16993 "version": "1.14.0",
16994 "sha256": "1w0cpakxlm8dx6z3j844xmkz3dawiaschrjcjlkqjv9ay8vfkhz8",
16995 "depends": ["AnnotationDbi", "Biostrings", "ellipse"],
16996 "broken": true
16997 },
16998 "pcot2": {
16999 "name": "pcot2",
17000 "version": "1.38.0",
17001 "sha256": "1ycsbry5srf1msq4vcvv0q34lgzkwadh7k1pgwv963i567i4lx3b",
17002 "depends": ["Biobase", "amap"],
17003 "broken": true
17004 },
17005 "pcxn": {
17006 "name": "pcxn",
17007 "version": "2.26.0",
17008 "sha256": "13gahdsvz7ss3chcvqmdyrnw31rcgiplqg7awrn930drwljlimqk",
17009 "depends": ["pcxnData", "pheatmap"],
17010 "broken": true
17011 },
17012 "pdmclass": {
17013 "name": "pdmclass",
17014 "version": "1.42.0",
17015 "sha256": "1f4zrxbyk49hm0cxp0g1786cwc7g1k5z6v3hn2z66m7rbapz8afy",
17016 "depends": ["Biobase", "fibroEset", "mda"],
17017 "broken": true
17018 },
17019 "perturbatr": {
17020 "name": "perturbatr",
17021 "version": "1.13.0",
17022 "sha256": "0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31",
17023 "depends": ["assertthat", "diffusr", "doParallel", "dplyr", "foreach", "formula_tools", "ggplot2", "igraph", "lazyeval", "lme4", "magrittr", "rlang", "scales", "tibble", "tidyr"],
17024 "broken": true
17025 },
17026 "phemd": {
17027 "name": "phemd",
17028 "version": "1.18.0",
17029 "sha256": "174jp26insq2mwf9yw9bls4i9b2a8vccfkrg2h1dzvyyk513bi83",
17030 "depends": ["Biobase", "BiocGenerics", "cluster", "cowplot", "destiny", "ggplot2", "igraph", "maptree", "monocle", "phateR", "pheatmap", "pracma", "RANN", "RColorBrewer", "reticulate", "Rtsne", "S4Vectors", "scatterplot3d", "Seurat", "SingleCellExperiment", "SummarizedExperiment", "transport", "VGAM"],
17031 "broken": true
17032 },
17033 "phenoDist": {
17034 "name": "phenoDist",
17035 "version": "1.18.0",
17036 "sha256": "0kjsdgvr5kmrnn7mjzphk5r6irgjv5cfgmrd4yddprbmmln39avn",
17037 "depends": ["e1071", "imageHTS"],
17038 "broken": true
17039 },
17040 "pint": {
17041 "name": "pint",
17042 "version": "1.20.0",
17043 "sha256": "19q21b3zdn4adx49zn88z69xz3mqza58xdhig3zicn9s0g21bfz4",
17044 "depends": ["Matrix", "mvtnorm"],
17045 "broken": true
17046 },
17047 "pkgDepTools": {
17048 "name": "pkgDepTools",
17049 "version": "1.36.0",
17050 "sha256": "1v2fsax49wklwdmgxp9pjyp18cbj2rsg7yd68mwr2amlihgvmsp1",
17051 "depends": ["RBGL", "graph"],
17052 "broken": true
17053 },
17054 "plateCore": {
17055 "name": "plateCore",
17056 "version": "1.28.0",
17057 "sha256": "1v7shvjnav930grswbixj8fyabmamsgry5g5is3sf9ymp9r8gh5x",
17058 "depends": ["Biobase", "MASS", "flowCore", "flowStats", "flowViz", "lattice", "latticeExtra", "robustbase"],
17059 "broken": true
17060 },
17061 "plethy": {
17062 "name": "plethy",
17063 "version": "1.8.0",
17064 "sha256": "1skaqws1yb8n8li4daprq4x8vrbyykm3fk6pzwx7iyr3nf2r2zz5",
17065 "depends": ["Biobase", "BiocGenerics", "DBI", "IRanges", "RColorBrewer", "RSQLite", "S4Vectors", "Streamer", "ggplot2", "plyr", "reshape2"],
17066 "broken": true
17067 },
17068 "plrs": {
17069 "name": "plrs",
17070 "version": "1.10.0",
17071 "sha256": "1f2dlgcbpfrn5za2z7nf1y8jzrcb5hzb3gix18nyqmz9syg57zha",
17072 "depends": ["Biobase", "BiocGenerics", "CGHbase", "Rcsdp", "ic_infer", "marray", "quadprog"],
17073 "broken": true
17074 },
17075 "plw": {
17076 "name": "plw",
17077 "version": "1.30.0",
17078 "sha256": "190bccvxhdgp3ah9vzdpjddb33ck38r5x4gw1f8vwxh0mw79vf9c",
17079 "depends": ["MASS", "affy"],
17080 "broken": true
17081 },
17082 "polyester": {
17083 "name": "polyester",
17084 "version": "1.6.0",
17085 "sha256": "0if2rbgbfc3ghz5mnmpmpv6rq63qjm3l16gmlr493vfrpxdzclnv",
17086 "depends": ["Biostrings", "IRanges", "S4Vectors", "limma", "logspline"],
17087 "broken": true
17088 },
17089 "ppiStats": {
17090 "name": "ppiStats",
17091 "version": "1.36.0",
17092 "sha256": "1s5xv565w924g71qaxgmhfszrkqs3arzi8l0vzcz446r2pgm6d32",
17093 "depends": ["Biobase", "Category", "RColorBrewer", "ScISI", "graph", "lattice", "ppiData"],
17094 "broken": true
17095 },
17096 "prada": {
17097 "name": "prada",
17098 "version": "1.46.0",
17099 "sha256": "0ak21586bbkbpwji1pcbr44dlwyhslscrqm2y172310xbxm0sqbg",
17100 "depends": ["Biobase", "BiocGenerics", "MASS", "RColorBrewer", "rrcov"],
17101 "broken": true
17102 },
17103 "predictionet": {
17104 "name": "predictionet",
17105 "version": "1.16.0",
17106 "sha256": "1q7nl11kvh2rl5rzb4qnq5ckdrdkna0arfnjmki35lr8hyh65id0",
17107 "depends": ["MASS", "RBGL", "igraph", "penalized"],
17108 "broken": true
17109 },
17110 "proBatch": {
17111 "name": "proBatch",
17112 "version": "1.14.0",
17113 "sha256": "079dh61v1dmsasrh5sn6sn1rgi34mavxa1sc1y8x6wqjwabm4w1j",
17114 "depends": ["Biobase", "corrplot", "data_table", "dplyr", "ggfortify", "ggplot2", "lazyeval", "lubridate", "magrittr", "pheatmap", "preprocessCore", "purrr", "pvca", "RColorBrewer", "reshape2", "rlang", "scales", "sva", "tibble", "tidyr", "viridis", "wesanderson", "WGCNA"],
17115 "broken": true
17116 },
17117 "proFIA": {
17118 "name": "proFIA",
17119 "version": "1.23.0",
17120 "sha256": "0y08vj401f45dvgxjwjx94hvd0rk1wljk8n1irpkdafg24gv4fvj",
17121 "depends": ["Biobase", "BiocParallel", "minpack_lm", "missForest", "pracma", "ropls", "xcms"],
17122 "broken": true
17123 },
17124 "profileplyr": {
17125 "name": "profileplyr",
17126 "version": "1.24.1",
17127 "sha256": "02y423r6g9bi7g5izvrwmxmrxrkyah8496pdrm1xhq97i9k8pdba",
17128 "depends": ["BiocGenerics", "BiocParallel", "ChIPseeker", "ComplexHeatmap", "EnrichedHeatmap", "GenomeInfoDb", "GenomicFeatures", "GenomicRanges", "IRanges", "R_utils", "Rsamtools", "S4Vectors", "SummarizedExperiment", "TxDb_Hsapiens_UCSC_hg19_knownGene", "TxDb_Hsapiens_UCSC_hg38_knownGene", "TxDb_Mmusculus_UCSC_mm10_knownGene", "TxDb_Mmusculus_UCSC_mm9_knownGene", "circlize", "dplyr", "ggplot2", "magrittr", "org_Hs_eg_db", "org_Mm_eg_db", "pheatmap", "rGREAT", "rjson", "rlang", "rtracklayer", "soGGi", "tidyr", "tiff"],
17129 "broken": true
17130 },
17131 "prot2D": {
17132 "name": "prot2D",
17133 "version": "1.8.0",
17134 "sha256": "0pmsl550wvxnqx5zbj8b6lhvlb2bcmvi3xxx66x8r1sz3cdy3l7h",
17135 "depends": ["Biobase", "MASS", "Mulcom", "fdrtool", "impute", "limma", "qvalue", "samr", "st"],
17136 "broken": true
17137 },
17138 "proteasy": {
17139 "name": "proteasy",
17140 "version": "1.2.0",
17141 "sha256": "1mfk69k44krdj4wp6xpil391j9jrppyx1crvra525p8hahzc2d5m",
17142 "depends": ["AnnotationFilter", "data_table", "EnsDb_Hsapiens_v86", "EnsDb_Mmusculus_v79", "EnsDb_Rnorvegicus_v79", "ensembldb", "Rcpi", "stringr"],
17143 "broken": true
17144 },
17145 "proteoQC": {
17146 "name": "proteoQC",
17147 "version": "1.6.0",
17148 "sha256": "15raykmw19k4yn4jppw4lqwgarr8b7sfsvhcif49xvw7k1dwj5ys",
17149 "depends": ["MSnbase", "Nozzle_R1", "Rcpp", "VennDiagram", "XML", "ggplot2", "plyr", "rTANDEM", "reshape2", "seqinr"],
17150 "broken": true
17151 },
17152 "psygenet2r": {
17153 "name": "psygenet2r",
17154 "version": "1.36.0",
17155 "sha256": "1khjid5lkkn5qpnk9adw1in4km41q067mj5r5yqs2iz5hv4vx6xv",
17156 "depends": ["BgeeDB", "Biobase", "GO_db", "RCurl", "biomaRt", "ggplot2", "igraph", "labeling", "reshape2", "stringr", "topGO"],
17157 "broken": true
17158 },
17159 "pulsedSilac": {
17160 "name": "pulsedSilac",
17161 "version": "1.9.1",
17162 "sha256": "1zb8xzs9h4rcrnmsfvrwb1qixn3jbnzxdwqgdrb82hgmxabmajlb",
17163 "depends": ["cowplot", "ggplot2", "ggridges", "MuMIn", "R_utils", "robustbase", "S4Vectors", "SummarizedExperiment", "UpSetR"],
17164 "broken": true
17165 },
17166 "pwOmics": {
17167 "name": "pwOmics",
17168 "version": "1.2.0",
17169 "sha256": "0vlr71mhch716xl2i0366pxjkawci0g2imvfhsqinv5gd92m6hpq",
17170 "depends": ["AnnotationDbi", "AnnotationHub", "Biobase", "BiocGenerics", "GenomicRanges", "STRINGdb", "biomaRt", "data_table", "gplots", "igraph", "rBiopaxParser"],
17171 "broken": true
17172 },
17173 "pwrEWAS": {
17174 "name": "pwrEWAS",
17175 "version": "1.14.0",
17176 "sha256": "1913h2syad9mfspxjvmrwm0mrcklbcl89lj04rn5x0xgfk8rk58a",
17177 "depends": ["abind", "BiocManager", "CpGassoc", "doParallel", "doSNOW", "foreach", "genefilter", "ggplot2", "limma", "pwrEWAS_data", "shiny", "shinyBS", "shinyWidgets", "truncnorm"],
17178 "broken": true
17179 },
17180 "qckitfastq": {
17181 "name": "qckitfastq",
17182 "version": "1.24.0",
17183 "sha256": "16lcg42jclw24nk1k9bxy7vm3qj5vyqny99b0ixm0ilda6wkl1f7",
17184 "depends": ["RSeqAn", "Rcpp", "data_table", "dplyr", "ggplot2", "magrittr", "reshape2", "rlang", "seqTools", "zlibbioc"],
17185 "broken": true
17186 },
17187 "qrqc": {
17188 "name": "qrqc",
17189 "version": "1.24.0",
17190 "sha256": "0850frx6fg9py2laav0yqavl9ckbn6y475xm9r6gxvyzp63smzdg",
17191 "depends": ["Biostrings", "Rsamtools", "biovizBase", "brew", "ggplot2", "plyr", "reshape", "testthat", "xtable"],
17192 "broken": true
17193 },
17194 "rDGIdb": {
17195 "name": "rDGIdb",
17196 "version": "1.30.0",
17197 "sha256": "1v96nj1ffmg1678p7rspcqsnqvwcssv96jcyqqbb8v8sryflwmi5",
17198 "depends": ["httr", "jsonlite"],
17199 "broken": true
17200 },
17201 "rGADEM": {
17202 "name": "rGADEM",
17203 "version": "2.55.0",
17204 "sha256": "1fjqvkayam7xpvvbdlz6nafgsrw46vgmbkl96mfvm4szclrxzs8g",
17205 "depends": ["BSgenome", "Biostrings", "GenomicRanges", "IRanges", "seqLogo"],
17206 "broken": true
17207 },
17208 "rHVDM": {
17209 "name": "rHVDM",
17210 "version": "1.36.0",
17211 "sha256": "0k1gccnac59q54y2nypzgip2srs5yg3v2hhrz86ps50p2lx4pqd2",
17212 "depends": ["Biobase", "R2HTML", "affy", "minpack_lm"],
17213 "broken": true
17214 },
17215 "rMAT": {
17216 "name": "rMAT",
17217 "version": "3.20.0",
17218 "sha256": "0dq4ipz1j6qai8q8z038hjb5j0w67gp7449vj8psgca2854gxa7s",
17219 "depends": ["Biobase", "BiocGenerics", "IRanges", "affxparser"],
17220 "broken": true
17221 },
17222 "rSFFreader": {
17223 "name": "rSFFreader",
17224 "version": "0.18.0",
17225 "sha256": "0z2lkjbs3svx1b9zr4smjwrcd9xzxhfp98428vzaqq0k79h1v666",
17226 "depends": ["Biostrings", "IRanges", "S4Vectors", "ShortRead", "XVector"],
17227 "broken": true
17228 },
17229 "rTANDEM": {
17230 "name": "rTANDEM",
17231 "version": "1.10.0",
17232 "sha256": "1dmaqdjfmjkkrddf666hpp95s7s6x0ssinx9aybl6952ylfjgcd1",
17233 "depends": ["Rcpp", "XML", "data_table"],
17234 "broken": true
17235 },
17236 "rama": {
17237 "name": "rama",
17238 "version": "1.44.0",
17239 "sha256": "0nka6a2dk7jn4lk0i2p91hxwdgpny6y3j4dz709crrxlz3xjqflm",
17240 "depends": [],
17241 "broken": true
17242 },
17243 "reb": {
17244 "name": "reb",
17245 "version": "1.48.0",
17246 "sha256": "1bxijf91vdr6088459r29kvy691bjbscy170pc0739iqbg7z80zm",
17247 "depends": ["Biobase", "idiogram"],
17248 "broken": true
17249 },
17250 "receptLoss": {
17251 "name": "receptLoss",
17252 "version": "1.20.0",
17253 "sha256": "1b6lfs7dmizyvl1x21rf2h07pc04x7ains30zn64p8xrg6cxkfr9",
17254 "depends": ["SummarizedExperiment", "dplyr", "ggplot2", "magrittr", "tidyr"],
17255 "broken": true
17256 },
17257 "regionalpcs": {
17258 "name": "regionalpcs",
17259 "version": "1.6.0",
17260 "sha256": "07c66bi8df6pl6biim16z108mv5zb5cr7xzifm41vbfj2cwyjkdp",
17261 "depends": ["GenomicRanges", "PCAtools", "dplyr", "tibble"],
17262 "broken": true
17263 },
17264 "restfulSE": {
17265 "name": "restfulSE",
17266 "version": "1.24.0",
17267 "sha256": "0i40yfvynxy34jfkvzyvjwvxf89zi4pvy9m9i0bk93l17gyhnjyl",
17268 "depends": ["AnnotationDbi", "AnnotationHub", "bigrquery", "Biobase", "DBI", "DelayedArray", "dplyr", "ExperimentHub", "GO_db", "magrittr", "reshape2", "rhdf5client", "rlang", "S4Vectors", "SummarizedExperiment"],
17269 "broken": true
17270 },
17271 "rnaSeqMap": {
17272 "name": "rnaSeqMap",
17273 "version": "2.28.0",
17274 "sha256": "0mfcy7l31g5z5yv12sv9imaf19p9vawnk7cqcm50x2sm032r8n7f",
17275 "depends": ["Biobase", "DBI", "DESeq", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "edgeR"],
17276 "broken": true
17277 },
17278 "rols": {
17279 "name": "rols",
17280 "version": "3.4.0",
17281 "sha256": "1v6sp43j9ls4mxmfhzr3slq9kbhsnhwk7400i832yk1p7i0l9h4v",
17282 "depends": ["Biobase", "BiocGenerics", "httr2", "jsonlite"],
17283 "broken": true
17284 },
17285 "sRAP": {
17286 "name": "sRAP",
17287 "version": "1.10.0",
17288 "sha256": "080s88l3a2fbgqnc8sy41kwzkm6skjazkirqini7n6xqcsqb9lih",
17289 "depends": ["ROCR", "WriteXLS", "gplots", "pls", "qvalue"],
17290 "broken": true
17291 },
17292 "sampleClassifier": {
17293 "name": "sampleClassifier",
17294 "version": "1.32.0",
17295 "sha256": "18cmgpwwd54mkkpg13wjznbk71lp0bz1p5ics9mhxiq6vfw8i62l",
17296 "depends": ["MGFM", "MGFR", "annotate", "e1071", "ggplot2"],
17297 "broken": true
17298 },
17299 "sapFinder": {
17300 "name": "sapFinder",
17301 "version": "1.8.0",
17302 "sha256": "12a0wcjxcz77b06bymhqcj5wxzm478mlj9vcvbbqhdfvj7214hy9",
17303 "depends": ["Rcpp", "pheatmap", "rTANDEM"],
17304 "broken": true
17305 },
17306 "saps": {
17307 "name": "saps",
17308 "version": "2.2.0",
17309 "sha256": "11v7nxlcnkslxl0giv3y2naxpfsmqmrj6b4y2g6zbp48zml45jgl",
17310 "depends": ["piano", "reshape2", "survcomp", "survival"],
17311 "broken": true
17312 },
17313 "savR": {
17314 "name": "savR",
17315 "version": "1.8.0",
17316 "sha256": "1vxxmzr8k6fn9fqr0pbfvccqq30d8w3fwjcr5x0bh1d77mzgf9n1",
17317 "depends": ["XML", "ggplot2", "gridExtra", "reshape2", "scales"],
17318 "broken": true
17319 },
17320 "sbgr": {
17321 "name": "sbgr",
17322 "version": "1.0.0",
17323 "sha256": "0bvvxd0c4k4mmwkcb9w02i2kb6vwlq84w8vfqiamnwjy2vgjgka9",
17324 "depends": ["httr", "jsonlite", "objectProperties"],
17325 "broken": true
17326 },
17327 "scAlign": {
17328 "name": "scAlign",
17329 "version": "1.12.0",
17330 "sha256": "1mlhxwsfrmhysa5mcyx7vf2jn49snf41yb7xqmyi40wilj9h8qlb",
17331 "depends": ["FNN", "ggplot2", "irlba", "purrr", "Rtsne", "Seurat", "SingleCellExperiment", "tensorflow"],
17332 "broken": true
17333 },
17334 "scClassifR": {
17335 "name": "scClassifR",
17336 "version": "1.2.0",
17337 "sha256": "0p9l9q5ina0axrqvqn1y5wkfqi0nacxm3nm6ny34j53znv07b2zz",
17338 "depends": ["ape", "caret", "data_tree", "dplyr", "e1071", "ggplot2", "kernlab", "pROC", "ROCR", "Seurat", "SingleCellExperiment", "SummarizedExperiment"],
17339 "broken": true
17340 },
17341 "scFeatures": {
17342 "name": "scFeatures",
17343 "version": "1.8.0",
17344 "sha256": "0srvd9jayyy3793jmm7pcq70m4mhvdc9qhsszbnnl2qcd33wsnkv",
17345 "depends": ["AUCell", "BiocParallel", "DT", "DelayedArray", "DelayedMatrixStats", "EnsDb_Hsapiens_v79", "EnsDb_Mmusculus_v79", "GSVA", "MatrixGenerics", "Seurat", "SingleCellSignalR", "ape", "cli", "dplyr", "ensembldb", "glue", "gtools", "msigdbr", "proxyC", "reshape2", "rmarkdown", "spatstat_explore", "spatstat_geom", "tidyr"],
17346 "broken": true
17347 },
17348 "scMAGeCK": {
17349 "name": "scMAGeCK",
17350 "version": "1.9.1",
17351 "sha256": "1i6l8jxrd66aqk3m9212wsi8jqklvs0agsqrllvf9mrh16js4vby",
17352 "depends": ["ggplot2", "Seurat"],
17353 "broken": true
17354 },
17355 "scQTLtools": {
17356 "name": "scQTLtools",
17357 "version": "1.0.3",
17358 "sha256": "0k1ps1l56a7ybk28py515c39a9b798ysh7c47zj3w6fqncc6gpl7",
17359 "depends": ["DESeq2", "GOSemSim", "Matrix", "SeuratObject", "SingleCellExperiment", "SummarizedExperiment", "VGAM", "biomaRt", "dplyr", "gamlss", "ggplot2", "limma", "magrittr", "patchwork", "progress", "stringr"],
17360 "broken": true
17361 },
17362 "scsR": {
17363 "name": "scsR",
17364 "version": "1.6.0",
17365 "sha256": "0g1vgx8wrdwbhlzmf0a11fg5jnbkvz402h8qj48vj4bq8j202bc1",
17366 "depends": ["BiocGenerics", "Biostrings", "IRanges", "RColorBrewer", "STRINGdb", "ggplot2", "hash", "plyr", "sqldf"],
17367 "broken": true
17368 },
17369 "seq2pathway": {
17370 "name": "seq2pathway",
17371 "version": "1.40.0",
17372 "sha256": "1js23facw3z31fn4g8xrnxsvwfj4ij1spancl243wwnpdspw2vwy",
17373 "depends": ["GSA", "GenomicRanges", "WGCNA", "biomaRt", "nnet", "seq2pathway_data"],
17374 "broken": true
17375 },
17376 "seqArchR": {
17377 "name": "seqArchR",
17378 "version": "1.12.0",
17379 "sha256": "05i8ln6dbq46v4gnajmrfrnsi2y7mw22dzsmcbc6zni64c2r0186",
17380 "depends": ["BiocParallel", "Biostrings", "MASS", "Matrix", "cli", "cluster", "cvTools", "fpc", "ggplot2", "ggseqlogo", "matrixStats", "prettyunits", "reshape2", "reticulate"],
17381 "broken": true
17382 },
17383 "seqArchRplus": {
17384 "name": "seqArchRplus",
17385 "version": "1.8.0",
17386 "sha256": "17pby4jz6422ndfkxzq19r7js01ai2mp4m6jn1dj622a16gvgkp4",
17387 "depends": ["BSgenome", "BiocParallel", "Biostrings", "ChIPseeker", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "S4Vectors", "cli", "clusterProfiler", "cowplot", "factoextra", "ggimage", "ggplot2", "gridExtra", "heatmaps", "magick", "scales", "seqArchR", "seqPattern"],
17388 "broken": true
17389 },
17390 "seqCNA": {
17391 "name": "seqCNA",
17392 "version": "1.16.0",
17393 "sha256": "1wq92wszv0x99l52lm3k0zc2ffin1sp78xlyfabxpwi1v0yrkifl",
17394 "depends": ["GLAD", "adehabitatLT", "doSNOW", "seqCNA_annot"],
17395 "broken": true
17396 },
17397 "seqTools": {
17398 "name": "seqTools",
17399 "version": "1.42.0",
17400 "sha256": "0g9308wmrz9mkf8r1vg8pbz7z2bpcqd6invn30aka18r8kwcim7s",
17401 "depends": ["zlibbioc"],
17402 "broken": true
17403 },
17404 "seqbias": {
17405 "name": "seqbias",
17406 "version": "1.18.0",
17407 "sha256": "1wwskcbl3wd8gl63jl4wl0xwzj8kbwbc8xhp12z3xximngkk7dgd",
17408 "depends": ["Biostrings", "GenomicRanges", "Rsamtools", "zlibbioc"],
17409 "broken": true
17410 },
17411 "seqplots": {
17412 "name": "seqplots",
17413 "version": "1.8.1",
17414 "sha256": "0anv2048m5zp2ijfzk79avcwzp662gw0y58j7nafha21j5s2qyhm",
17415 "depends": ["BSgenome", "Biostrings", "DBI", "DT", "GenomeInfoDb", "GenomicRanges", "IRanges", "RColorBrewer", "RSQLite", "S4Vectors", "class", "digest", "fields", "ggplot2", "gridExtra", "jsonlite", "kohonen", "plotrix", "reshape2", "rtracklayer", "shiny"],
17416 "broken": true
17417 },
17418 "shiny_gosling": {
17419 "name": "shiny.gosling",
17420 "version": "1.4.0",
17421 "sha256": "1as7hrs3kfwxlr9zykdm88gv985gdnmzlrb2hn9zcgsalika53in",
17422 "depends": ["digest", "fs", "htmltools", "jsonlite", "rjson", "rlang", "shiny", "shiny_react"],
17423 "broken": true
17424 },
17425 "shinyTANDEM": {
17426 "name": "shinyTANDEM",
17427 "version": "1.8.0",
17428 "sha256": "0dkgwfynznpq2q55d83w4x0nmal3dkgzxi1jpdcsasqlhsyqvmvx",
17429 "depends": ["mixtools", "rTANDEM", "shiny", "xtable"],
17430 "broken": true
17431 },
17432 "sigPathway": {
17433 "name": "sigPathway",
17434 "version": "1.38.0",
17435 "sha256": "126cyw88d6rxp3bzdqsmm2v0kvhn650qmi4zcs9v50n0hhwyrxrf",
17436 "depends": [],
17437 "broken": true
17438 },
17439 "sigaR": {
17440 "name": "sigaR",
17441 "version": "1.14.0",
17442 "sha256": "07ip468liyg9b6q9izd1wdp29p9f2icfs01nf0il4gc76h6d0rr5",
17443 "depends": ["Biobase", "CGHbase", "MASS", "corpcor", "igraph", "marray", "mvtnorm", "penalized", "quadprog", "snowfall"],
17444 "broken": true
17445 },
17446 "simpleaffy": {
17447 "name": "simpleaffy",
17448 "version": "2.46.0",
17449 "sha256": "1x3f7hm7w44yarq4irv791330zfamhsqqwnqz8xfwrpvjrkv6avn",
17450 "depends": ["Biobase", "BiocGenerics", "affy", "gcrma", "genefilter"],
17451 "broken": true
17452 },
17453 "simulatorZ": {
17454 "name": "simulatorZ",
17455 "version": "1.4.0",
17456 "sha256": "1sypvrwq6ay7lzmb9cmpix1zgzafzryvf4my5jky846bcpam91qj",
17457 "depends": ["Biobase", "BiocGenerics", "GenomicRanges", "Hmisc", "IRanges", "S4Vectors", "SummarizedExperiment", "gbm", "survival"],
17458 "broken": true
17459 },
17460 "single": {
17461 "name": "single",
17462 "version": "1.7.0",
17463 "sha256": "0h7h9m4xr65nayr707jvjnbic1q4z0hsghw5i3pfpz2n6p9pb8s8",
17464 "depends": ["BiocGenerics", "Biostrings", "GenomicAlignments", "IRanges", "Rsamtools", "dplyr", "reshape2", "rlang", "stringr", "tidyr"],
17465 "broken": true
17466 },
17467 "slinky": {
17468 "name": "slinky",
17469 "version": "1.12.0",
17470 "sha256": "05ywydvyz3jnzbhabhz1sd61hpy9nb22512zpbi48mv5wic1sv3v",
17471 "depends": ["curl", "dplyr", "foreach", "httr", "jsonlite", "readr", "rhdf5", "SummarizedExperiment", "tidyr"],
17472 "broken": true
17473 },
17474 "snapCGH": {
17475 "name": "snapCGH",
17476 "version": "1.40.0",
17477 "sha256": "0fjqp0qhwk041pgwqp3av5ihkf4xb9li6zy6gmvk24hlj8sm600z",
17478 "depends": ["DNAcopy", "GLAD", "aCGH", "cluster", "limma", "tilingArray"],
17479 "broken": true
17480 },
17481 "soGGi": {
17482 "name": "soGGi",
17483 "version": "1.40.1",
17484 "sha256": "0qz7ilxxp8f9yi2bhp7w6nk8jrakmp8ymi0r7zqzmr2ldjp03ans",
17485 "depends": ["BiocGenerics", "BiocParallel", "Biostrings", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "IRanges", "Rsamtools", "S4Vectors", "SummarizedExperiment", "chipseq", "ggplot2", "preprocessCore", "reshape2", "rtracklayer"],
17486 "broken": true
17487 },
17488 "sojourner": {
17489 "name": "sojourner",
17490 "version": "1.11.0",
17491 "sha256": "1s0iqzn65s9g4yymy059z122i9wvgkcb5718snzxhj7mkqjzwhhc",
17492 "depends": ["dplyr", "EBImage", "fitdistrplus", "ggplot2", "gridExtra", "lattice", "MASS", "mclust", "minpack_lm", "mixtools", "mltools", "nls2", "pixmap", "plyr", "R_matlab", "Rcpp", "reshape2", "rlang", "scales", "shiny", "shinyjs", "sp", "truncnorm"],
17493 "broken": true
17494 },
17495 "spade": {
17496 "name": "spade",
17497 "version": "1.18.2",
17498 "sha256": "0m2784x2ysp4mc7m8n8scpr1h38m3p9glcc5jd6cix55bh3yzykk",
17499 "depends": ["Biobase", "flowCore", "igraph"],
17500 "broken": true
17501 },
17502 "sparseDOSSA": {
17503 "name": "sparseDOSSA",
17504 "version": "1.24.0",
17505 "sha256": "1xy9kd5a9vilwkgr4xw6lcdwgwykg7q7kildpfw4gqymd1frnjp6",
17506 "depends": ["MASS", "MCMCpack", "optparse", "tmvtnorm"],
17507 "broken": true
17508 },
17509 "spatialHeatmap": {
17510 "name": "spatialHeatmap",
17511 "version": "2.14.1",
17512 "sha256": "002w2srp628asbwjc5q8jn51f4czrbna8raqa0sb1w7qlhckccak",
17513 "depends": ["Matrix", "S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "data_table", "dplyr", "edgeR", "genefilter", "ggplot2", "ggplotify", "grImport", "gridExtra", "igraph", "reshape2", "rsvg", "shiny", "shinydashboard", "spsComps", "tibble", "xml2"],
17514 "broken": true
17515 },
17516 "spatzie": {
17517 "name": "spatzie",
17518 "version": "1.14.0",
17519 "sha256": "1jvz4szaqx1l7n87dd68mzpgpskxarpkg36qz0nx9x0d9xv4a9jd",
17520 "depends": ["BSgenome", "BiocGenerics", "GenomeInfoDb", "GenomicFeatures", "GenomicInteractions", "GenomicRanges", "IRanges", "MatrixGenerics", "S4Vectors", "SummarizedExperiment", "TFBSTools", "ggplot2", "matrixStats", "motifmatchr"],
17521 "broken": true
17522 },
17523 "spliceR": {
17524 "name": "spliceR",
17525 "version": "1.12.0",
17526 "sha256": "0r5j0ibl2ccsxb7rr2fxw4b07wbdiyfndxkl4pgd9h0ks4qyhyjy",
17527 "depends": ["GenomicRanges", "IRanges", "RColorBrewer", "VennDiagram", "cummeRbund", "plyr", "rtracklayer"],
17528 "broken": true
17529 },
17530 "spliceSites": {
17531 "name": "spliceSites",
17532 "version": "1.8.3",
17533 "sha256": "1jifh0nbqjhrc07jfc50hfk4wn1hv3a863rbr3fnqlg9rwg044w7",
17534 "depends": ["Biobase", "BiocGenerics", "Biostrings", "IRanges", "doBy", "seqLogo"],
17535 "broken": true
17536 },
17537 "splicegear": {
17538 "name": "splicegear",
17539 "version": "1.42.0",
17540 "sha256": "1g2fqql1wqzwz1vx5cq03ckld0gccqk6rv9l99xsaa8mhf0rn1qa",
17541 "depends": ["Biobase", "XML", "annotate"],
17542 "broken": true
17543 },
17544 "spotSegmentation": {
17545 "name": "spotSegmentation",
17546 "version": "1.44.0",
17547 "sha256": "074nzh18pj6dpk9bqh8id0j2vpaxvhi2ddrz6hnza381wzdgxdr3",
17548 "depends": ["mclust"],
17549 "broken": true
17550 },
17551 "sscore": {
17552 "name": "sscore",
17553 "version": "1.42.0",
17554 "sha256": "0h86crb241vmaczp76wz4zv9ni1snmlkrdi1md3hgq1hqxnn9gzs",
17555 "depends": ["affy", "affyio"],
17556 "broken": true
17557 },
17558 "staRank": {
17559 "name": "staRank",
17560 "version": "1.12.0",
17561 "sha256": "1vgc3mhxyhrgwkapnqx4061l9l0nyc012508hma14xbxml3f76sg",
17562 "depends": ["cellHTS2"],
17563 "broken": true
17564 },
17565 "stepwiseCM": {
17566 "name": "stepwiseCM",
17567 "version": "1.16.0",
17568 "sha256": "1ss79yr75kw7fsd8ihpivj9k5v32zxr3ymkl6prba0nyxdj5wyz9",
17569 "depends": ["Biobase", "e1071", "glmpath", "pamr", "penalized", "randomForest", "snowfall", "tspair"],
17570 "broken": true
17571 },
17572 "struct": {
17573 "name": "struct",
17574 "version": "1.20.2",
17575 "sha256": "0280k9mv8q46fh78yhr5hxp5xayszl0q8qn39xhndin7i50pwni3",
17576 "depends": ["S4Vectors", "SummarizedExperiment", "knitr", "ontologyIndex", "rols"],
17577 "broken": true
17578 },
17579 "structToolbox": {
17580 "name": "structToolbox",
17581 "version": "1.20.0",
17582 "sha256": "1wy0bw3a6q11w1fi4i17kswfjql9865rim1znhrmfq91vqndqldp",
17583 "depends": ["ggplot2", "ggthemes", "gridExtra", "scales", "sp", "struct"],
17584 "broken": true
17585 },
17586 "supraHex": {
17587 "name": "supraHex",
17588 "version": "1.8.0",
17589 "sha256": "1g2zcarzi805y2933pyjdgg7l9imbhdf4pjhyr8bir0149li98cy",
17590 "depends": ["MASS", "ape", "hexbin"],
17591 "broken": true
17592 },
17593 "synapter": {
17594 "name": "synapter",
17595 "version": "2.31.0",
17596 "sha256": "09jcnaw6mhcwk1mzysk3ryy6j11dasj3dkz7gajlgm855wcznkmp",
17597 "depends": ["Biobase", "Biostrings", "MSnbase", "RColorBrewer", "cleaver", "lattice", "multtest", "qvalue", "readr", "rmarkdown"],
17598 "broken": true
17599 },
17600 "tidytof": {
17601 "name": "tidytof",
17602 "version": "1.2.0",
17603 "sha256": "13m028bm21j7404ncvpg7l7qvfkbvcnbrf4rp3xilyl5m6cyvidy",
17604 "depends": ["Rcpp", "RcppHNSW", "doParallel", "dplyr", "flowCore", "foreach", "ggplot2", "ggraph", "glmnet", "purrr", "readr", "recipes", "rlang", "stringr", "survival", "tibble", "tidygraph", "tidyr", "tidyselect", "yardstick"],
17605 "broken": true
17606 },
17607 "tofsims": {
17608 "name": "tofsims",
17609 "version": "1.22.0",
17610 "sha256": "0da4843wbcr821yp8z3z4vd81qpm2lblckgd01fm89lmwj393z65",
17611 "depends": ["ALS", "alsace", "KernSmooth", "ProtGenerics", "Rcpp", "RcppArmadillo", "signal"],
17612 "broken": true
17613 },
17614 "traviz": {
17615 "name": "traviz",
17616 "version": "1.10.0",
17617 "sha256": "1jjdfl8xvzlr31w74j12s5pdg5b1yylg1i30n804p9mqyx11g5sc",
17618 "depends": ["Biobase", "RColorBrewer", "SingleCellExperiment", "SummarizedExperiment", "ggplot2", "mgcv", "princurve", "rgl", "slingshot", "viridis"],
17619 "broken": true
17620 },
17621 "trena": {
17622 "name": "trena",
17623 "version": "1.22.2",
17624 "sha256": "1xjhqm2g53kgcnnqhs5l3vn525h7amaz4hvsskjp5zb0gkfpiwh1",
17625 "depends": ["AnnotationDbi", "biomaRt", "Biostrings", "BSgenome", "BSgenome_Hsapiens_UCSC_hg19", "BSgenome_Hsapiens_UCSC_hg38", "BSgenome_Mmusculus_UCSC_mm10", "DBI", "GenomicRanges", "glmnet", "lassopv", "MotifDb", "org_Hs_eg_db", "randomForest", "RMySQL", "RPostgreSQL", "RSQLite", "SNPlocs_Hsapiens_dbSNP150_GRCh38", "WGCNA", "xgboost"],
17626 "broken": true
17627 },
17628 "triform": {
17629 "name": "triform",
17630 "version": "1.12.0",
17631 "sha256": "0pqfz6msalr2264iwi2hzam2sv8yl4fy1ri72pff5gh14rbxgiml",
17632 "depends": ["BiocGenerics", "IRanges", "yaml"],
17633 "broken": true
17634 },
17635 "trigger": {
17636 "name": "trigger",
17637 "version": "1.53.0",
17638 "sha256": "1m1gwqjz8b72csygl0yp2jz3i9pv8yxgb3gk5s53bbh27wfh9hk8",
17639 "depends": ["corpcor", "qtl", "qvalue", "sva"],
17640 "broken": true
17641 },
17642 "tscR": {
17643 "name": "tscR",
17644 "version": "1.11.0",
17645 "sha256": "19jpmyb6dly7l0418c1z0dlb936wjh6nwkb0mvk13ym19qgv1my7",
17646 "depends": ["class", "cluster", "dplyr", "dtw", "GenomicRanges", "ggplot2", "gridExtra", "IRanges", "knitr", "latex2exp", "prettydoc", "RColorBrewer", "rmarkdown", "S4Vectors", "SummarizedExperiment"],
17647 "broken": true
17648 },
17649 "tspair": {
17650 "name": "tspair",
17651 "version": "1.28.0",
17652 "sha256": "0m083g5z77n7dd4lnbhvbwjkykh7a4pl4v8j7ipr5w7f9dhdjk33",
17653 "depends": ["Biobase"],
17654 "broken": true
17655 },
17656 "waveTiling": {
17657 "name": "waveTiling",
17658 "version": "1.12.0",
17659 "sha256": "0j866mgxj44mv4wp0yqnav83w8pfb47lmjhp1y0qqvxc6q9k80g8",
17660 "depends": ["Biobase", "Biostrings", "GenomeGraphs", "GenomicRanges", "IRanges", "affy", "oligo", "oligoClasses", "preprocessCore", "waveslim"],
17661 "broken": true
17662 },
17663 "wppi": {
17664 "name": "wppi",
17665 "version": "1.16.0",
17666 "sha256": "17rkfbhy0r22ayca4c7n8gr2kjgbj3r4gk1rh423cp566x0n7pcp",
17667 "depends": ["Matrix", "OmnipathR", "RCurl", "dplyr", "igraph", "logger", "magrittr", "progress", "purrr", "rlang", "tibble", "tidyr"],
17668 "broken": true
17669 },
17670 "xps": {
17671 "name": "xps",
17672 "version": "1.30.0",
17673 "sha256": "0wh98fsj3j368bxk4wa7rjd3acwl04r1dfiy13a89zv1fzv3wvky",
17674 "depends": [],
17675 "broken": true
17676 },
17677 "yaqcaffy": {
17678 "name": "yaqcaffy",
17679 "version": "1.30.0",
17680 "sha256": "1pj2ksqbj7dlc76s6qagi7iq35wa83gx5cp0hm42w3bj7mxprjbi",
17681 "depends": ["simpleaffy"],
17682 "broken": true
17683 },
17684 "zlibbioc": {
17685 "name": "zlibbioc",
17686 "version": "1.54.0",
17687 "sha256": "0ll3v5b9yk63rqiwm4g0dwan22mqkj2lv1b6czwghbpl1jpv2jrd",
17688 "depends": [],
17689 "broken": true
17690 }
17691 }
17692}