tjh.dev
nixpkgs mirror (for testing)
github.com/NixOS/nixpkgs
nix
1{
2 lib,
3 buildPythonPackage,
4 fetchFromGitHub,
5 pytestCheckHook,
6 pytest-cov-stub,
7 lxml,
8 matplotlib,
9 networkx,
10 pandas,
11 requests,
12 setuptools,
13}:
14
15buildPythonPackage rec {
16 pname = "pyxnat";
17 version = "1.6.4";
18 pyproject = true;
19
20 # PyPI dist missing test configuration files:
21 src = fetchFromGitHub {
22 owner = "pyxnat";
23 repo = "pyxnat";
24 tag = version;
25 hash = "sha256-Dhidc5KOzx/S0sr4D7Oc8lvSDT0y8bGDNTAJy/6n8mA=";
26 };
27
28 build-system = [ setuptools ];
29
30 propagatedBuildInputs = [
31 lxml
32 requests
33 ];
34
35 # pathlib is installed part of python38+ w/o an external package
36 prePatch = ''
37 substituteInPlace setup.py --replace-fail "pathlib>=1.0" ""
38 '';
39
40 nativeCheckInputs = [
41 pytestCheckHook
42 pytest-cov-stub
43 matplotlib
44 networkx
45 pandas
46 ];
47 preCheck = ''
48 export PYXNAT_SKIP_NETWORK_TESTS=1
49 '';
50 enabledTestPaths = [ "pyxnat" ];
51 disabledTestPaths = [
52 # require a running local XNAT instance e.g. in a docker container:
53 "pyxnat/tests/attributes_test.py"
54 "pyxnat/tests/custom_variables_test.py"
55 "pyxnat/tests/interfaces_test.py"
56 "pyxnat/tests/pipelines_test.py"
57 "pyxnat/tests/provenance_test.py"
58 "pyxnat/tests/prearchive_test.py"
59 "pyxnat/tests/repr_test.py"
60 "pyxnat/tests/resources_test.py"
61 "pyxnat/tests/search_test.py"
62 "pyxnat/tests/sessionmirror_test.py"
63 "pyxnat/tests/test_resource_functions.py"
64 "pyxnat/tests/user_and_project_management_test.py"
65 ];
66 disabledTests = [
67 # try to access network even though PYXNAT_SKIP_NETWORK_TESTS is set:
68 "test_inspector_structure"
69 "test_project_manager"
70 ];
71
72 pythonImportsCheck = [ "pyxnat" ];
73
74 meta = {
75 homepage = "https://pyxnat.github.io/pyxnat";
76 description = "Python API to XNAT";
77 mainProgram = "sessionmirror.py";
78 changelog = "https://github.com/pyxnat/pyxnat/releases/tag/${src.tag}";
79 license = lib.licenses.bsd3;
80 maintainers = with lib.maintainers; [ bcdarwin ];
81 };
82}