tjh.dev
nixpkgs mirror (for testing)
github.com/NixOS/nixpkgs
nix
1{
2 python3,
3 lib,
4 fetchFromGitHub,
5}:
6
7python3.pkgs.buildPythonApplication rec {
8 pname = "xenomapper";
9 version = "1.0.2";
10 pyproject = true;
11
12 src = fetchFromGitHub {
13 owner = "genomematt";
14 repo = "xenomapper";
15 rev = "v${version}";
16 sha256 = "0mnmfzlq5mhih6z8dq5bkx95vb8whjycz9mdlqwbmlqjb3gb3zhr";
17 };
18
19 build-system = with python3.pkgs; [ setuptools ];
20
21 dependencies = with python3.pkgs; [ statistics ];
22
23 pythonImportsCheck = [
24 "xenomapper.xenomapper"
25 "xenomapper.mappability"
26 ];
27
28 meta = {
29 homepage = "https://github.com/genomematt/xenomapper";
30 description = "Utility for post processing mapped reads that have been aligned to a primary genome and a secondary genome and binning reads into species specific, multimapping in each species, unmapped and unassigned bins";
31 license = lib.licenses.gpl3;
32 platforms = lib.platforms.all;
33 maintainers = [ lib.maintainers.jbedo ];
34 };
35}