tjh.dev
nixpkgs mirror (for testing)
github.com/NixOS/nixpkgs
nix
1{
2 lib,
3 stdenv,
4 fetchurl,
5 zlib,
6}:
7
8stdenv.mkDerivation (finalAttrs: {
9 pname = "subread";
10 version = "2.1.1";
11
12 src = fetchurl {
13 url = "mirror://sourceforge/subread/subread-${finalAttrs.version}/subread-${finalAttrs.version}-source.tar.gz";
14 sha256 = "sha256-Y5LXxmgxzddn5YJRiSp5pRtvq47QupZxrV6F/xqwHqo=";
15 };
16
17 buildInputs = [
18 zlib
19 ];
20
21 configurePhase = ''
22 runHook preConfigure
23
24 cd src
25 cp Makefile.${if stdenv.hostPlatform.isLinux then "Linux" else "MacOS"} Makefile
26
27 runHook postConfigure
28 '';
29
30 makeFlags = [ "CC_EXEC=cc" ];
31
32 installPhase = ''
33 mkdir $out
34 cp -r ../bin $out
35 '';
36
37 meta = {
38 broken = stdenv.hostPlatform.isDarwin;
39 description = "High-performance read alignment, quantification and mutation discovery";
40 license = lib.licenses.gpl3;
41 maintainers = with lib.maintainers; [ jbedo ];
42 platforms = [
43 "x86_64-darwin"
44 "x86_64-linux"
45 ];
46 homepage = "https://subread.sourceforge.net/";
47 };
48
49})