tjh.dev
nixpkgs mirror (for testing)
github.com/NixOS/nixpkgs
nix
1{
2 lib,
3 stdenv,
4 fetchFromGitHub,
5 fetchpatch,
6 htslib,
7 zlib,
8 bzip2,
9 xz,
10 curl,
11 openssl,
12}:
13
14stdenv.mkDerivation (finalAttrs: {
15 pname = "angsd";
16 version = "0.940";
17
18 src = fetchFromGitHub {
19 owner = "ANGSD";
20 repo = "angsd";
21 sha256 = "sha256-Ppxgy54pAnqJUzNX5c12NHjKTQyEEcPSpCEEVOyZ/LA=";
22 tag = finalAttrs.version;
23 };
24
25 patches = [
26 # Pull pending inclusion upstream patch for parallel buil fixes:
27 # https://github.com/ANGSD/angsd/pull/590
28 (fetchpatch {
29 name = "parallel-make.patch";
30 url = "https://github.com/ANGSD/angsd/commit/89fd1d898078016df390e07e25b8a3eeadcedf43.patch";
31 hash = "sha256-KQgUfr3v8xc+opAm4qcSV2eaupztv4gzJJHyzJBCxqA=";
32 })
33 ];
34
35 buildInputs = [
36 htslib
37 zlib
38 bzip2
39 xz
40 curl
41 openssl
42 ];
43
44 enableParallelBuilding = true;
45
46 makeFlags = [
47 "HTSSRC=systemwide"
48 "prefix=$(out)"
49 ];
50
51 meta = {
52 description = "Program for analysing NGS data";
53 homepage = "http://www.popgen.dk/angsd";
54 maintainers = [ lib.maintainers.bzizou ];
55 license = lib.licenses.gpl2;
56 };
57})