pkgs/development/r-modules/bioc-packages.nix at netboot-syslinux-multiplatform

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nixpkgs / pkgs / development / r-modules / bioc-packages.nix
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   1# This file is generated from generate-r-packages.R. DO NOT EDIT.
   2# Execute the following command to update the file.
   3#
   4# Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix
   5
   6{ self, derive }:
   7let derive2 = derive { biocVersion = "3.16"; };
   8in with self; {
   9  ABSSeq = derive2 { name="ABSSeq"; version="1.52.0"; sha256="1ypd0wg3k2zzl0zf15c16dc38hfpsm5vv4x0x0yf90x0f8b6jpaz"; depends=[limma locfit]; };
  10  ABarray = derive2 { name="ABarray"; version="1.66.0"; sha256="02rjxzbrzphl28z8zpgw3gavzlzlx71n5ld8sb3im6xpn81ykvfh"; depends=[Biobase multtest]; };
  11  ACE = derive2 { name="ACE"; version="1.16.0"; sha256="12gmdkzm9wnrq793xqvw3mzwmmsm1vkh36llapr7m7q4dmcfgxr0"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; };
  12  ACME = derive2 { name="ACME"; version="2.54.0"; sha256="0prcaxqmzm4hhpv228xh0glhm166gs17sa9h4lqrm03pwrjrdqdw"; depends=[Biobase BiocGenerics]; };
  13  ADAM = derive2 { name="ADAM"; version="1.14.0"; sha256="1s1mzjxqld8gllfh6z9kg30klb4y1jrkrif7vwr18c0mhamf47a6"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; };
  14  ADAMgui = derive2 { name="ADAMgui"; version="1.14.0"; sha256="1ks799kgdmlxn5iyj6rzj04cm28klivclz3bg6bc4wad2q7h4ra9"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; };
  15  ADImpute = derive2 { name="ADImpute"; version="1.8.0"; sha256="0wrprxd91vi4wwh9wixhx1ppbjsb56r4kcxgqz8w6ahr3z2387im"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; };
  16  ADaCGH2 = derive2 { name="ADaCGH2"; version="2.38.0"; sha256="0g9x3lnr56035wq9ijdcri4sz5pwj8184yxm415gmsxrii9xvpfd"; depends=[aCGH bit cluster DNAcopy ff GLAD snapCGH tilingArray waveslim]; };
  17  AGDEX = derive2 { name="AGDEX"; version="1.46.0"; sha256="0yvdx32yr4mv7dl5ycpbxhrkm6csrr7k3398ggjavdcfhz54dgr8"; depends=[Biobase GSEABase]; };
  18  AIMS = derive2 { name="AIMS"; version="1.30.0"; sha256="1civ4a14ynccv6xs27fm95fw6254l1z0q37546ivyv2mhbz0d2i1"; depends=[Biobase e1071]; };
  19  ALDEx2 = derive2 { name="ALDEx2"; version="1.30.0"; sha256="0585s5pb8zr9il1vhxw9vjzzajmdcjmf9zz3zlc5vpczd3fnzfkf"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; };
  20  AMARETTO = derive2 { name="AMARETTO"; version="1.14.0"; sha256="06j75c4j71fkkw5s52nbzb3k084y2f4v4h3js9dgsxxrd6jkzfz9"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; };
  21  AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.24.0"; sha256="0zzl5dv64yhdivsm2pgsfjikygib9pkfiv34h1lnmqrj6yivvvw8"; depends=[]; };
  22  ANCOMBC = derive2 { name="ANCOMBC"; version="2.0.2"; sha256="0dlinv4vhxgni8ygzvfw8pbc6d1v9x5chhrpxblhs2c65bkgyxz5"; depends=[CVXR DescTools doParallel doRNG dplyr emmeans energy foreach Hmisc lme4 lmerTest magrittr MASS mia nloptr Rdpack rlang rngtools S4Vectors SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; };
  23  ANF = derive2 { name="ANF"; version="1.20.0"; sha256="0yfwvgx7144r894fr13sx4gyyq6ljh7y734wx74sb7q80cl2gs1j"; depends=[Biobase igraph MASS RColorBrewer survival]; };
  24  APAlyzer = derive2 { name="APAlyzer"; version="1.12.0"; sha256="1iaz9ircfh5x3z5pibn5vnd4lbbr7m5ypk97xnizn22z41aqrxn3"; depends=[DESeq2 dplyr GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HybridMTest repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; };
  25  APL = derive2 { name="APL"; version="1.2.0"; sha256="1i02m70aa67m1h81q9lz3qmc52sc6cjicgxd9krqm9r6fpgcf22g"; depends=[ggplot2 ggrepel magrittr org_Hs_eg_db org_Mm_eg_db plotly reticulate rlang Seurat SingleCellExperiment SummarizedExperiment topGO viridisLite]; };
  26  ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.38.0"; sha256="14mffjsy7cwpa2xf8zdqwdk6mnfj3lf06y8s59ndh531b45nw5wc"; depends=[ARRmData]; };
  27  ASAFE = derive2 { name="ASAFE"; version="1.24.0"; sha256="1q4i33rw1qb8bnvkl06izl4nyl9lzgwy8rwrmvbrz1c384pmy8yj"; depends=[]; };
  28  ASEB = derive2 { name="ASEB"; version="1.42.0"; sha256="1kr6l2ma7wzy8i9dn86zx927yvx1l4bnkxhv97ra3sh5vr6m8ywa"; depends=[]; };
  29  ASGSCA = derive2 { name="ASGSCA"; version="1.32.0"; sha256="12wap8xbq6xl7p430yd9yy5kdhs15n7nmv2h3k9bsi0f4m6md02i"; depends=[MASS Matrix]; };
  30  ASICS = derive2 { name="ASICS"; version="2.14.0"; sha256="0c2b3gdza58vqhharhw8967p2w2knnrm5s2svvnnjbf67qbg45b7"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; };
  31  ASSET = derive2 { name="ASSET"; version="2.16.0"; sha256="13zwnjap4y0s3qqv10mv2i4mqan9nmkm2l29i448h1j3wwfq18j2"; depends=[MASS msm rmeta]; };
  32  ASSIGN = derive2 { name="ASSIGN"; version="1.34.0"; sha256="0y1j9j9g8mlrrxz8ggi45lb9gvdsmcq94c0pzj8y8lm7hmsmixwg"; depends=[ggplot2 gplots msm Rlab sva yaml]; };
  33  ASURAT = derive2 { name="ASURAT"; version="1.2.0"; sha256="1n5wvdyf80c0yhw8mxzkawxk0bkvy3qysxb9vgw1pj75nrp7ml7i"; depends=[circlize cluster ComplexHeatmap plot3D Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; };
  34  ASpediaFI = derive2 { name="ASpediaFI"; version="1.11.0"; sha256="13jny6ca8hdf269z37baaggfs7jss00ln09apn42pj411g3p7nms"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; };
  35  ASpli = derive2 { name="ASpli"; version="2.8.0"; sha256="0gwp5ijpxjy6hd1090cmwbfrfac1qqrzxc06n1j89c0va7wm9l4k"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; };
  36  ATACCoGAPS = derive2 { name="ATACCoGAPS"; version="1.0.0"; sha256="1n389l4b17j6q36irpd3gbdn5hlfk47315rx30jmsiwyid17qm4j"; depends=[BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm10 chromVAR CoGAPS dplyr fgsea GeneOverlap GenomicFeatures GenomicRanges gplots gtools Homo_sapiens IRanges JASPAR2016 motifmatchr msigdbr Mus_musculus projectR rGREAT stringr TFBSTools tidyverse]; };
  37  ATACseqQC = derive2 { name="ATACseqQC"; version="1.22.0"; sha256="12ggi2dzf8qyzjrxprvk099f61yrabg2d84iqnjxzrn77v6z19b2"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; };
  38  ATACseqTFEA = derive2 { name="ATACseqTFEA"; version="1.0.1"; sha256="0p7cs8a6ywh4k80q3hjbh8gd3599209li8igzkilaa4z7gvhj0fi"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggrepel IRanges limma Matrix motifmatchr pracma Rsamtools S4Vectors SummarizedExperiment TFBSTools]; };
  39  AUCell = derive2 { name="AUCell"; version="1.20.2"; sha256="1qb13qd5xzgrpx6jlg3ll0ff5spz3y06ji31vvqzm759almg2w3s"; depends=[BiocGenerics data_table DelayedArray DelayedMatrixStats GSEABase Matrix mixtools R_utils shiny SummarizedExperiment]; };
  40  AWFisher = derive2 { name="AWFisher"; version="1.12.0"; sha256="1psbxxrwb6mk2jwjw963vwdczb3i5590rcm7hk43kpiw45i1q1j9"; depends=[edgeR limma]; };
  41  AffiXcan = derive2 { name="AffiXcan"; version="1.16.0"; sha256="1jsdl477qhsq3rpqvgdm7navr4izpppfkiw0fvlhxwspgp3fjs6c"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; };
  42  AffyCompatible = derive2 { name="AffyCompatible"; version="1.58.0"; sha256="1bg7iqasvfsgd9x3ykgpblqnz1q06g3ifmzj4jf2kn8kxj63wfbl"; depends=[Biostrings RCurl XML]; };
  43  AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.44.0"; sha256="1n6x2c0h6xmcll7mxq4n1y8ahqfmba8ppdcrjk9hf3nh5wngprkz"; depends=[affy]; };
  44  AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.48.0"; sha256="0q3hynyd4dhhh1a2b27y3rrshgvxfwv17k7yabh6g4pc12c33mf7"; depends=[affy affycoretools Biobase limma preprocessCore]; };
  45  AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.36.0"; sha256="0zn8pp4pl5wr957mf6agjpn61f9qpnjx0nbxb5wnbr40672x0263"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; };
  46  AlphaBeta = derive2 { name="AlphaBeta"; version="1.12.0"; sha256="000apg879li9wkbyrl8cm73z6h0xasqp41h9ir9hywy2v38rmc5b"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; };
  47  AlpsNMR = derive2 { name="AlpsNMR"; version="4.0.4"; sha256="19j97qsa1vnxw05dlllbwzdap0xgnmgxyqbi5dy8w2ppwdzxgsfv"; depends=[baseline BiocParallel cli dplyr fs future generics ggplot2 glue htmltools magrittr matrixStats mixOmics pcaPP purrr readxl reshape2 rlang rmarkdown scales signal speaq stringr tibble tidyr tidyselect vctrs]; };
  48  AnVIL = derive2 { name="AnVIL"; version="1.10.2"; sha256="1j7n8c47j3njd5rnlrj8bkn4q5z7jpm0c9rdq1mlwd2i1yy9fz9b"; depends=[BiocManager dplyr DT futile_logger htmltools httr jsonlite miniUI rapiclient rlang shiny tibble tidyr tidyselect]; };
  49  AnVILBilling = derive2 { name="AnVILBilling"; version="1.8.0"; sha256="13qcp2s012ai44dkddk71ga44y87jnl0vljyd93lj1dlh8nw7c00"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; };
  50  AnVILPublish = derive2 { name="AnVILPublish"; version="1.8.0"; sha256="1i5zf7pyrzi6v13gpscmdb5qdb5gknicc8fk9s9nmsl1wpj6wlsw"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; };
  51  Anaquin = derive2 { name="Anaquin"; version="2.22.0"; sha256="08y2syaacy15rxcf3x2r3906kfm58fkx7ainaqvy5inlc9f670j5"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; };
  52  AneuFinder = derive2 { name="AneuFinder"; version="1.26.0"; sha256="154cg63n7h9h5jkj00aqf0hzbmmjg16bzvvk50fyixwq0a4q1j00"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust reshape2 Rsamtools S4Vectors]; };
  53  AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.60.2"; sha256="1c7f2vgdnh99zp83pvmghb7l0rihdijlhdj6ff992h7wrrha8lhg"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; };
  54  AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.22.0"; sha256="0m16kfssxbblf03ykawkmqa038cl90prhb23k6y88g2hwm00wynk"; depends=[GenomicRanges lazyeval]; };
  55  AnnotationForge = derive2 { name="AnnotationForge"; version="1.40.2"; sha256="1ab7nl9zrlhlkwjrjr69zqq5hy9a8rp457hcr075n8qm5r5lf6wd"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; };
  56  AnnotationHub = derive2 { name="AnnotationHub"; version="3.6.0"; sha256="1hk02q6mwx49khbhydndfa1qry8ylhmwz2dff8845a510hm0di7n"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; };
  57  AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.28.0"; sha256="0mcx09kcxccw2gkf4c3w7sxgb7v3gwbvahvx9wgq8f93q85yzg95"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; };
  58  ArrayExpress = derive2 { name="ArrayExpress"; version="1.57.0"; sha256="1fzi951mjc4kbkkvlfvwlfrpfnjckkmw4xz4m5dapy1z2jkgp8w6"; depends=[Biobase limma oligo XML]; };
  59  ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.47.0"; sha256="0fndc7xifzj2wq8si8q8zjjkly5ckgr28jrm3m887s7kivbvjzvv"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; };
  60  AssessORF = derive2 { name="AssessORF"; version="1.16.0"; sha256="125qkjsjyxp6zk3nzfamakyfgm7wd7w9vv1vn7xyyylpqpa8rpml"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; };
  61  BAC = derive2 { name="BAC"; version="1.58.0"; sha256="00dkhns9n1x4wmlxjcw75h7iwwk37zlv1c2fi0g1mmsw1xvdjzp6"; depends=[]; };
  62  BADER = derive2 { name="BADER"; version="1.36.0"; sha256="1hkvmfik4m2yw5xg4k2g551l27i64blbsdvp1kmvvyix66p53hsr"; depends=[]; };
  63  BAGS = derive2 { name="BAGS"; version="2.38.0"; sha256="0rnaahbdqpgl666w9xlm6prrrnks2k6p83r625j1lcj2v533232r"; depends=[Biobase breastCancerVDX]; };
  64  BANDITS = derive2 { name="BANDITS"; version="1.14.2"; sha256="11w0azh2g0y331imqpllnb0csjxf3gs1767cc67c1zp0ykg6yq8l"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; };
  65  BASiCS = derive2 { name="BASiCS"; version="2.10.5"; sha256="0ipbr7103sisw1pdb5pm4s5fa8g6a14s86zg01wgcinl11kb8vkh"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; };
  66  BASiCStan = derive2 { name="BASiCStan"; version="1.0.0"; sha256="1an4kiipb3y1xixynpka0k2pdsi7a4s6h2mw2yfnwab1q6qf97kj"; depends=[BASiCS BH glmGamPoi Rcpp RcppEigen RcppParallel rstan rstantools scran scuttle SingleCellExperiment StanHeaders SummarizedExperiment]; };
  67  BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.28.0"; sha256="01n9msbnr4x6hjlvz9z43lyrbxnmhi6bc655ir4cq0vizm1mk84m"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; };
  68  BCRANK = derive2 { name="BCRANK"; version="1.60.0"; sha256="01ibjaym2kyv4x0fwv8mk5mq550lm1pqgrq40spmyrgb4vnwkh0h"; depends=[Biostrings]; };
  69  BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.16.2"; sha256="1g6j9ygvzcm4dx3h27b94ws1hnhn2kj60z4c77q20ry45an9b3zs"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; };
  70  BEARscc = derive2 { name="BEARscc"; version="1.18.0"; sha256="1j430ijy2b2j5x1y276vya25pw0qrcl2q11smr394jf4b9hm60qr"; depends=[data_table ggplot2 SingleCellExperiment]; };
  71  BEAT = derive2 { name="BEAT"; version="1.36.0"; sha256="0b48ravaaqbqvw35bamalrjnp77gqf13rp11wpd86m9ghpjl4gr0"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; };
  72  BEclear = derive2 { name="BEclear"; version="2.14.0"; sha256="05znaj2fialxi937mhj2dlrm3v4j2wgqafcy78qrkz7xxn13pr01"; depends=[abind BiocParallel data_table dixonTest futile_logger ids Matrix Rcpp Rdpack]; };
  73  BGmix = derive2 { name="BGmix"; version="1.58.0"; sha256="0r4cxrjvf3qr5514lsw1s53h4by3djb9ipkz7bi979w343dn9xfx"; depends=[KernSmooth]; };
  74  BHC = derive2 { name="BHC"; version="1.50.0"; sha256="0ryd9lg8pywqlxj802y9jad5nxy40ivnzdq2ldldypwyalgk9ahm"; depends=[]; };
  75  BLMA = derive2 { name="BLMA"; version="1.22.0"; sha256="0jxxf4g0j5prarjq18ab435h963h1d7mlb4ssj2919lf98rhxl0r"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; };
  76  BOBaFIT = derive2 { name="BOBaFIT"; version="1.2.0"; sha256="0shv241jkzcyp1mydxpg6sjf74zxmc8dpsxdniw7c6arjfv4b39z"; depends=[dplyr GenomicRanges ggbio ggforce ggplot2 magrittr NbClust plyranges stringr tidyr]; };
  77  BPRMeth = derive2 { name="BPRMeth"; version="1.24.2"; sha256="1nmjqcqhnq8zvssglqqlp8k46q3x2zlvzjnrszcpy0caq4c86m88"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; };
  78  BRAIN = derive2 { name="BRAIN"; version="1.44.0"; sha256="1rp2aa7jigi8h3qa55a1pf5zj06a5fpyqxwpc92w8gb0flmmdbn8"; depends=[Biostrings lattice PolynomF]; };
  79  BRGenomics = derive2 { name="BRGenomics"; version="1.10.0"; sha256="1mdf8v2768vm1wfrcia9cs0biv51hybwa6nraddhccx25cnz1prj"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
  80  BSgenome = derive2 { name="BSgenome"; version="1.66.3"; sha256="1ps7s6i9mv8ys8k2xw8fdkh2rl2n3kcf2q4zsz6kcz5qpav95ys6"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; };
  81  BUMHMM = derive2 { name="BUMHMM"; version="1.22.0"; sha256="1llxj25bjq68963nvr4b1n84400w6qb2gaa8jv7if4w8kslv5wvf"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; };
  82  BUS = derive2 { name="BUS"; version="1.54.0"; sha256="1bv50vx4dyb1cz502nqknyss5vfh9cwnms65gcyrii5xydjxr1ch"; depends=[infotheo minet]; };
  83  BUScorrect = derive2 { name="BUScorrect"; version="1.16.0"; sha256="05a8sn7rd4d3qx46gr742aqgf0968ni2s238z0gxbg8sifjphii7"; depends=[gplots SummarizedExperiment]; };
  84  BUSpaRse = derive2 { name="BUSpaRse"; version="1.12.2"; sha256="15w2363bgllw1p6h7327qx28kip0cq7s0x7da7r56yfkm0xag4rg"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; };
  85  BUSseq = derive2 { name="BUSseq"; version="1.4.2"; sha256="0s0kkfn45nfwv92962spf7v4kax24ldnwxipkqsfk0is57312syn"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; };
  86  BaalChIP = derive2 { name="BaalChIP"; version="1.24.0"; sha256="16s67v6mkv14dkk1r7c50brm7198b84h87h1wrahmrrcnzq8pi0n"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; };
  87  BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.26.0"; sha256="0bsgdjchwsfc8aiwiacr454kw97dbymq6v450m1fx7hxmmpqz1sm"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; };
  88  BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.42.0"; sha256="07pqs0jkwcbxavc65sanvhvzc9spkk46bqnwz162f3pvrz15b5h7"; depends=[RCurl RJSONIO]; };
  89  Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.34.0"; sha256="1zzh7d9c319lfncz73i1mcldiinqfss0b2jl0nhm836ygksykc3x"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; };
  90  BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.26.0"; sha256="1yk4zpgwy5dcgimqp9w7hscvg2irgr281f8zv8rp576c8xbzqgqz"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; };
  91  BatchQC = derive2 { name="BatchQC"; version="1.26.0"; sha256="1rjqldr9vp8ppcwbclm8cvkpsncss31n449s6nsczmv517mjna1q"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; };
  92  BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.24.0"; sha256="1r4d3h6fvn946czpf81prqwycvkgmzlcypy8dl54diagvdp3dr9y"; depends=[Biobase]; };
  93  BayesSpace = derive2 { name="BayesSpace"; version="1.8.2"; sha256="0a9idbj8n3n6rw38jiicpgh69jqah9p58ag9qf8qljb4fz51y4v1"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; };
  94  BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.50.0"; sha256="0309cvc9aq4nb06zysb7jvzd844pvw6jbjiqwhar6fg01cx255j0"; depends=[]; };
  95  BgeeCall = derive2 { name="BgeeCall"; version="1.14.0"; sha256="05w6b10vc4mmwdqnkcj7vnfigk03f03n776vqhlb38k0lx8k4hk3"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; };
  96  BgeeDB = derive2 { name="BgeeDB"; version="2.24.0"; sha256="14fja1dikzq60zjx1arcv1q16qd0hmibqjy0nbaivmk3zh16spkc"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; };
  97  BiFET = derive2 { name="BiFET"; version="1.18.0"; sha256="0awzq3i7ga6jsh7xgmrpzz8klx69p8cxj73p6h7ya43bgcr0iff0"; depends=[GenomicRanges poibin]; };
  98  BiGGR = derive2 { name="BiGGR"; version="1.34.0"; sha256="07b80qpkbas3x2yhndcm6vdkba0cpricyvnjf18dxklj5j612wfy"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; };
  99  BiRewire = derive2 { name="BiRewire"; version="3.30.0"; sha256="0nr40nm87qzbni3w0cik887csc899jh7j8z82i94v15fc30vfilh"; depends=[igraph Matrix Rtsne slam]; };
 100  BiSeq = derive2 { name="BiSeq"; version="1.38.0"; sha256="0k9s0l2whvlhb2zmp7119drb8nlv8nlmipvws42vb87xb9hg4a4g"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; };
 101  BicARE = derive2 { name="BicARE"; version="1.56.0"; sha256="1z7x30705a4ww9vdam2668pk064na5ispigqnaqy8zqvlfvp3c8d"; depends=[Biobase GSEABase multtest]; };
 102  BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.4.0"; sha256="01gazqcvw9z112wlcljmb83vxz3bns9wgbfsccr54h8c957ynpbq"; depends=[dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 Gviz matrixStats plyr rtracklayer S4Vectors tibble tidyr]; };
 103  BioCor = derive2 { name="BioCor"; version="1.22.0"; sha256="0a8xyrmarb2ja5zyvx5sndd67hylmwi29gpr5lwrzinww8w8b8w6"; depends=[BiocParallel GSEABase Matrix]; };
 104  BioMM = derive2 { name="BioMM"; version="1.14.0"; sha256="06c36lpbmcz0s8v6dsjbmlmisab3h02jx67ycwlnymfwzw1hq1cb"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; };
 105  BioMVCClass = derive2 { name="BioMVCClass"; version="1.66.0"; sha256="1xclmwxps7yvqnaw8kn6z4mlpx6v8xfzyly4cadsjaj2qm535xxk"; depends=[Biobase graph MVCClass Rgraphviz]; };
 106  BioNAR = derive2 { name="BioNAR"; version="1.0.0"; sha256="1z0ln7j4ack0pv8bzxjfrq6ncsnd0jif5s42njm94c7j408fj9kz"; depends=[AnnotationDbi clusterCons dplyr fgsea ggplot2 ggrepel GO_db igraph latex2exp org_Hs_eg_db poweRlaw Rdpack RSpectra rSpectral scales stringr synaptome_db WGCNA]; };
 107  BioNERO = derive2 { name="BioNERO"; version="1.6.1"; sha256="0ijdnl43cgzywgsz80jd6q0irixh6367qm1ll5ww1rcr4xas2nsl"; depends=[BiocParallel ComplexHeatmap dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggrepel igraph intergraph matrixStats minet NetRep networkD3 patchwork RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; };
 108  BioNet = derive2 { name="BioNet"; version="1.58.0"; sha256="12c6m7dzwkdh4bk1c5xmzm5ajrsba7v62mag1f3rrpmrapdh6s0j"; depends=[AnnotationDbi Biobase graph igraph RBGL]; };
 109  BioNetStat = derive2 { name="BioNetStat"; version="1.18.0"; sha256="1h99d6gnqw5v9ha2169zfhw9cvxhyjgkf4zm8qj1i03h2cywapgv"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; };
 110  BioQC = derive2 { name="BioQC"; version="1.26.0"; sha256="1ssxsxdm8vmlrmvvdz5p98apd3xsal1h3ss8556g83kgw830zsxf"; depends=[Biobase edgeR Rcpp]; };
 111  BioTIP = derive2 { name="BioTIP"; version="1.12.0"; sha256="1n90n4vz0cwz8irwpmrkm9qcyvk5rssl2v6wrzny4zwhzjkmvlni"; depends=[cluster GenomicRanges igraph MASS psych scran stringr]; };
 112  Biobase = derive2 { name="Biobase"; version="2.58.0"; sha256="0rp541nphbcya6kbk1nzrrb05g5m6pxb3yqz5cj873di9vsqlyfv"; depends=[BiocGenerics]; };
 113  BiocBaseUtils = derive2 { name="BiocBaseUtils"; version="1.0.0"; sha256="0p6siidrx8q6qr36fc67hzi091m2zwik3zngj27yllbfz6sn5k69"; depends=[]; };
 114  BiocCheck = derive2 { name="BiocCheck"; version="1.34.3"; sha256="00z2l5jnc028bmd3rl3qmgkd6k1mfa4p68kls34mkn29ic9ls22m"; depends=[BiocManager biocViews codetools graph httr knitr stringdist]; };
 115  BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.10.0"; sha256="13l5shmiiv4wl9m5xnwzagjxqrchjg9znvcgf7hv8f263l2yc8qm"; depends=[dplyr httr memoise readr whisker]; };
 116  BiocFHIR = derive2 { name="BiocFHIR"; version="1.0.0"; sha256="1b0mychyv778cf2jmib15jpjmh83s4sjr69qrjgmv0c7kvv4msf7"; depends=[BiocBaseUtils DT graph igraph jsonlite shiny tidyr visNetwork]; };
 117  BiocFileCache = derive2 { name="BiocFileCache"; version="2.6.1"; sha256="16316a5pgyl5rppyviibf6z3k3m7xmvqyylf1kxdpg0avs6dk8w7"; depends=[curl DBI dbplyr dplyr filelock httr rappdirs RSQLite]; };
 118  BiocGenerics = derive2 { name="BiocGenerics"; version="0.44.0"; sha256="17dhr7vaph8dnvyklszyas7y8i64mxqxhnfhb6q3l47gq5if8645"; depends=[]; };
 119  BiocIO = derive2 { name="BiocIO"; version="1.8.0"; sha256="15d4xsn3k32q7lzcyxvs70f0jbh9fgwl3vi7xd6sqpggar12hh9f"; depends=[BiocGenerics S4Vectors]; };
 120  BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.16.0"; sha256="09f00rf5gwwlxxaycsciq4l53gjg5kjayx8xzhns2yf1fv297j9p"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; };
 121  BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.18.0"; sha256="1x4mzzjvjgcxg5xyxjib8r2n55hpf2vzcci0xkb7d8frakfncn9s"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; };
 122  BiocParallel = derive2 { name="BiocParallel"; version="1.32.6"; sha256="1aq3b5fjs8j0d6nf3992a6gnzvmmaxbbkrj1im0k6ppsqac6dlj0"; depends=[BH codetools cpp11 futile_logger snow]; };
 123  BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.16.1"; sha256="0cl88adkbxv7sz07b8h5qpwwkwg85jx6xjinkd0yjac4xm7s4lyf"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rorcid rvest stringr tibble xml2]; };
 124  BiocSet = derive2 { name="BiocSet"; version="1.12.1"; sha256="1cqp5m6yic5vsp8k05r50sx2cmi9cwzxfmlswcjw28nascq3gpv0"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; };
 125  BiocSingular = derive2 { name="BiocSingular"; version="1.14.0"; sha256="041izymcifvi0pa97fh5000bwlyl0mdk9003i5bbvlld6mbbv2kk"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; };
 126  BiocSklearn = derive2 { name="BiocSklearn"; version="1.20.1"; sha256="17hgqy6n38ga221p5sxhbsahhbs81bmyx1vfg127cx3dpv5lq5vd"; depends=[basilisk reticulate SummarizedExperiment]; };
 127  BiocStyle = derive2 { name="BiocStyle"; version="2.26.0"; sha256="092hpmyhra755j32vc8w2l6xqwg09jm8apnk5rvxi1cm5034yvsl"; depends=[BiocManager bookdown knitr rmarkdown yaml]; };
 128  BiocVersion = derive2 { name="BiocVersion"; version="3.16.0"; sha256="1djp23y131dyx4g22f9r7an177bq0mky94bvpqvc8b14166g0ynw"; depends=[]; };
 129  BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.24.0"; sha256="00cy5lqmfap57bm2s00bis9ddci2lv1lrp0mk5ydgx061p4ym29i"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; };
 130  Biostrings = derive2 { name="Biostrings"; version="2.66.0"; sha256="1z86s8ncl91pxcjnv8fwvgwjjnd384dn5paylwyymrigph4ca4kk"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; };
 131  BitSeq = derive2 { name="BitSeq"; version="1.41.0"; sha256="185cssrvaw2x0r3y5fqnfqm31924ccwg33qpj3v8ywrh3x7qn22p"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; };
 132  BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.6.0"; sha256="01hxz2y906lx848pw64j78bwzm5yx9cjw0yshicnv0n2kbw1w53g"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; };
 133  BrainSABER = derive2 { name="BrainSABER"; version="1.8.0"; sha256="1nxcjvaip7pp387bhdc2pmjai3chib1n63ig0cslhppzzjp2y6jd"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors shiny SummarizedExperiment]; };
 134  BridgeDbR = derive2 { name="BridgeDbR"; version="2.8.0"; sha256="03zpgd836c4qdbp8fmz0yb20pdyszs2pra9ih3b68pv4b6rx25jz"; depends=[curl rJava]; };
 135  BrowserViz = derive2 { name="BrowserViz"; version="2.20.0"; sha256="010hmaba81swqsv0nqzs3ybg31n0b9zyjgxgp270az4bkrw59gjs"; depends=[BiocGenerics httpuv jsonlite]; };
 136  BubbleTree = derive2 { name="BubbleTree"; version="2.28.0"; sha256="0rw7127hgpzw7akga8daw6gzlqfamx347l53v6sx05xdgn451097"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; };
 137  BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.62.0"; sha256="08b8pm1vkwvkbv3dqldb9h1n7aiwih7dw66w8ag1xjp0sn9v9d7d"; depends=[]; };
 138  BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.62.0"; sha256="1b0c0dick3gxdlrfjgx4dpgaqry5rd9gmpvdinfs94f9bfp89xyf"; depends=[BufferedMatrix]; };
 139  BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.6.0"; sha256="1w7vfmpjhm2jdykzfqkfwz0hg52c3h1d3kq3j0mh340l0pc0bdzx"; depends=[IRanges Matrix S4Vectors]; };
 140  CAEN = derive2 { name="CAEN"; version="1.6.0"; sha256="04zdsvkdb532l9bnm14p5ycq4wjqgvvjsr9cq6gwsa87ly1wf72l"; depends=[PoiClaClu SummarizedExperiment]; };
 141  CAFE = derive2 { name="CAFE"; version="1.34.0"; sha256="03riynxr0gqf5qapplr78sffbdv52x3vp6x5yjzai09xhky9qa7s"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; };
 142  CAGEfightR = derive2 { name="CAGEfightR"; version="1.18.0"; sha256="1iw8bf7dcgg3vd5l29pcrvbrx3ksc3dlp5nbhcfcqp5mgr65j4ny"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; };
 143  CAGEr = derive2 { name="CAGEr"; version="2.4.0"; sha256="1lcajai32pnnjv4yp6flblv37a0f54mz4sxv6jljpgw6iyfy49p0"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; };
 144  CAMERA = derive2 { name="CAMERA"; version="1.54.0"; sha256="17ygir00xjjxwlgmlxm0sw5sf645fxabjdziw4ja1ia641cpd6mm"; depends=[Biobase graph Hmisc igraph RBGL xcms]; };
 145  CARNIVAL = derive2 { name="CARNIVAL"; version="2.8.0"; sha256="0qdydrrdim99aggm001380r8g6vny4wxb6kx2dbhk7b283whx0q3"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr tibble tidyr]; };
 146  CATALYST = derive2 { name="CATALYST"; version="1.22.0"; sha256="0n3x5w074x5hhgdf2qa0pkma4vrjwrcgjna7hx0az6ixkgpbkrpv"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; };
 147  CBEA = derive2 { name="CBEA"; version="1.2.0"; sha256="0nycc7xql3f589pwdzw19pmvbhz3zxa88dkdq0746di9agn6wfdd"; depends=[BiocParallel BiocSet dplyr fitdistrplus generics glue goftest lmom magrittr mixtools Rcpp rlang SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; };
 148  CCPROMISE = derive2 { name="CCPROMISE"; version="1.24.0"; sha256="1iwvmw7k64n41qggxjxk3jbhrhpdnwfgn6vbm3cy467kpfzbzrzg"; depends=[Biobase CCP GSEABase PROMISE]; };
 149  CEMiTool = derive2 { name="CEMiTool"; version="1.22.0"; sha256="15dm4ajhnf7wv1cs6kfpp4sxfqyl0x11d1bzjagwxk7c911p4a8x"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; };
 150  CFAssay = derive2 { name="CFAssay"; version="1.32.0"; sha256="0lm7281d7gvdlkk35195zi2kjs0xj7jnr3gwkjgrvn6qhi0dk2vr"; depends=[]; };
 151  CGEN = derive2 { name="CGEN"; version="3.34.3"; sha256="0viymdgfnc16mihi31fd5wpbbr57b3kaz55p9sg2rzrw3br6cqyq"; depends=[mvtnorm survival]; };
 152  CGHbase = derive2 { name="CGHbase"; version="1.58.0"; sha256="01n1z525h4h6yr3jfalgjg2g6lhd77sc3n33q0485x7l6xqv1dvp"; depends=[Biobase marray]; };
 153  CGHcall = derive2 { name="CGHcall"; version="2.60.0"; sha256="0860w2vf662qqii09pjdx85yl346jcldxiikhbwv0vg86blwb2g2"; depends=[Biobase CGHbase DNAcopy impute snowfall]; };
 154  CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.52.0"; sha256="08s3mdsaqv92f6mjj4mg1m7b13zpfm7c144mv754pnpfay2slw88"; depends=[Biobase CGHbase CGHcall]; };
 155  CGHregions = derive2 { name="CGHregions"; version="1.56.0"; sha256="1r6zi99jfq14jgw4v7nvad2fans0nd08xyg03qmc1j37hsnac769"; depends=[Biobase CGHbase]; };
 156  CHETAH = derive2 { name="CHETAH"; version="1.14.0"; sha256="0cizc0i5gqbn12kd4l5ym35w3k2ydqf0nmdhn7p3486ivp81f5rq"; depends=[bioDist corrplot cowplot dendextend ggplot2 pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; };
 157  CHRONOS = derive2 { name="CHRONOS"; version="1.26.0"; sha256="0akw9l0l23kc18d9m5sgfcsnc22py07k77l0wqikpsyjzvvj94aw"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; };
 158  CIMICE = derive2 { name="CIMICE"; version="1.6.0"; sha256="0w3rx643ing2i1b71fhcmqm9pbrw7q206lk7ncml3gaaw13lf6hc"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; };
 159  CINdex = derive2 { name="CINdex"; version="1.26.0"; sha256="186akmq5s81849pa56f3cqdacrmip2h9i0n67qkv9jnxk1l3h2x3"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; };
 160  CMA = derive2 { name="CMA"; version="1.56.0"; sha256="13qdhg5w1yga5sb4vack2srx5ly126g740wbxb55cg1kyqnzs1pd"; depends=[Biobase]; };
 161  CNAnorm = derive2 { name="CNAnorm"; version="1.44.3"; sha256="1xzlxqmipyky86gh169njil8jvha0rnz9cgby1grzwlm5kjqqxsa"; depends=[DNAcopy]; };
 162  CNEr = derive2 { name="CNEr"; version="1.34.0"; sha256="15y27ca14fdhn2prqgkyikff7p7490xn0bp2c7cnwhw173mm1syw"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; };
 163  CNORdt = derive2 { name="CNORdt"; version="1.40.0"; sha256="0ybxps1dnl7v7p68vkxqjr7f7zbmaqnh9x2gq1vzhcgzv767p1jz"; depends=[abind CellNOptR]; };
 164  CNORfeeder = derive2 { name="CNORfeeder"; version="1.38.0"; sha256="0y8wmm4sb28k4hk9cc59wqk1im79z13ahm232dcqh78772cw5w0h"; depends=[CellNOptR graph]; };
 165  CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.40.0"; sha256="1d5ckcmj9dzxi5qxny0yqb6ygh0aqxfm31ccnr38awr9y2ysp9n1"; depends=[CellNOptR nloptr]; };
 166  CNORode = derive2 { name="CNORode"; version="1.40.0"; sha256="1f1699gwfvwsqmv7154h44jli5i49y8skha7p8mvawxm1cr86mg0"; depends=[CellNOptR genalg knitr]; };
 167  CNTools = derive2 { name="CNTools"; version="1.54.0"; sha256="18rl79i66z8d3addinp76krnyp9hzvprrihrksvcjkvrrl14adaz"; depends=[genefilter]; };
 168  CNVMetrics = derive2 { name="CNVMetrics"; version="1.2.0"; sha256="11i47ml2y5s8adh3qysasjl8b3w4xhg5h7v9rcdmd1hysjl4d4hi"; depends=[BiocParallel GenomicRanges gridExtra IRanges magrittr pheatmap S4Vectors]; };
 169  CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.30.0"; sha256="02k6bbzaj7q87nsg9zqda8dz44q3wshsps5pzm2764gxcwn4sz0z"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; };
 170  CNVRanger = derive2 { name="CNVRanger"; version="1.14.0"; sha256="1if6k9iakrvq0fw6j2xpd26l13ikkpni8px3w76c9z0wsvbjf0cc"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; };
 171  CNVfilteR = derive2 { name="CNVfilteR"; version="1.12.2"; sha256="07jjrzkf8bk20wb8wiw155bq0dhgnz24bhwzsdh2dakirmjhfpzb"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; };
 172  CNVgears = derive2 { name="CNVgears"; version="1.6.0"; sha256="0gqw8l7pswamjm4j1jr8ri1rpf31szlx9ba6b99j3iypisxq1r1r"; depends=[data_table ggplot2]; };
 173  CNViz = derive2 { name="CNViz"; version="1.6.0"; sha256="1nm8k4ry8p6k8cb6bqi6dyffi48fyhv1gq1277cz1nys31y0pdnv"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; };
 174  CNVrd2 = derive2 { name="CNVrd2"; version="1.36.0"; sha256="0jr9m08ip17l9w9i62nqdv13p5f3s7n0zyj4y3vy671s6c1syfiv"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; };
 175  COCOA = derive2 { name="COCOA"; version="2.12.0"; sha256="01879lxdzxbg77sd5r8rw59kaa9s5jrsfnd2na68hsv41vhs64xf"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; };
 176  CODEX = derive2 { name="CODEX"; version="1.30.0"; sha256="1wrxzdk0ldkb2svgi84gvmkg97m3fv71937harzhmwhfwbk2mlc6"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; };
 177  COHCAP = derive2 { name="COHCAP"; version="1.44.0"; sha256="0nmnvnz8qli5xxzdnps0ndyjniixd4qpm8kbigmyqi0zviha588i"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; };
 178  COMPASS = derive2 { name="COMPASS"; version="1.36.2"; sha256="0bszxfwayqnkpp715r1c2pwwkavwh8dfqlr41k6aqjbn230aniv6"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; };
 179  CONFESS = derive2 { name="CONFESS"; version="1.26.0"; sha256="10yz0nwssgak0gndw9py5yksdq1syb7dfa33kvkhf5ljwyxf955c"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; };
 180  CONSTANd = derive2 { name="CONSTANd"; version="1.6.0"; sha256="1mkzmjqsm9kqlabw50d8jn0jqx2iad1wn10il4j473bhamanwqg4"; depends=[]; };
 181  CORREP = derive2 { name="CORREP"; version="1.64.0"; sha256="07pr5v8sqzlvag1yapaz01pl54c8ab1gdq2hinhwv2kiyyxpkq11"; depends=[e1071]; };
 182  COSNet = derive2 { name="COSNet"; version="1.32.0"; sha256="1w1rh8c7nwxwi9szkij1k675dp0rg0li2ppzskkwpxm6vddyspm8"; depends=[]; };
 183  COTAN = derive2 { name="COTAN"; version="1.2.0"; sha256="1i19p2a3c1z7j4fc88k2ynvk7siwbl320jhlnm2b3giim7rs9xp9"; depends=[circlize ComplexHeatmap dplyr ggplot2 ggrepel irlba Matrix Rfast rlang scales tibble tidyr]; };
 184  CRISPRseek = derive2 { name="CRISPRseek"; version="1.38.0"; sha256="1658awsdc1qqm3qss3h8cbnapahn9rd476rhfsrckcq7gdqqg69h"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; };
 185  CRImage = derive2 { name="CRImage"; version="1.46.0"; sha256="0m097an8v06nx3alyj1gxz6i6g33ryrk1wc6pxia9kdb11rwzwkq"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; };
 186  CSAR = derive2 { name="CSAR"; version="1.50.0"; sha256="09js7lh1ga8l3kfkqc2vzrg83r3jckhcr5fdx1078sp2rc1dpv2y"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
 187  CSSP = derive2 { name="CSSP"; version="1.36.0"; sha256="1hnpg6ba73h5r83g8ziiwcai8blan5piir8n1r7rnf6ixr20f352"; depends=[]; };
 188  CSSQ = derive2 { name="CSSQ"; version="1.10.0"; sha256="11msiwpk2swb5ijs59adp794fa50c42v6sb2i4hgpiayqfbmiiig"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
 189  CTDquerier = derive2 { name="CTDquerier"; version="2.6.0"; sha256="15p4fb3p1i3i2fy0n3qz8p9psikhdfk59wdypn0rivmp0g35rvdi"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; };
 190  CTSV = derive2 { name="CTSV"; version="1.0.0"; sha256="11simigbrqlmr4b3ywi83zb6jc4f21ava9vyyk5y4qfndn16lijh"; depends=[BiocParallel knitr pscl qvalue SpatialExperiment SummarizedExperiment]; };
 191  CancerInSilico = derive2 { name="CancerInSilico"; version="2.18.0"; sha256="0szbz88wnr3dbf7k9bhihv6hkr29gsp9vrllr201wx5qfzl2gncy"; depends=[BH Rcpp]; };
 192  CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.24.0"; sha256="1dp7h2bgpiy9ywv4l9gii1pkm1z7zsilpadb3l2piyd3r747dwy1"; depends=[cluster ConsensusClusterPlus impute limma NMF sigclust survival]; };
 193  Cardinal = derive2 { name="Cardinal"; version="3.0.1"; sha256="0n8760dfwc5qna6v4b7sxwr20rk10pj2alp259ypgmpb2ryk01sl"; depends=[Biobase BiocGenerics BiocParallel EBImage irlba magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; };
 194  Category = derive2 { name="Category"; version="2.64.0"; sha256="1j62b3ycvb27p80k1a1qj4pdf8cjynf5fkj65v74c3l1hgl9qxnh"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; };
 195  CausalR = derive2 { name="CausalR"; version="1.30.0"; sha256="0nxiwnln696v3hw1m19whpajzqfb6y0c9dn3v154l7n84v0j5wd2"; depends=[igraph]; };
 196  CeTF = derive2 { name="CeTF"; version="1.10.2"; sha256="12sylkz8spvpbbb3rbibbsnv7g2b795h1n9bfxjf51yykdcknrb3"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; };
 197  CellBarcode = derive2 { name="CellBarcode"; version="1.4.0"; sha256="0kiariwn252ri27gsdy7924i98akx8bmpgr76f7s395hrhlrc36d"; depends=[BH Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp S4Vectors seqinr ShortRead stringr zlibbioc]; };
 198  CellBench = derive2 { name="CellBench"; version="1.14.0"; sha256="0p5bs7v5ya31z0hxaw52ccx8qv8yq86q6k0qcd2z20fia0f9471v"; depends=[BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; };
 199  CellMapper = derive2 { name="CellMapper"; version="1.24.0"; sha256="172bmzk5g18slvym5w557c9wy7irb0mp81kanwn1csk0va3cl9pc"; depends=[S4Vectors]; };
 200  CellMixS = derive2 { name="CellMixS"; version="1.14.0"; sha256="1nl39wrrfp7kfxmm0m2n1x9rgwyykxpkmbpgvipgs5rp818ghalg"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; };
 201  CellNOptR = derive2 { name="CellNOptR"; version="1.44.0"; sha256="1ym74v3kq6656vvd02y1m2czil9mgdr1bay3q6zlgcygmllq8n14"; depends=[ggplot2 graph igraph RBGL RCurl Rgraphviz rmarkdown stringi stringr XML]; };
 202  CellScore = derive2 { name="CellScore"; version="1.18.0"; sha256="1790p98zhjl3lpm4xcn3rjwizmzgpylzk7c0ndn5hlrz5ck3qmbm"; depends=[Biobase gplots lsa RColorBrewer squash]; };
 203  CellTrails = derive2 { name="CellTrails"; version="1.16.0"; sha256="02jwp5ypp32hs8sxgi8ifv62sadlpgd8g8i6i03yahwz7pd8d3ry"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; };
 204  CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.8.0"; sha256="144d1h73x4gbymjka5a4i5nvqj7fmmhw9kdq1a9qmf0bah2xwcv0"; depends=[BiocGenerics Biostrings dplyr forcats generics glue Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; };
 205  CelliD = derive2 { name="CelliD"; version="1.6.2"; sha256="0dh9nn8kx6fsiqjakm2abx9cz19ppqz8c0wly5lhj54gfnmri7gc"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; };
 206  Cepo = derive2 { name="Cepo"; version="1.4.0"; sha256="07ymk3kw0r8sdk3fyssh93ap3fx2xq5mhznksdvi2i1k4rv2pc07"; depends=[BiocParallel DelayedArray DelayedMatrixStats dplyr ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; };
 207  CexoR = derive2 { name="CexoR"; version="1.36.0"; sha256="0bd3kd3d67h3wbp7wbccwqppm3pfmvb45k4k13w772mawzr2k6ja"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; };
 208  ChAMP = derive2 { name="ChAMP"; version="2.28.0"; sha256="10ss0a3miqrx92vy1r1h5rv3mnjn4iyl32q86s0x59d3fvqp2cx1"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; };
 209  ChIC = derive2 { name="ChIC"; version="1.18.0"; sha256="1z00d2952qwscx5ljr7zvxm6kydmk188iiky0zprxl9hzp69iv17"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors]; };
 210  ChIPComp = derive2 { name="ChIPComp"; version="1.28.0"; sha256="1wnc7zrnnxk3nlk2l9y4il75dzirndp4vs5ivxn5rzqr6p7h4bhw"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; };
 211  ChIPQC = derive2 { name="ChIPQC"; version="1.34.1"; sha256="18kggxvmjjgnkgyx6p7l5n3f7v5smqyamg91b1jp204i8idmw3a9"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; };
 212  ChIPXpress = derive2 { name="ChIPXpress"; version="1.42.0"; sha256="06yg5fvq0z63iz9jfpjl4bd5bzppz8ai9j3am1m5h1632xdlp3bh"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; };
 213  ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.20.0"; sha256="04gdhzvhqnq2w0dcx2153bkg2ywrmz2zjg323sajl1gm32dn036g"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RColorBrewer RcppRoll ROCR rtracklayer S4Vectors]; };
 214  ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.22.0"; sha256="0k4vbdwpp7z06fzjgqnmrx2yllayc0z2baj26bh4vji5vb48k9ik"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; };
 215  ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.32.0"; sha256="13syh3mvqpaqgfndcrwdmn7815f4myxhzjga9a9q3lspci25rvy6"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; };
 216  ChIPseeker = derive2 { name="ChIPseeker"; version="1.34.1"; sha256="0jr9mc79di0r3xrc7m27vwk85qa4fpcwp4nb77pr9s6jbv23773r"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; };
 217  ChIPseqR = derive2 { name="ChIPseqR"; version="1.52.0"; sha256="0h4bb676s8xz57pcwp421563fxapqpkxisikrjk6z5vb8c5az7vi"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; };
 218  ChIPsim = derive2 { name="ChIPsim"; version="1.52.0"; sha256="1g0i15lijpl0wrzcr9difblh6zi4ba1p2c5kvdgqjjnw5gc7c09i"; depends=[Biostrings IRanges ShortRead XVector]; };
 219  ChemmineOB = derive2 { name="ChemmineOB"; version="1.36.0"; sha256="0jm2igxkxzyfl6phxa1305cddfgslbrydbr26ngwy5403vhnfg1w"; depends=[BH BiocGenerics Rcpp zlibbioc]; };
 220  ChemmineR = derive2 { name="ChemmineR"; version="3.50.0"; sha256="0rk4ydanqxjh5yj0m9qlj06a12j7rkx9gxv6x7zpiyvnscahw63i"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; };
 221  Chicago = derive2 { name="Chicago"; version="1.26.0"; sha256="1b24iiy6d5kzpixgpdkg4s1cb50jdrmgn9sjgvwr1qinckwz6zdn"; depends=[data_table Delaporte Hmisc MASS matrixStats]; };
 222  ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.52.0"; sha256="1kfm73kma072g2hd4r65d7nq0ydnar7c63j658vjxi2r05yr6iaw"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; };
 223  ChromSCape = derive2 { name="ChromSCape"; version="1.8.0"; sha256="0zvvc826zqi88gr2m4lzgmc2mgh83f9vc6f033l77a367v7p5cnk"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges gggenes ggplot2 ggrepel gridExtra IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist stringr SummarizedExperiment tibble tidyr umap viridis]; };
 224  CircSeqAlignTk = derive2 { name="CircSeqAlignTk"; version="1.0.0"; sha256="0jc63nmlkvx829h85fk8wh9sma200hv0g3a94slxhdiidnjph7l6"; depends=[BiocGenerics Biostrings dplyr ggplot2 IRanges magrittr Rbowtie2 Rhisat2 rlang Rsamtools S4Vectors ShortRead tidyr]; };
 225  CiteFuse = derive2 { name="CiteFuse"; version="1.10.0"; sha256="04zf5bvwqgr8rk4mzdglrbys62qsqgm4d5yzn2gpyk74qb8jcbir"; depends=[cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap randomForest reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; };
 226  ClassifyR = derive2 { name="ClassifyR"; version="3.2.7"; sha256="1wwibaynddm61g30vnwjw99bpp219v70ngj1ipgjjqd96wgj9pl4"; depends=[BiocParallel dplyr genefilter generics MultiAssayExperiment ranger rlang S4Vectors survival tidyr]; };
 227  Clomial = derive2 { name="Clomial"; version="1.34.0"; sha256="03xbkszrp760d7qzfflzrcj9hq42r1w2692nzsdzs7c5d4pcavss"; depends=[matrixStats permute]; };
 228  Clonality = derive2 { name="Clonality"; version="1.46.0"; sha256="13fnw8l11gzvsn95kcskd0q064nay04x9q12h7wb2n9wbmi7s4av"; depends=[DNAcopy]; };
 229  CluMSID = derive2 { name="CluMSID"; version="1.14.0"; sha256="0lgajn2zyanz8fjq9rmhc6pmg3f32zsb6n9b4n60kx2wva3jmna9"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; };
 230  ClusterJudge = derive2 { name="ClusterJudge"; version="1.20.0"; sha256="0qbd2hq6phs6vkvz63xdr3xmil9fngaphh3a5s452p0sk8ijzrj2"; depends=[httr infotheo jsonlite lattice latticeExtra]; };
 231  ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.26.0"; sha256="1sa5nddssny2nhylm0560nm4bddn8irckanr0fj0s0klsmssrsl2"; depends=[pracma princurve RColorBrewer scatterplot3d]; };
 232  CoCiteStats = derive2 { name="CoCiteStats"; version="1.70.0"; sha256="11p7gz6bzc8znjqhpa0wj8fyh2f1xi0f53vfihivl7ladyml19lz"; depends=[AnnotationDbi org_Hs_eg_db]; };
 233  CoGAPS = derive2 { name="CoGAPS"; version="3.18.0"; sha256="0cc9anznijn3klfkp6hiqzwxwq3la9k5k6c88h37x9zh9r7sdp4a"; depends=[BH BiocParallel cluster gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; };
 234  CoRegNet = derive2 { name="CoRegNet"; version="1.36.0"; sha256="0z9b7azardbfqkwdn5bd2wnja6xzxm9qfhpcaar9xp45mz0a34h7"; depends=[arules igraph shiny]; };
 235  Cogito = derive2 { name="Cogito"; version="1.4.0"; sha256="14xaf6kfxj46fp4v1d35am700r5isn1h026ai3y85l5ilrhb4kky"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; };
 236  ComPrAn = derive2 { name="ComPrAn"; version="1.6.0"; sha256="1zn93iwmayrqwsk94bcswm295ihn0v3yksliq7w92y6abb4vx4yh"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; };
 237  ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.14.0"; sha256="1mf0h2j31m57jd3s1sj8ijn9wdgbg452d79drdkxypxqvpm7b927"; depends=[circlize clue codetools colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; };
 238  CompoundDb = derive2 { name="CompoundDb"; version="1.2.1"; sha256="0f7jj0bphgjjba7dgrmgar6l3zv8ln3dsaq2adcy22hkryfidm55"; depends=[AnnotationFilter Biobase BiocGenerics ChemmineR DBI dbplyr dplyr IRanges jsonlite MetaboCoreUtils MsCoreUtils ProtGenerics RSQLite S4Vectors Spectra tibble xml2]; };
 239  ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.62.0"; sha256="15cz3bbl21vzf5xn5xb791sy2yvzir7h4fdqm0a5anhbh8jg0iaq"; depends=[ALL Biobase cluster]; };
 240  CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.14.0"; sha256="1pbi17z8fmyr0n8yvvpa5lw36pqb4mv6apcakdq39s7wzzczgpms"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; };
 241  CopywriteR = derive2 { name="CopywriteR"; version="2.29.0"; sha256="1h4cyrjwdazgk49yzi9lvya8bfz9r4cpq19hyzikvc81ia8zdxs6"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; };
 242  CoreGx = derive2 { name="CoreGx"; version="2.2.0"; sha256="0j10crmgsi0sm3cx27qbnl8d9yfn9w4wpkqaqdizpj3g5bby3knd"; depends=[bench Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; };
 243  Cormotif = derive2 { name="Cormotif"; version="1.44.0"; sha256="1wbqycmmi307z61fwi2smaavh9rwjd65ifbrwkb2wlhffnnp0852"; depends=[affy limma]; };
 244  CoverageView = derive2 { name="CoverageView"; version="1.36.0"; sha256="0cqvwp0ybxgnk9kif3ly780v23pwv4cyh46kk47gxcxqqkjv36ld"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
 245  CrispRVariants = derive2 { name="CrispRVariants"; version="1.26.0"; sha256="184bn5gyjj0s7wpnyrqxrsh47f7f9w020p5fbhbi48nnks38j7ca"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; };
 246  CyTOFpower = derive2 { name="CyTOFpower"; version="1.4.0"; sha256="0g3629xi5hvkds2ixibr9p2ipjyr341nksafh38ap2w870whc31j"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; };
 247  CytoDx = derive2 { name="CytoDx"; version="1.18.0"; sha256="1w5xy40wpyw6fj42zj2zf79r0kkdhn6h7wxzilh1dhnqkd0k8ay1"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; };
 248  CytoGLMM = derive2 { name="CytoGLMM"; version="1.6.0"; sha256="1vvzw440blicfmdidr1sh8wiyfwmgrhmvazikm4f7g8jcw0cn9dm"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang stringr strucchange tibble tidyr]; };
 249  CytoML = derive2 { name="CytoML"; version="2.10.0"; sha256="105vdmwwglknwk7x7cb6b2jf6bngbxsly0ymjf8175p2lfv98jsa"; depends=[BH Biobase cpp11 cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite openCyto RBGL Rgraphviz Rhdf5lib RProtoBufLib tibble XML yaml]; };
 250  DAMEfinder = derive2 { name="DAMEfinder"; version="1.10.1"; sha256="1cgykb70mxnhilwwp1jr4dr523zvjxpix173s4ldfh49064gzwc1"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; };
 251  DAPAR = derive2 { name="DAPAR"; version="1.30.6"; sha256="1z0p3aiypi5lpa4nam45klcf9dq8k18aig917w0v73ix3l88bmad"; depends=[Biobase DAPARdata foreach highcharter MSnbase]; };
 252  DART = derive2 { name="DART"; version="1.46.0"; sha256="08nmnnvz4iy70jsd0cnp41mzh2l9mccxnf62lbrhm95kxpsyaxvj"; depends=[igraph]; };
 253  DECIPHER = derive2 { name="DECIPHER"; version="2.26.0"; sha256="01hzxd5f5v2kspx5jd7l21bn87cfgm9aah3zd4d6kyxv98h5a3n1"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; };
 254  DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.18.0"; sha256="12gw9b0gdwyih51j2gzay6vxhycgc52n8svd0slv6wsbw5rc19lh"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; };
 255  DEFormats = derive2 { name="DEFormats"; version="1.26.0"; sha256="1mcjwck06akl8zm6bkrcjqvqrfdzrcd59qvnxw5iri46i8vd7jac"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; };
 256  DEGraph = derive2 { name="DEGraph"; version="1.50.0"; sha256="1g0hbkwr0fwgy9zryn3bmp1lfqpplqh3489bb1z7w12sydphi5ik"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; };
 257  DEGreport = derive2 { name="DEGreport"; version="1.34.0"; sha256="0i75hdainn9sppvix2j2m0faprq1ajdkjm8bl2h1hxq8s7djmq6c"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; };
 258  DEGseq = derive2 { name="DEGseq"; version="1.52.0"; sha256="15x3hb767j1s9snx3zk2vbyz3nvb33gsilpkidcncswj140h9cr6"; depends=[qvalue]; };
 259  DEP = derive2 { name="DEP"; version="1.20.0"; sha256="13c1g4dqbrvw1cjfgxjgc5rwp5zvfrh5sghjlpzssc0l5m5y5c7s"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; };
 260  DEScan2 = derive2 { name="DEScan2"; version="1.18.2"; sha256="1d3vpq22lbqkcskz673bws3y9cmrfhk6j3p45hkf6yiwj0w54z0s"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; };
 261  DESeq2 = derive2 { name="DESeq2"; version="1.38.3"; sha256="0kryg9jb6zl4zj1wx09rmljqlhr5vdbcmdnri4q91jpggsaj9nxm"; depends=[Biobase BiocGenerics BiocParallel geneplotter GenomicRanges ggplot2 IRanges locfit matrixStats Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; };
 262  DEWSeq = derive2 { name="DEWSeq"; version="1.12.0"; sha256="0y3v46ib9g581mkmhjr8avqj1lw2kgn9wdgylpggfvbv9wfyjkwc"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; };
 263  DEXSeq = derive2 { name="DEXSeq"; version="1.44.0"; sha256="01728hag1c5fh4n0v57k1p9ss5rqgckab4cnj5flp750myi1fbps"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; };
 264  DEqMS = derive2 { name="DEqMS"; version="1.16.0"; sha256="0v0jaynssmf8pyyjkdr3yg5p7y6zpjikwl5hdv2k7i52lnimr2r0"; depends=[ggplot2 limma matrixStats]; };
 265  DEsingle = derive2 { name="DEsingle"; version="1.18.1"; sha256="1lr33vawcyayzwclnrpqzqk2qdflzxrvddm8nr7jjh2zi907cvhy"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; };
 266  DEsubs = derive2 { name="DEsubs"; version="1.24.0"; sha256="0z2ghrmnr4cmzw5vrqjf351p09vprir9kwwish65byifw4s65rv9"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; };
 267  DExMA = derive2 { name="DExMA"; version="1.6.0"; sha256="04j5h3ijmhzkgs02r0vsq3p00i4ydcnnis4kn1a69bp3x1bnv0n9"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr RColorBrewer scales snpStats sva swamp]; };
 268  DFP = derive2 { name="DFP"; version="1.56.0"; sha256="1pkg4461ib1iplcrlwkwrqzdzqixj2rhwwfkhjw87z4rx04hz3gf"; depends=[Biobase]; };
 269  DIAlignR = derive2 { name="DIAlignR"; version="2.6.0"; sha256="04kpdab8h0krxqzsxl3sb1gsxqwrrdpsn7irgdpns8qqjlzcbzv5"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; };
 270  DMCFB = derive2 { name="DMCFB"; version="1.12.0"; sha256="00j362frx70vj326xjppkzfd36mvfq3ym58dnckz3c0jb2dxv3wr"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors SummarizedExperiment tibble]; };
 271  DMCHMM = derive2 { name="DMCHMM"; version="1.20.0"; sha256="1cf5i3ikn81qw0s3kbx2yl15fmgwal22yqpys8wya8pd2agbi4lj"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; };
 272  DMRScan = derive2 { name="DMRScan"; version="1.20.0"; sha256="1mx0kk1rbn0mkk94mm1a7mk64ia315fvwwb34adyslmyq5gq93i5"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; };
 273  DMRcaller = derive2 { name="DMRcaller"; version="1.30.0"; sha256="03d7rl5z1pxdwxya53mkf8a8n9jzp8rb8awhfhfd22dgdf2l327h"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; };
 274  DMRcate = derive2 { name="DMRcate"; version="2.12.0"; sha256="0iphlsbam5fcxbj5j0cmqk3wz5ykwz0mvk3qbrhzxbpf2h4w2qib"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; };
 275  DMRforPairs = derive2 { name="DMRforPairs"; version="1.34.0"; sha256="1amrbmijqv0w96qc813abl12xr3sz8a92gfjwg7zm7l7dz2gjss9"; depends=[GenomicRanges Gviz R2HTML]; };
 276  DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.14.0"; sha256="1kjfpysf70lxc2sw0ggrnir91d6kl9gvc6vhx3ivzxah92zvp643"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; };
 277  DNABarcodes = derive2 { name="DNABarcodes"; version="1.28.0"; sha256="18sivwzl8gk52dnhwls0i4imw78rkjlwbfrcaas1i53q0bmw15i5"; depends=[BH Matrix Rcpp]; };
 278  DNAcopy = derive2 { name="DNAcopy"; version="1.72.3"; sha256="1kxzrny19dqd9pqj27vzr15i071sl8ivznpfd6zlqhcymlcsq7nw"; depends=[]; };
 279  DNAfusion = derive2 { name="DNAfusion"; version="1.0.0"; sha256="1b1k5gs1rfk02p9j7xl186ynvsxax8sc2l9r8vwr53w37x3fzh43"; depends=[bamsignals BiocBaseUtils GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; };
 280  DNAshapeR = derive2 { name="DNAshapeR"; version="1.26.0"; sha256="0cj1nff3kn0d5djddapn37gi47739c69r61wp9v3bcvwcvq6nlqa"; depends=[Biostrings fields GenomicRanges Rcpp]; };
 281  DOSE = derive2 { name="DOSE"; version="3.24.2"; sha256="0scp6sgb1iwwfh7gdak4dxf1hb870745km9nc9hga8pnsnqi5v3g"; depends=[AnnotationDbi BiocParallel fgsea ggplot2 GOSemSim HDO_db qvalue reshape2]; };
 282  DRIMSeq = derive2 { name="DRIMSeq"; version="1.26.0"; sha256="0cj3fyb99fh30f35ra1gpvzwplszbwvwk33ppgyh1zx2axsx164w"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; };
 283  DSS = derive2 { name="DSS"; version="2.46.0"; sha256="1qm0pq6495fn2zrbddaadb1w01ry76rg8mmbmxf3zws9pww48jgf"; depends=[Biobase BiocParallel bsseq]; };
 284  DTA = derive2 { name="DTA"; version="2.44.0"; sha256="0s7z24ka29ki3gvx0831k4cxlnismk6gh92rqg3sx4qk4srlplhx"; depends=[LSD scatterplot3d]; };
 285  DaMiRseq = derive2 { name="DaMiRseq"; version="2.10.0"; sha256="10qpr9p6sqljq05rc2gkh45yh5rsmkh51prqq349b3733d1ld03y"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; };
 286  DeMAND = derive2 { name="DeMAND"; version="1.28.0"; sha256="1x0hyna6qgz5w9y7j95wyyrvg7rx8pdpyp9dzmic7q0hycjmg33n"; depends=[KernSmooth]; };
 287  DeMixT = derive2 { name="DeMixT"; version="1.14.0"; sha256="02hkkxkj6fv4jxlq3mj1hxd1zi42pvis8ffcwxf25jk8j19j124c"; depends=[base64enc dendextend DSS ggplot2 KernSmooth knitr matrixcalc matrixStats psych Rcpp rmarkdown SummarizedExperiment sva truncdist]; };
 288  DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.40.0"; sha256="05rwqchfspy8i9fcj9526rl5vvk0rrgr95nvxzdj0sa2136my8y4"; depends=[ggplot2 limSolve pcaMethods]; };
 289  DeepBlueR = derive2 { name="DeepBlueR"; version="1.24.1"; sha256="0aqpn8rqqldkwhzzdpca704z0mi1bzm9f79wvk0ks5pfqk8imnfp"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; };
 290  DeepPINCS = derive2 { name="DeepPINCS"; version="1.6.0"; sha256="1n81lsllbbdkl97dlw7lnpg815siiwk3xsivdfy166dh5jm104yl"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; };
 291  DegNorm = derive2 { name="DegNorm"; version="1.8.2"; sha256="06lr37f5mqk4n5iy2z2qb6ilbcl71izlp92l5j5mfkclgy9nhnmi"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; };
 292  DelayedArray = derive2 { name="DelayedArray"; version="0.24.0"; sha256="0nl1v0mxb759wiia2rsxay0cv0q631gqyzgaa10s175lhzsb8r6p"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Vectors]; };
 293  DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.14.0"; sha256="1r2fgww105433nk2r9sakqszh39l1zhh377wl5q9vnf00iasm2cr"; depends=[BiocGenerics DelayedArray S4Vectors]; };
 294  DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.20.0"; sha256="0qcn7rlq0bsj11sc31wzks2xv900fpmbsblxp9cng5lj5cn2djk3"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; };
 295  DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.6.0"; sha256="15g6agzfcp64dqs0mi0fjggkn8cqi9d116j8i0kjpb9sjh9882i3"; depends=[BH DelayedArray dqrng Rcpp]; };
 296  DelayedTensor = derive2 { name="DelayedTensor"; version="1.4.0"; sha256="1lahwbgwnkiw98ij2vjvf81baas3s35i357392jz3ps8sw7m7vs8"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; };
 297  DepInfeR = derive2 { name="DepInfeR"; version="1.2.0"; sha256="0887lyqq6sc12c9rzida2r56mnbrw313wyysy7g5cf18bcd2xcmx"; depends=[BiocParallel glmnet matrixStats]; };
 298  DepecheR = derive2 { name="DepecheR"; version="1.14.0"; sha256="1j4gxgw1s3a0nm888k02qi1smxqsplc42827ks666md025h9bxcj"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; };
 299  DiffBind = derive2 { name="DiffBind"; version="3.8.4"; sha256="1gil19qk4wc695sl7r789xnqyv748n4jdhaighkjy5hfp9xaaax7"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; };
 300  DiffLogo = derive2 { name="DiffLogo"; version="2.22.0"; sha256="0n6nyw0vb0hvi9awpx6igdgdsfd91fs520aspbxlb33jcd3x0aaz"; depends=[cba]; };
 301  DifferentialRegulation = derive2 { name="DifferentialRegulation"; version="1.2.2"; sha256="17yjmsh2g0rbj2qw97kc63ym0djap0gpnpn2his8r77561zdn8yd"; depends=[BANDITS data_table doParallel doRNG foreach ggplot2 MASS Matrix Rcpp RcppArmadillo SingleCellExperiment SummarizedExperiment]; };
 302  Dino = derive2 { name="Dino"; version="1.4.0"; sha256="1jvhcs24bi0g0hzi3dk6ny6wq8h2950whkqimdqyyglwy7lcbz1f"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; };
 303  Director = derive2 { name="Director"; version="1.24.0"; sha256="0bnvagsqm5cm8l2g18fyavaf7s93hwfi75zmggxiy46xqn7s1718"; depends=[htmltools]; };
 304  DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.40.0"; sha256="009nnl3zwcsg6mh7wl3j856dpi7awkyxdy660rqmiskn7m2ah4l1"; depends=[BiocGenerics IRanges S4Vectors]; };
 305  DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.14.0"; sha256="1fky7w82zx1ynmzfrslsih2639ihhzlj0pa14bwzj1g7xr5p49bi"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; };
 306  DominoEffect = derive2 { name="DominoEffect"; version="1.18.0"; sha256="15k62maqj4kbv2184h5j0j8rkmbcskvmjjn8z26kw296ihifis6w"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; };
 307  Doscheda = derive2 { name="Doscheda"; version="1.20.0"; sha256="0y0lxbjd1kqds3rx77sb4agk8j35xh8k698assrbjjhwg5gjfgid"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; };
 308  DriverNet = derive2 { name="DriverNet"; version="1.38.0"; sha256="0sryp2w0lzalqhk2aizj0lrbxj60illfzg6vzg8isqzv9ic4gnqd"; depends=[]; };
 309  DropletUtils = derive2 { name="DropletUtils"; version="1.18.1"; sha256="0rshaskx9nwd57aliwhk9gc0h6ccrvzbaikyjpbdz1i1zf4fsf77"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; };
 310  DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.40.0"; sha256="13xry8cdcidc7g2hl30pwyi9gg1kx2zw7w504fncmjk9niz5m95w"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; };
 311  Dune = derive2 { name="Dune"; version="1.10.0"; sha256="03kjhck5ypydzz23cp5avah9kpz74i61v9mi89rr7wqdsad3zyif"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; };
 312  DynDoc = derive2 { name="DynDoc"; version="1.76.0"; sha256="0w8x997npnphd91s3nc9f0s4vb94ikszw5mrpf5lfv3n25sqgvhb"; depends=[]; };
 313  EBImage = derive2 { name="EBImage"; version="4.40.0"; sha256="1k6gbivwlai451whq2vr3c0shzs9p4g188jn5waw7973gdzdi00q"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; };
 314  EBSEA = derive2 { name="EBSEA"; version="1.26.0"; sha256="1pfcpawbax3ld4wwn98b13aqrwzdgz8k4x63ncckd2jdanq1l01r"; depends=[DESeq2 EmpiricalBrownsMethod]; };
 315  EBSeq = derive2 { name="EBSeq"; version="1.38.0"; sha256="1gh1cyb76gv2h0knh780648gsbgpn76adfj6x3pjzily5m5bmin0"; depends=[blockmodeling gplots testthat]; };
 316  EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.32.0"; sha256="1k6c2qc7xvv3f094zddjdbjj4hlfxsv04gf5b0zdphmrhbhb8r9m"; depends=[EBSeq]; };
 317  EBarrays = derive2 { name="EBarrays"; version="2.62.0"; sha256="0kg22appd9sd6knm129hchkamzilwr3h8wi4ibrvllbfmx31v9q8"; depends=[Biobase cluster lattice]; };
 318  EBcoexpress = derive2 { name="EBcoexpress"; version="1.42.0"; sha256="0was3sjr5q420inj42bl0ifyd55b2brzbv2nskswskar7myad3yn"; depends=[EBarrays mclust minqa]; };
 319  EDASeq = derive2 { name="EDASeq"; version="2.32.0"; sha256="0hx4als33lvdchz5s6cv2axvjyp0k8p3v0lm51jayhjcjpmihqzp"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; };
 320  EGAD = derive2 { name="EGAD"; version="1.26.0"; sha256="01wxhrfbmhabh8ci95c3drll7g9lc9zpgmlac5b5blp1ar60a2if"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; };
 321  EGSEA = derive2 { name="EGSEA"; version="1.26.0"; sha256="1cjld33vrnlm6l8ssg6x4w7b4ack2xa1lpy924phx64zv44fi3s9"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; };
 322  ELMER = derive2 { name="ELMER"; version="2.22.0"; sha256="1cyyl3596dqs3qyz2ngdlbz8pl8hr5y2gnh5yby8pab4z1sxpr79"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; };
 323  EMDomics = derive2 { name="EMDomics"; version="2.28.0"; sha256="0fz8p3g9cb25v25cmmkwldxijplcm1wn99aa9i7s0zi3i8426vv5"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; };
 324  ENmix = derive2 { name="ENmix"; version="1.34.02"; sha256="0rn541xfsxfdyzy3dn727bwrfpkgp12282lax7xg1j8584mk4pcf"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; };
 325  ERSSA = derive2 { name="ERSSA"; version="1.16.0"; sha256="03ns14cbi1c9jcmxf4fhv5f7r7hvql33wz9n9ddcrn43xki8r6vw"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; };
 326  EWCE = derive2 { name="EWCE"; version="1.6.0"; sha256="1d2sw63i5jy1fa1q3cwdvd05xd8bb0k66zjdvpgsds9m7mvw75vb"; depends=[BiocParallel data_table DelayedArray dplyr ewceData ggplot2 HGNChelper limma Matrix orthogene reshape2 RNOmni SingleCellExperiment stringr SummarizedExperiment]; };
 327  EasyCellType = derive2 { name="EasyCellType"; version="1.0.0"; sha256="1xry2kgb7ha2hg82jap88px9xxcq609il85xi0k0gilla1swvjc1"; depends=[AnnotationDbi clusterProfiler dplyr forcats ggplot2 magrittr org_Hs_eg_db org_Mm_eg_db rlang]; };
 328  EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.26.0"; sha256="1vws49a204xkwixdvp5l62in7vxbpf4qsfcnm34zkc4kx5hval9j"; depends=[]; };
 329  EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.16.0"; sha256="1nbg2r097rz24ybzh9ww6myd6kc2rz02vbg6g0rb3dlng0002xsm"; depends=[ggplot2 ggrepel]; };
 330  EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.28.1"; sha256="0ikvs91qfswnyc2p6pn5b0n7rz0szx65pv0ywgzr94arm85gwirc"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; };
 331  EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.28.2"; sha256="03z0ya3qsg4drsjiqb5akbjivbsmqjv8r52y8nhrc5kqa04zffxk"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; };
 332  EpiCompare = derive2 { name="EpiCompare"; version="1.2.0"; sha256="0h0ap1xa0g57zh4djr263d97firklsvb6nwq0dk1h39j8wyp5j54"; depends=[AnnotationHub BiocGenerics BRGenomics ChIPseeker data_table genomation GenomeInfoDb GenomicRanges ggplot2 htmltools IRanges plotly reshape2 rmarkdown rtracklayer stringr]; };
 333  EpiDISH = derive2 { name="EpiDISH"; version="2.14.1"; sha256="02pf0y8sj1j48qfmfjckr4vx9rz3aypb6iydlpfvhcm829jr51cl"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; };
 334  EpiMix = derive2 { name="EpiMix"; version="1.0.1"; sha256="1rn6hpxxiw8n7im2dnb2x19ahvahljxac6853qkwxb7a8gwvwlad"; depends=[AnnotationDbi AnnotationHub Biobase biomaRt data_table doParallel doSNOW downloader dplyr ELMER_data EpiMix_data ExperimentHub foreach GenomeInfoDb GenomicFeatures GenomicRanges GEOquery ggplot2 impute IRanges limma plyr progress R_matlab RColorBrewer RCurl rlang RPMM S4Vectors SummarizedExperiment tibble tidyr]; };
 335  EpiTxDb = derive2 { name="EpiTxDb"; version="1.10.0"; sha256="152snn75nixdas9n3g80f32hmdrqdyv71cl8fkax5jl4mqrp6px5"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; };
 336  EventPointer = derive2 { name="EventPointer"; version="3.6.0"; sha256="0z9bcqfwi8mym1pwywmvdmiszw0whpz4svh7jgwjvza94z5w5ly5"; depends=[abind affxparser Biostrings BSgenome cobs doParallel fgsea foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq stringr SummarizedExperiment tximport]; };
 337  ExCluster = derive2 { name="ExCluster"; version="1.16.0"; sha256="0m635as5xigkjqlmwh32afbbxffjf6ahrr83gr8z886z365h4m81"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; };
 338  ExiMiR = derive2 { name="ExiMiR"; version="2.40.0"; sha256="02aw2kjpg2xfmx0xjphsalw81gixwd2yrw73rcbcxyz7fpq98c5h"; depends=[affy affyio Biobase limma preprocessCore]; };
 339  ExperimentHub = derive2 { name="ExperimentHub"; version="2.6.0"; sha256="1j71zmxwiz82gg6kii2bmynzwll1r6fmsq972kmvxvm6crpvi15s"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; };
 340  ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.24.0"; sha256="0jkbp0pc6zjjwmklrd23grxrk200rw1wbd78w3qcicgzfnz90gar"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; };
 341  ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.8.0"; sha256="1jfzxca82cyd4hh4jk9nmwjwq608i8zs2nfjiclkpk0hh0bf6j22"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; };
 342  ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.10.0"; sha256="18dbcalpk4m8ziqksgp6kxd4gm8ip0l5sydnqfd7mjzymhvxsbv9"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; };
 343  ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.26.0"; sha256="0z9x1j9wrqqzqdg8c1vy20lgd9dfq9z74af813nkag8qph2nhnm9"; depends=[Biobase BiocStyle httr jsonlite limma RCurl S4Vectors SummarizedExperiment XML xml2]; };
 344  FCBF = derive2 { name="FCBF"; version="2.6.0"; sha256="124c25x18xkhyrizfzchj4xkg5hwdw3935gyibbvgxj6b3l1ph97"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; };
 345  FEAST = derive2 { name="FEAST"; version="1.6.0"; sha256="1yk2k0n6nafzh594rydnnpwmznv64iqan9p7137n72vpbcav9ql4"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; };
 346  FELLA = derive2 { name="FELLA"; version="1.18.0"; sha256="09rl9zna99rydqk8vfdlmfx0g4cg0zaw27r153ll7hpcnnkx18z1"; depends=[igraph KEGGREST Matrix plyr]; };
 347  FGNet = derive2 { name="FGNet"; version="3.32.0"; sha256="1jg7qiq7fdlw2fg362sjhalrdbvqxxrzb0q7l6ih4vq6qxjlyyyz"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; };
 348  FISHalyseR = derive2 { name="FISHalyseR"; version="1.32.0"; sha256="18sj688bm80zldj6d6w1ic66pk2qzp7liwp9vjmh8a80i6xxlnkm"; depends=[abind EBImage]; };
 349  FLAMES = derive2 { name="FLAMES"; version="1.4.3"; sha256="01djq2gjaq8rhxdfalzpnwfbfyrcbyqykdbyb3mm0vmzalv3z5kr"; depends=[bambu basilisk BiocGenerics Biostrings circlize ComplexHeatmap cowplot dplyr DropletUtils GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gridExtra igraph jsonlite magrittr Matrix MultiAssayExperiment RColorBrewer Rcpp reticulate Rhtslib Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment stringr SummarizedExperiment tidyr withr zlibbioc]; };
 350  FRASER = derive2 { name="FRASER"; version="1.10.2"; sha256="17j9dfbdlycwdr2lnil507i5i4hdg7q6dv2mizgkzj6295k2h0dp"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; };
 351  FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.34.0"; sha256="0xnrrrhxdgcn6033kj1v780s7m58j2krc8hj1y554ddilf90jwy5"; depends=[fda MASS]; };
 352  FScanR = derive2 { name="FScanR"; version="1.8.0"; sha256="1i0w5ai5si9a4m3s96grm75wwdx5g2ah4vg0q95sgjj68gx4ln2c"; depends=[]; };
 353  FamAgg = derive2 { name="FamAgg"; version="1.26.0"; sha256="17avlg6x7kan3lq5ffvzq7lmrscnm0h5vj29hhspf6zn8gwpi86f"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; };
 354  FastqCleaner = derive2 { name="FastqCleaner"; version="1.16.1"; sha256="1xy4b1ppm9jlrxzzr18f0vcj91wpai328c1l49jkrz3cc6s0hap2"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; };
 355  FilterFFPE = derive2 { name="FilterFFPE"; version="1.8.0"; sha256="0i7737mzg557yg23h730pvxz1gx37blbh7krla4p4nqmic2qdrcy"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; };
 356  FindIT2 = derive2 { name="FindIT2"; version="1.4.0"; sha256="0cid8lvh5zck421ajfca320n4lxr7jafmipgcvk86zd89izz72pa"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; };
 357  FitHiC = derive2 { name="FitHiC"; version="1.24.0"; sha256="1c7jscl82knbh5ha1i1hlm46nnhz6aw5h0j5xnl4hlgx8mnn05fl"; depends=[data_table fdrtool Rcpp]; };
 358  FlowSOM = derive2 { name="FlowSOM"; version="2.6.0"; sha256="1s7xilhhc55igq0zmvpfzhnh5df8bzmm3daknz75xhzhhg5b7z1c"; depends=[BiocGenerics colorRamps ConsensusClusterPlus dplyr flowCore ggforce ggnewscale ggplot2 ggpubr igraph magrittr rlang Rtsne tidyr XML]; };
 359  FoldGO = derive2 { name="FoldGO"; version="1.16.0"; sha256="1b4h4gggxfv12lvxsjk1c8rn9rrlcl63p8p61i7wfbh3nkzx62r0"; depends=[ggplot2 tidyr topGO]; };
 360  FunChIP = derive2 { name="FunChIP"; version="1.24.0"; sha256="1wjbjmppizpgdxlkq19wa5v1yvkgh6cal2cqiby90267djq9m8y5"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; };
 361  FuseSOM = derive2 { name="FuseSOM"; version="1.0.1"; sha256="0wx7f7y81sr0qmz8sza1rpg3v8d9z6rc2z6df83ws1rwsaz5zn0f"; depends=[analogue cluster coop diptest fastcluster FCPS fpc ggplot2 ggplotify ggpubr pheatmap proxy psych Rcpp S4Vectors stringr SummarizedExperiment]; };
 362  GA4GHclient = derive2 { name="GA4GHclient"; version="1.22.0"; sha256="09kfjrsbz6sk3g304kqk0zy39v10sb758alyvajvjj7pfkdv67ak"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; };
 363  GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.20.0"; sha256="0zal12pb48hwam9zan1a865i5njrvzg9dc7mpd9jiffp7q9rrwi9"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; };
 364  GARS = derive2 { name="GARS"; version="1.18.0"; sha256="12mfqv9ag1rrig8wcpl5zwvb68j7g1cdrw5ynlkbrgxcwnibpmnq"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; };
 365  GAprediction = derive2 { name="GAprediction"; version="1.24.0"; sha256="0x2mkm6fq7772fql2whjp1xcf5pqi06ywzj8prb51yz8s8zqvzl2"; depends=[glmnet Matrix]; };
 366  GBScleanR = derive2 { name="GBScleanR"; version="1.2.9"; sha256="15gb2j5ha2b8566bldr090n9vbzy55abym1ax8cb0if0f3xj16rj"; depends=[expm gdsfmt ggplot2 Rcpp RcppParallel SeqArray tidyr]; };
 367  GCSscore = derive2 { name="GCSscore"; version="1.12.0"; sha256="11d8ygc8lfyzz7vmwvi6yy3lf6pd8fsichg6ki0lkp459nivbdi8"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; };
 368  GDCRNATools = derive2 { name="GDCRNATools"; version="1.18.0"; sha256="0f2nqdcygpmcwjngadqxri3y87ylrg0f67ihg7gwd4afqsbckd62"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; };
 369  GDSArray = derive2 { name="GDSArray"; version="1.18.0"; sha256="1knaqi5pslqkkx7fd93vmkwcxii7rbyj13s89iy54snlw29lbchj"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; };
 370  GEM = derive2 { name="GEM"; version="1.24.0"; sha256="0lbs7igiq8v0y66pbr0jvxcadp7ni47mjynag7m352k87633nann"; depends=[ggplot2]; };
 371  GENESIS = derive2 { name="GENESIS"; version="2.28.0"; sha256="0lca67dxnwpignglimc67hpyhjg6ybwqz9sqhg4yqg6m05ym15fa"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; };
 372  GENIE3 = derive2 { name="GENIE3"; version="1.20.0"; sha256="096crx7n75x60s9sx3l7nld3yvrsqs0clvjsdarxc6bbn2qxk81i"; depends=[dplyr reshape2]; };
 373  GEOexplorer = derive2 { name="GEOexplorer"; version="1.4.0"; sha256="1gjb0xsfg745sckzwz0v4g1jh6ikwkbvb5k9cw15g3cnqc5xlqjl"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; };
 374  GEOfastq = derive2 { name="GEOfastq"; version="1.6.0"; sha256="1k62g3k60rzddg6k7f88pkb19ip6zshm2ymi1gz10kf9xrfj0d97"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; };
 375  GEOmetadb = derive2 { name="GEOmetadb"; version="1.60.0"; sha256="09xfacrfdnnm43pi0a96zmw1awqgffq1izdyzpnjd23ks4hjw9hk"; depends=[GEOquery RSQLite]; };
 376  GEOquery = derive2 { name="GEOquery"; version="2.66.0"; sha256="0ck2aml1kxdahwcszi3j7hcikwi8fdnzphlrsn3h2q4dkk5x00kn"; depends=[Biobase curl data_table dplyr limma magrittr R_utils readr tidyr xml2]; };
 377  GEOsubmission = derive2 { name="GEOsubmission"; version="1.50.0"; sha256="1vqdh9nbib40xcwc2j239ijjdrlgyx20qb5ji99639v6ibia02wm"; depends=[affy Biobase]; };
 378  GEWIST = derive2 { name="GEWIST"; version="1.42.0"; sha256="1hkqv11apwhvg89ky792m6y0aml6hmxbqkk622r4zr1snkc6ggxw"; depends=[car]; };
 379  GGPA = derive2 { name="GGPA"; version="1.10.2"; sha256="1hxvrxd0bmffbqw70pxnjqrz3512c3mygsnf66s8cgjpmcrwcqc0"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; };
 380  GIGSEA = derive2 { name="GIGSEA"; version="1.16.0"; sha256="1gf4zzxcbh4g54div9ckjcx6yha74ilzqbmjzifjg1ybixy9d2mw"; depends=[locfdr MASS Matrix]; };
 381  GISPA = derive2 { name="GISPA"; version="1.22.0"; sha256="0j448iqr71hqbfv9r9f4rccy4phfhcgy7w8kij0idw2mjpvkpyvr"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; };
 382  GLAD = derive2 { name="GLAD"; version="2.62.0"; sha256="0gb52ic5r6nkgm2ynm174vcvbmkbhhjgv71lsmxpxzcsb6rr7qj6"; depends=[aws]; };
 383  GMRP = derive2 { name="GMRP"; version="1.26.0"; sha256="1q79q958wpfrl6q4g1yl6kxcw38817rpbdnjl4k4xzk3hf5jmd7h"; depends=[diagram GenomicRanges plotrix]; };
 384  GNET2 = derive2 { name="GNET2"; version="1.14.0"; sha256="0vhdn8nrp9fj2g1qdng0zdw5crmzcck3rwvvzcswh2p9pwg1cfzb"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; };
 385  GOSemSim = derive2 { name="GOSemSim"; version="2.24.0"; sha256="14wc7qgk1psknld05246cn0nqxpbjprax7j75h5yyd0w7hjyly2s"; depends=[AnnotationDbi GO_db Rcpp]; };
 386  GOSim = derive2 { name="GOSim"; version="1.36.0"; sha256="0hxy1x1mkygd0r7n38plpb3wj443kak413ml813zzmhvrs39zvnf"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; };
 387  GOTHiC = derive2 { name="GOTHiC"; version="1.34.0"; sha256="117vbz1yasav1p92x2wylmsc9kc5z0qv4jsvd1nf9b2ndxcrgxd5"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; };
 388  GOexpress = derive2 { name="GOexpress"; version="1.32.0"; sha256="1wccyfy8wkgns12r2mh7w6zfwjqiqhv1riyk0s4ivax2vyqmhb65"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; };
 389  GOfuncR = derive2 { name="GOfuncR"; version="1.18.0"; sha256="0d0xis4nns5icsr16w4ik2d95n3p2h93c47jvlp22crv7f4rlaa5"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; };
 390  GOpro = derive2 { name="GOpro"; version="1.24.0"; sha256="04kr02whakm65gqy1h4vxl9m6s9zl6hgwd3dfdk8106npyrjqlsb"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; };
 391  GOstats = derive2 { name="GOstats"; version="2.64.0"; sha256="07chyfkq8nwxjgnlrrwza8jw996dq0ki4bzdfalj9yl1iac1pnys"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; };
 392  GOsummaries = derive2 { name="GOsummaries"; version="2.34.0"; sha256="1fgalk4gs1vajax7zngq9caqdw0r9ryjz0vydjr4n21ypjbc9476"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; };
 393  GPA = derive2 { name="GPA"; version="1.10.0"; sha256="0gd7ln4xiagibzdzhfqy8m7v35yp6vm07xhbp7ky5ipq1j2nzpcc"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; };
 394  GRENITS = derive2 { name="GRENITS"; version="1.50.2"; sha256="16ryqvn2dw9c9cz5rnykv2k7rf5zm1v6llvcszzm7qj5mqzqx6jp"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; };
 395  GRaNIE = derive2 { name="GRaNIE"; version="1.2.6"; sha256="1j85520njf89bliw08lxq59h65493v8r58fz797a79i27qgfcwi1"; depends=[biomaRt Biostrings checkmate circlize colorspace ComplexHeatmap data_table DESeq2 dplyr forcats futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph limma magrittr Matrix matrixStats patchwork progress RColorBrewer readr reshape2 rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect topGO viridis]; };
 396  GRmetrics = derive2 { name="GRmetrics"; version="1.24.0"; sha256="08jjmlr1xiilfji6c42bcaf22vjvizhj1vgxxxzmda349cxyc1fv"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; };
 397  GRridge = derive2 { name="GRridge"; version="1.22.0"; sha256="0vmwm50dwk3im3qx40vh9ipmfqywzz5fmmm79b74zjcd3qjrznf3"; depends=[glmnet graph Iso mvtnorm penalized survival]; };
 398  GSALightning = derive2 { name="GSALightning"; version="1.26.0"; sha256="08zkd2vganx424g8kkp2ny9dzpggcvj53avsjk7gx2fr1l8zxhmd"; depends=[data_table Matrix]; };
 399  GSAR = derive2 { name="GSAR"; version="1.32.1"; sha256="0429kdwkknc5l7wq5akfy81qic3yrymchpbm7nbyzchrr6rhjs5b"; depends=[igraph]; };
 400  GSCA = derive2 { name="GSCA"; version="2.28.0"; sha256="0svf5cz8dq6ghv6qvpzrhziks9nchkg3izw3ivqnqgc9b7h54cds"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; };
 401  GSEABase = derive2 { name="GSEABase"; version="1.60.0"; sha256="0i8fliln3v9sw9x34pqafdx1z6jkys8b11fkz4ihmw8lc8lfd0x5"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; };
 402  GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.18.0"; sha256="11j46g9knb7da3xh5fq68w3d3z2h73w08dc7ml35a3336f52604w"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; };
 403  GSEAlm = derive2 { name="GSEAlm"; version="1.58.0"; sha256="0xzywh8824xiggwgw88x2x83z75wwrajiv7qk7hgp1zw2mg2k15y"; depends=[Biobase]; };
 404  GSEAmining = derive2 { name="GSEAmining"; version="1.8.0"; sha256="0dlj9s2070bms5ih896sffniygcnwbvbq6wphiwsljgcs4fb94sf"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; };
 405  GSRI = derive2 { name="GSRI"; version="2.46.0"; sha256="13nhiz25h66c8ql2mcdx9zvlvqyxvhvy2xcsh2z42jggrnbq026p"; depends=[Biobase fdrtool genefilter GSEABase les]; };
 406  GSReg = derive2 { name="GSReg"; version="1.32.0"; sha256="0zz1xlf3n0bwlvpn8r8bi5q54rjaj2clnzg773ksnc59nw1bkxzq"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; };
 407  GSVA = derive2 { name="GSVA"; version="1.46.0"; sha256="1vpnxcjd9npbmqpffdr6gl89b17jcjykkr725z9144xkaqclbw65"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; };
 408  GSgalgoR = derive2 { name="GSgalgoR"; version="1.8.0"; sha256="176qh1cfmy1cv3773fhy5x0g7qx9rnawmkk7n77mikbp45c8yvi9"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; };
 409  GUIDEseq = derive2 { name="GUIDEseq"; version="1.28.0"; sha256="0bvns0sqwmqybfjcy9cbdwm3gglf7fisllxmvqxk9ky270jc31zg"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 hash IRanges limma matrixStats multtest openxlsx patchwork purrr rio rlang Rsamtools S4Vectors stringr tidyr]; };
 410  GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.8.0"; sha256="1h481k2sz3mbj5wq8xfi78gc97p2370yadj37pb0hw1mi460xx4c"; depends=[caret doParallel GA ggplot2 Matrix memoise Rcpp RcppEigen reshape2]; };
 411  GWASTools = derive2 { name="GWASTools"; version="1.44.0"; sha256="02fi0vqk554l3akh841lam4wfknzi31rpbgj560vjfgpwvhz5r9q"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; };
 412  GWENA = derive2 { name="GWENA"; version="1.8.0"; sha256="1w27nwgs6087a5s0vh70365ikv60ahp3jvhridsqy9n038wp2yhq"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; };
 413  GateFinder = derive2 { name="GateFinder"; version="1.18.0"; sha256="1s37haxmdh84fxqjvvb3dvaha8ds2khhnfk8z7jpsx1arzzlm9r0"; depends=[diptest flowCore flowFP mvoutlier splancs]; };
 414  GenProSeq = derive2 { name="GenProSeq"; version="1.2.0"; sha256="1fmmyb2lhnnvr8s9l8pljrkpzlzhbchy0sv6q72lgqbnxr5p2a5f"; depends=[CatEncoders DeepPINCS keras mclust reticulate tensorflow ttgsea word2vec]; };
 415  GenVisR = derive2 { name="GenVisR"; version="1.30.0"; sha256="0vdcxf7haz0fack0fv6jd3lrbaqkla6ymlsx6158cwl767q8ms4c"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; };
 416  GeneAccord = derive2 { name="GeneAccord"; version="1.15.0"; sha256="1dlnqdcrl1fv5yf0zwfgkqfd2x19fv6q84p7c730nmnnaqal6md1"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; };
 417  GeneBreak = derive2 { name="GeneBreak"; version="1.28.0"; sha256="1rq7zw6d6i4qrich9g00pshily56y704q6llwgb39609m1h9828c"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; };
 418  GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.44.0"; sha256="16cgfw2fdggkzklb13qf7mravbjymg6yazl7q6iqdrkwlhpxl0f7"; depends=[Biobase]; };
 419  GeneGA = derive2 { name="GeneGA"; version="1.48.0"; sha256="136z3sxjps1k63ivr0cmqg7xkvbzf7j69vwkfbc1n00yfapiprm2"; depends=[hash seqinr]; };
 420  GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.24.0"; sha256="1j8jkg5cfkizd62rqmagwnmbi5f3c9bix7q5si115wxnc1nfc8cd"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; };
 421  GeneMeta = derive2 { name="GeneMeta"; version="1.70.0"; sha256="1ggjnbsmjnprdmbpcb0ghqaydr95d7vf9q27z0kg1mb6djd92n26"; depends=[Biobase genefilter]; };
 422  GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.40.0"; sha256="023ibp69gb322csc8g7yz2l1khhsh20zdqxf1apcv0mr5ils6nga"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; };
 423  GeneOverlap = derive2 { name="GeneOverlap"; version="1.34.0"; sha256="0ii3ymysqkhyvj204zigpgjny0cglggqmvw311gvgkdi16dib1qs"; depends=[gplots RColorBrewer]; };
 424  GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.54.0"; sha256="1q7fgxgak5fahmxy17ys3g3k1mqihinyhnm0f7dfvydmd25cfx84"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; };
 425  GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.42.3"; sha256="1r7q329v06yb36hcm89zcgv1skd9nk4g6yk8ngpl038i3hbh5yi8"; depends=[Biobase limma MASS]; };
 426  GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.18.0"; sha256="0kn3qgdzi6wdr6r34s646j082lv11hng71l8waqiip2xn7xqnjww"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; };
 427  GeneTonic = derive2 { name="GeneTonic"; version="2.2.0"; sha256="113h6s9xak7qpc6wgkr33sqr7s62xnx78ciz0jhhw4ya5vbh90pj"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap ComplexUpset dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; };
 428  GeneticsPed = derive2 { name="GeneticsPed"; version="1.60.3"; sha256="1j9p6gi0i34zwrgqbxiywc2ni6n7nm7jwi5wjzpdsz7ziq6p8fxp"; depends=[gdata genetics MASS]; };
 429  GenomAutomorphism = derive2 { name="GenomAutomorphism"; version="1.0.3"; sha256="1qz577a952srxa3mqnnlv4allha5yaqz4b7c4lai6v9i3zm1z52q"; depends=[BiocGenerics BiocParallel Biostrings data_table doParallel dplyr foreach GenomeInfoDb GenomicRanges IRanges numbers S4Vectors]; };
 430  GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.34.9"; sha256="0mn9ddm2xwc2b7zg0n9a056jcr61jv6v8jacxm3q8qmz6r30kfrb"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; };
 431  GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.34.1"; sha256="1c784ic85v64gflwwk22dh3f0m60q3z6y23d9jy3w8ydhda6gw0s"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
 432  GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.22.1"; sha256="1kl2g0x0831sviigpl2ch9hqii8sl0babyyfbfzll1dnxr1d9w4a"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang tibble xml2]; };
 433  GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.6.0"; sha256="0kknl7ras2wir8775m0spl8dya6pf68l1br14wzjrxxwsdlbfx7c"; depends=[Biostrings broom data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2 scales]; };
 434  GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.50.4"; sha256="1qsr433nh225pk5ngsrjrf2rfv7ynq4c8qsjfjr7khy2z9czlg6n"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; };
 435  GenomicFiles = derive2 { name="GenomicFiles"; version="1.34.0"; sha256="0k64m9f5y88p90wd87hy0ixj5ly5yi413al9p2bn10b1fjx2c451"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; };
 436  GenomicInteractionNodes = derive2 { name="GenomicInteractionNodes"; version="1.2.0"; sha256="12mrnc2wpsj87qkff5kxz58058wzvr8s94pc98lvf8csha6sf6rc"; depends=[AnnotationDbi GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges RBGL S4Vectors]; };
 437  GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.32.0"; sha256="0l14hz5pr0wlin46y8ycpvk5hp2ld9ajx11y85rw5hlwv50byfbb"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; };
 438  GenomicOZone = derive2 { name="GenomicOZone"; version="1.12.0"; sha256="0jq8llksadhls1174g22kjr0k5vdsz99k9h2ypwfji2j05c4843a"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; };
 439  GenomicRanges = derive2 { name="GenomicRanges"; version="1.50.2"; sha256="13b6bm6nrxx1vgzrzpf59c2lq5w8kjq9hsch5h037f0p9w3w5z9p"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; };
 440  GenomicScores = derive2 { name="GenomicScores"; version="2.10.0"; sha256="1sz0gmwc5iam83pxnc702pd5h6nsa46kb0wsqs8ysb1ximbkfh5h"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array httr IRanges rhdf5 S4Vectors XML]; };
 441  GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.6.0"; sha256="0mzwn9fchaxkpd4f85bj63gnwnrxba47slrcxmgv7a39b1yjh46y"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr irlba plotly S4Vectors SummarizedExperiment]; };
 442  GenomicTuples = derive2 { name="GenomicTuples"; version="1.32.0"; sha256="1wahzm5vk1l5gcj8y8ngkp9w1yzk0b5hsvx53mpcis08np9x64bk"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; };
 443  GeoDiff = derive2 { name="GeoDiff"; version="1.4.2"; sha256="06dcy4ifvg2y4cbgbnxh5i3ap8b75cmxhrrz3qwr6crwlqxdr4w1"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; };
 444  GeomxTools = derive2 { name="GeomxTools"; version="3.2.0"; sha256="1rhld2s6ixq8djnqpmxjbibkrksxgvn4giyrqm8pmmkqy3awczs6"; depends=[Biobase BiocGenerics data_table dplyr EnvStats GGally ggplot2 lmerTest NanoStringNCTools readxl reshape2 rjson rlang S4Vectors SeuratObject stringr]; };
 445  GladiaTOX = derive2 { name="GladiaTOX"; version="1.14.0"; sha256="02svr9mnqzp3gy8gd5b5d53mc0gdw8vkdzyhxarq52bp711q8g03"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; };
 446  Glimma = derive2 { name="Glimma"; version="2.8.0"; sha256="1fskabpd3xlrbhqvzam9ibpxmbdys7y1b265np8hz4k704ww1g22"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; };
 447  GlobalAncova = derive2 { name="GlobalAncova"; version="4.16.0"; sha256="0z3c9kcd17chsnypl5kbrdaz1pdlaq687aq9y9yqasqp8bb8lqwv"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; };
 448  GmicR = derive2 { name="GmicR"; version="1.12.0"; sha256="08a296vyl3bcrak3bpgb7il1r8w1mf7hwhc1qvrxfjlj7w1v1yfm"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; };
 449  GraphAT = derive2 { name="GraphAT"; version="1.70.0"; sha256="1y4fbxvcrb6gndz69g17ya1ad11anbxbiymdvxp9rs363kg563ll"; depends=[graph MCMCpack]; };
 450  GraphAlignment = derive2 { name="GraphAlignment"; version="1.62.0"; sha256="004ivwdz8xdpvdakc9i32skh9f7rj8d5mf3r1ap2n1al53ymbjlj"; depends=[]; };
 451  GraphPAC = derive2 { name="GraphPAC"; version="1.40.0"; sha256="08kpnqpmicm3jydnx4p9yxmqf7rj4br8jsi6zv04qq4f3mz1l1ii"; depends=[igraph iPAC RMallow TSP]; };
 452  GreyListChIP = derive2 { name="GreyListChIP"; version="1.30.0"; sha256="02qzvs8fmh79g4cc5j2gxj1wazpmly7vjr527qlsgi3jmc3swxgz"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; };
 453  Guitar = derive2 { name="Guitar"; version="2.14.0"; sha256="0lrw1v82amr54bkfh98953b16fhlgd1i6kz1g7zy8gj0hd417ms1"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; };
 454  Gviz = derive2 { name="Gviz"; version="1.42.1"; sha256="01qs60sdh7c8cxkv3qbfcfwpjhab88j872va50fi95xsqnmj5isa"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; };
 455  HDF5Array = derive2 { name="HDF5Array"; version="1.26.0"; sha256="1y25mlsqf2inij6w2825xxl30bdba971az6rjf7j9bnya3gpvi6h"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; };
 456  HDTD = derive2 { name="HDTD"; version="1.32.2"; sha256="1kavnjajd9a3qgzfgxrmk0jbl7hxdbz3cpwm386nk2ny5rg657v4"; depends=[Rcpp RcppArmadillo]; };
 457  HELP = derive2 { name="HELP"; version="1.56.0"; sha256="1j5wa3w32rsj4pzvx4dyg43m2kqmnxxyrd2gaplnq9riwgmqgs0j"; depends=[Biobase]; };
 458  HEM = derive2 { name="HEM"; version="1.70.0"; sha256="03m1ciknphvh6vf0jl2n53jjqdggjaakvfpyx6ba0zspa88pw2lk"; depends=[Biobase]; };
 459  HGC = derive2 { name="HGC"; version="1.6.0"; sha256="0lxjfzwcmksfrfgs49ad7idv93z7y7g35vir2sxacnmprs451nar"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; };
 460  HIBAG = derive2 { name="HIBAG"; version="1.34.1"; sha256="1nzq896qzcggm1ah7nkrbzp3dmb3mrz2pslw3xj6c60a9bbsi6kx"; depends=[RcppParallel]; };
 461  HIPPO = derive2 { name="HIPPO"; version="1.10.0"; sha256="136wsy70p87yva1ipdxg27gsz9mran9q9050frrx91d0fl1q7d94"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; };
 462  HIREewas = derive2 { name="HIREewas"; version="1.16.0"; sha256="1mrymcipll2rj8xkh0h7ggvkazdlrhw16px6kc4xfwkr65vs4p7g"; depends=[gplots quadprog]; };
 463  HMMcopy = derive2 { name="HMMcopy"; version="1.40.0"; sha256="0p1jn2lyvwy9kx83kmpxjma0fcar8gngp3hmv35qc2qa0ns6ji5v"; depends=[data_table]; };
 464  HPAStainR = derive2 { name="HPAStainR"; version="1.8.0"; sha256="0h2i5aihrwhka4qq5xka1l1k5kwx1sn2j0xccgiwkm27743y1l68"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; };
 465  HPAanalyze = derive2 { name="HPAanalyze"; version="1.16.0"; sha256="0kfmlsar5a8ypq412fzm473phadqy9s1icn1idwbk9hrv6a9h0ch"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; };
 466  HPiP = derive2 { name="HPiP"; version="1.4.0"; sha256="0rpfkkicc1bhzwxfkh29wz154vn651aydjvri9m8py0fw5lwjc21"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr MCL pROC protr PRROC purrr readr stringr tibble tidyr]; };
 467  HTSFilter = derive2 { name="HTSFilter"; version="1.38.0"; sha256="15fxsdh2zaz42i3zrpk8yrvgwg8f1jk8f184wjdrkw3jlxh46k55"; depends=[Biobase BiocParallel DESeq2 edgeR]; };
 468  HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.28.1"; sha256="08lychyrjmdc4vqyd8djzvhqhwiykskbbzjjb7nf4fw87x2485gm"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; };
 469  HTqPCR = derive2 { name="HTqPCR"; version="1.52.0"; sha256="1kclvh8f2sf534cjw07ry9nx74n6p7r0vmc3mk2nr37yvpf26b3q"; depends=[affy Biobase gplots limma RColorBrewer]; };
 470  Harman = derive2 { name="Harman"; version="1.26.0"; sha256="1gfdmcjgr3vnafyddcg8kvw0ls7303r2z7ql2lls31x4cz9las3w"; depends=[Ckmeans_1d_dp matrixStats Rcpp]; };
 471  Harshlight = derive2 { name="Harshlight"; version="1.70.0"; sha256="0asjgcnwawg8x7ql0srhb2011rvb4kr2cpsa1cy28nfmjfvdf0qm"; depends=[affy altcdfenvs Biobase]; };
 472  Heatplus = derive2 { name="Heatplus"; version="3.6.0"; sha256="0zbjw9f616dz1fpp6q6whbmlrf2gypq8pp9i66c376cs2aifp1si"; depends=[RColorBrewer]; };
 473  HelloRanges = derive2 { name="HelloRanges"; version="1.24.0"; sha256="049841bzm0mbj3vhy70yp1r4kc95lqn1yz52ld24b9m2svwzwzhc"; depends=[BiocGenerics BiocIO Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; };
 474  Herper = derive2 { name="Herper"; version="1.8.1"; sha256="18jmxkw6j7y10958q48phs5hanw3aqdnjx64r9qymg8jbf4z5gnr"; depends=[reticulate rjson withr]; };
 475  HiCBricks = derive2 { name="HiCBricks"; version="1.16.0"; sha256="03m80snh7k7gmkjj19rxgch2bhwlwiibrpg3wc2gyqiv0007c6nl"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; };
 476  HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.6.0"; sha256="0kq6p1v4d29f9x1b1bfad4gqmi61cjv8h10lzlfkybiqvqgv717d"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; };
 477  HiCDOC = derive2 { name="HiCDOC"; version="1.0.0"; sha256="06814r4nmznixr9iq7kkfr5cj8wpgyfykscz454pvz3fzflfxvr1"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicRanges ggExtra ggplot2 ggpubr gridExtra gtools InteractionSet multiHiCcompare pbapply Rcpp rhdf5 S4Vectors SummarizedExperiment zlibbioc]; };
 478  HiCcompare = derive2 { name="HiCcompare"; version="1.20.0"; sha256="0hvv3bp0fk03bg7ndnr7j4p1a56xavbpl84941fngc45xybdqjmf"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; };
 479  HiContacts = derive2 { name="HiContacts"; version="1.0.0"; sha256="1sbvlfldfbill61vih6ankmqz63r9ym6p3l3j7fy8pl4q1bwv5xf"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicInteractions GenomicRanges ggplot2 ggrastr glue HiContactsData InteractionSet IRanges Matrix reticulate rhdf5 S4Vectors scales stringr tibble tidyr vroom]; };
 480  HiLDA = derive2 { name="HiLDA"; version="1.12.0"; sha256="0jlx7x06lrxh86sbkcnyabbv1g1jyf06dwj0wmlx9q1q7n0wn08d"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; };
 481  HiTC = derive2 { name="HiTC"; version="1.42.0"; sha256="10m3pq22a8m8bbfkmq5r44ydg2668g6dxmxp7km47jxgf9hlqhcl"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; };
 482  HilbertCurve = derive2 { name="HilbertCurve"; version="1.28.0"; sha256="09l6lllp0sqb1m7fgdxmq05ng4qr6817l360s7ly6cigkaylq6s1"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; };
 483  HilbertVis = derive2 { name="HilbertVis"; version="1.56.0"; sha256="15xql3rq1g2p0ih1ahjv2y9rwfrzrhj9f4sp7qrrhha9izas4v6d"; depends=[lattice]; };
 484  HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.56.0"; sha256="1x4clsjdg95wn4n65jyh1fyhnamma1897mq9jg16akvg7d48q60m"; depends=[HilbertVis]; };
 485  HubPub = derive2 { name="HubPub"; version="1.6.0"; sha256="014alfgyrqk8l74jsnz9lkjfiracrrdg7xv757qawvkwzl4phs89"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; };
 486  HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.14.0"; sha256="1jlq5np9sxdznxmbqjxlasx8ksy2lzhx98sf6svkxjw9p5qxpxlk"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; };
 487  HybridMTest = derive2 { name="HybridMTest"; version="1.42.0"; sha256="0mv092lq8548l306ghgvh8yka1fnyvs7w1yzfjzcchj8vlsb0qns"; depends=[Biobase fdrtool MASS survival]; };
 488  IHW = derive2 { name="IHW"; version="1.26.0"; sha256="04vbf42bzqydf5mi4mqmcyh0xdx4phs4cjhsm6fimhmjhxm8jyry"; depends=[BiocGenerics fdrtool lpsymphony slam]; };
 489  ILoReg = derive2 { name="ILoReg"; version="1.8.0"; sha256="1zqlj87p641xi77vgdskxyspg2pnwmva3a4sn62w7r8blik4j3z1"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; };
 490  IMAS = derive2 { name="IMAS"; version="1.22.0"; sha256="1kc30iq5myxqx81kl9pkwm2lydg0n8prch7f4nvm175myyni0950"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; };
 491  IMMAN = derive2 { name="IMMAN"; version="1.18.0"; sha256="1kmpg3zlhdg9b4dgj2r1v67kdpj17383v85ycik35lvpa2dh9xa6"; depends=[Biostrings igraph seqinr STRINGdb]; };
 492  IMPCdata = derive2 { name="IMPCdata"; version="1.34.0"; sha256="1gasv2i11sfdsinpg46b1lmjc8g864wzjg3791zx43ls1qnslgdh"; depends=[rjson]; };
 493  INDEED = derive2 { name="INDEED"; version="2.12.0"; sha256="14ivj70sdzii9cqm5qh76r92i7pscr4scix7pn6s5zfs7g2z5sri"; depends=[devtools glasso igraph visNetwork]; };
 494  INPower = derive2 { name="INPower"; version="1.34.0"; sha256="07sjr0z3m1jchlxc1pqp97l4mydskbkh1xw41cwsw39r9ssimpni"; depends=[mvtnorm]; };
 495  INSPEcT = derive2 { name="INSPEcT"; version="1.28.0"; sha256="126cbanan2fr916spacw6lm8hzkys56k7z3gq0r351zd7q13gky3"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; };
 496  IONiseR = derive2 { name="IONiseR"; version="2.22.0"; sha256="1xkxqavhcw22lhij87cpd5ps1ldkzzi0pp93d38pxbbhj15gc3d3"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; };
 497  IPO = derive2 { name="IPO"; version="1.24.0"; sha256="0hj1kprkkv9ab0akblb89ww0iwsqlnr0r6d8i079fif197ikfr08"; depends=[BiocParallel CAMERA rsm xcms]; };
 498  IRISFGM = derive2 { name="IRISFGM"; version="1.6.0"; sha256="1dhnv62p9crdrqi4kla33hykl4ag7agcb298ycgszc4h8mmslgrc"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; };
 499  IRanges = derive2 { name="IRanges"; version="2.32.0"; sha256="0jvavhl6p2di0n5176gg7shfmpg79rngl2gaw423icswdf8kay89"; depends=[BiocGenerics S4Vectors]; };
 500  ISAnalytics = derive2 { name="ISAnalytics"; version="1.8.1"; sha256="0lshyr3mg3w3h4annx0ssjv9njlyz3z79gl3sw2dq0g7viipd6pv"; depends=[bslib data_table datamods dplyr forcats fs ggplot2 ggrepel glue lifecycle lubridate magrittr psych purrr Rcapture readr readxl rlang shiny shinyWidgets stringr tibble tidyr]; };
 501  ISLET = derive2 { name="ISLET"; version="1.0.0"; sha256="0iwcdvq5dzvdsiwchlmlzfay10x5ci35i905xkiil6a77l9s57iq"; depends=[BiocGenerics BiocParallel Matrix SummarizedExperiment]; };
 502  ISoLDE = derive2 { name="ISoLDE"; version="1.26.0"; sha256="07xw0cg121xcv85d4ah67a38x3y8h6gxx8zwrwqffp86vfzqwcgl"; depends=[]; };
 503  ITALICS = derive2 { name="ITALICS"; version="2.58.0"; sha256="0g937h9zxkxnm424wh58b46mfasdd7pqy5c04r0a46mx9lxibgbs"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; };
 504  IVAS = derive2 { name="IVAS"; version="2.18.0"; sha256="0nhmxxj0gdbsx18a2cn2905ylf1m6h514ak51fxfrl3krcjz3flr"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; };
 505  IWTomics = derive2 { name="IWTomics"; version="1.22.0"; sha256="18mdhld2m3pjfmnaryfvdaa0z6h87hjcy0dkx5vkpjn9ph0cc7pq"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; };
 506  Icens = derive2 { name="Icens"; version="1.70.0"; sha256="13ygc467nqh0235sf1ags1ihv7pg2yriva6qi7z46c534vxv6b8n"; depends=[survival]; };
 507  IdeoViz = derive2 { name="IdeoViz"; version="1.34.0"; sha256="0jpj8bkfm3jcb5fj0xhh13vqh2dcgdgi4i1qk3wx1301irkk7fgf"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; };
 508  IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.12.0"; sha256="1bzj6ckkwj430pwzy4nysk0k0vbjpa9mgibgabl03m7n33irxvza"; depends=[BH Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders SummarizedExperiment]; };
 509  ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.26.1"; sha256="18vsz5cc4nyf5jqwwmfbics5cahf38p48a7gd75xbf6q542vmg8n"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; };
 510  InPAS = derive2 { name="InPAS"; version="2.6.0"; sha256="1xbkz7g8yw43dbqkck42ikgrwi7yym39kbj65gpc4fyjyg5wkhln"; depends=[AnnotationDbi batchtools Biobase Biostrings BSgenome cleanUpdTSeq depmixS4 dplyr flock future future_apply GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr parallelly plyranges preprocessCore readr reshape2 RSQLite S4Vectors]; };
 511  InTAD = derive2 { name="InTAD"; version="1.18.0"; sha256="1fgrais14665nz0cbsmzgzawp6vzlv5v4qdbn56lvwfr4svd39ly"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; };
 512  Informeasure = derive2 { name="Informeasure"; version="1.8.0"; sha256="0ywffwxl3nx7w7p54ixlr058l92s2d17mrnfj9ngqxl7w3g16vfp"; depends=[entropy]; };
 513  IntEREst = derive2 { name="IntEREst"; version="1.22.2"; sha256="0cb3bwjcjh8ixqiys7279w12mwcx3fz5k31qpakc1mgj2nvgqsnf"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; };
 514  InterCellar = derive2 { name="InterCellar"; version="2.4.0"; sha256="1aqx98w4nnmb2xmrs70wqpywvq39qdmsna021ywxnyapd27w27l1"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; };
 515  InterMineR = derive2 { name="InterMineR"; version="1.20.0"; sha256="0rp6fyhlk3dp22z5anfzx2fjw23azm4hajv67spayh8j8q9fsmkm"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; };
 516  InteractionSet = derive2 { name="InteractionSet"; version="1.26.1"; sha256="1nk8jhabbrirpyjd1wdy2fjk8y2qi1bsjmgqzh0qi1c83n0ccz5d"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; };
 517  InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.6.0"; sha256="14slb0g72d8ikfl7f2ir6gmxdkry6gsjgh3irxgkkjy9q880zpqi"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; };
 518  IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.20.0"; sha256="1l6bf5v1mvsmj4zqv19zfji52d6w1y08p1grqlzh6j01xjhvpz5a"; depends=[FGNet igraph knitr]; };
 519  IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.16.0"; sha256="1a298xaf8ricx09bv8hxy4d67ii57vz53rbac2kqszdg2pkfayzp"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; };
 520  IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.14.0"; sha256="1rm1vspgfd2733y1y828awz4hwn3qqhmfsx8lld6814iqrv63mxh"; depends=[IsoCorrectoR readxl tcltk2]; };
 521  IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.20.0"; sha256="06kcx0a7xxzqhf4y8l69my5chh06sfahsaz6anhana7shym3yif5"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; };
 522  KBoost = derive2 { name="KBoost"; version="1.6.0"; sha256="1w7m30dpjwbkgvvhvllgycnrzalah4lnan08xpr3cyx7nbr0pbsb"; depends=[]; };
 523  KCsmart = derive2 { name="KCsmart"; version="2.56.0"; sha256="1v7hl0lwr407fap71q8wsdz3d3ac2nq1blaz9wn8jb5j3yqkdwy3"; depends=[BiocGenerics KernSmooth multtest siggenes]; };
 524  KEGGREST = derive2 { name="KEGGREST"; version="1.38.0"; sha256="0623p6px259v000pp14c2rknjgivx9c90b626q9bln0qw6wy97zc"; depends=[Biostrings httr png]; };
 525  KEGGgraph = derive2 { name="KEGGgraph"; version="1.58.3"; sha256="1s5j7zdp8ck4vhca81i4b6qclhwi56gmz8brawrxj3szvwmxf3y6"; depends=[graph RCurl Rgraphviz XML]; };
 526  KEGGlincs = derive2 { name="KEGGlincs"; version="1.24.0"; sha256="1xq10x5cirp2x3amrvprggsf8mvibfh40wa7fdnmkj8y2igf2r4z"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; };
 527  KinSwingR = derive2 { name="KinSwingR"; version="1.16.0"; sha256="051z4fcwis14ic4mz36d4aiixx3m6nndi2kj3yzykf1p1hwksq3g"; depends=[BiocParallel data_table sqldf]; };
 528  KnowSeq = derive2 { name="KnowSeq"; version="1.12.0"; sha256="0cxr3f67654h3nyjm4yaghw22wdb67jqg37685haffv1dkvfkcwl"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; };
 529  LACE = derive2 { name="LACE"; version="2.2.0"; sha256="16z28avyljma30kpp4ygw76yc7h3brz4sldpr6zailnrqaxkrzmd"; depends=[biomaRt bsplus callr configr curl data_table data_tree doParallel dplyr DT foreach fs htmltools htmlwidgets igraph jsonlite logr Matrix purrr RColorBrewer readr Rfast shiny shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyvalidate sortable stringi stringr SummarizedExperiment tidyr]; };
 530  LBE = derive2 { name="LBE"; version="1.66.0"; sha256="00460w36ayf0b9ln7v42i3wwmxyfy1hdm0snc01gaxf5276mvrai"; depends=[]; };
 531  LEA = derive2 { name="LEA"; version="3.10.2"; sha256="01w8s03ncscd17zpmqz7vjblz6kcag0mlgn7xhcjd0ghbfb7zkrf"; depends=[]; };
 532  LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.24.0"; sha256="0xhrdq5s5cn6vvp2h1pp871vncmxjkr9dmzb9hrykpc8pfvbj9w7"; depends=[CAMERA xcms]; };
 533  LOLA = derive2 { name="LOLA"; version="1.28.0"; sha256="00fk1drjwc7smbykq3qcl382qqd7kcjpcamklq48pqgy2mbjyk9d"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; };
 534  LPE = derive2 { name="LPE"; version="1.72.0"; sha256="06wmkwx633a3jjqhcp586x9jqic51sxyy11l8zhipzvj07fcsy70"; depends=[]; };
 535  LPEadj = derive2 { name="LPEadj"; version="1.58.0"; sha256="0cm8hdwfs0nrxyf6z1xwfjkpxawlh9mszmng4jakppcr9rl843ir"; depends=[LPE]; };
 536  LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.8.0"; sha256="1fgvck20w1gix7slszgsjnss4b85mp0nkb9x4sl3a0nl9qfsjz1a"; depends=[AnnotationDbi Biobase DBI RSQLite]; };
 537  LRcell = derive2 { name="LRcell"; version="1.6.0"; sha256="0n5z47b4gdfyrzqrjc7dw0ja2526k71axjr3001gdfm7mx09gvmv"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; };
 538  LedPred = derive2 { name="LedPred"; version="1.32.0"; sha256="11rjnc9l88hlfwz7ppmliisx3m55nllmnikxiwjr6a6fx7rbhnk4"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; };
 539  LinTInd = derive2 { name="LinTInd"; version="1.2.0"; sha256="0nxjy9lrfid73dspmxdpc7davcnckl63s9bl796r6vmwkkcqfy76"; depends=[ape BiocGenerics Biostrings cowplot data_tree dplyr ggnewscale ggplot2 ggtree IRanges networkD3 pheatmap purrr reshape2 rlist S4Vectors stringdist stringr]; };
 540  LineagePulse = derive2 { name="LineagePulse"; version="1.18.0"; sha256="197ki29dbnm5lidlp45nidvskxpa7mdhihmlfz6qkvnbfr8c3rhg"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; };
 541  LinkHD = derive2 { name="LinkHD"; version="1.12.0"; sha256="02yr5lmqxkpsgqfb1jjzy1cd9mfcg2q50szjji3mdadyg2c8i8rg"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; };
 542  Linnorm = derive2 { name="Linnorm"; version="2.22.2"; sha256="0snsvyy8d85panizm848mrmjpgyc06iqp39d19rny3fphq3adwn5"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; };
 543  LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.52.0"; sha256="0jf0njw4xib0wf24k2g64jg3agglf0jc9fymcjvagc70z9pm18k3"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; };
 544  LoomExperiment = derive2 { name="LoomExperiment"; version="1.16.0"; sha256="1bjqg5krzxm3v1mcy208ccbs2d1aljkbpav6qz6zgwmwpsci99dz"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; };
 545  LowMACA = derive2 { name="LowMACA"; version="1.28.0"; sha256="0j5233xziszwak65rypd9f8lsp25sdr4j5nm5kanj4d4wd0zsdqv"; depends=[BiocParallel Biostrings cBioPortalData data_table gridBase httr LowMACAAnnotation motifStack plyr RColorBrewer reshape2 stringr]; };
 546  LymphoSeq = derive2 { name="LymphoSeq"; version="1.26.0"; sha256="1wlyk3gpy7j5ml3n3xs6mmxi9bv1ixs6gw7i2rkb513wnrxb9bg7"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; };
 547  M3C = derive2 { name="M3C"; version="1.20.0"; sha256="1djgbnxsdp1w9hhc6346gmvad3x8avy8nc85gpvg9i4x52wcrn4j"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; };
 548  M3Drop = derive2 { name="M3Drop"; version="1.24.0"; sha256="1h8y27d0dnmg4k31wl2k556r4h7n7iq2536770z7ci0ir0i0y4b6"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; };
 549  MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.12.0"; sha256="1lxq7fanfypbzrh2il4ib9fplz6hmr0y3cdg9waplvrf1scqc8pp"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; };
 550  MACSr = derive2 { name="MACSr"; version="1.6.0"; sha256="0ksbmj8jh87nb60h1lfwz4gx40lpryc125dh554wsy48i0kv82cs"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; };
 551  MADSEQ = derive2 { name="MADSEQ"; version="1.24.0"; sha256="025ny68gcsd5pbj9g8vrnzymgq52nq72zbwsvgjl7f2b6jnbd6w9"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; };
 552  MAGAR = derive2 { name="MAGAR"; version="1.6.0"; sha256="145xnlnkpqmb18jawwizr53y4lw9d1nxc4k60lpvl2z2fn8hm3v5"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; };
 553  MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="2.2.0"; sha256="1p58hcsmhgia1rlr064nfbd3kf0rlmnvabxlr2hpkw8b1hmcvrz0"; depends=[Biobase clusterProfiler depmap DOSE enrichplot ggplot2 ggrepel gridExtra msigdbr pathview reshape2]; };
 554  MAI = derive2 { name="MAI"; version="1.4.0"; sha256="01cpiiwzxkar8zr4q6bs2mbkh1hqszr71gzmbbp9z0b88805arm8"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; };
 555  MAIT = derive2 { name="MAIT"; version="1.32.0"; sha256="0i5n1bjc8bn4cx5b17d57m6fhk4m486cqnj6cn1zyyw0zy8z5sg4"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; };
 556  MANOR = derive2 { name="MANOR"; version="1.70.0"; sha256="16b30bmyzml97cjdbh6h9ky5c4h5ws2a3g2xkxnd55sd3jg64jgx"; depends=[GLAD]; };
 557  MAST = derive2 { name="MAST"; version="1.24.1"; sha256="1c0lc4abnb859x481ky6d3kc9zzxwvf4kqgwxyqapc4g72b4vh65"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; };
 558  MBASED = derive2 { name="MBASED"; version="1.32.0"; sha256="09v229vgxwhf3vx8nx2zb0g6rzqgfs91w44ly5y5r8rq2n9qa0lz"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; };
 559  MBAmethyl = derive2 { name="MBAmethyl"; version="1.32.0"; sha256="06jhcv8nw21qnzbf9law4dvrgga47di02q3124sf5v365zasnzr5"; depends=[]; };
 560  MBCB = derive2 { name="MBCB"; version="1.52.0"; sha256="1376537z1hzc3wb791nr13icp1h04z4jmfga2kszxsza4iw01hnr"; depends=[preprocessCore tcltk2]; };
 561  MBECS = derive2 { name="MBECS"; version="1.2.0"; sha256="10pyc41h3r2z5f0r7l7cg0cdyaxc2psm4q2d08dsddh8lpyc4v85"; depends=[cluster dplyr ggplot2 gridExtra limma lme4 lmerTest magrittr Matrix pheatmap phyloseq rmarkdown ruv sva tibble tidyr vegan]; };
 562  MBQN = derive2 { name="MBQN"; version="2.10.0"; sha256="138a7qfqcy904vlycbaif3wn9k1iwjafwvadbm3nscpz4k9x7phb"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; };
 563  MBttest = derive2 { name="MBttest"; version="1.26.0"; sha256="0jgyigd60bbqrkg640i6lv2lx6k52il0k9lnrcg67v5z0xrhrrqx"; depends=[gplots gtools]; };
 564  MCbiclust = derive2 { name="MCbiclust"; version="1.22.0"; sha256="09sl5bk56wgs0hih492n4qscdc6nx68w6nx0cxr0pjhdvgrybli0"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; };
 565  MDTS = derive2 { name="MDTS"; version="1.18.0"; sha256="1jbkv7fpqla3l9hpr1g6yn152653agvmnpcljgnl01mx392xnblf"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; };
 566  MEAL = derive2 { name="MEAL"; version="1.28.0"; sha256="17wy534ir65vjv69m55pd6vvfdhyl5w170wbm91r5l7ri1y0r9sl"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; };
 567  MEAT = derive2 { name="MEAT"; version="1.10.0"; sha256="150cs39xf0fnvwh76vvhf6f6ill5gqmh7cf2svhi19lldg4a569n"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; };
 568  MEB = derive2 { name="MEB"; version="1.12.0"; sha256="0axd2kahwy5sc6pp2bxdi4ahb6mwfsgbhbcm51l3g5jr898z8xia"; depends=[e1071 SummarizedExperiment]; };
 569  MEDIPS = derive2 { name="MEDIPS"; version="1.50.0"; sha256="1zb0w4d6qvzrb5xp0bfcc2mfxyj618ghw3ifhx9yhl7pqp8c8ny1"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; };
 570  MEDME = derive2 { name="MEDME"; version="1.58.0"; sha256="0qli5ipyv3q5qvpmp1cdqvgzl6giarg458apqyspzapwvvnn9967"; depends=[Biostrings drc MASS]; };
 571  MEIGOR = derive2 { name="MEIGOR"; version="1.31.0"; sha256="134253lygmwszxq2bj38iydd44rkas10cbjnz3dikn90gg0xhada"; depends=[CNORode deSolve Rsolnp snowfall]; };
 572  MGFM = derive2 { name="MGFM"; version="1.32.0"; sha256="0ih7hkziajyf9flxg0grfydqylvk0qr7v1wrbp1wyfh2d1bkl8l9"; depends=[annotate AnnotationDbi]; };
 573  MGFR = derive2 { name="MGFR"; version="1.24.0"; sha256="0r7gka30g17v22rsc059p6fwdcdpyb7n2pl93prpbkpv39lzcik3"; depends=[annotate biomaRt]; };
 574  MIGSA = derive2 { name="MIGSA"; version="1.21.0"; sha256="0b7w9lzi8xb1vzh7zahw7wh9jm7x1y04rs2gvvjmfbdfw085rdpm"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; };
 575  MIMOSA = derive2 { name="MIMOSA"; version="1.36.0"; sha256="10c07s0l2hshcvy4ym3mgq7k9569l5am2k4mx83wxwicidv607hi"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; };
 576  MIRA = derive2 { name="MIRA"; version="1.20.0"; sha256="0709kl7m1nj5jbvlsr4hfk5pr268vgvig8wq353wc7wqwq0j1yhn"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; };
 577  MLInterfaces = derive2 { name="MLInterfaces"; version="1.78.0"; sha256="0xnaghm65ydk01gzx5g38jyq7vfdw206c2w59k0qg8lhy9fqky9x"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny SummarizedExperiment threejs]; };
 578  MLP = derive2 { name="MLP"; version="1.46.0"; sha256="024h8mrwpfp6nkdzk6y6v0jhng1z78h47mxb36gy1mbklhknllbv"; depends=[AnnotationDbi gplots]; };
 579  MLSeq = derive2 { name="MLSeq"; version="2.16.0"; sha256="040gm8bnp110mhj05whkdrfl46lrm82fkyh6zba50aap8s2mp2b4"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; };
 580  MMAPPR2 = derive2 { name="MMAPPR2"; version="1.12.0"; sha256="0rvhvsyg2g1i8kipvg83c19nyr7xj061fnda9j771mbgagcbwma5"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; };
 581  MMDiff2 = derive2 { name="MMDiff2"; version="1.26.0"; sha256="0rhnlzci5zs2if3lzzn2nif3x72a42fpxkm6v83d3krw9kb9jvvd"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; };
 582  MMUPHin = derive2 { name="MMUPHin"; version="1.12.1"; sha256="0vpap3avmrjy187s3dva6f008al6d935kpdf816xzl5gxl7zvf62"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor stringr tidyr]; };
 583  MODA = derive2 { name="MODA"; version="1.24.0"; sha256="17bfazy4wxb8idrn8frf43nrggn5n0w4bsxzmlhxjq0jm0c9ki25"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; };
 584  MOFA2 = derive2 { name="MOFA2"; version="1.8.0"; sha256="1i8i7n9iki16nmwmh5fs9afj0vqls38sj7vgxjacdsldcdwxz6h0"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; };
 585  MOGAMUN = derive2 { name="MOGAMUN"; version="1.8.0"; sha256="0rpz06rvxxxsgwb6xnk65mp2kz4jvhsr06qvkkknmyxc7q66ycb0"; depends=[BiocParallel igraph RCy3 RUnit stringr]; };
 586  MOMA = derive2 { name="MOMA"; version="1.10.0"; sha256="048lvnqa3wpi4bg7j8kh8dl358zppzrb3xg5ghdgk99xbanwmkqy"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; };
 587  MOSim = derive2 { name="MOSim"; version="1.12.0"; sha256="0x49p6f9q6vc8yn5nql9ryjd85zcimw3hy8n5wklwpx4bc3xadjs"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; };
 588  MPFE = derive2 { name="MPFE"; version="1.34.0"; sha256="0xr4cpvr83c7mmcbm99bbgg05qd20y5vha73m4if4d8ba1l7k2mv"; depends=[]; };
 589  MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.16.0"; sha256="1pgl0q4il2ywnbdb8pmhrwqlmjk4i5xkv8va933748fijy194pw8"; depends=[BiocParallel progress SummarizedExperiment]; };
 590  MQmetrics = derive2 { name="MQmetrics"; version="1.6.0"; sha256="0ch0qcgdzdz0035b2nm468q0vsvk9blws6szq7261znfvwmqpzxw"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; };
 591  MSA2dist = derive2 { name="MSA2dist"; version="1.2.0"; sha256="1248xchv7nk47w1lp61nqyhmmrfnm9vgjiiwn7ikb417hxcryay7"; depends=[ape Biostrings doParallel dplyr foreach GenomicRanges IRanges Rcpp RcppThread rlang seqinr stringi stringr tibble tidyr]; };
 592  MSPrep = derive2 { name="MSPrep"; version="1.8.0"; sha256="05bq27v2iwmrf92y6fyzczvnrwmpqy5b7faa3z4si68fhpa81p2s"; depends=[crmn dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; };
 593  MSnID = derive2 { name="MSnID"; version="1.32.0"; sha256="1ljhxbyq5pa32sh44f06cwcdq79xh5nm51bpx1i8xig3bvwyg7p9"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; };
 594  MSnbase = derive2 { name="MSnbase"; version="2.24.2"; sha256="0jdq41rhn9qyhxfihvrgim76fzdrycc02wjsjdrff42gmray49w7"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; };
 595  MSstats = derive2 { name="MSstats"; version="4.6.5"; sha256="12gxr7615fp4yks0mqs6ikzhalihf0bq7kkc7sflpjqgzdv3jmws"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo statmod survival]; };
 596  MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.8.3"; sha256="1488vl6ijnb415510pa381206xjwzn64bjvvz4vm0s80h6bzpsix"; depends=[checkmate data_table log4r stringi]; };
 597  MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.6.0"; sha256="1hg9bjx9rwsdpj65mzd931lbyj4gb26x32mly4n1gkk1rf6iplry"; depends=[ggplot2 minpack_lm Rcpp]; };
 598  MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.4.1"; sha256="0hj10r3x1pql0497x3clk9wlv8xvbcvbv35q45x1ki8hfc5b3ifc"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; };
 599  MSstatsPTM = derive2 { name="MSstatsPTM"; version="2.0.3"; sha256="1n0hf9xxqpq5yp23hdlv0ki919m69adr6a0m7577zx0icg30c0gy"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; };
 600  MSstatsQC = derive2 { name="MSstatsQC"; version="2.16.0"; sha256="1x55d2saf8y45pp4rsln6km8iqzv14pzrsw3bjc2x6z67v837f5i"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; };
 601  MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.18.0"; sha256="0mbflhwlvrq18k6gavsj2d32ihxgnaww8zdncadxwnlgv6p083kd"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; };
 602  MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.12.0"; sha256="1xwb8bm92jlm2q1047v02x9v69h305l940s2a8dxjqpb42bhg1nf"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; };
 603  MSstatsShiny = derive2 { name="MSstatsShiny"; version="1.0.10"; sha256="16a42xw5cyd9dv4mnsldnkqwpc2rc2lcc40xjar36az756idm89w"; depends=[data_table dplyr DT ggplot2 ggrepel gplots Hmisc htmltools marray MSstats MSstatsConvert MSstatsPTM MSstatsTMT shiny shinyBS shinybusy shinyjs tidyr uuid]; };
 604  MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.6.1"; sha256="1h5vdyg3sifi33i6airssraf2pljqmnh2l3xjyq18vjcbcs4bgzi"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; };
 605  MVCClass = derive2 { name="MVCClass"; version="1.72.0"; sha256="1yzb7m7vk50f9x1g8yb95wlmpccj3n4qgczz46lvhsk7hkifybzq"; depends=[]; };
 606  MWASTools = derive2 { name="MWASTools"; version="1.22.0"; sha256="1j6ixgir3mjx8xdclh2wisp82xx6ardm4rm6cz6ihdss2y34w6wi"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; };
 607  Maaslin2 = derive2 { name="Maaslin2"; version="1.12.0"; sha256="0ncvsywn9f8766gjb8nxzg82p3w30g8pjs85sy8s0bz9ilanpy89"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging lpsymphony MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase vegan]; };
 608  Macarron = derive2 { name="Macarron"; version="1.2.0"; sha256="14fbijbjs73piprh6irlclr4yv87waiw6wv91sz5iw1pxrhp7pli"; depends=[BiocParallel data_table DelayedArray dynamicTreeCut ff logging Maaslin2 plyr psych RCurl RJSONIO SummarizedExperiment WGCNA xml2]; };
 609  MantelCorr = derive2 { name="MantelCorr"; version="1.68.0"; sha256="0d42m4zbc6pzfph2ydb11rcxq7h64fvv286zx1vh2scvi8j9655a"; depends=[]; };
 610  MassArray = derive2 { name="MassArray"; version="1.50.0"; sha256="0jxlnl466dgbn0817h5vk5h52cblyq1r48pvk9v76dzdc86llskx"; depends=[]; };
 611  MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.64.1"; sha256="0p8cd4r3c8va5gybs1vlm3kn7jcg1xg529hvvg27fybb3g91nvqg"; depends=[]; };
 612  MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.10.0"; sha256="05a83gh5bvgadi2msgql5nmcgr8zp398rhdbmiqna608hqbymyq9"; depends=[matrixStats]; };
 613  MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.6.1"; sha256="1l0wnfyg3wgjr35qrqdh1916bklbvf7s43nsc05vqfsccs9a9a7k"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma MASS pcaMethods plotly proDA rlang rmarkdown Rtsne shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vsn]; };
 614  MatrixRider = derive2 { name="MatrixRider"; version="1.30.0"; sha256="1y4h57n7bg6hmaszq1bzf1qlyl2p378928inca7s68ygigibsh6l"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; };
 615  MeSHDbi = derive2 { name="MeSHDbi"; version="1.34.0"; sha256="1lg13vqlw3ibjpssbgwg1mpy778v22xnrr92wjfqpn8s4h057z9f"; depends=[AnnotationDbi Biobase RSQLite]; };
 616  MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.70.0"; sha256="1j6scmghs6mmi0wyfxy6hsf363r90wy7njq1334xaq4crbj3kag9"; depends=[]; };
 617  Melissa = derive2 { name="Melissa"; version="1.14.0"; sha256="005am6j14nxp0qwyvg870349szpybx3p0fmyiwjl3zghzma41xfa"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; };
 618  Mergeomics = derive2 { name="Mergeomics"; version="1.26.0"; sha256="1svw7jk4xv0xm66qr5w2m2fz9k4ifd8dv52b5157p5apv45jdd45"; depends=[]; };
 619  MesKit = derive2 { name="MesKit"; version="1.8.0"; sha256="04c6y9hv49db4dy8iv122lvawhc9f8vj66ipzh6qfvgbhqm8lgc0"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; };
 620  MetCirc = derive2 { name="MetCirc"; version="1.28.0"; sha256="1vpn9mpn6fyrvnp4rfc37s5z80bamb73d2w8484x1aim3vl467ly"; depends=[amap circlize ggplot2 MsCoreUtils S4Vectors scales shiny Spectra]; };
 621  MetID = derive2 { name="MetID"; version="1.16.0"; sha256="1zxhqvx6zhy8zxckih3pnafzqyivygq2iw5scvv0cv01hhkj1ac5"; depends=[ChemmineR devtools igraph Matrix stringr]; };
 622  MetNet = derive2 { name="MetNet"; version="1.16.0"; sha256="0d52ib51j44ic8zy0x1hmmi0q1l71n03qcra7sza0d46dpna6k8g"; depends=[BiocParallel bnlearn corpcor dplyr GeneNet GENIE3 ggplot2 parmigene psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; };
 623  MetaCyto = derive2 { name="MetaCyto"; version="1.20.0"; sha256="007lwh9yxvvdr5xhnrz3krh6v9vfi386jh1040x2cnw2x5p2hjjd"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; };
 624  MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.18.0"; sha256="1gjjp5qlmv26sd3fvrd8cgv3invckxr8ldjpizpqm4mxjzifxwpm"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; };
 625  MetaPhOR = derive2 { name="MetaPhOR"; version="1.0.0"; sha256="12imh3zwgrcaqc6gb0p6jhhb37km8j7n6cfp3d5s1rhcg2c180kx"; depends=[clusterProfiler ggplot2 ggrepel pheatmap RCy3 RecordLinkage stringr]; };
 626  MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.12.0"; sha256="08m1a3gpl2zx8yw60h3y430jflagcl7c5gn9wljl043vr84rnxpi"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; };
 627  Metab = derive2 { name="Metab"; version="1.32.0"; sha256="0qllncdvvab093gns9jb39kqvb4v8mm61aiva4hmy5hc2sk32blv"; depends=[pander svDialogs xcms]; };
 628  MetaboAnnotation = derive2 { name="MetaboAnnotation"; version="1.2.0"; sha256="03731wq7vx52l986fg32mw42f95mvzmrarppnrjfg80dwsnj9qgp"; depends=[BiocGenerics BiocParallel CompoundDb MetaboCoreUtils MsCoreUtils ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; };
 629  MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.6.0"; sha256="14y53snkyis1njx0vr7hy9jmn4lbw72k14x74spmsslcik2zadav"; depends=[MsCoreUtils]; };
 630  MetaboSignal = derive2 { name="MetaboSignal"; version="1.28.0"; sha256="1771mmdlk1i17lx51fcjv0lifc11rkk6x6qv5k03bq1fka5nfnnl"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; };
 631  MethCP = derive2 { name="MethCP"; version="1.11.0"; sha256="099jaadjfalvxpwq3k630yrqa1dfbp8rqn2fahz1rsha3y5z9bys"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; };
 632  MethPed = derive2 { name="MethPed"; version="1.26.0"; sha256="02vjnxzl72np2skgr6kj2vfkpf9i1ll0sdicfajr5rgsjzlnjpjh"; depends=[Biobase randomForest]; };
 633  MethReg = derive2 { name="MethReg"; version="1.8.0"; sha256="09vzarsmjm06fvgay0ysmi5f81g921dx513i1w2s6k97d8zv7z3f"; depends=[AnnotationHub DelayedArray dplyr ExperimentHub GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesame sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; };
 634  MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.30.0"; sha256="1rz12vh0j96wh7chzbk88f97fbg49g433ahb0c55lkgqn6ql7r1g"; depends=[Biostrings gplots seqinr stringr]; };
 635  MethylAid = derive2 { name="MethylAid"; version="1.32.0"; sha256="1kzfwvjb8rzv5jghvzgfc9p85727b0v13lc8dibn4016mgap06vk"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; };
 636  MethylMix = derive2 { name="MethylMix"; version="2.28.0"; sha256="0687kfbcj11x5idbdkkhymqxjl2f2k877wqzx506djmxlbqgac60"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; };
 637  MethylSeekR = derive2 { name="MethylSeekR"; version="1.38.0"; sha256="0db4fxli829x3na4adzmk41rf3zwp33xzmj49w9n9c8s8k5bhagj"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; };
 638  Mfuzz = derive2 { name="Mfuzz"; version="2.58.0"; sha256="01kdccfjs01a2ya22g9zig78pjvi96aq9d14js8jvf8h868wmffz"; depends=[Biobase e1071 tkWidgets]; };
 639  MiChip = derive2 { name="MiChip"; version="1.52.0"; sha256="1ichljymsal8mnanqck89243lwpf184r47jknd56ksvpn2s6a0ja"; depends=[Biobase]; };
 640  MiPP = derive2 { name="MiPP"; version="1.70.0"; sha256="08ini3nj077k7knp3zsmw33yc0wpsnszd75dnp9vdn141d1kvsmx"; depends=[Biobase e1071 MASS]; };
 641  MiRaGE = derive2 { name="MiRaGE"; version="1.40.0"; sha256="19jgv2sgqiqqyqcbfivj8a4qrb18ryyl74rpp3805iisx44rnbkl"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; };
 642  MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.4.0"; sha256="1pl2kd24h88xs0asby3zz2agx64carkd0sjm5l3mj1340b77qk5l"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; };
 643  MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.10.3"; sha256="02f26km8za90b3a7d7ym7bmx954jy3i1z81plkr0dy5wihk4lc8g"; depends=[ape Biostrings cli coin data_table dplyr dtplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar plyr rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; };
 644  MineICA = derive2 { name="MineICA"; version="1.38.0"; sha256="0qfk61qfw94r3ynzzvqxr9flswxbrfriw3n3yv499gk33cswb459"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; };
 645  MinimumDistance = derive2 { name="MinimumDistance"; version="1.42.0"; sha256="0r59a27nl6l28ck3mm4icpahplgxqpqzibiahw265fsl8yzx2zk7"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; };
 646  MobilityTransformR = derive2 { name="MobilityTransformR"; version="1.2.0"; sha256="0i8ljpjhvvfa1wg8ycm9pl0l0v3zwr4q7yr4n99nb88d54z89a5q"; depends=[MetaboCoreUtils MSnbase Spectra xcms]; };
 647  ModCon = derive2 { name="ModCon"; version="1.6.0"; sha256="1whwmf7qma0xz8bjqww6vr2idazgqlykd5mmf0xzryr1xdfbk54h"; depends=[data_table]; };
 648  Modstrings = derive2 { name="Modstrings"; version="1.14.0"; sha256="0r9smk5026pv6487xna1qsv9a6lc044xpzslbrddxyhgv0d8dz2m"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; };
 649  MoonlightR = derive2 { name="MoonlightR"; version="1.24.0"; sha256="17xff4sp4raqwcqgl2fc1j0k2s299cd3g0d5kdmmily7wvjnfrgz"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; };
 650  Motif2Site = derive2 { name="Motif2Site"; version="1.2.0"; sha256="19qjkcqrsag2gycwqmmn19d2vnkn2graa8sidhi1vl0nna5ycm36"; depends=[BiocGenerics Biostrings BSgenome edgeR GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS mixtools S4Vectors]; };
 651  MotifDb = derive2 { name="MotifDb"; version="1.40.0"; sha256="122ifxmbi0v3192cd9chq265i3dyw3hzwsndq3w97f4d68vll7gl"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; };
 652  MouseFM = derive2 { name="MouseFM"; version="1.8.0"; sha256="0cp0y793d4mvz5kh7rl7ysl969qvwg7dvrvqjh2i9hax47s865jg"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; };
 653  MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.6.1"; sha256="1kvjqn97ccjfpvvla7v4cql085nb53ndwixysqp55x2sab5hj8r3"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; };
 654  MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.6.0"; sha256="0r02fl6fq0g7l7mdlza89x1zkm3c16sf4wr1yrqygfmxf47q58xa"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; };
 655  MsBackendMsp = derive2 { name="MsBackendMsp"; version="1.2.0"; sha256="122s5agwac8wzsdj1igjyk8dgi5vgxd2bhymcp61sx5l1x7c0678"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; };
 656  MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.4.0"; sha256="13bkjbk5h4dr719942bghiqprrkgwg7z82vh88cn8jf8vg2bd43d"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; };
 657  MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.10.0"; sha256="1shrvb2vmvk1m6xk59jqpvrxi8vzcr978aalbx1gjcmaqf6abzcq"; depends=[clue MASS Rcpp S4Vectors]; };
 658  MsExperiment = derive2 { name="MsExperiment"; version="1.0.0"; sha256="031j106yaf1nal7nf5avg6kg216w3fplcnici8j45dwfd31kjis9"; depends=[IRanges ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; };
 659  MsFeatures = derive2 { name="MsFeatures"; version="1.6.0"; sha256="1q1224w31wdaagfv8ysc1w0d0n34y547c0jzkff1vxri9pb0w1j1"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; };
 660  MuData = derive2 { name="MuData"; version="1.2.0"; sha256="0xi8ldjv7nij11fggaqk91wdyf1nbv66hzqxy3y67hj0rkqxakv5"; depends=[DelayedArray Matrix MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; };
 661  Mulcom = derive2 { name="Mulcom"; version="1.48.0"; sha256="0r900mhq2yi7gv1y9vh9lvaz97mk785ih8lvndncg0q6xg0mfq4v"; depends=[Biobase fields]; };
 662  MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.24.0"; sha256="00lhnqa4yz3lm5kl79bghad93iijihnassy2caf87czc540why09"; depends=[Biobase BiocBaseUtils BiocGenerics DelayedArray GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; };
 663  MultiBaC = derive2 { name="MultiBaC"; version="1.8.0"; sha256="0a3snl5djp9z0ggd39dmz0qgr0cvapsd2zs3xbwqah3dxafwsh2k"; depends=[ggplot2 Matrix MultiAssayExperiment pcaMethods plotrix ropls]; };
 664  MultiDataSet = derive2 { name="MultiDataSet"; version="1.26.0"; sha256="1qja5xd42wh8qbcil4hhnmh9zlby2gfglax2qbf5bzg3h6yzpy4g"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; };
 665  MultiMed = derive2 { name="MultiMed"; version="2.20.0"; sha256="09snrrgifz5wl9a0av87rccq8fh1d03h38i6x2lfmpak5m1vc270"; depends=[]; };
 666  MungeSumstats = derive2 { name="MungeSumstats"; version="1.6.0"; sha256="1sng3gra750pa0nm1jfpri2pha9n8rs1ncn42ddjfm330w45wqpg"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr IRanges jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; };
 667  MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.8.1"; sha256="0d0fsc4x8psfd93asi2d5kq1888s963d3s8kcihd5knqah000mh8"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; };
 668  NADfinder = derive2 { name="NADfinder"; version="1.22.0"; sha256="0gbcfyda6liqimd4rcjbmfcjj4zymibfm94g46xv75ahypf5rm6z"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; };
 669  NBAMSeq = derive2 { name="NBAMSeq"; version="1.14.0"; sha256="12axvrs0zbp82n4lv89299vm6v696352d0jzm398vpbkdk3jn6y2"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; };
 670  NBSplice = derive2 { name="NBSplice"; version="1.15.0"; sha256="0yn7s7igshall34cflmdwvmknv8h1zdi6vg8svvcyn9fvzlgjdm8"; depends=[BiocParallel car edgeR ggplot2 MASS reshape2]; };
 671  NCIgraph = derive2 { name="NCIgraph"; version="1.46.0"; sha256="06y04lbp1wn1w9xy3lsqcdsycp4cdlrcyhga5kn1a4skb48bc6rc"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; };
 672  NOISeq = derive2 { name="NOISeq"; version="2.42.0"; sha256="1j0yafl5r1vsn99zkhvaz2mrwv37l4p8ldgiq09d9hxpjq9ls7i2"; depends=[Biobase Matrix]; };
 673  NPARC = derive2 { name="NPARC"; version="1.10.1"; sha256="09xh883v929zabr6g1prr80885b4q0mhlvlw9mlycprrd8l2qch9"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; };
 674  NTW = derive2 { name="NTW"; version="1.48.0"; sha256="0vx5swxmw76vba5wwl1qjyyb2dm7vg9wa7jsky93knhdl0s2fli9"; depends=[mvtnorm]; };
 675  NanoMethViz = derive2 { name="NanoMethViz"; version="2.4.2"; sha256="0qfw2smqqv6pj0a34plbxgdk49zh6nbf2r077hldbmp23ml6l6qj"; depends=[AnnotationDbi assertthat BiocSingular bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 ggrastr glue limma patchwork purrr R_utils Rcpp readr rlang Rsamtools RSQLite S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; };
 676  NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.28.0"; sha256="1fjmp78q3hsnslarb7w39r3kcvf8m9jrzcw4na6k55dqp5917lys"; depends=[Biobase matrixStats Rcpp]; };
 677  NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.6.1"; sha256="1frx2gi1gjhy2hdwi2dgys9dxsg3mi50kylbc16iyxyp9ff1aghr"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; };
 678  NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.30.0"; sha256="1wfqrnbz2wcgxf2hz67z39zgy41m0ygf8a7gk1x22ry8y2irkipm"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; };
 679  NanoTube = derive2 { name="NanoTube"; version="1.4.0"; sha256="0gyjlj15bymib12b8j5ng66h6ixqj9w2arcd3x042djfqnx2crj9"; depends=[Biobase fgsea ggplot2 limma reshape]; };
 680  Nebulosa = derive2 { name="Nebulosa"; version="1.8.0"; sha256="1irjgvvycw1kx2nisqn7982hn843v4jncld7j712hv0kn2py3hn6"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; };
 681  NeighborNet = derive2 { name="NeighborNet"; version="1.16.0"; sha256="04yxkrc2qscx9ckday90b6hmar4zfqjdan0phmpgv622spnk16f3"; depends=[graph]; };
 682  NetActivity = derive2 { name="NetActivity"; version="1.0.0"; sha256="0jf406i34n4j3mx3x9543h5a8pngbj5hsl62kx38f387bvki6zb3"; depends=[airway DelayedArray DelayedMatrixStats DESeq2 NetActivityData SummarizedExperiment]; };
 683  NetPathMiner = derive2 { name="NetPathMiner"; version="1.34.2"; sha256="1rccjw6gvjv63w6f4ywy1x4d6iiqgv66grjgbnx3jc6qf6cacmlk"; depends=[igraph]; };
 684  NetSAM = derive2 { name="NetSAM"; version="1.38.0"; sha256="0d3b2h0d8d9zdqa1wjn3a6r55aa978gma4ajf7pgbp1p0y81smm8"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; };
 685  NeuCA = derive2 { name="NeuCA"; version="1.4.0"; sha256="0v6m022y7xb70f5z5hzsdg2rv5gdsldjd34bni8k9r8fd04d2q18"; depends=[e1071 keras limma SingleCellExperiment]; };
 686  NewWave = derive2 { name="NewWave"; version="1.8.0"; sha256="13zwn5qzh9mjhp6d72yndymwbmi4hb7s8qg6ji0nmqp53gj30lc8"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; };
 687  NoRCE = derive2 { name="NoRCE"; version="1.10.0"; sha256="0bmqgpiwm65wqr5wr6il131kllzpxc0mgx38adrncggcgxx3risg"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors stringr SummarizedExperiment tidyr zlibbioc]; };
 688  NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.16.0"; sha256="0fhm924r32sw5kjnpj9s79c6s6davb97whi2g8m62aii3c9di2zc"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; };
 689  NormqPCR = derive2 { name="NormqPCR"; version="1.44.0"; sha256="09cj78p7d11sichaxh5cgvd44i7mv8fs71j4sjianzky9y19474y"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; };
 690  NuPoP = derive2 { name="NuPoP"; version="2.6.3"; sha256="1wxr0ixgdxmsscd2l1wqzi8w5z4njfzzq9n2vvlwb5nkk0b41ky4"; depends=[]; };
 691  NxtIRFcore = derive2 { name="NxtIRFcore"; version="1.4.0"; sha256="1k923fqfjqfhlp648bs09xm1nb23gmh8n4y9jkdrdf05czyl73az"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges magrittr NxtIRFdata plotly R_utils Rcpp RcppProgress rhdf5 rtracklayer S4Vectors SummarizedExperiment zlibbioc]; };
 692  OCplus = derive2 { name="OCplus"; version="1.72.0"; sha256="0517ib36cppxwf8kpyxcrm5hnvzd2z1gpahslfr7cns1r3si0byr"; depends=[interp multtest]; };
 693  ODER = derive2 { name="ODER"; version="1.4.0"; sha256="09zvr01cgwc3rbqlbj8dr6yh4ghv1yha6ygl222458iq8vcwf6cv"; depends=[BiocFileCache BiocGenerics dasper data_table derfinder dplyr GenomeInfoDb GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyr purrr rtracklayer S4Vectors stringr tibble]; };
 694  OGRE = derive2 { name="OGRE"; version="1.2.0"; sha256="0rnrg6xwi9xgxyzzk1qkyqh4k9yzq4q6wpliwgp8myf37yb8sjcy"; depends=[AnnotationHub assertthat data_table DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges rtracklayer S4Vectors shiny shinyBS shinydashboard shinyFiles tidyr]; };
 695  OLIN = derive2 { name="OLIN"; version="1.76.0"; sha256="060d4hflnrk17vs651cfh2dazyc6avp3gjvp9w52y8jbfnnwyvqg"; depends=[limma locfit marray]; };
 696  OLINgui = derive2 { name="OLINgui"; version="1.72.0"; sha256="0rqrzaz052kggi970whqiaf6sjs66dfcys1jrmx3909fz65cz9mg"; depends=[marray OLIN tkWidgets widgetTools]; };
 697  OMICsPCA = derive2 { name="OMICsPCA"; version="1.16.0"; sha256="0kirg4xnj19igyyxzybdjl3y833zniki2s20lcg6ygsr7kmrc1g4"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; };
 698  OPWeight = derive2 { name="OPWeight"; version="1.20.0"; sha256="17lhz1sf158y5adsw9ibww6jdmrsqihm6g9nhk673wvd8i9kg3s4"; depends=[MASS qvalue tibble]; };
 699  ORFhunteR = derive2 { name="ORFhunteR"; version="1.6.0"; sha256="0220mwfpxals7p03l11banpg7i593bxmk3dqp63jfx40m7v1x6v6"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; };
 700  ORFik = derive2 { name="ORFik"; version="1.18.2"; sha256="06n09q44r34qw5dcjgd711pi4v1jpzd61v0dg1jan9cz48q3gg2d"; depends=[AnnotationDbi BiocGenerics BiocParallel biomaRt biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gridExtra httr IRanges jsonlite R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; };
 701  OSAT = derive2 { name="OSAT"; version="1.46.0"; sha256="1w86yf0bxrrfmmqknw59z2p2a0gfpnf54r139isd3irk0jhwwk50"; depends=[]; };
 702  OTUbase = derive2 { name="OTUbase"; version="1.48.0"; sha256="029f1hjvl5wzydn6k7436hhmgvhf7wgnmacf9wvar6gfj09n9n7d"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; };
 703  OUTRIDER = derive2 { name="OUTRIDER"; version="1.16.3"; sha256="0dv01xhj5dar20swvr3av6f1g26l4ic80v8vx23vw2sysrwdv14n"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; };
 704  OVESEG = derive2 { name="OVESEG"; version="1.14.0"; sha256="1lbv1p3pwggn1i75w4xkf4nfd4ff1fd9qkm65l7g7d98jinwa1wm"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; };
 705  OmaDB = derive2 { name="OmaDB"; version="2.14.0"; sha256="0hvsang8qlddd8andinl6p5ip823bg08c146p72glfa87bkf8xh6"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; };
 706  OmicCircos = derive2 { name="OmicCircos"; version="1.36.0"; sha256="0lqv04hjc2z3qnq4ijd9iym3mlbvxrhrxpaxdhs6w9dd32b8n8mh"; depends=[GenomicRanges]; };
 707  OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.14.0"; sha256="0wax0bplaibb27cvvqab3lpjb7qzy66dc5fs10mxadcbihl48fsb"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; };
 708  Omixer = derive2 { name="Omixer"; version="1.8.0"; sha256="080x94lhqml1fwvs0n8j6kvy2v2x3ij64960lhwjf8k1r8vyq4d5"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; };
 709  OmnipathR = derive2 { name="OmnipathR"; version="3.5.25"; sha256="1a0d4vf8i45h1fifswx9lhk6fk0z8sxfnav35psz9kvmxxab9698"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang rmarkdown rvest stringr tibble tidyr tidyselect withr xml2 yaml]; };
 710  OncoScore = derive2 { name="OncoScore"; version="1.26.0"; sha256="01qrlifbhfnq5liyiqa05pwjcr659v2i32ns2g6hc2crcf7nf5zz"; depends=[biomaRt]; };
 711  OncoSimulR = derive2 { name="OncoSimulR"; version="4.0.2"; sha256="0mpr15b2mxr4j1j18iylra3xvxif5yp57b5jc2cfz89bmkhn6rn2"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; };
 712  OpenStats = derive2 { name="OpenStats"; version="1.10.0"; sha256="1jr0yshp4qy1869kv2cncy77kqnb2vi3m4cdh0v79w062qxbi7p7"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; };
 713  OrderedList = derive2 { name="OrderedList"; version="1.70.0"; sha256="06vl8miwzwl2i0ik3p50fs9z65d65bd793z5kvnn80dk2zbnj6qk"; depends=[Biobase twilight]; };
 714  Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.26.0"; sha256="1hawn8pp63kal5ml0sm3h1j1wnkq02z64sliyaf6apv7vl60ja9g"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; };
 715  OrganismDbi = derive2 { name="OrganismDbi"; version="1.40.0"; sha256="11l1xqwbqs129vxd6lxdaizpp6j08spyh6799rv5wqmlymap1ykw"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; };
 716  Oscope = derive2 { name="Oscope"; version="1.28.0"; sha256="0454f9yc0jmg3mcq9264wb5v2n8n0kaf801hlvsiy1xa3baj3h29"; depends=[BiocParallel cluster EBSeq testthat]; };
 717  PAA = derive2 { name="PAA"; version="1.32.0"; sha256="1zyms2s98bhjjl8bx86yznn87k8sv7dgadpgfall279q7av3vkgb"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; };
 718  PADOG = derive2 { name="PADOG"; version="1.40.0"; sha256="1irx2cv9k0wcx4aq1liyka9badgf4f20rxis7y4jz9wd9hhakilx"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; };
 719  PAIRADISE = derive2 { name="PAIRADISE"; version="1.14.0"; sha256="1mpz4afz6mx7a696pylzlar2jspkflkp15g4kzvk1sjkmwb6k9pj"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; };
 720  PANR = derive2 { name="PANR"; version="1.44.0"; sha256="0ma44mv7v0bcdzgzg575ky8h1mdffk426r18gjcg3v5xbjjargw5"; depends=[igraph MASS pvclust RedeR]; };
 721  PAST = derive2 { name="PAST"; version="1.14.0"; sha256="0mbqw5kffv7jfz37ydfmbwgcxf7baxghsbs163fpi9qksn37d1v7"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; };
 722  PCAN = derive2 { name="PCAN"; version="1.26.0"; sha256="0ya9s06dxrwzw0d4r08h5nddklyw3qbgwffbinwy84vgipkki0cz"; depends=[BiocParallel]; };
 723  PCAtools = derive2 { name="PCAtools"; version="2.10.0"; sha256="1r32ajjmrhlwl0ylwavlfzph6m01mq3y7r87x8mbkmqw9ld1y2fd"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; };
 724  PDATK = derive2 { name="PDATK"; version="1.6.0"; sha256="1s6j4j4s5vq2zfiz0axzmxcvfypwhn6wr1f0pm6f6kfaymkpp1xb"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; };
 725  PECA = derive2 { name="PECA"; version="1.34.0"; sha256="1yp4nw6agcrcy0ib4c293hd4j2waw5x7zjn2x175n3dq02hplpvq"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; };
 726  PERFect = derive2 { name="PERFect"; version="1.12.0"; sha256="1l9p2cs8hypihrl57bsyszzk9kwlp03pl3pskhgwsn5vzjmfgymg"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; };
 727  PFP = derive2 { name="PFP"; version="1.6.0"; sha256="06fg96phldv4rlkq4zrmvkkc19r57f7c9vrq51g8p54byj58rjbp"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; };
 728  PICS = derive2 { name="PICS"; version="2.42.0"; sha256="0snl32fk5vglww4rh3nmai86kxc55qwnhvbad2gqk821xh1idl70"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; };
 729  PING = derive2 { name="PING"; version="2.42.0"; sha256="1j4jx9lr1kia7880xvv87mv72ish490sn4kirkpp4jzcz3n99bh6"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; };
 730  PLPE = derive2 { name="PLPE"; version="1.58.0"; sha256="1v30v0i3awq8vfid77hgcwxallq0swarvrsszs1jff9wq9gnr6vi"; depends=[Biobase LPE MASS]; };
 731  POMA = derive2 { name="POMA"; version="1.8.0"; sha256="0ll61s9ylymsha2mvys36hr3ximx91ldbzb4k34gmy8rxjgb2ima"; depends=[broom caret ComplexHeatmap dbscan DESeq2 dplyr ggplot2 ggrepel glasso glmnet impute limma magrittr mixOmics randomForest RankProd rmarkdown SummarizedExperiment tibble tidyr uwot vegan]; };
 732  POWSC = derive2 { name="POWSC"; version="1.6.0"; sha256="08cahszklxj42cpaklzil7q3jkmrigsqkbbklfkq74q8sa65ry3j"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; };
 733  PPInfer = derive2 { name="PPInfer"; version="1.24.2"; sha256="16nkqn6d8pakkbl3r2rvxzfjcsx5calyjcxnysy3g84lflv4lfid"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; };
 734  PREDA = derive2 { name="PREDA"; version="1.44.0"; sha256="1j2v7h7xajdlmbvi397qrn61w6zvrckql7hzzk0bhly3lcfsr5ij"; depends=[annotate Biobase lokern multtest]; };
 735  PROMISE = derive2 { name="PROMISE"; version="1.50.0"; sha256="0981l0yssnfjlxdqjv4r0a7a4gp01v1zqrpk9c19c1hpklzjzn9s"; depends=[Biobase GSEABase]; };
 736  PROPER = derive2 { name="PROPER"; version="1.30.0"; sha256="1fx832vinc5rfb52g2f62480sga3lh6hslz19v6whjadrqaxi1kv"; depends=[edgeR]; };
 737  PROPS = derive2 { name="PROPS"; version="1.20.0"; sha256="1arz8wq4k3dzsqzq39g95pyl934h3kdyqh2hahjpb2qpz0dnr1mk"; depends=[Biobase bnlearn reshape2 sva]; };
 738  PROcess = derive2 { name="PROcess"; version="1.74.0"; sha256="1vnj82yhc949hbn6crbqq6jk919b7fc43vrr4bbqls0czdajs42l"; depends=[Icens]; };
 739  PSEA = derive2 { name="PSEA"; version="1.32.0"; sha256="1rx7p8k6rwdx5lclz85h5qabkl0lvjprk6cx8xaaabg2g1i4d99y"; depends=[Biobase MASS]; };
 740  PSMatch = derive2 { name="PSMatch"; version="1.2.0"; sha256="03nkkx0chmz4ms9zkhjdjylzk4i3s1r51h955nn2qr236vi5h60p"; depends=[BiocGenerics BiocParallel igraph Matrix MsCoreUtils ProtGenerics QFeatures S4Vectors]; };
 741  PWMEnrich = derive2 { name="PWMEnrich"; version="4.34.0"; sha256="02rjdq4sbbb3w91p2k8bbbwwgb4caipbkj338lx0alc58ax0c0fh"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; };
 742  PanViz = derive2 { name="PanViz"; version="1.0.0"; sha256="19av4p7v215yb8scp6v161j1wj9ib98yxw7xkrryn7ad3j361a92"; depends=[colorspace data_table dplyr easycsv futile_logger igraph magrittr RColorBrewer rentrez rlang stringr tibble tidyr]; };
 743  PanomiR = derive2 { name="PanomiR"; version="1.2.0"; sha256="02kmlv258cvg7zqzb1wh48zxgbhpxqf3avfhlg2w0cf5kwmbxb2w"; depends=[clusterProfiler dplyr forcats GSEABase igraph limma metap org_Hs_eg_db preprocessCore RColorBrewer rlang tibble withr]; };
 744  Path2PPI = derive2 { name="Path2PPI"; version="1.28.0"; sha256="1psnkgi565gyv7jskpfjcsyvnlgarmqpa1ywzg9z6cfplfly550c"; depends=[igraph]; };
 745  PathNet = derive2 { name="PathNet"; version="1.38.0"; sha256="02371m21xh684hcrbhfdk9hg1jgcdgrnbn1h6vv7avaz6rc07iki"; depends=[]; };
 746  PathoStat = derive2 { name="PathoStat"; version="1.24.0"; sha256="17d3csjf8xxl3xq8kqyzkjlcd1xyq1wx5rln45nmancd3qsff9l4"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; };
 747  PeacoQC = derive2 { name="PeacoQC"; version="1.8.0"; sha256="06n9clc7bngw1fmbl0n25765svvc1r3n923ai50r9xpc75wygh0a"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; };
 748  PepsNMR = derive2 { name="PepsNMR"; version="1.16.0"; sha256="02i29jinawssqlb33wvj0h9w6cfcvamlyfxdynd38jmwx23l15l5"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; };
 749  PhIPData = derive2 { name="PhIPData"; version="1.6.0"; sha256="1gm1zr532vzz605sah2b2qmp95mnh68lqyp0kjb8l4qjz06vgawd"; depends=[BiocFileCache BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; };
 750  PharmacoGx = derive2 { name="PharmacoGx"; version="3.2.0"; sha256="1wd6s9qsfhgc7krkhq26bmdgrcqz8w7nnl580hy0b0lqwnfrd86a"; depends=[Biobase BiocGenerics BiocParallel boot caTools checkmate coop CoreGx data_table downloader ggplot2 jsonlite magicaxis MultiAssayExperiment RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment]; };
 751  PhenStat = derive2 { name="PhenStat"; version="2.34.0"; sha256="1gjji1l1a39bbmq0dm533f9y10yg455zh8syz4ymp21ipshmh8x9"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; };
 752  PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.6.0"; sha256="0y6nay90b50b0cgg532vqk4cfdgvhcw4ianqxh3l4y8gz85136dz"; depends=[doParallel dplyr foreach igraph Matrix]; };
 753  PhosR = derive2 { name="PhosR"; version="1.8.0"; sha256="1g8ia2f1di5qd7rkgirgpzwmhxx1j2pmid8cqqpb3gmqv39dj5r7"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; };
 754  PhyloProfile = derive2 { name="PhyloProfile"; version="1.12.6"; sha256="0a1axjplnaf8jqpzdryn4qr6p9gj2vcm20bxnbwcmmiphh37kv5z"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyFiles shinyjs xml2 yaml zoo]; };
 755  Pi = derive2 { name="Pi"; version="2.10.0"; sha256="09rv07k7sj6l5h00wm5z7hsq1nr084i4xdpy6sgc1kb7hksihcs0"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; };
 756  Pigengene = derive2 { name="Pigengene"; version="1.24.0"; sha256="0djknlcwhwfswi3wvy9zmi11ldv97zfq2p5rh5xv3ma4zfhrbh9d"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI DOSE dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; };
 757  PloGO2 = derive2 { name="PloGO2"; version="1.10.0"; sha256="0sq2x68bcslzldrh367hh9r1vrnk56mkc6iqiq3zy7rzgxhjigpl"; depends=[GO_db GOstats httr lattice openxlsx xtable]; };
 758  PoDCall = derive2 { name="PoDCall"; version="1.6.0"; sha256="1x368wc96nn4k17kbbwavriqfp6qywxivdas6sp069c053xkjxrq"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; };
 759  PoTRA = derive2 { name="PoTRA"; version="1.13.0"; sha256="1a32d1wndb24pxza3h53yddj9z2clff5srny2k00pbbfq1h99mjf"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; };
 760  PrInCE = derive2 { name="PrInCE"; version="1.14.0"; sha256="07q3x6rx3raz187akwfdd01x57hxbf6njbrydnl9r6a8q0b0gb0b"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase tester tidyr]; };
 761  Prostar = derive2 { name="Prostar"; version="1.30.7"; sha256="10lzh7gib43f8l2a9p2bnvyf23llzm1931kpna1vpf6p1hswsxzv"; depends=[DAPAR DAPARdata data_table future ggplot2 gplots highcharter htmlwidgets later promises rhandsontable shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes tibble vioplot webshot]; };
 762  ProtGenerics = derive2 { name="ProtGenerics"; version="1.30.0"; sha256="1k5pg0zbhz9mjsl5i3j33p7qv2adax2lf7yqv6qz229fxxaxs5li"; depends=[]; };
 763  ProteoDisco = derive2 { name="ProteoDisco"; version="1.4.0"; sha256="0df39hwg5kmc900b57dxw76mz11a7h4nb9kq1z1wl6ampx27w0ks"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; };
 764  ProteoMM = derive2 { name="ProteoMM"; version="1.16.0"; sha256="00hivafxnk9kcji6k4r0ajrdlnlmpmaij6jqiaj9ghfcdqza2fjz"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; };
 765  PureCN = derive2 { name="PureCN"; version="2.4.0"; sha256="0x69n8v5fadx3my9s68j9wadicd8q07gmh40drrcd99n8xfrp41b"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; };
 766  Pviz = derive2 { name="Pviz"; version="1.32.0"; sha256="12j3piy8c0d3vd6kqn0i65g96xj8x8p5px4rprw2mw9jnaydavwj"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; };
 767  QDNAseq = derive2 { name="QDNAseq"; version="1.34.0"; sha256="1qv3vmc6i7r35pqhi45hmvg8h7v3bl82lv7yifs59k250zsdls59"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; };
 768  QFeatures = derive2 { name="QFeatures"; version="1.8.0"; sha256="00f2j2kmvap9h7xxayy83g91zm41jd52vi9iyxhfk1lvmzpipa7h"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; };
 769  QSutils = derive2 { name="QSutils"; version="1.16.0"; sha256="09zfjc1m8h7v18mccp3krk732ls3z64q21179r0dy4snb0xighln"; depends=[ape BiocGenerics Biostrings psych]; };
 770  QUBIC = derive2 { name="QUBIC"; version="1.26.0"; sha256="0cq98y7gl1ifx45j0ilwf70h873hwfdv3y4n2yxalk1rqbvwg5dg"; depends=[biclust Matrix Rcpp RcppArmadillo]; };
 771  Qtlizer = derive2 { name="Qtlizer"; version="1.12.0"; sha256="1mqf7cbm9x0jvz52cmks6kyv8i3ccc80m5pn7z4mrmip782ddjav"; depends=[curl GenomicRanges httr stringi]; };
 772  QuartPAC = derive2 { name="QuartPAC"; version="1.30.0"; sha256="19r8h639iyc32p2yxz2j89igwl2286jv08hw5a05k4532qdkygj5"; depends=[data_table GraphPAC iPAC SpacePAC]; };
 773  QuasR = derive2 { name="QuasR"; version="1.38.0"; sha256="1pp94368aj5wx0zcnbbm6zrxrfhixmbcdzpj2lka3blvq5j7sncj"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; };
 774  QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.32.0"; sha256="1ij17xccnz4m9wvvrwql4ha790qj0x155286rkr9ybwww0ipr20i"; depends=[dplyr Rcpp yaml]; };
 775  R3CPET = derive2 { name="R3CPET"; version="1.30.0"; sha256="0xhb514qnxswsv58ycsfibi4yxbwfpxn6yp5mv891y7sdb6hkniz"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; };
 776  R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.48.0"; sha256="1xx4ssqw5x9y87hmb9h2xkqyvxl41nqfkarwzdlgfd3sqni808s9"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; };
 777  R4RNA = derive2 { name="R4RNA"; version="1.26.0"; sha256="13zscbrarxma3p49yfgvpj4rrycra4cnnlcxw8032g4y5v75jzpd"; depends=[Biostrings]; };
 778  RAREsim = derive2 { name="RAREsim"; version="1.2.0"; sha256="1r4am6k9q922wxxjdq84lbhvxql6padrgh811s73r99lfsxwfxg9"; depends=[nloptr]; };
 779  RBGL = derive2 { name="RBGL"; version="1.74.0"; sha256="0dccxsynfnhjzjk22hr5kg068zbg33g6kyhlhlhqh78582181j9m"; depends=[BH graph]; };
 780  RBM = derive2 { name="RBM"; version="1.30.0"; sha256="01842vqv2zl3n5y3xhzr07kclm5rhjv3i0cb315kzssbvrvgsfp2"; depends=[limma marray]; };
 781  RBioinf = derive2 { name="RBioinf"; version="1.58.0"; sha256="11sfsbbkz482m8jiz21czmhp2ha06ii9h1b6ww8gaka9y0pm8pgc"; depends=[graph]; };
 782  RCAS = derive2 { name="RCAS"; version="1.24.0"; sha256="0wja7m3b3zr0m8nwcq5m5appsr09jdwkvvvxzh2r5mhksn0abs6p"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; };
 783  RCASPAR = derive2 { name="RCASPAR"; version="1.44.0"; sha256="0v233p8lfgscqsi9d5sszbqhihqd44gs1rnvf8g8nh3090rc8asn"; depends=[]; };
 784  RCM = derive2 { name="RCM"; version="1.14.0"; sha256="1iaxkj8cm0f7vx2ypicls016kwfkqvarr3xway0n3brvzirmcv9m"; depends=[alabama DBI edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; };
 785  RCSL = derive2 { name="RCSL"; version="1.6.0"; sha256="0j2kcdkjpdlqg1ix0v2yq75w7phmhlrzzbaj3zwrljwzdr70wvh1"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; };
 786  RCX = derive2 { name="RCX"; version="1.2.2"; sha256="05fh6idwiiwqxf3xc5daci68ry6zb5dr1i9xi4v2s1q4srp0qkn0"; depends=[igraph jsonlite plyr]; };
 787  RCy3 = derive2 { name="RCy3"; version="2.18.0"; sha256="09rikpi8bkh3p7vpwip865vyw9gdr1n28y5azid6ja1wav315s3n"; depends=[base64enc base64url BiocGenerics fs glue gplots graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; };
 788  RCyjs = derive2 { name="RCyjs"; version="2.20.0"; sha256="0bkjyzphxn62hfmz2hpk9lbxikgv0gp56smss79abi3yx0841dpg"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; };
 789  RDRToolbox = derive2 { name="RDRToolbox"; version="1.48.0"; sha256="1i9ma3pi9b425jrgv0pry03id9dc3k0yjr7spfnvbz4xz8ifgllm"; depends=[MASS rgl]; };
 790  REBET = derive2 { name="REBET"; version="1.16.0"; sha256="18a201k2zdin3k5g5vpwlq8n6z2h6z7849zcz8rf3yzlfmbs2mx1"; depends=[ASSET]; };
 791  REDseq = derive2 { name="REDseq"; version="1.44.0"; sha256="13r04w1alpjs11kfm6cfqa4rf54z6yhhn8q754jxn8v2ivp7cwgy"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; };
 792  REMP = derive2 { name="REMP"; version="1.22.0"; sha256="1rqkvm1s7wb2cbkr8c8dxb8qaydspz83q03xdfgc656jd7431i70"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; };
 793  RESOLVE = derive2 { name="RESOLVE"; version="1.0.0"; sha256="1r91nmzw7ll22qxazaagxi0zv8l5kh6rf54alfy9nqx5w10ni78y"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 cluster data_table GenomeInfoDb GenomicRanges ggplot2 glmnet gridExtra IRanges lsa NMF nnls reshape2]; };
 794  RGMQL = derive2 { name="RGMQL"; version="1.18.0"; sha256="1yl0rpah721z0h8r5bsqhrj4nmyqn23sfn3zld59wc9pn8azsqsv"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; };
 795  RGSEA = derive2 { name="RGSEA"; version="1.32.0"; sha256="1psrm5qd7kk1h01rb73mf0zi159lpd59awfhslkxaq8b1ifck7ny"; depends=[BiocGenerics]; };
 796  RGraph2js = derive2 { name="RGraph2js"; version="1.26.0"; sha256="0yvjp8hzbiivmkb2bbwkgznmkgwxr31sr76hjh25cqgfwgj0rrzr"; depends=[digest graph rjson whisker]; };
 797  RIPAT = derive2 { name="RIPAT"; version="1.8.0"; sha256="0z0g9k09g4g0i2h0lq2f651q0336q6x3rzli6xh7a4pj4gqcbnsw"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; };
 798  RITAN = derive2 { name="RITAN"; version="1.22.0"; sha256="0ha5qn1l4518ks8bghsb4lmj1ch3ak4gwq8m29xq5wcyg932np7m"; depends=[AnnotationFilter BgeeDB dynamicTreeCut EnsDb_Hsapiens_v86 ensembldb GenomicFeatures ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; };
 799  RIVER = derive2 { name="RIVER"; version="1.22.0"; sha256="0ycb97npqrhavm6i8idhdaah3h4i7m73zmqnlki2spg49j6qkh1p"; depends=[Biobase ggplot2 glmnet pROC]; };
 800  RImmPort = derive2 { name="RImmPort"; version="1.26.0"; sha256="0hwwkdzzh118vw4k3pxxmd7yzxdbjwp5z0vzss1pvmkgidf4sy94"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; };
 801  RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.22.0"; sha256="13k01nclhl82kjyh16r5g2xx6f6inp5m7fkkd45pvahalx1cq0lm"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; };
 802  RLMM = derive2 { name="RLMM"; version="1.60.0"; sha256="1kqxvrjfqf0l98nlj5fx36gh3n5gnxsks0gxpg9b5civjnmaxilv"; depends=[MASS]; };
 803  RLSeq = derive2 { name="RLSeq"; version="1.4.1"; sha256="12dbvvh7vg9bzyj64jans0p165lz2ca26d9ilg3nka4qii37q23m"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR RLHub rtracklayer valr VennDiagram]; };
 804  RLassoCox = derive2 { name="RLassoCox"; version="1.6.0"; sha256="0hh84631r6rm5sxpp40v8blrf142rlm4sfyww933yw9khvyxvbnc"; depends=[glmnet igraph Matrix survival]; };
 805  RMassBank = derive2 { name="RMassBank"; version="3.8.0"; sha256="1zlv2vyarj0przwdn39iybk9fkghqbiic5y24i603jzajv9hqxz0"; depends=[assertthat Biobase ChemmineOB ChemmineR data_table digest enviPat httr logger MSnbase mzR R_utils rcdk Rcpp RCurl readJDX rjson S4Vectors webchem XML yaml]; };
 806  RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.10.0"; sha256="0zj6ham16bjycdh1qids0pfq6xdbp8y1hdjm966ba6cwl9xxwl5d"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; };
 807  RNASeqPower = derive2 { name="RNASeqPower"; version="1.38.0"; sha256="1f8jiljxacqjj0vf2v01fclhl3i0w7xddxcs6ajxzlmmpqs19b8a"; depends=[]; };
 808  RNASeqR = derive2 { name="RNASeqR"; version="1.16.0"; sha256="0m7d3mm644n81630v2m6vv7798x3rjshb9jcp63xq631j1wmk63i"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; };
 809  RNAdecay = derive2 { name="RNAdecay"; version="1.18.0"; sha256="1zf5gg25lyn4z8yq8mmysxzpm7jkpspawyv7siwzb0m80h59rpiy"; depends=[ggplot2 gplots nloptr scales TMB]; };
 810  RNAinteract = derive2 { name="RNAinteract"; version="1.46.0"; sha256="18yhkkwq4gvwvph8pz53cl7id644vv1n2d3jngwrfk918jay5d0s"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; };
 811  RNAmodR = derive2 { name="RNAmodR"; version="1.12.0"; sha256="0xhz2fz0lw2yw14cw8fcnghk9y9q0v75b4bkf7bg5v0jrcgg6bc4"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; };
 812  RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.12.0"; sha256="1ckd5n79psinpvw45ysnkw8n3r8g0njbd9f1a555dwl29vb7ay83"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; };
 813  RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.12.0"; sha256="08nkscr9164gpdyp3g3ypm7l7gn5lj034nj7hwmgjp4qihsnfliy"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; };
 814  RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.12.0"; sha256="14zkhq86sz7sj9nacfcsqb9g5w3nx9318aaqfqhkckk17nvrzhcg"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; };
 815  RNAsense = derive2 { name="RNAsense"; version="1.12.0"; sha256="130hbqhsvqm0sb39051b7s2asmvxv3pij0a5d03g7v828cbc96fh"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; };
 816  ROC = derive2 { name="ROC"; version="1.74.0"; sha256="00pw6xmxjzprbx8wskq6gbyqkfak764vic5yxrzs6wpram352vmv"; depends=[knitr]; };
 817  ROCpAI = derive2 { name="ROCpAI"; version="1.10.0"; sha256="0inil870ingad37gv6bc0hakizwb7lpg8s9disz888314f3xqmwz"; depends=[boot fission knitr SummarizedExperiment]; };
 818  ROSeq = derive2 { name="ROSeq"; version="1.10.0"; sha256="09jx7m25y7c0ihsv9a6cj002395kg3whrvzphgwbcipwdly1ag8f"; depends=[edgeR limma pbmcapply]; };
 819  ROTS = derive2 { name="ROTS"; version="1.26.0"; sha256="1wirblji4ckiwrvnh14cfwc9cjypazbaqr00ka5ndyz39cc31shn"; depends=[Biobase Rcpp]; };
 820  ROntoTools = derive2 { name="ROntoTools"; version="2.26.0"; sha256="0x0icx2r3vdn2a3615hfaqgp95p0d4cwz64231hqg1xji63b0q0s"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; };
 821  RPA = derive2 { name="RPA"; version="1.54.0"; sha256="1981822904nc6slkqs8mhcm82ys3s8l0yjcbg0n7ki7pibfyd87g"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; };
 822  RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.10.0"; sha256="07d5skr8cp0hyjbs7whw4h8scrf2w4hyn0wzj3khqdss53zmmr2m"; depends=[]; };
 823  RRHO = derive2 { name="RRHO"; version="1.38.0"; sha256="1fng44mhqxjq4xczw7hj32v09l1dl58azfd8cgc9jg1j2d5whjs6"; depends=[VennDiagram]; };
 824  RSVSim = derive2 { name="RSVSim"; version="1.38.0"; sha256="1zby1b7zic28x32m7w39lnp4cc1ksip08k5xq30wa7radlafagfn"; depends=[Biostrings GenomicRanges IRanges ShortRead]; };
 825  RSeqAn = derive2 { name="RSeqAn"; version="1.18.0"; sha256="0fjcwm3fw13yv3vdawwdbmbqws3n47f5s10rcvllm3wrbb1zrwb6"; depends=[Rcpp]; };
 826  RTCA = derive2 { name="RTCA"; version="1.50.0"; sha256="1jd5rknlbhdi650xg1isqxmgvi797c4jimn53x4nzaq88b8rabsc"; depends=[Biobase gtools RColorBrewer]; };
 827  RTCGA = derive2 { name="RTCGA"; version="1.28.0"; sha256="1h7x1hb7lnjaq842k72l76j7l4d9130vfh8flvsjvzyc3l98cywq"; depends=[assertthat data_table dplyr ggplot2 ggthemes htmltools knitr purrr RCurl rmarkdown rvest scales stringi survival survminer viridis XML xml2]; };
 828  RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.28.4"; sha256="14pw75cy4y5s6y2szdy8hwf8q1cysxiln6z45yn5lgdha96c6zdp"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr limma RaggedExperiment RCircos RCurl RJSONIO rvest S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; };
 829  RTN = derive2 { name="RTN"; version="2.22.1"; sha256="0ga96f1qmbq5a8nxb94b60ml2fwynnz590xjbzcx1g5vhrblkj42"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; };
 830  RTNduals = derive2 { name="RTNduals"; version="1.22.0"; sha256="0m3h0rkix48pr4jywvm0h1pbqlv62gdzq3safwgqpgb7m0pg6d08"; depends=[RTN]; };
 831  RTNsurvival = derive2 { name="RTNsurvival"; version="1.22.0"; sha256="00naywzamklldsvipyg3q2c16s84y8cw1bngdw2l1d8yra4qpq9r"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; };
 832  RTopper = derive2 { name="RTopper"; version="1.44.1"; sha256="0g31606wsd8z2rpriad2fk9v8n27vp6gyk02nmq46s9c0jpf3s7p"; depends=[Biobase limma multtest]; };
 833  RUVSeq = derive2 { name="RUVSeq"; version="1.32.0"; sha256="1qb4k7pm8w86d2p9q2r4n63iyi34wdib5x9rsjx4vhcxrnzyyygm"; depends=[Biobase EDASeq edgeR MASS]; };
 834  RUVcorr = derive2 { name="RUVcorr"; version="1.30.0"; sha256="1g4krs3d7sr56chapaxxkr4bxyays8lv6kkdds8b3q89acwzq66l"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; };
 835  RUVnormalize = derive2 { name="RUVnormalize"; version="1.32.0"; sha256="0cn38bdc72qw5g9qwwpaql72684501nrk562xpvymw5nkgw28v6i"; depends=[Biobase RUVnormalizeData]; };
 836  RVS = derive2 { name="RVS"; version="1.20.0"; sha256="0cm8j9j1s77lklgadgbb1i774l2b2s62dsjg8y1i1w4mnb9a1sn9"; depends=[GENLIB gRain kinship2 snpStats]; };
 837  RadioGx = derive2 { name="RadioGx"; version="2.2.0"; sha256="1n11dkbqrlxgv6asl0qdd9d4xwbbciyh6ag5dhgkzv7fyp1kxd12"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; };
 838  RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.22.0"; sha256="0gclfng9rhw32r3z22nc3bna87z45jq83y5czd3865g6lwvpp04l"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; };
 839  RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.18.0"; sha256="0s13jgk4si3a2bnqavk2n420kh3iggap7kbrjfawadnjdj2ic34c"; depends=[dnet igraph Matrix]; };
 840  RankProd = derive2 { name="RankProd"; version="3.24.0"; sha256="1dyjm4wwjq8aqx7sbr4jqxjw1d55w2jzdl6f8cxslc63q2sjnpa3"; depends=[gmp Rmpfr]; };
 841  RareVariantVis = derive2 { name="RareVariantVis"; version="2.26.0"; sha256="1bkww57sv3jim07cawhfkm856p3ylyv0a89k7mr3lrnxfgxgnll9"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; };
 842  RbcBook1 = derive2 { name="RbcBook1"; version="1.66.0"; sha256="06ddf30kpdmv7zs4n4q0jnnk0fsp0vb5263haw9bky45v56v4ghl"; depends=[Biobase graph rpart]; };
 843  Rbec = derive2 { name="Rbec"; version="1.6.0"; sha256="1n6cl79lvd4h249mvm6bzgcdgdpnw2683imlqxi74wd5aviw5shw"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; };
 844  Rbowtie = derive2 { name="Rbowtie"; version="1.38.0"; sha256="1kbpqhidj2bwhp9gxqx2qjaby6fc2dfrnnyjkciswgxckis6h2pc"; depends=[]; };
 845  Rbowtie2 = derive2 { name="Rbowtie2"; version="2.4.2"; sha256="0cbm6q4v9ddyx4gnw2p47ssyhnmjfxahvzbzwjzn0my3ixssy0aj"; depends=[magrittr Rsamtools]; };
 846  Rbwa = derive2 { name="Rbwa"; version="1.2.0"; sha256="0s6a4miawnsicysq9g8k0c5aycrq5bnx8pq07hsd86pbbmw57nhx"; depends=[]; };
 847  Rcade = derive2 { name="Rcade"; version="1.39.1"; sha256="05cli4h96xcsf6xas9z5ma8bzh10grlwkfgmz4a115ykblwyaj4r"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; };
 848  RcisTarget = derive2 { name="RcisTarget"; version="1.18.2"; sha256="02lz2m2zhwy1dvmjvlss6qg0dh574qhnvn7al3wx7ck1hkz0dgi2"; depends=[arrow AUCell BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges GSEABase R_utils S4Vectors SummarizedExperiment tibble]; };
 849  Rcpi = derive2 { name="Rcpi"; version="1.34.0"; sha256="0y64c3z7g8vsziphq39wypcncd3alvakd3ndwv7fgijpxf1rq4hf"; depends=[Biostrings doParallel foreach GOSemSim rcdk RCurl rjson]; };
 850  Rcwl = derive2 { name="Rcwl"; version="1.14.0"; sha256="17g2k748n4p7v7xvw5lrl5sw31w363hiqj8iaq6mclil7pyi90d7"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; };
 851  RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.14.0"; sha256="0b5v4x4v0ygkbfc8f8310bw2q8zsmqf9f8f2rynqmd5r7r5c8518"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; };
 852  Rdisop = derive2 { name="Rdisop"; version="1.58.0"; sha256="0109isvqjf18y5nryw98kvc4m5jq63jvlxlvdm7sqqikcq6irraj"; depends=[Rcpp]; };
 853  ReQON = derive2 { name="ReQON"; version="1.44.0"; sha256="1r4dzwnqv6a4zy5q9l3axqq23sbk9pjfb2y3fmwxjvdwq6c1qnp0"; depends=[rJava Rsamtools seqbias]; };
 854  ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.6.0"; sha256="0dwzamd82n598bj80cjp49mzjdfwrf4ajkb42fcp67j1w6zh6g73"; depends=[data_table doParallel foreach httr jsonlite magick]; };
 855  ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.12.0"; sha256="09sd33dji4bz6ym9hf1gpiamqm0cz45120p2k9rq70pwvra1ipcn"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; };
 856  ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.6.0"; sha256="0by0k2gj48y3ng0ckn46g2nfxn4jkh6qdd49w07bqvx8bmap1k3m"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; };
 857  ReactomePA = derive2 { name="ReactomePA"; version="1.42.0"; sha256="06994hk9nrzlgz8sby61656rdbf1r954v71djl1i7141dgw5rif2"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite gson igraph reactome_db]; };
 858  ReadqPCR = derive2 { name="ReadqPCR"; version="1.44.0"; sha256="1ss2mz31v2hps9hs34iz6cswynizw2qy64jzy72fgk4zi7a37wkv"; depends=[Biobase]; };
 859  RedeR = derive2 { name="RedeR"; version="2.2.1"; sha256="16daz3m82r7sawpzv387jxi4xyam9h5dfrklzp4n52qb5v67n8aq"; depends=[igraph]; };
 860  RedisParam = derive2 { name="RedisParam"; version="1.0.0"; sha256="0jlkgkgfi7y5mmsqphp18qg1vnmrryq6xl6hdmafnh1skpn01mzn"; depends=[BiocParallel futile_logger redux withr]; };
 861  RefPlus = derive2 { name="RefPlus"; version="1.68.0"; sha256="1gi3z78g5z85sawqc4g056m8wgnbddyc0x9pdr0kjxr80kmm8jm3"; depends=[affy affyPLM Biobase preprocessCore]; };
 862  RegEnrich = derive2 { name="RegEnrich"; version="1.8.0"; sha256="0pjscj7zsd7kcmv23pndwasy4nf80ji8ynprl1xv1gxy0wbazxd4"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; };
 863  RepViz = derive2 { name="RepViz"; version="1.14.0"; sha256="0pbnca9srv6r5h5bin80xx95b9vx25y2kgfznydl6h6dp8vrxjdm"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; };
 864  Repitools = derive2 { name="Repitools"; version="1.44.0"; sha256="148m0pnp40bc8hnq72gxivyhylnzjwh5bwpsv6yvjjc5d9b4h003"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; };
 865  ReportingTools = derive2 { name="ReportingTools"; version="2.38.0"; sha256="1nrgnb002qv0yzmrvg59i9b5wzxda0fdkrmdi6vr15g0g7j3yry0"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; };
 866  ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.8.0"; sha256="0zqifr1zhsfhrkjlp0ajqiqc9f96yz8zr13yhl19lvw30pwg9rj9"; depends=[DelayedArray Matrix S4Vectors]; };
 867  Rfastp = derive2 { name="Rfastp"; version="1.8.0"; sha256="0vc03bch0j2zv468sb7prnc4ppxj45c21sgzkxx22gx019889qf2"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; };
 868  RgnTX = derive2 { name="RgnTX"; version="1.0.0"; sha256="1a70hwc1268qf0z2wyan1zgkgjc1z4fgbb8xlrbmv8nq0hblxfs7"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges regioneR S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; };
 869  Rgraphviz = derive2 { name="Rgraphviz"; version="2.42.0"; sha256="0blymdax10zzg2lpj4hgvyh9c01b1qaivrc0gx95swji37zkqnwm"; depends=[graph]; };
 870  Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.20.0"; sha256="0zxgpc2krfwqzm8c05cdlfs3dyyf5ll43ff9mw8xzj89wcmlcfx7"; depends=[]; };
 871  Rhisat2 = derive2 { name="Rhisat2"; version="1.14.0"; sha256="19dc9fadgl55icqc5xv834kigicxxr6cny83247jjbgf5zp16piv"; depends=[GenomicFeatures GenomicRanges SGSeq]; };
 872  Rhtslib = derive2 { name="Rhtslib"; version="2.0.0"; sha256="1ri76wwv44hgxji2bmlqi6v8gbvhr72q0d6nlgpfgfwb9sgvz62h"; depends=[zlibbioc]; };
 873  RiboCrypt = derive2 { name="RiboCrypt"; version="1.4.0"; sha256="0656cgcb5k2ky3850pf7il61dr5nb3i2cdk93x3xllcacp64h4mm"; depends=[BiocGenerics BiocParallel Biostrings data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges ORFik plotly rlang]; };
 874  RiboDiPA = derive2 { name="RiboDiPA"; version="1.6.0"; sha256="16i271hdibwv29883wxrzjhcilri4ydnyq5znl0dcqj2fbfr3y46"; depends=[BiocFileCache BiocGenerics data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; };
 875  RiboProfiling = derive2 { name="RiboProfiling"; version="1.28.0"; sha256="0wmmpcabi1ngwmvfhxkp44kj1wvzyrcckkrzpjlzcq016lr67iwn"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; };
 876  Ringo = derive2 { name="Ringo"; version="1.62.0"; sha256="0l9lpf6a2cj88hm75f8qy7h13lvwc1ldykvqkd0zxzdwx1s64gzr"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; };
 877  Risa = derive2 { name="Risa"; version="1.40.0"; sha256="1id6xgm74zj1h1kig2apg119ms8n6z9pnjfwyxlbkdzyyn040rl0"; depends=[affy Biobase biocViews Rcpp xcms]; };
 878  Rmagpie = derive2 { name="Rmagpie"; version="1.54.0"; sha256="00ys66bbj8c61dr23zj1r0gn5lkmih15b2cbcvxxllzyy9smcdpa"; depends=[Biobase e1071 kernlab pamr]; };
 879  Rmmquant = derive2 { name="Rmmquant"; version="1.16.0"; sha256="0x8s2whkg9x3r1hk973zwkaby2d616cvfzkg3qp77nqn0sip91r8"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; };
 880  RnBeads = derive2 { name="RnBeads"; version="2.16.0"; sha256="1cjzdwfjcb4wqwm5kwzyvf7f6c3glxjvhi4w9f26n1g9ifli9725"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; };
 881  RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.8.0"; sha256="0v120ckw1b4j3fm80amm7qihrrczh3s291n2snrpai34xhpfbrva"; depends=[biomaRt dplyr edgeR ggplot2 ggpubr heatmap3 KEGGREST matlab Rcpp recount RnaSeqSampleSizeData SummarizedExperiment tidyr tidyselect]; };
 882  RolDE = derive2 { name="RolDE"; version="1.2.0"; sha256="0agxqynb58ky0z0dzhz3j7c2n1yz4njwk651jjikb9z3c4k67kiv"; depends=[doParallel doRNG foreach matrixStats nlme qvalue rngtools ROTS SummarizedExperiment]; };
 883  Rqc = derive2 { name="Rqc"; version="1.32.0"; sha256="02k64pjd1dlz5sksdbkbii9z4ihf1833ws7wwj81w3757zzabx0x"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; };
 884  Rsamtools = derive2 { name="Rsamtools"; version="2.14.0"; sha256="0wd4hsn19msz0fkwfq7gvi97vlfpsbzzw3rjj4b6z7s5a83zir2z"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; };
 885  Rsubread = derive2 { name="Rsubread"; version="2.12.3"; sha256="0lhmva8yghlbb44h1fvbcqfp8zvdn4pd4nwyd2drh6b271f8qjdd"; depends=[Matrix]; };
 886  Rtpca = derive2 { name="Rtpca"; version="1.8.0"; sha256="0n2k1pqba4fnf0mpkxywd93yzv9dk37c134pna3f25mgzgd84qj3"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; };
 887  Rtreemix = derive2 { name="Rtreemix"; version="1.60.0"; sha256="0pkc4xsqqfdvszbb0xwx3hbxl1f7kcx3vm9bhjd7zkwls1jvv2n8"; depends=[Biobase graph Hmisc]; };
 888  S4Vectors = derive2 { name="S4Vectors"; version="0.36.2"; sha256="131cg5fzrqgyp4kv260yn8hpr0zv5mxjhdnpl50ydgc2k0l43d38"; depends=[BiocGenerics]; };
 889  SAIGEgds = derive2 { name="SAIGEgds"; version="1.12.5"; sha256="10cck00fc4wmj7iwzm0s5ddgm32rpw8f32fawqaigxxrb3r9yn20"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; };
 890  SANTA = derive2 { name="SANTA"; version="2.34.0"; sha256="1i99s33id75srjr0x3yfz1gdyxw6766pr9w4afs8varfq8gxyc48"; depends=[igraph Matrix]; };
 891  SBGNview = derive2 { name="SBGNview"; version="1.12.0"; sha256="0644hd9m4d1s9y000yh831pwyx7q1dzr69fjqf15bby78xkn70yn"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; };
 892  SBMLR = derive2 { name="SBMLR"; version="1.94.0"; sha256="1x7p27abv9yc9mxbnprlwh5ph50jkycmlb90qib0mj361g4sr72d"; depends=[deSolve XML]; };
 893  SC3 = derive2 { name="SC3"; version="1.26.2"; sha256="0ds45m55qmq6d837ifpwmxvzij73xgkzhw1m63yv2s33rk1m6gka"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; };
 894  SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.40.0"; sha256="1hrfwkn1gd1r2clk09a2i4sqc92bmw1c7h5ddrdnlcpgfdlsdnxp"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; };
 895  SCANVIS = derive2 { name="SCANVIS"; version="1.12.0"; sha256="0hs065lsfwjdz8b6kic1gjpak8xd5p08k957f9zsz32shp0gp976"; depends=[IRanges plotrix RCurl rtracklayer]; };
 896  SCATE = derive2 { name="SCATE"; version="1.8.0"; sha256="1zxliw0q979jps5lrmwks5m39qjd827jbvax1ndkd8p6lp1pcm2h"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; };
 897  SCArray = derive2 { name="SCArray"; version="1.6.0"; sha256="0crh2ddh87j5qbxnslr1f94nsf24rzqz61ng6v3g8zpsldkrw09b"; depends=[BiocGenerics DelayedArray DelayedMatrixStats gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; };
 898  SCBN = derive2 { name="SCBN"; version="1.16.0"; sha256="1lan5anf451dmb19sra79d4w2qi9kk7xw3zijswlbhfnd4fv9kgz"; depends=[]; };
 899  SCFA = derive2 { name="SCFA"; version="1.8.1"; sha256="1839mh15wxn07nh2zx7ahs2nimgxczpvn11dcr113zimxibm1r5z"; depends=[BiocParallel cluster coro glmnet igraph Matrix matrixStats psych RhpcBLASctl survival torch]; };
 900  SCOPE = derive2 { name="SCOPE"; version="1.10.0"; sha256="1z9v27l8bs7gkbgp1kd1q9nyq77x46anc0x0c1as0m04qq7c5xbj"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; };
 901  SCnorm = derive2 { name="SCnorm"; version="1.20.0"; sha256="0zv4pf650crwliby34cjv7kxkrbqhc7xvz15n39hz5d0fk7ablgd"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; };
 902  SDAMS = derive2 { name="SDAMS"; version="1.18.0"; sha256="0i9i9w24qb66rbvkpjn2fin8x0mxd7g767i4ly0s75v9kbbp3ca6"; depends=[qvalue SummarizedExperiment trust]; };
 903  SELEX = derive2 { name="SELEX"; version="1.30.0"; sha256="0b5dcx9djh9d0zi12bnzq81jjzcqam1i59a05d3p917gf0n058ms"; depends=[Biostrings rJava]; };
 904  SEPIRA = derive2 { name="SEPIRA"; version="1.18.0"; sha256="1vm4zy6a0hff6j6ysbnrxa51irc4mh98rxs2f253f50rwsbasxlv"; depends=[corpcor limma]; };
 905  SEtools = derive2 { name="SEtools"; version="1.12.0"; sha256="0q47pw3yvk13ld9zwpc6lihf9y4z2dq81y81zyz5b8mxnlkhwixa"; depends=[BiocParallel circlize data_table DESeq2 edgeR Matrix openxlsx pheatmap S4Vectors sechm SummarizedExperiment sva]; };
 906  SGSeq = derive2 { name="SGSeq"; version="1.32.0"; sha256="03ddz0mpgqqb52r7wa46bcr1ybf40126pg0n0n0pv6fnbq0ifwyc"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; };
 907  SIAMCAT = derive2 { name="SIAMCAT"; version="2.2.0"; sha256="1fx355rwaqg057f6qyynmnhqvf74c818irfaii6y3s46g455nvwk"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo lgr LiblineaR lmerTest matrixStats mlr3 mlr3learners mlr3tuning paradox phyloseq pROC progress PRROC RColorBrewer scales stringr]; };
 908  SICtools = derive2 { name="SICtools"; version="1.28.0"; sha256="1zjwph09shvjzzhsnh8mfzqypj2s66r6irq1bms2zw1mqpjcb2fx"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; };
 909  SIM = derive2 { name="SIM"; version="1.68.0"; sha256="0vrz9cmzjy20h02gsi79svrh9ffrxkkzbnfa0azcgycz6h5ywggs"; depends=[globaltest quantreg quantsmooth]; };
 910  SIMAT = derive2 { name="SIMAT"; version="1.30.0"; sha256="1zwmwblzr9r66a5d9xrjb43id9fl5m4fbzgn04yx9bmvxywa4xfw"; depends=[ggplot2 mzR Rcpp reshape2]; };
 911  SIMD = derive2 { name="SIMD"; version="1.16.0"; sha256="18wwn76kd826jgqqdrdmsjq5m6mfn3kp3w2h2p5qwb4w5zqdw2ir"; depends=[edgeR methylMnM statmod]; };
 912  SIMLR = derive2 { name="SIMLR"; version="1.24.3"; sha256="1z49a3asx00lmxhd4rnr2bwcc1wmx6l06rx54gk70cc5f5r3m3ix"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; };
 913  SISPA = derive2 { name="SISPA"; version="1.28.0"; sha256="08ks8nlc200yz8r3qr45g03k4bpi4dfvdd7sin1yadazfil1s6kr"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; };
 914  SLqPCR = derive2 { name="SLqPCR"; version="1.64.0"; sha256="0s3gs5q5h4vrjaqwdr6gjfsl1pj286sim2cx9abvjj9hpcjk08vx"; depends=[]; };
 915  SMAD = derive2 { name="SMAD"; version="1.14.1"; sha256="1scmpagh86s9f8qsa89vi8l221asbygpv4mkg7bsv5943aqbknpm"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; };
 916  SMAP = derive2 { name="SMAP"; version="1.62.0"; sha256="152lrwn5rr9vlkgj22sgzg0winnhzvvlg6nvzd717bjngjjfj8nq"; depends=[]; };
 917  SMITE = derive2 { name="SMITE"; version="1.26.0"; sha256="0jkxchbwjjid2r8z1dipjp6rzmj0qs9afrvd4jamvx1gg9xwr6b3"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; };
 918  SNAGEE = derive2 { name="SNAGEE"; version="1.38.0"; sha256="1hbcibv4yhk7hw4w41nq85szk41vrfyfv7cv4qzn0xhv3cacivj1"; depends=[SNAGEEdata]; };
 919  SNPRelate = derive2 { name="SNPRelate"; version="1.32.2"; sha256="1ib0va8n19ygi52qgx2fgdswqdgpfgcd89wcp4rsq10w87nxvalx"; depends=[gdsfmt]; };
 920  SNPediaR = derive2 { name="SNPediaR"; version="1.24.0"; sha256="1afz3d8vbldd5q38nsqwblap4rgxhjqq6yixh5vgk0qbcmhhhb8g"; depends=[jsonlite RCurl]; };
 921  SNPhood = derive2 { name="SNPhood"; version="1.28.0"; sha256="0kn0ini79lp2c3mav1hf54jg3lw2ggdbi03nrxxp9iinzs83q9d2"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; };
 922  SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.6.0"; sha256="04lkkhq3im7cyi0ibm8i53092hjlwaz0v32chp487pwdpz87c650"; depends=[Matrix mgcv VGAM]; };
 923  SPEM = derive2 { name="SPEM"; version="1.38.0"; sha256="1763qcs36vsvbd7rv3s40lgq6yq7b2dcjadgcqmh081hc4zz63cb"; depends=[Biobase Rsolnp]; };
 924  SPIA = derive2 { name="SPIA"; version="2.50.0"; sha256="1zrjjlji7whpvgpznslswxs6nj29n40x02z0v62j1x7r0y4rkn7b"; depends=[KEGGgraph]; };
 925  SPIAT = derive2 { name="SPIAT"; version="1.0.4"; sha256="0naxd1s30cbv1lc65agl8lqrzdp5yhwjbh038wd47z6yrxxn4ds5"; depends=[alphahull apcluster ComplexHeatmap dbscan dittoSeq dplyr elsa ggplot2 gridExtra gtools mmand plotly pracma RANN raster reshape2 rlang Rtsne sp SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tibble umap vroom]; };
 926  SPLINTER = derive2 { name="SPLINTER"; version="1.24.0"; sha256="01rq0x3v5byqwj0mlxv207hkf2zhadyq28qnr49mx25xanb714ah"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; };
 927  SPONGE = derive2 { name="SPONGE"; version="1.20.0"; sha256="0wlm7xbnz50avlyx0gpxqbwsascwg777sc39h01a3qxbfz91ia4w"; depends=[Biobase biomaRt caret ComplexHeatmap cvms data_table doRNG dplyr expm foreach ggplot2 ggpubr ggridges glmnet gRbase igraph iterators logging MASS MetBrewer miRBaseConverter ppcor randomForest rlang stringr tidyr tidyverse tnet]; };
 928  SPOTlight = derive2 { name="SPOTlight"; version="1.2.0"; sha256="03zvbhr1k4zwnzkza99295fp7j1pihjfz8gs1v0kgksj340nwfvf"; depends=[ggplot2 Matrix matrixStats NMF nnls SingleCellExperiment]; };
 929  SPsimSeq = derive2 { name="SPsimSeq"; version="1.8.0"; sha256="1rhvxqldzv7if8r8x7xnszb68r6qcbysazddbbil0drvi1dxsl0z"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; };
 930  SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.12.0"; sha256="06sppcwx5xm1z2dyqfxl9ml3wpyblvcvy0jsc4dqyw5d8np87m5d"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; };
 931  SQUADD = derive2 { name="SQUADD"; version="1.48.0"; sha256="174gbzjjvyz0m4ldr0blg82xd7r3av7frzw199ignhflyxy6brsx"; depends=[RColorBrewer]; };
 932  SRAdb = derive2 { name="SRAdb"; version="1.60.0"; sha256="1j88gk2dr2anh61acvdyqf2gvy3d1dzdssfj1fwpwppy2p0gy0xr"; depends=[GEOquery graph RCurl RSQLite]; };
 933  STAN = derive2 { name="STAN"; version="2.26.2"; sha256="0dd4hb2iabvnr6v0ys4jslj7611z1hii8hxkdvwrjbz4nn678wkv"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; };
 934  STATegRa = derive2 { name="STATegRa"; version="1.34.0"; sha256="1l9xzkd1hwiah7bwm23clwc62gs1jks9hgkympwyr5in33fy6z61"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; };
 935  STRINGdb = derive2 { name="STRINGdb"; version="2.10.1"; sha256="0qpss8fcf8ll47jv45ypsqd9jf7ajdiya7w4mw1wysk76spcwllm"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; };
 936  STROMA4 = derive2 { name="STROMA4"; version="1.22.0"; sha256="0cyyjly4wpzjyf130shcpy9q734l32wk3a3c2wymbvxxlphk9353"; depends=[Biobase BiocParallel cluster matrixStats]; };
 937  STdeconvolve = derive2 { name="STdeconvolve"; version="1.2.0"; sha256="1f5b3vnswpj6sja05g9lnx3lygzkh162kynja0xfjd0rksp4n0h5"; depends=[BiocParallel clue ggplot2 liger Matrix mgcv reshape2 scatterpie slam topicmodels viridis]; };
 938  SUITOR = derive2 { name="SUITOR"; version="1.0.0"; sha256="0ms36d1ay3w1ynrj6672yhvdv0fsvrlwx6fqrp56f5ibvmh3nchd"; depends=[BiocParallel ggplot2]; };
 939  SWATH2stats = derive2 { name="SWATH2stats"; version="1.28.0"; sha256="1mab1q9xv0pzm97lpsnvn3hhybqrmy29gcdcdxd4myf6zqg1j0a3"; depends=[biomaRt data_table ggplot2 reshape2]; };
 940  SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.52.0"; sha256="1sphi1y61abx428624nrk8srlcp405ssqzzxwrpjrd325gj5ry5q"; depends=[]; };
 941  Scale4C = derive2 { name="Scale4C"; version="1.20.0"; sha256="1fqzfq782xb378p3f8cyd2pd81iwpw5vf9ssq9349vwz1qzycm8a"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; };
 942  ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.6.0"; sha256="0lxr6z9zdrgvm06inc1d8gl2agqmbjvgs8f5ryn5x68hqlnchnl1"; depends=[DelayedArray Matrix S4Vectors]; };
 943  Sconify = derive2 { name="Sconify"; version="1.18.0"; sha256="09jhbvqrwkwp0lg8ixxja9hg88virvpj7bglcmws4z6ch98g42cy"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; };
 944  ScreenR = derive2 { name="ScreenR"; version="1.0.0"; sha256="1907v37z3lrqmlghx4kja5pfii1hbifdxka32yqqrnb5zzw4lgxz"; depends=[dplyr edgeR ggplot2 ggvenn limma magrittr patchwork purrr rlang scales stringr tibble tidyr tidyselect]; };
 945  SemDist = derive2 { name="SemDist"; version="1.32.0"; sha256="1w8jbzz5b9ggc696hbj7vy4n6j2h047raw3x9k6y3vf7b4g83nl6"; depends=[annotate AnnotationDbi GO_db]; };
 946  SeqArray = derive2 { name="SeqArray"; version="1.38.0"; sha256="12q4n2whcnp011xqlb6hfagk5d6yl24w5i68iz3j7m9cbcxwv6cn"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
 947  SeqGSEA = derive2 { name="SeqGSEA"; version="1.38.0"; sha256="1d88glq8k5bv76s3iq39s5vzzzpcg61r5rfbgw7kdcawing485fq"; depends=[Biobase biomaRt DESeq2 doParallel]; };
 948  SeqGate = derive2 { name="SeqGate"; version="1.8.0"; sha256="0j515d63xmy1p7d7f8cbg0dz5d61vznsfdw8id8cr32jz7ciz1y4"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; };
 949  SeqSQC = derive2 { name="SeqSQC"; version="1.20.0"; sha256="12czsf0nphqqrwh5iyragjmms4srjklqdzv3232p39vm5zy5p6c0"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; };
 950  SeqVarTools = derive2 { name="SeqVarTools"; version="1.36.0"; sha256="0cy85fzrbd646yc774y0v8qiccjhx7f6ysk399zgdfrkq6r458yd"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; };
 951  SharedObject = derive2 { name="SharedObject"; version="1.12.0"; sha256="11rrnm7kjm6z8j4ga88s4cafcdj83pvhnybp7ns5pn7s2ln8044d"; depends=[BH BiocGenerics Rcpp]; };
 952  ShortRead = derive2 { name="ShortRead"; version="1.56.1"; sha256="1dvnjjc6cwn9wicki3ff3w3zx7i0szj0lnfw4n6lbmipg4ia5bkb"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; };
 953  SigCheck = derive2 { name="SigCheck"; version="2.30.0"; sha256="0j8m04csgyz3ph6xp1qd5fzsqh83717366f136vgqr6y4msv6jyj"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; };
 954  SigFuge = derive2 { name="SigFuge"; version="1.36.0"; sha256="1bqj490afai01bkkxkc3pph2vix0hjvkixrndks57bwh94r9k876"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; };
 955  SigsPack = derive2 { name="SigsPack"; version="1.12.0"; sha256="0bwhpaj1wr67nhljslpvr25yz1y1zxnha2w58g8bmbxxfp8353zc"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; };
 956  SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.36.0"; sha256="12383rvcq7l2b3ik2gi741d33shrijj09gqpkbvbksj046j90swm"; depends=[Biobase limma mclust Ringo]; };
 957  SimBu = derive2 { name="SimBu"; version="1.0.2"; sha256="0w8aksmcs16d6zmczarni8vrkw5b5kmv7n495w0qhmy6ync197bx"; depends=[basilisk BiocParallel data_table dplyr ggplot2 Matrix phyloseq proxyC RColorBrewer RCurl reticulate sparseMatrixStats SummarizedExperiment tidyr]; };
 958  SimFFPE = derive2 { name="SimFFPE"; version="1.10.0"; sha256="1mlmlbnqqzxmjmir9lnqnqqb6hmj6wfxhy6wpmf6sv9y2vi2cvjz"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; };
 959  SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.20.1"; sha256="1xwa6ncmqp21a4zx1dbs9p9b9rqbxhdgq2279mj4yl0gnpyqr9d7"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; };
 960  SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.10.0"; sha256="194gnss397wv3pxh1vf8gfikbz519l8hx3w4fm2hxvjs6q8k2234"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran SIMLR stringr]; };
 961  SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.6.0"; sha256="0dqyx3w8mxhf04xczzdv49lc2jkyamv1vlbdvfj0556y54z45cgg"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; };
 962  SingleR = derive2 { name="SingleR"; version="2.0.0"; sha256="05rw6l0d4n9m1dd7dp55zfripx036x1riwy83sx3aj5mw4r1awb6"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; };
 963  SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.34.0"; sha256="0xyh4pwwbpa1bmamqdhp84qhjdc2qsxc43xgknjrrja24d06ji2j"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; };
 964  SpacePAC = derive2 { name="SpacePAC"; version="1.36.0"; sha256="0pbbqadais7lvkiz1cj1gpx35l28nb5mm53nmkif4jbd9a2p7lh5"; depends=[iPAC]; };
 965  Spaniel = derive2 { name="Spaniel"; version="1.12.0"; sha256="1sxjdcc31dl7ljbayrykjr0pq6yywxcysiiclziv62msyk9v4hfx"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; };
 966  SparseSignatures = derive2 { name="SparseSignatures"; version="2.8.0"; sha256="05zsmm8s23wms8arf2hrjx8vzklkq5py9wbqvvnp7989kb2r0bfn"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; };
 967  SpatialCPie = derive2 { name="SpatialCPie"; version="1.14.0"; sha256="07pl9wnn5b1ia71npvcfbm8virydj3fjrpr33gmk081yzvkqr52q"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; };
 968  SpatialDecon = derive2 { name="SpatialDecon"; version="1.8.0"; sha256="0an0wkblfv5bzsvlq7bz01hcc1vaj16l28yk621jpyb4bjva795z"; depends=[Biobase GeomxTools logNormReg Matrix repmis SeuratObject]; };
 969  SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.8.1"; sha256="1kdsdk6n81n83bbbk4k8wqyj441d3xjbc4hqv1rpn8ny5mjcbpqg"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; };
 970  SpatialFeatureExperiment = derive2 { name="SpatialFeatureExperiment"; version="1.0.3"; sha256="1616qpg31cnahj42s4gz435jj4j3d4rprr3bzxy58bdi7l2f8gv6"; depends=[BiocGenerics BiocParallel rjson S4Vectors sf SingleCellExperiment SpatialExperiment spdep SummarizedExperiment]; };
 971  SpeCond = derive2 { name="SpeCond"; version="1.52.0"; sha256="09f5nz799ai7y4ig6y24xnldd37qvv7yd1k258z3s9ckc76cdgd4"; depends=[Biobase fields hwriter mclust RColorBrewer]; };
 972  Spectra = derive2 { name="Spectra"; version="1.8.3"; sha256="1qib5rdyhgcs657hjnvp9zfhj05z3lpd3ngybqw3pikmc93ssf0h"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; };
 973  SpectralTAD = derive2 { name="SpectralTAD"; version="1.14.1"; sha256="1iml0by529cxhj6v82046l86affipar143ddk627b3p6a2sg35zr"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; };
 974  SpidermiR = derive2 { name="SpidermiR"; version="1.28.0"; sha256="13dbz24g7l25d26piq00cpyll4cf8ss5l1kih7nvp8lrb540h6df"; depends=[AnnotationDbi gdata httr igraph miRNAtap miRNAtap_db org_Hs_eg_db]; };
 975  SpliceWiz = derive2 { name="SpliceWiz"; version="1.0.4"; sha256="1lf9rcqplp6zzq11zvd1barcr0a99hfw0rgxlc93sg9gi8vm5xbn"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats DT fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array heatmaply IRanges magrittr matrixStats NxtIRFdata ompBAM pheatmap plotly progress R_utils RColorBrewer Rcpp RcppProgress rhandsontable rhdf5 rtracklayer S4Vectors shiny shinydashboard shinyFiles shinyWidgets SummarizedExperiment XML zlibbioc]; };
 976  SplicingFactory = derive2 { name="SplicingFactory"; version="1.6.0"; sha256="1l92i96n7pgwrrl4ywwmbpl1al5x3lamn9wrplclkh0l8yx8c033"; depends=[SummarizedExperiment]; };
 977  SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.38.0"; sha256="0bqgn2lcmf6n188mj70cczwaps97dghmsililviq9sll91dj1gn8"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; };
 978  SpotClean = derive2 { name="SpotClean"; version="1.0.1"; sha256="1sxmj1zgx7xf3f29l9qws4sf9k6v1wwh94brawqd6qq1plv79g51"; depends=[dplyr ggplot2 Matrix RColorBrewer readbitmap rhdf5 rjson rlang S4Vectors Seurat SpatialExperiment SummarizedExperiment tibble viridis]; };
 979  StarBioTrek = derive2 { name="StarBioTrek"; version="1.24.0"; sha256="02j6l2dmygwmsg1kyb3wpd9qsph5a9wim6gzaljzfa3y2gcv7sx3"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; };
 980  Statial = derive2 { name="Statial"; version="1.0.1"; sha256="1d9crknbxrdpdvmjkm0y2im3har486dlgy5k40njiff7wcm9g4ms"; depends=[BiocParallel concaveman data_table dplyr ggplot2 SingleCellExperiment spatstat_explore spatstat_geom stringr tibble tidyr tidyselect tidyverse]; };
 981  Streamer = derive2 { name="Streamer"; version="1.44.0"; sha256="14wr5q5dkc5b8hb1zkh03hk7bx51hicshwjvwvy01yxfyi1jkszq"; depends=[BiocGenerics graph RBGL]; };
 982  Structstrings = derive2 { name="Structstrings"; version="1.14.0"; sha256="0sw8jv3qhfr0r13dpyhml3xrmvf35cnqai20mk123iq160zjq74s"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; };
 983  StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.13.0"; sha256="11z3acsbaifrxkghd7i8503ki9s1lc6c22880yna6qcfprlzb44g"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; };
 984  SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.14.0"; sha256="192yj32aj012ww5yz3v5x4xplrkr5k8zp9yvmfq86hzn4jwcpdxx"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; };
 985  SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.16.0"; sha256="1q63aqxrk3s944kld2ji0ghng7yyy8a2d4bwar3wpp1plhkiirrq"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; };
 986  SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.28.0"; sha256="0897v6x1ki4m7kajnd60yv5qj6xa1293sj572b4dhcnfjvsf9rcn"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors]; };
 987  Summix = derive2 { name="Summix"; version="2.4.0"; sha256="0da94002spi4hv6a42aahdcazq66lf2nf4r6l2zg3hqxw0v6kph9"; depends=[nloptr]; };
 988  SwathXtend = derive2 { name="SwathXtend"; version="2.20.0"; sha256="0bki0cl034zlccqg59dmvr9g57fz6qm57kr28arsl2w1bwjmng8d"; depends=[e1071 lattice openxlsx VennDiagram]; };
 989  SynExtend = derive2 { name="SynExtend"; version="1.10.2"; sha256="1cbbhyqyhwdzcsphaqirm2mas8yb6mgs2pmm1x2krfypq200sji1"; depends=[Biostrings DECIPHER IRanges S4Vectors]; };
 990  SynMut = derive2 { name="SynMut"; version="1.14.0"; sha256="0dq5cy79pdi4ibkyvac315f14xxwahpyznpgzjybksr8xqsa5lsc"; depends=[BiocGenerics Biostrings seqinr stringr]; };
 991  TADCompare = derive2 { name="TADCompare"; version="1.8.0"; sha256="197cbbi7wnw0j6i8fvl051zhmjl9cgiy45pq7fcjc48vnrv5vw6y"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; };
 992  TAPseq = derive2 { name="TAPseq"; version="1.10.0"; sha256="0ilpziqzbk4qlka4dmvbkv8dr3w86hpsxm0nlakkps895z8x59sz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; };
 993  TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.10.0"; sha256="0v4xi6hbzw2x0ipg49xn41fdn6mksfnmsikg9nqvq28m55hkxxmc"; depends=[ASSIGN BiocGenerics BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; };
 994  TCC = derive2 { name="TCC"; version="1.38.0"; sha256="17kkn8xfkf7g8y51nnzsrgn8v65qlh8a4jysn03phk7pnfrmj7jl"; depends=[baySeq DESeq2 edgeR ROC]; };
 995  TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.25.3"; sha256="0daq7093yipry8pp6fj6pj8x1njxs8j6cz7875qkfmzqkbis4vql"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; };
 996  TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.23.0"; sha256="16757szccczlv1q35y1cnmlkr12s46f63z7ijffpb15q85xlaqdx"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; };
 997  TCGAutils = derive2 { name="TCGAutils"; version="1.18.0"; sha256="0vhpamn5ak3b7dr3f4a4z6f7xfsprryjw8nax4f4p3flifim9kmx"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; };
 998  TCseq = derive2 { name="TCseq"; version="1.22.6"; sha256="04x2px0l0b1z94imic5bmlh8k0634zbf6kbldx94fka7gnjcqj4r"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; };
 999  TDARACNE = derive2 { name="TDARACNE"; version="1.47.0"; sha256="19zf7x2wcfnij1nlh623kim63d6wb3p42mwsn35msds778jvcbxq"; depends=[Biobase Rgraphviz]; };
1000  TEKRABber = derive2 { name="TEKRABber"; version="1.2.0"; sha256="139lblpf5vcpr2mni4x2l5ba4dcixnzbvav8cb90586myrwxkxf3"; depends=[apeglm biomaRt DESeq2 Rcpp SCBN SummarizedExperiment]; };
1001  TENxIO = derive2 { name="TENxIO"; version="1.0.1"; sha256="1k05r5lz4hcym1fk6qr3bxdjpwqg8assac1bqyd02i9fxj6a6kcn"; depends=[BiocBaseUtils BiocGenerics BiocIO GenomeInfoDb GenomicRanges Matrix MatrixGenerics R_utils RCurl readr S4Vectors SingleCellExperiment SummarizedExperiment]; };
1002  TEQC = derive2 { name="TEQC"; version="4.20.0"; sha256="124y6kmwk1cx3k5rjr36lx1ii6fr5xllxniggd59a8k5gdrfizg2"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; };
1003  TFARM = derive2 { name="TFARM"; version="1.20.0"; sha256="189h3cc113ikk7ixwrww7ahd20l4dnsnppylphkmxp2p1zhg8ny8"; depends=[arules fields GenomicRanges gplots stringr]; };
1004  TFBSTools = derive2 { name="TFBSTools"; version="1.36.0"; sha256="05kgkwmh5mcrm0xd81rzicysgknb8wrf71y2llikvma1b9c1g789"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; };
1005  TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.18.0"; sha256="0ylcr59zxyka3yngf419gzc6jqcg5yrvwsaclvaiz8fcnw0rymmv"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; };
1006  TFHAZ = derive2 { name="TFHAZ"; version="1.20.0"; sha256="16b3m09kn6kq8fhl873dg4h00mdnazk7kz5aipqn6nl3n5pxdpb7"; depends=[GenomicRanges IRanges ORFik S4Vectors]; };
1007  TFutils = derive2 { name="TFutils"; version="1.18.0"; sha256="1spfa75rxfkss8fipyq9bfdm3p71y2kabwcgjpq97q1b5wnfqazd"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; };
1008  TIN = derive2 { name="TIN"; version="1.30.0"; sha256="01cpi05y1x9d0i97w1bifi43spa9rkblqpvdx8vvbkzhxbmzkhi8"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; };
1009  TMixClust = derive2 { name="TMixClust"; version="1.20.0"; sha256="1l06mlz9fsxn552b28japiw4h5h4wjf4jcrqbpcisbrxnnp6480i"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; };
1010  TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.14.0"; sha256="0i17bikrsh408n75msli2h291iypi2higr4gr1lf76rg98lf5l4i"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; };
1011  TOAST = derive2 { name="TOAST"; version="1.12.0"; sha256="1v9nsbgwp5476ddn3irqiq4cxnpqs49w70l3qbhkm5ydg2ym3cvs"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; };
1012  TPP = derive2 { name="TPP"; version="3.26.1"; sha256="1a67in7z9lkgv281b0d60i6d8ngbr1an8pw5czjdcfv63nlgbpz1"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; };
1013  TPP2D = derive2 { name="TPP2D"; version="1.14.0"; sha256="1hba901gfm1saqyh8yf18nn4r5s6i1bpxsync0hcsy46lwx7gbwg"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; };
1014  TREG = derive2 { name="TREG"; version="1.2.0"; sha256="1skk9hqc5kyhj2jfy0lwywc3lwf6d15mfz05j57bx9z27gjkbkj4"; depends=[Matrix purrr rafalib SummarizedExperiment]; };
1015  TRESS = derive2 { name="TRESS"; version="1.4.0"; sha256="0ybyjkcj4xpha5c0afyx7ps13kdl45v9mbgpb75j15f76dw64162"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; };
1016  TRONCO = derive2 { name="TRONCO"; version="2.30.0"; sha256="0xr3vbs239zs5fgdkka4a51vf3q35w7h811qlix9kg549vabi5ir"; depends=[bnlearn circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; };
1017  TSCAN = derive2 { name="TSCAN"; version="1.36.0"; sha256="0aqn1rxzbil9m9mpcdfc0k75s5k6ljy0k4bjrn0zq3492zz4x1qi"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; };
1018  TTMap = derive2 { name="TTMap"; version="1.20.0"; sha256="1vfj2zq4k4fzjnq48pckxkl3bwxwghhfwq8cz14hhwf10f735pq7"; depends=[Biobase colorRamps rgl SummarizedExperiment]; };
1019  TVTB = derive2 { name="TVTB"; version="1.24.0"; sha256="16lhbbisgxmvp86qfkp0cdd8akjld0ryklw41hi3k4ndimzax6hf"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; };
1020  TarSeqQC = derive2 { name="TarSeqQC"; version="1.28.0"; sha256="14ima8ymdb91lpkhdnsg6q7ajxs5p1xzzcsjfhixxkm341k45j35"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; };
1021  TargetDecoy = derive2 { name="TargetDecoy"; version="1.4.0"; sha256="1xx9y5faf5ic14h7cnxpb83nr34mqzz0c846g1z28f3x9d0kg9kz"; depends=[ggplot2 ggpubr miniUI mzID mzR shiny]; };
1022  TargetScore = derive2 { name="TargetScore"; version="1.36.0"; sha256="00z2zv5yhxriagvcz3bwkpr9ii0r9lw4vcf7kjp7x5pjzcc6q6wq"; depends=[Matrix pracma]; };
1023  TargetSearch = derive2 { name="TargetSearch"; version="2.0.0"; sha256="1m5v2d67w0hi3x1b6nlsq97z197djnr23d6lj9krib1im70cclwy"; depends=[assertthat ncdf4]; };
1024  TileDBArray = derive2 { name="TileDBArray"; version="1.8.0"; sha256="0xmf28h7bsbdr6kds7a99y1y2j52wppxsd1zrhbsipssdhxyir15"; depends=[DelayedArray Rcpp S4Vectors tiledb]; };
1025  TimiRGeN = derive2 { name="TimiRGeN"; version="1.8.0"; sha256="1jy700y81jjh03y7j66c2m150wl5l31mfd4xpm5jffq4361pwnjj"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; };
1026  TissueEnrich = derive2 { name="TissueEnrich"; version="1.18.0"; sha256="0mkxkmc7pmyqs7nayhhxqpi3a7vwydadzzb6gizliv0w9ic3fznv"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; };
1027  TitanCNA = derive2 { name="TitanCNA"; version="1.36.0"; sha256="135l414wk4mh3hbb17djh8pw5lvhl9yf28azc6g95djrahyhgi2g"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; };
1028  TnT = derive2 { name="TnT"; version="1.20.0"; sha256="0mn6n5cbpivf1d8n5ili4fnc663xkn90g3jbhdzk1pgi8lkk40fl"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; };
1029  ToxicoGx = derive2 { name="ToxicoGx"; version="2.2.0"; sha256="0bi7hf05a2nyd1yqz7sl961s7b5v4lx1p68xiyk91qnxm3ipcxn0"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; };
1030  TraRe = derive2 { name="TraRe"; version="1.5.0"; sha256="06w5rk2wjam5dhiya9n6kjbjahw4i46cb05zvakcy0f8gwrvb9ic"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment]; };
1031  TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.6.0"; sha256="02di1ijfv4rfjc1qn6zkg3bkxdc1y96dkbzhl8b4qzj23wzjy9x9"; depends=[ggplot2 pracma rgl]; };
1032  TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.6.0"; sha256="130w4vpsmrkg458n3wbhvlchg171gjqybvs2w14bxa608f3fzw03"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; };
1033  TransView = derive2 { name="TransView"; version="1.42.0"; sha256="0447jwij6bamx91gm92mjf5xc3pb4jlzsqnyragwr8wy9a3k5w2d"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; };
1034  Travel = derive2 { name="Travel"; version="1.6.0"; sha256="074v9hl4gzy8081mlas3mjaplchjrmk2bl4f5nkdjclh46xf3wgg"; depends=[Rcpp]; };
1035  TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.10.0"; sha256="0ykcngj7mf1hs6i801ivzncsd99qhmcwm9s3yr8j3qsy2d1nzki6"; depends=[ape igraph RedeR]; };
1036  TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.6.0"; sha256="136zgpn1l059i64gj6iappr6nz42z4wbxlg3zpc5npwkqrz3val2"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; };
1037  Trendy = derive2 { name="Trendy"; version="1.20.0"; sha256="0wn0alaqrcakz1rycyvr6ya7cvx28an9haa1azcfcr17ajlhdy2b"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; };
1038  TurboNorm = derive2 { name="TurboNorm"; version="1.46.0"; sha256="1dr1nvajgk5y695y2zjzaz57qxcb24zbcv82k953hha6hzmbknyq"; depends=[affy convert lattice limma marray]; };
1039  TypeInfo = derive2 { name="TypeInfo"; version="1.64.0"; sha256="0f5jm3pgrq3qawd42295n5x6qm5j2kl4xgj2l7jxwy6pd1hlnwmw"; depends=[]; };
1040  UCell = derive2 { name="UCell"; version="2.2.0"; sha256="1g7lgpcl9p0369q9mlvpax44fk3522y6ks2k112sk057fwnjpjp3"; depends=[BiocNeighbors BiocParallel data_table Matrix SingleCellExperiment SummarizedExperiment]; };
1041  UMI4Cats = derive2 { name="UMI4Cats"; version="1.8.1"; sha256="1v0hsb3ddcsb0ibw74mw3v1lqwglsxrrhhpkch00rz5vzm7n72qz"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; };
1042  UNDO = derive2 { name="UNDO"; version="1.40.0"; sha256="0yjxa0dv4j369m4hrvx163x0c9f8y68fnsq3zab9k8idfxbim500"; depends=[Biobase BiocGenerics boot MASS nnls]; };
1043  Ularcirc = derive2 { name="Ularcirc"; version="1.16.0"; sha256="1z10y0ix10fb4v3yf11vgh9zwbqnczrb7s0jsdn8jpkjq5nijrdy"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr plotgardener R_utils S4Vectors shiny shinydashboard shinyFiles shinyjs yaml]; };
1044  UniProt_ws = derive2 { name="UniProt.ws"; version="2.38.1"; sha256="0bxczw4xk02l9srg1lpxix068grx5qg3wvfh9n1b2bqnpxn4svbd"; depends=[AnnotationDbi BiocBaseUtils BiocFileCache BiocGenerics httpcache httr jsonlite progress rjsoncons RSQLite]; };
1045  Uniquorn = derive2 { name="Uniquorn"; version="2.18.0"; sha256="1b9cfyxszdxc7ja6g3nyn7dg4zk45mhn6l9jglhwcl6v1xnc8jay"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; };
1046  VAExprs = derive2 { name="VAExprs"; version="1.4.0"; sha256="10scvyn6m0aaygg0xy7j5978kfi3rm1yjdmas7b3l1cx58356s9k"; depends=[CatEncoders DeepPINCS DiagrammeR keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; };
1047  VCFArray = derive2 { name="VCFArray"; version="1.14.0"; sha256="1zcd7lx9vypym4svpg47lgnmrczgrswzpr5dwcfm6h7c3jwnbnhs"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; };
1048  VDJdive = derive2 { name="VDJdive"; version="1.0.0"; sha256="0qc95d6b3gy4rh90xp1iib88yjhr9v3jgja805an3rqr3c6r7a0m"; depends=[basilisk BiocParallel cowplot ggplot2 gridExtra IRanges Matrix RColorBrewer reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; };
1049  VERSO = derive2 { name="VERSO"; version="1.8.0"; sha256="1535si34m13w7z2k6ys2xvj73kdwik618iy8swvb44z73vg2xkp8"; depends=[ape Rfast]; };
1050  VaSP = derive2 { name="VaSP"; version="1.10.0"; sha256="1zvva74lwhng0j4k1kya6q07xgrav2f9pzxsdzgm1rrmnqcihdyb"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; };
1051  VanillaICE = derive2 { name="VanillaICE"; version="1.60.0"; sha256="148xbymfn3za74z5ml4csj6q875r7hk3iafgcifc797gnw203sl8"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; };
1052  VarCon = derive2 { name="VarCon"; version="1.6.0"; sha256="0y0arfjx5v6b4fc26xyv8ycvy5a2k77dkxgn7if7svjwkk39sgwk"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; };
1053  VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.44.1"; sha256="13zim7dglsd5w39v22d2qa3d1h5dx33c1r4fz3vzri64kac0lhzx"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; };
1054  VariantExperiment = derive2 { name="VariantExperiment"; version="1.12.0"; sha256="129a0ya2jq600r0dfx3n70kqchh9a8d23xvc1ym2zlm407hi0bnj"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SeqVarTools SNPRelate SummarizedExperiment]; };
1055  VariantFiltering = derive2 { name="VariantFiltering"; version="1.34.0"; sha256="110db9gcla796mbll3pin0hv2qp8r6khx0zzqfgzkp4mcyjxi62y"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; };
1056  VariantTools = derive2 { name="VariantTools"; version="1.40.0"; sha256="181igcmlyx3ddmhml9wqcgw6ffdrqpmg4imd6ipf68c90agdgaz0"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
1057  VegaMC = derive2 { name="VegaMC"; version="3.36.0"; sha256="07lpzzkwx9g2gcyqg33xxshwylmyzgbf2p63ck3kkyqv64ylkhw0"; depends=[Biobase biomaRt]; };
1058  VennDetail = derive2 { name="VennDetail"; version="1.14.0"; sha256="0976zqbp3xgxlq0b28r0z7shhmn7nrphhxqv8j3wdk3xxbgy4mzg"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; };
1059  ViSEAGO = derive2 { name="ViSEAGO"; version="1.12.0"; sha256="0y177yjw9bnsnfqnylwv8zhk7fyspx9qv94yw7jmfhxsh7azpafk"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; };
1060  Voyager = derive2 { name="Voyager"; version="1.0.10"; sha256="1d9zkirfc9gd0mxagyb8xa1s531ahr6ld3pb3c5qd1f3dsbfr6a6"; depends=[BiocParallel bluster ggnewscale ggplot2 Matrix patchwork rlang S4Vectors scales scico sf SingleCellExperiment SpatialExperiment SpatialFeatureExperiment spdep SummarizedExperiment]; };
1061  VplotR = derive2 { name="VplotR"; version="1.8.0"; sha256="0v9qbz9vg3cd7jjb0bhl2qp8dbwi4f98l4wmppzkz3il624w8ny5"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; };
1062  Wrench = derive2 { name="Wrench"; version="1.16.0"; sha256="0n7mvj9jdp8w5w64i49kkqzbrvpv2vzx6y6fb7g2sqp24wqrn39x"; depends=[limma locfit matrixStats]; };
1063  XDE = derive2 { name="XDE"; version="2.44.0"; sha256="1djsr92zyh4739ra8v36nylxr3z7rx9lll25mm06vc3l77jxlfzp"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; };
1064  XINA = derive2 { name="XINA"; version="1.16.0"; sha256="1c97lsb5shixh4n4mi9kh4gz4qnia9vq736rnzxbs03n5bvlmwlq"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; };
1065  XNAString = derive2 { name="XNAString"; version="1.6.0"; sha256="05bs972b132mccf7k0v6rmacbck0ydi5x06fgzs05m48ykkbx988"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; };
1066  XVector = derive2 { name="XVector"; version="0.38.0"; sha256="0ygdyh3s4qsaay930a5lbnmgh6a4gqp5ck9ww466yk0jyk1hxfp9"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; };
1067  Xeva = derive2 { name="Xeva"; version="1.14.0"; sha256="1qy3hj0dijb859q7a2ygb6il4mn2m3f9chy8lkj6lkq64xlayjxg"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; };
1068  YAPSA = derive2 { name="YAPSA"; version="1.24.0"; sha256="17yxzqvyaa423k0rskahlgqxcsi70flgsxniry3f4m8yvmghxxkz"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; };
1069  a4 = derive2 { name="a4"; version="1.46.0"; sha256="1sis4hwrxyn2x96yysz82gffl2kkj68ry945y15zwikwk80s31hb"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; };
1070  a4Base = derive2 { name="a4Base"; version="1.46.0"; sha256="14diri7gswd6h5p3bdhh20fy7i54d270mq985qcdvdyhx4kpw6g6"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; };
1071  a4Classif = derive2 { name="a4Classif"; version="1.46.0"; sha256="0lirj0qzzrm996g8yh30x61cg1qkh436qd8xzgv3y3y3n5jj5d3w"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; };
1072  a4Core = derive2 { name="a4Core"; version="1.46.0"; sha256="0plgfzsvg220v6k6p0g7izsfw2lj78331lqyvz0p9vd91ynwp41k"; depends=[Biobase glmnet]; };
1073  a4Preproc = derive2 { name="a4Preproc"; version="1.46.0"; sha256="00xs1vayl8v6in79iv7lwbn52yyyq4lv6k3k727g7il8x17mi8i0"; depends=[Biobase BiocGenerics]; };
1074  a4Reporting = derive2 { name="a4Reporting"; version="1.46.0"; sha256="09q8ng5kp47bqpj7m2y2112fkjxcnhzxk9v80hqksm8h1df46riv"; depends=[xtable]; };
1075  aCGH = derive2 { name="aCGH"; version="1.76.0"; sha256="05q303bf8acvhbdzqxqk2gf12vg0fdqknlxryn2cs8nijx40zp46"; depends=[Biobase cluster multtest survival]; };
1076  abseqR = derive2 { name="abseqR"; version="1.16.0"; sha256="1z5an4vsm55a0qr46qmp8562vc3xdam5f3840r8hcdnn5dvzw414"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; };
1077  acde = derive2 { name="acde"; version="1.28.0"; sha256="1d47hbna68qm517afk1wb0w9gb8j52p7nqh5axcc6h76zppsc1sp"; depends=[boot]; };
1078  adSplit = derive2 { name="adSplit"; version="1.68.0"; sha256="0a05j1g42wnw5lcn6g6vp2z3mnjz185b2hvdg362ln270r19gch6"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; };
1079  adductomicsR = derive2 { name="adductomicsR"; version="1.14.0"; sha256="0h180k4r1lrij1smpibbqgiki1hb2q87n5ay6habig4bxzbx773x"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; };
1080  affxparser = derive2 { name="affxparser"; version="1.70.0"; sha256="0p42rpyh96aph9jr8kiyjvv860jn7m7ji2nrib2vr2nl0jyaxqjs"; depends=[]; };
1081  affy = derive2 { name="affy"; version="1.76.0"; sha256="1iix9mq4aph6avs2qr64a7hip461cif56k6npvs5g69nj3rn50gj"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; };
1082  affyContam = derive2 { name="affyContam"; version="1.56.0"; sha256="0phf9rvxr45zq9m5rcjsiixmj9ilz518l628l8cd1hzfdk240ffy"; depends=[affy affydata Biobase]; };
1083  affyILM = derive2 { name="affyILM"; version="1.50.0"; sha256="0i2hjaqjz06ym5kbw5da1h3cahc630mjwljsji1l2ks0gjcipll0"; depends=[affxparser affy Biobase gcrma]; };
1084  affyPLM = derive2 { name="affyPLM"; version="1.74.2"; sha256="0f0faxjzlg0znhjfvf1490yc54npkx659jx76cddm5hk7q0blv3v"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; };
1085  affycomp = derive2 { name="affycomp"; version="1.74.0"; sha256="18bxnjcl7cbgwm3yf58608ghwnpci94xgil11zmbpgzgrpv9pkrs"; depends=[Biobase]; };
1086  affycoretools = derive2 { name="affycoretools"; version="1.70.0"; sha256="17slls8dihjnpm6bynic8cm2fbnfl5iqwimz0wz7c9x44d1bxi4l"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; };
1087  affyio = derive2 { name="affyio"; version="1.68.0"; sha256="1bdcz9sz4khs7p4ddryc4ir0fwcjrkwqka8y0c9n36ykiv4myfib"; depends=[zlibbioc]; };
1088  affylmGUI = derive2 { name="affylmGUI"; version="1.72.0"; sha256="0jds73pxqf522wcg8qd4b4k1qbhn51av5md1nhgcdnb6is0lzvxi"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; };
1089  aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.8.0"; sha256="1snsc2430cc7cd0k01n1rwa6vympd79g1mcch0paxxkq7msvfn42"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; };
1090  agilp = derive2 { name="agilp"; version="3.30.0"; sha256="15cw004g1vxfwvf939018vmlv9gym4r473jissamkygqdv78hcr0"; depends=[]; };
1091  airpart = derive2 { name="airpart"; version="1.6.0"; sha256="07zxv0sjhlajaw4gxpjni14qyyqn70ar8ph5cpibzcky1lx6pmkl"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; };
1092  alevinQC = derive2 { name="alevinQC"; version="1.14.0"; sha256="0rd64j4hkdk2d6mlld6qkv2m96lqc93807xjdf05xm8qkyx8g8y2"; depends=[cowplot dplyr DT GGally ggplot2 Rcpp rjson rlang rmarkdown shiny shinydashboard tximport]; };
1093  alpine = derive2 { name="alpine"; version="1.24.0"; sha256="0rjnwljh4c2f7ml0m14pllns4pvyjwwf23qsn6zjygm5x04bapf0"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors stringr SummarizedExperiment]; };
1094  altcdfenvs = derive2 { name="altcdfenvs"; version="2.60.0"; sha256="0fm4l93j6nm1w1w57zzryc1hkzapp8l16pkwjzdzllvwvsnsg8r0"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; };
1095  amplican = derive2 { name="amplican"; version="1.20.0"; sha256="1c990i6gxbarcpbdpkz017x94spwzap95l95synlizbkyif4z8ij"; depends=[BiocGenerics BiocParallel Biostrings data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; };
1096  animalcules = derive2 { name="animalcules"; version="1.14.0"; sha256="1alpsamrglgvzhcibkaf7m3gyiv61wbj1gvsq4lw6vjka100j9qr"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; };
1097  annaffy = derive2 { name="annaffy"; version="1.70.0"; sha256="0qxihlhx7ijspvgzdp8zxzrc44y9pwkygvsllh4v47p85ham49fg"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; };
1098  annmap = derive2 { name="annmap"; version="1.40.0"; sha256="18ia189qgsbcivpfsfss05dnd3kdc6gmswq8i1whwf9n227b2cv3"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; };
1099  annotate = derive2 { name="annotate"; version="1.76.0"; sha256="06jmnv36y3n6pl1vs6mp14sgyzl4l37g13diaa49k7qwp1kdpl3a"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; };
1100  annotationTools = derive2 { name="annotationTools"; version="1.72.0"; sha256="1z5vgblhi1kj2n9d4kbqgvwnm48372q0szgjshch8g39dypijvhd"; depends=[Biobase]; };
1101  annotatr = derive2 { name="annotatr"; version="1.24.0"; sha256="08f3xikgb0z1j7n8i04yn1dlfj8rxc76nmf5b7i5ljcp0jqiv07n"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; };
1102  anota = derive2 { name="anota"; version="1.46.0"; sha256="1a9xgcp48zjql6an3kiv8li4saw10k1dl7qzyyw84xvx856ilv97"; depends=[multtest qvalue]; };
1103  anota2seq = derive2 { name="anota2seq"; version="1.20.0"; sha256="14ggggfa6mdqcb2hfvann9mb66s7a9nxlnh31zblb3mrrjizg1x3"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; };
1104  antiProfiles = derive2 { name="antiProfiles"; version="1.38.0"; sha256="0f32373ncfjbvy05yngmfhhdgyc99a4idz3ry2xlabdmrbs5yac3"; depends=[locfit matrixStats]; };
1105  apComplex = derive2 { name="apComplex"; version="2.64.0"; sha256="0ycchrdhx7zh62f0p0gxm7g58m2w3c2lfkaasrwydspd3jx0rsna"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; };
1106  apeglm = derive2 { name="apeglm"; version="1.20.0"; sha256="1hk2y7r734wdd56f18l03kyq9p35kv653a5f7z2cjkq37gvcqrd1"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; };
1107  appreci8R = derive2 { name="appreci8R"; version="1.16.0"; sha256="1ssldnz4k21i4zpa6r9ja9wvzdlgbrr53pmivwjj7kbvy02906p7"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; };
1108  aroma_light = derive2 { name="aroma.light"; version="3.28.0"; sha256="01g9vfkmpfkn9nv71jyybq93lid6x93jbadjahngy98w67n3sin4"; depends=[matrixStats R_methodsS3 R_oo R_utils]; };
1109  arrayMvout = derive2 { name="arrayMvout"; version="1.56.0"; sha256="0g66s64n4qlvhkanp33bbvpi93rsdx5xq0mjr96d0195qbf6k156"; depends=[affy affyContam Biobase lumi mdqc parody]; };
1110  arrayQuality = derive2 { name="arrayQuality"; version="1.76.0"; sha256="0b5q71bpl9ln26622jvchd4f9i4kwayqkm9b75yj0a69imbfcn4s"; depends=[gridBase hexbin limma marray RColorBrewer]; };
1111  arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.54.0"; sha256="0jz9b3f8x1aal4sskq1a09jpavhm8alggwbj3ka42fb89xymrz33"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; };
1112  artMS = derive2 { name="artMS"; version="1.16.0"; sha256="17pb8ba2p8kk72b1p9x46h7xw3z2js5612388d4lsm4gl2flczyd"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; };
1113  atSNP = derive2 { name="atSNP"; version="1.14.0"; sha256="12za1agpbjjg4i94mikbkdbwqnkzzwz07v0gwdc7lpa9899q2ycb"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; };
1114  atena = derive2 { name="atena"; version="1.4.1"; sha256="0j6jq1cll8440i2srmy4lbvvyqawailk9byl9bnnzln1mdgys8r7"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix matrixStats Rsamtools S4Vectors scales sparseMatrixStats SQUAREM SummarizedExperiment]; };
1115  attract = derive2 { name="attract"; version="1.50.0"; sha256="0r5vykjqq33gchqv0wp2i6wpnk95cv26w5j4yqxcnw0bnqfhrgkm"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; };
1116  autonomics = derive2 { name="autonomics"; version="1.6.0"; sha256="1nbfp2p33ana2dpadf5m7s1xl1z0ccxhxkrmd5ya5n44rvk1drrq"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; };
1117  awst = derive2 { name="awst"; version="1.6.0"; sha256="0dvzkqpjv7whns9q8zj6n2nyvnaw2ib7i53vf049n94x52vh9x15"; depends=[SummarizedExperiment]; };
1118  bacon = derive2 { name="bacon"; version="1.26.0"; sha256="1v5kvvbc5fwvs84d2aq6gq6f6z0l68n7626gcnc8mh3sc27lxz53"; depends=[BiocParallel ellipse ggplot2]; };
1119  ballgown = derive2 { name="ballgown"; version="2.30.0"; sha256="0iy24vj4lg1k4fzdxf9blc47xsp4dmplajgabsb2s925l7jpxfvw"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; };
1120  bambu = derive2 { name="bambu"; version="3.0.8"; sha256="072rys45f9nl4b2dq559qakjcp2990ncdw49j49761izxgc7byzs"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; };
1121  bamsignals = derive2 { name="bamsignals"; version="1.30.0"; sha256="059pkm5pg9ssd0l8xrm13d0hscqnmlqcb4qb5p4fbzgx6088zg05"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; };
1122  bandle = derive2 { name="bandle"; version="1.2.2"; sha256="1zcwlrkhdzn5535mvma4nainv3fdjkh4c75bvkds6n8z68nqzqal"; depends=[BH Biobase BiocParallel BiocStyle circlize dplyr ggalluvial ggplot2 ggrepel knitr lbfgs MSnbase plyr pRoloc pRolocdata Rcpp RcppArmadillo rlang robustbase S4Vectors tidyr]; };
1123  banocc = derive2 { name="banocc"; version="1.22.0"; sha256="0d7ss3df6zcfsh8kgy35ghxa6f27ynjhdbi6mdypgk9q24f64r78"; depends=[coda mvtnorm rstan stringr]; };
1124  barcodetrackR = derive2 { name="barcodetrackR"; version="1.6.0"; sha256="1b3z83nkl8csxs88rcbmkkfjps71mwnylvpy3kjzyi02xw0kh0c1"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; };
1125  basecallQC = derive2 { name="basecallQC"; version="1.22.0"; sha256="0zaqgijazcii983agdhav2kn64kpdlmnmw54ipdgcbza6ky26hvh"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; };
1126  basilisk = derive2 { name="basilisk"; version="1.10.2"; sha256="14sgm3ia7jj5jckysqkljrffafg6rl8i7fgzsxv8ycnrwbd05d09"; depends=[basilisk_utils dir_expiry reticulate]; };
1127  basilisk_utils = derive2 { name="basilisk.utils"; version="1.10.0"; sha256="0gh29w8arg0glawprwshaixv07y756c4lx21h8jjbqlsrbspp8fw"; depends=[dir_expiry]; };
1128  batchelor = derive2 { name="batchelor"; version="1.14.1"; sha256="1yj84ba6px14hbqg8526527vfcxmzvmly34f7hba4vybdm1jscfm"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; };
1129  bayNorm = derive2 { name="bayNorm"; version="1.16.2"; sha256="066hxzhpgif8afa3ym9ksfppr6vb2j92gdis8613n7asd0pw5ci1"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; };
1130  baySeq = derive2 { name="baySeq"; version="2.31.0"; sha256="0lq2wfm3ibrpha9mqhhp6dgsx4jm2kwxvvrj0b62dzqspvg743wh"; depends=[abind edgeR GenomicRanges]; };
1131  bcSeq = derive2 { name="bcSeq"; version="1.20.0"; sha256="1dynr37kqs0p0as3psa7bw3lxnqwy7aj58mxk8xjsfm8xf7v4733"; depends=[Biostrings Matrix Rcpp]; };
1132  beachmat = derive2 { name="beachmat"; version="2.14.0"; sha256="0sa1wh997jfiz2y0dr7v12b7pvlf7icgv6arlyqy57winbnqa96m"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; };
1133  beadarray = derive2 { name="beadarray"; version="2.48.0"; sha256="0fr24gj6h2rr1r4l3n8myjaihjqi5yinwdsxqa5ih8m3v72dlrby"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; };
1134  beadarraySNP = derive2 { name="beadarraySNP"; version="1.64.0"; sha256="06hy89pclbyxjw5yf5i9bc3wr789b9pmhd9sdchgljlijs9vcj6g"; depends=[Biobase quantsmooth]; };
1135  beer = derive2 { name="beer"; version="1.2.0"; sha256="0njilbdgrv59ny4vks4xamf00qp3xagkks0sszwqq49lpzdicglj"; depends=[BiocParallel cli edgeR PhIPData progressr rjags SummarizedExperiment]; };
1136  benchdamic = derive2 { name="benchdamic"; version="1.4.0"; sha256="1f4rnbxxjbd3jyvl6m94hyl15bzxs1zbwyxqkypfmxa7gmj2vcrq"; depends=[ALDEx2 ANCOMBC BiocParallel corncob cowplot dearseq DESeq2 edgeR ggdendro ggplot2 ggridges limma MAST metagenomeSeq MGLM NOISeq phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment tidytext TreeSummarizedExperiment zinbwave]; };
1137  bgx = derive2 { name="bgx"; version="1.64.0"; sha256="1ylg9bnq8iwax0ap4c19v4mkbq673s8dfv49d94znsryg3fp93dl"; depends=[affy Biobase gcrma Rcpp]; };
1138  bigPint = derive2 { name="bigPint"; version="1.14.0"; sha256="1smf3w5a60jc0bpip5131ad9ykmnrcd33qi3pc3m50g6kn023wz2"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; };
1139  bigmelon = derive2 { name="bigmelon"; version="1.24.0"; sha256="094d43yv8af8sijp43ndcaincnsf3ng32vgwh6bfazlq5d601r6y"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; };
1140  bioCancer = derive2 { name="bioCancer"; version="1.26.04"; sha256="1xdp38i94ldkm4cqwbx93k9n8frrj2f1yrhzmrs2dda46qc0zsgh"; depends=[AnnotationDbi Biobase clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier htmlwidgets httr org_Hs_eg_db plyr R_oo radiant_data reactome_db ReactomePA shiny tibble visNetwork XML]; };
1141  bioDist = derive2 { name="bioDist"; version="1.70.0"; sha256="1fnx3q5arsilrvnhndplap8h4ydi9bvmlpfllj1li124hn5n2w3d"; depends=[Biobase KernSmooth]; };
1142  bioassayR = derive2 { name="bioassayR"; version="1.36.0"; sha256="0r56r4qxibgblriyfbd46i8jhc2bfr9ndr8i30920v9kc3n83cav"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; };
1143  biobroom = derive2 { name="biobroom"; version="1.30.0"; sha256="02gdc26bs0yx7hb53b8ncipsaw6ynfvjcx64qxkxxq1c4awjkhzy"; depends=[Biobase broom dplyr tidyr]; };
1144  biobtreeR = derive2 { name="biobtreeR"; version="1.10.0"; sha256="1j6w19k124x46gj2p8f1z0i2c03yhiiy1w0fqf504b2r7wy90jxc"; depends=[httpuv httr jsonlite stringi]; };
1145  biocGraph = derive2 { name="biocGraph"; version="1.60.0"; sha256="0ysdmv2hyl8jnmr42lkyvgfqb0z89f5p649ahx0ygs6fw0z226xa"; depends=[BiocGenerics geneplotter graph Rgraphviz]; };
1146  biocViews = derive2 { name="biocViews"; version="1.66.3"; sha256="0ddxz7a8csf1l4srnjcgg5ps00fkcbv99y5wa0yrl6p9zr2d61qy"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; };
1147  biocthis = derive2 { name="biocthis"; version="1.8.3"; sha256="0h1cwir6m3zg728vdxxz03rfwysw92m9djdfj0vayixli2j4xz5a"; depends=[BiocManager fs glue rlang styler usethis]; };
1148  biodb = derive2 { name="biodb"; version="1.6.1"; sha256="0mbqsias2ajw29d1wgl10y2cjqv3slrsgifccz0kh9l5r6bk28vz"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; };
1149  biodbChebi = derive2 { name="biodbChebi"; version="1.4.0"; sha256="02c0zvchkd9xf2gakd2ksa4mk8hd8bvg80paq2hx96xqdznhsh49"; depends=[biodb R6]; };
1150  biodbExpasy = derive2 { name="biodbExpasy"; version="1.2.0"; sha256="16g7xy6r8ggbvjxjl4frfsvsar8hcwgla7q4mmpr01gv9xjvn059"; depends=[biodb chk R6 stringr]; };
1151  biodbHmdb = derive2 { name="biodbHmdb"; version="1.4.0"; sha256="0zhwf313wilwmxxyibxx62bp9h6rp9jc7c9l46sbdgbcfkk3zdws"; depends=[biodb R6 Rcpp testthat]; };
1152  biodbKegg = derive2 { name="biodbKegg"; version="1.4.0"; sha256="1027jxyhz1spc9wk41xscnbhzimfji0xa6zfgld9gzpjms48gp49"; depends=[biodb chk lifecycle R6]; };
1153  biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.4.1"; sha256="0n5c5h0jq8hkmf9hw1phz46qz66jagd5waaf8mi14qnll532xhwx"; depends=[biodb lifecycle R6]; };
1154  biodbMirbase = derive2 { name="biodbMirbase"; version="1.2.2"; sha256="1v54ki7r2x8iyl9yf3v26ld6vvvl00qckq3m2mvswcbgvgldvhcg"; depends=[biodb chk R6 stringr]; };
1155  biodbNcbi = derive2 { name="biodbNcbi"; version="1.2.0"; sha256="0bjw5q9ls7p5pi13rzmax4iqfi5l7b0inga9b96bz18mcq071pqp"; depends=[biodb chk R6 XML]; };
1156  biodbNci = derive2 { name="biodbNci"; version="1.2.0"; sha256="18kjpc71gis82hkg6h7jn0qqwc3m2dlc6ddmyr9cfmm1wvr3fdc6"; depends=[biodb chk R6 Rcpp testthat]; };
1157  biodbUniprot = derive2 { name="biodbUniprot"; version="1.4.0"; sha256="1xg4f72maczqm2srscnzj3fhibnsya49d9a00d5r6qg1avc3g33v"; depends=[biodb R6]; };
1158  biomaRt = derive2 { name="biomaRt"; version="2.54.1"; sha256="13nhp97cklaimc3cd931hz584nc58szk2gyxrkfhp7knfli6jbpi"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; };
1159  biomformat = derive2 { name="biomformat"; version="1.26.0"; sha256="0728fpj05bvna5lpm29pdbn4slfmq16nz35as086ddbl2hhc9ni1"; depends=[jsonlite Matrix plyr rhdf5]; };
1160  biomvRCNS = derive2 { name="biomvRCNS"; version="1.38.0"; sha256="0n026b744ah5kcnipsyiqqs7vlz5n5im1kgv35i2pgxyzvf7a8sn"; depends=[GenomicRanges Gviz IRanges mvtnorm]; };
1161  biosigner = derive2 { name="biosigner"; version="1.26.0"; sha256="11ncmxy4wqdg30w8a6dgcsywyzda49f9al435fz3pfj5rmlbbrlj"; depends=[Biobase e1071 MultiAssayExperiment MultiDataSet randomForest ropls SummarizedExperiment]; };
1162  biotmle = derive2 { name="biotmle"; version="1.22.0"; sha256="1sbwbz0xdws31lsh46mfcijqmi6rm050r1d6vwii65q686x5j43w"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; };
1163  biovizBase = derive2 { name="biovizBase"; version="1.46.0"; sha256="0k56bq3g5vwnd0vkqg7x7v7i9bakwb8s1yl7k5nwj26k4aw96lw6"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; };
1164  biscuiteer = derive2 { name="biscuiteer"; version="1.12.0"; sha256="1fq2nj0vclpxavqj5qx7jc3ympg00izxn9fpy4mlhyp9l921z13m"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute IRanges Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; };
1165  blacksheepr = derive2 { name="blacksheepr"; version="1.12.0"; sha256="0a30w7n4rcsq4h7ggji8nbk1zx4h9ci7di01xnhks898f59w9ii0"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; };
1166  blima = derive2 { name="blima"; version="1.32.0"; sha256="1myq7giagr5bhkk96w9dijl01pcqkv288hakv7xbawv5wf5mcima"; depends=[beadarray Biobase BiocGenerics Rcpp]; };
1167  bluster = derive2 { name="bluster"; version="1.8.0"; sha256="1xi9vl09nm95l35kb9n3pn3j9qxw8976lss3cx0ppwnxd2mjr6vy"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; };
1168  bnbc = derive2 { name="bnbc"; version="1.20.0"; sha256="18wwic1d13ywn85p415pwg2bh32qiri0kzwsa9yk7m415l87i123"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; };
1169  bnem = derive2 { name="bnem"; version="1.6.0"; sha256="0v7xn2hj8q53vjhzjrc0vvqvw13waf3mkf4zs0nakiwrdhbr0117"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; };
1170  borealis = derive2 { name="borealis"; version="1.2.2"; sha256="0nhg29pr1d0wyn10cay5yi3p4vq5d7vgqdsq0c1vrf29aphzjf69"; depends=[Biobase bsseq cowplot doParallel dplyr DSS foreach gamlss gamlss_dist GenomicRanges ggplot2 plyr purrr R_utils rlang snow]; };
1171  brainflowprobes = derive2 { name="brainflowprobes"; version="1.12.0"; sha256="17fdig1ja8mqx6jhpplqmyq8314gk2fid8dd2bfbwj61421gqp4d"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; };
1172  branchpointer = derive2 { name="branchpointer"; version="1.24.0"; sha256="1900czfg3a9x8fqqqs3x7saph7k4ky6wk0f41d8fjdj88fyxkgsk"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; };
1173  breakpointR = derive2 { name="breakpointR"; version="1.16.0"; sha256="0j1f43lhgkapjyxlil9fflqh9nf3andhmvirdcv45y60wvljn4gx"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; };
1174  brendaDb = derive2 { name="brendaDb"; version="1.12.0"; sha256="19qig4anjzg7p3yxcx48lh0j6vz903q8qz92c28v45bki4mglz82"; depends=[BiocFileCache BiocParallel crayon dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr]; };
1175  bridge = derive2 { name="bridge"; version="1.62.0"; sha256="02rf15f3r1kazxml8mk9mi1zxgglsdfrpbg7ny9w0s65f413grg8"; depends=[rama]; };
1176  bsseq = derive2 { name="bsseq"; version="1.34.0"; sha256="0rd0ihr1ai1kvly2zf5y2qx3qyhk3ag2mdsrwqnzs67xkv99glsf"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; };
1177  bugsigdbr = derive2 { name="bugsigdbr"; version="1.4.3"; sha256="0kicaqfq3j2njm472rgbr78d1mf5vgshrxb97dh4knvby3668b3r"; depends=[BiocFileCache vroom]; };
1178  bumphunter = derive2 { name="bumphunter"; version="1.40.0"; sha256="0jwbhd2fhm1w5slwhz8krnw835a8qb4akm3n3pv867bvi0xnp3g2"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; };
1179  cBioPortalData = derive2 { name="cBioPortalData"; version="2.10.3"; sha256="0i61prk84jrn02r7127ryw4gv3zbiv5fmfy5nk6gf7x9i77vkynw"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; };
1180  cTRAP = derive2 { name="cTRAP"; version="1.16.0"; sha256="1k2zd67x5j1w4ra87y3w1zkn7ssld6f7siq6ibx3bks3h54rvj1x"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; };
1181  cageminer = derive2 { name="cageminer"; version="1.4.0"; sha256="0nwphmmg0ylw9v9mx88ygv37qaq02n2ypgbvnqx08hb15bk4cr5b"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2]; };
1182  calm = derive2 { name="calm"; version="1.12.0"; sha256="16ab0hxfk9m3jplwrf5ybxikz7ai54l7xmgv2kcc98ima8lbaml6"; depends=[mgcv]; };
1183  canceR = derive2 { name="canceR"; version="1.32.0"; sha256="1w5nsbw2m3dbzj5nph5p5rzl0476j2zacd735f1yzl0y2241vrjx"; depends=[Biobase circlize Formula geNetClassifier GSEABase httr phenoTest plyr R_methodsS3 R_oo rpart RUnit survival tkrplot]; };
1184  cancerclass = derive2 { name="cancerclass"; version="1.42.0"; sha256="1px53j601a17gslyla7msq6cvxghjqpy818cqdxp4ffq13wsrydr"; depends=[binom Biobase]; };
1185  cardelino = derive2 { name="cardelino"; version="1.0.0"; sha256="1ma4clkrkrjvy12ln2d2smyzzsz9y9554f5wgwmh9kv6s4xc66qs"; depends=[combinat GenomeInfoDb GenomicRanges ggplot2 ggtree Matrix matrixStats pheatmap S4Vectors snpStats VariantAnnotation vcfR]; };
1186  casper = derive2 { name="casper"; version="2.32.0"; sha256="0ibdfx7fb99zp5p94f5aga6kpnwg19500pg4nlf2yiqddpsc864s"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; };
1187  categoryCompare = derive2 { name="categoryCompare"; version="1.42.0"; sha256="1m9kj5ks35wklb30zamzk450sgf01mc1k7a4wi8y1jrp7i32d5ci"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; };
1188  cbaf = derive2 { name="cbaf"; version="1.20.1"; sha256="1d0cr30gphccsh9d34821cm4dcshpv4ql1a8vdnv9xmbyjvlrmk3"; depends=[BiocFileCache cBioPortalData genefilter gplots openxlsx RColorBrewer]; };
1189  cbpManager = derive2 { name="cbpManager"; version="1.6.0"; sha256="0qvlyy5m00nxzyaap8lwc9l5mdgr5pya7x7p56cwcwfhlji1d0wm"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; };
1190  ccImpute = derive2 { name="ccImpute"; version="1.0.2"; sha256="0vv2mpfi3xa4hmpdi0b8fj2prs15q3i2dim0mpxi3gfpczqdsgk5"; depends=[BiocParallel matrixStats Rcpp RcppEigen SIMLR]; };
1191  ccfindR = derive2 { name="ccfindR"; version="1.18.0"; sha256="0snxm5zqa93q9hmqlkbij8saw2q0hhh95d12jmffp5yf1n1d8r9s"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; };
1192  ccmap = derive2 { name="ccmap"; version="1.24.0"; sha256="1cb6z30vx3r2d1qdvrjb9qa6m5dglar8yji9dg9mz5yiygdbvwf7"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; };
1193  ccrepe = derive2 { name="ccrepe"; version="1.34.0"; sha256="1xnlsf0gird9ya0gd2xqjy6c85q5yrbaxv2kg31cn0wdlg55dgfh"; depends=[infotheo]; };
1194  ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.10.0"; sha256="1phrn8aisjnbzqh7npvngrnk9m1bxwv6d0as1sf1gy8ks4piy4r7"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; };
1195  celaref = derive2 { name="celaref"; version="1.16.0"; sha256="13a0hb72i9vnslsmidgwzdsma6qfxq1syfbij726viwaxl6zmxp7"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; };
1196  celda = derive2 { name="celda"; version="1.14.2"; sha256="1klpby6m5wr0s2v8s62cjq2vp3kvrlni13pb48wmp2d191vaxl62"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; };
1197  cellHTS2 = derive2 { name="cellHTS2"; version="2.62.0"; sha256="0gkdvdda90m9qq2j5svmrip0kc601zbg7kca4m71qymwvvrdj4nl"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; };
1198  cellTree = derive2 { name="cellTree"; version="1.27.0"; sha256="0yfr59fcbdj03ikkpvw1qcxqrjbkz7nkfmb5m1xr4k9qs39bq9sb"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; };
1199  cellbaseR = derive2 { name="cellbaseR"; version="1.22.0"; sha256="0i1b5lavzd0jqa5r1l1b3c22ana5vrk7f68385n7g1l8i5fl5ldr"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; };
1200  cellity = derive2 { name="cellity"; version="1.26.0"; sha256="0f1d83q3nbvjsk3077793i234yqy71yq6plvvya93vxq32b7ppsh"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; };
1201  cellmigRation = derive2 { name="cellmigRation"; version="1.6.0"; sha256="0aj7px50vy27ijx1sgszsxpv13rzsjlsa14m11hwmxdnz1yiihyf"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; };
1202  cellscape = derive2 { name="cellscape"; version="1.22.0"; sha256="0bbsq5hqhsv5zs79256iv2w6pid3fdg6yjv86n4fc7qzh9lgkxf5"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; };
1203  cellxgenedp = derive2 { name="cellxgenedp"; version="1.2.2"; sha256="03n39f51vdxylb30qr658hvx5av1b72nh8lnvn2bvvmwjd5ym3pp"; depends=[curl dplyr DT httr jsonlite rjsoncons shiny]; };
1204  censcyt = derive2 { name="censcyt"; version="1.6.1"; sha256="19qw588iwnl65nk49vnddi4jgag8a7x5hafwg2p1q37zx8y2hyyc"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; };
1205  cfDNAPro = derive2 { name="cfDNAPro"; version="1.4.0"; sha256="0441gyjfbi35444hng16zwjmyj74yfnq6m4l1wlcz8bpss57axkj"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr plyranges quantmod rlang Rsamtools stringr tibble]; };
1206  cghMCR = derive2 { name="cghMCR"; version="1.56.0"; sha256="1c1h987c61camgz8wjlfg7jlkvfgz3xxkjflrnn97dx8kqzd20ll"; depends=[BiocGenerics CNTools DNAcopy limma]; };
1207  chimeraviz = derive2 { name="chimeraviz"; version="1.24.0"; sha256="05yg31s2jqdpk8rc1jkb7ah6hws4m11jz5chg5mmxadq78qxngzp"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; };
1208  chipenrich = derive2 { name="chipenrich"; version="2.22.0"; sha256="02cy0lk2gllrizmk8fwnzk07k2kd4ha3xiynqvp9zgg0hr6wjyd3"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; };
1209  chipseq = derive2 { name="chipseq"; version="1.48.0"; sha256="1gmspbf5bmlqgbq280lnh4m9bmhzv6d0aj15dmggizsgb9d34vp5"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; };
1210  chopsticks = derive2 { name="chopsticks"; version="1.64.0"; sha256="1kc9a0ir7wz338c5y0lrrn74ik3i4fnh2m3ag5z2kx2xaxp4w90i"; depends=[survival]; };
1211  chromDraw = derive2 { name="chromDraw"; version="2.28.0"; sha256="0lc782v1m5rm6a0mr8fzhvnv9dw5z3q1rdq6g4yd8vv70579g0ir"; depends=[GenomicRanges Rcpp]; };
1212  chromPlot = derive2 { name="chromPlot"; version="1.26.0"; sha256="0s9x125mnfxsznbsyylgnax4529zvqdqszmgghgin213dx6jhfcm"; depends=[biomaRt GenomicRanges]; };
1213  chromVAR = derive2 { name="chromVAR"; version="1.20.2"; sha256="034in81lsdxa8j1na2zymck2y67235qprin8hak3dwa7lwzbm12z"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; };
1214  chromstaR = derive2 { name="chromstaR"; version="1.24.0"; sha256="17p22vsmb9h8ap0f2rzyg2r71srj3sxiapzyaz1csad2vfjxfi2r"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; };
1215  chromswitch = derive2 { name="chromswitch"; version="1.20.0"; sha256="0ch4jcyr4f130d6cmqqkcvnwq3xfisnns3266m3sf62ng4w1akq5"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; };
1216  cicero = derive2 { name="cicero"; version="1.16.2"; sha256="1gf359x6lvm3kc4mlsh7vxf8lmvhp080fi0cksvb4mcypafp67cv"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; };
1217  circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.12.2"; sha256="1i954hn7xyajpkg4fks04jd86flcmy2326nzpmxgy8h69jkzdc8q"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; };
1218  cisPath = derive2 { name="cisPath"; version="1.38.0"; sha256="0g3sl12hrh9asghm3ylz1l1v4hlcrsz47jpihqgkh829w0dz67rf"; depends=[]; };
1219  cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.36.0"; sha256="0bklip44ls8i8baq8cqh4wm5y4jxn0dyg035iszm209qgkxk8n17"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges S4Vectors seqinr stringr]; };
1220  cleaver = derive2 { name="cleaver"; version="1.36.0"; sha256="0pmgnw807wn22zxz3z3f2gfjqfqi555858anhp125n2hf8pj6k16"; depends=[Biostrings IRanges S4Vectors]; };
1221  cliProfiler = derive2 { name="cliProfiler"; version="1.4.0"; sha256="1m7iwmhwlf9xmbmjnlgrxdd5fhawx76sz5lskrphskj0g2xasajc"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; };
1222  clippda = derive2 { name="clippda"; version="1.48.0"; sha256="16wcnc0pnxj50bzwlkfsh56g0cdagfk2yjvaz5yqsrh4p609l0y3"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; };
1223  clipper = derive2 { name="clipper"; version="1.38.0"; sha256="0isjvpndqgn615vw75kzhy3nr34q18w096y5s3536y8zrdj0ibag"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; };
1224  cliqueMS = derive2 { name="cliqueMS"; version="1.12.2"; sha256="13v6js8j4pzslg9j3y28rrc8zfzwzn2lhn4wq2n3qz0lqaf9856z"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; };
1225  clst = derive2 { name="clst"; version="1.46.0"; sha256="0ff9mp78jslqw7b240h84s4n4vii5ga2bam9416fzgs0q8pz1whg"; depends=[lattice ROC]; };
1226  clstutils = derive2 { name="clstutils"; version="1.46.0"; sha256="02x8z1z0h4j6qrv4pyskfbkylzgnzhfyvb31d3jd6gyarazadzrs"; depends=[ape clst lattice rjson RSQLite]; };
1227  clustComp = derive2 { name="clustComp"; version="1.26.0"; sha256="0zpyxy7zba8j8zx3zr3ph4xvn6q6jp8lv3x99760aw98ccjm6l3h"; depends=[sm]; };
1228  clusterExperiment = derive2 { name="clusterExperiment"; version="2.18.2"; sha256="03flqixy6flaqynpaf3nz42kwf71v53wxs5vywj3bqmninzywmbk"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; };
1229  clusterProfiler = derive2 { name="clusterProfiler"; version="4.6.2"; sha256="017wqd1nwcrhbpzvhcqc3if0n084dspq7y3fbc5dnik6yi04q0dg"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim gson magrittr plyr qvalue rlang tidyr yulab_utils]; };
1230  clusterSeq = derive2 { name="clusterSeq"; version="1.22.0"; sha256="05ap73pyax6nfb474d2xda5279c8z84pvkshzxwp1q3rb8fn4s6d"; depends=[baySeq BiocGenerics BiocParallel]; };
1231  clusterStab = derive2 { name="clusterStab"; version="1.70.0"; sha256="0kmmb33mq0rgzp83rih8hb7gv51djfn6iak0b2b9806jx3c1cw5y"; depends=[Biobase]; };
1232  clustifyr = derive2 { name="clustifyr"; version="1.10.0"; sha256="1y7ndmc6mjs841a6nk4b4njpkjaanardpkh0bzacfj288znpx7dg"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; };
1233  cmapR = derive2 { name="cmapR"; version="1.10.0"; sha256="1cgjwnn7w944id42qhnh5xw45hjijl4w26j50fcdiwwl18fdpdxf"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; };
1234  cn_farms = derive2 { name="cn.farms"; version="1.46.0"; sha256="1l1y1974bibqymibz7smmn8rgn27y3wh5kqkbshh1rd6b9xml0zj"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; };
1235  cn_mops = derive2 { name="cn.mops"; version="1.44.0"; sha256="1nvh23v63fj5l53bdipkqh1nvr307n4hsr2qi5ba4qs2hpf94wcz"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; };
1236  cnvGSA = derive2 { name="cnvGSA"; version="1.42.0"; sha256="11xlk9ljwn5zzjawf3gj7715rxxsh67gxrn2agrfzdhxickf8x4k"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; };
1237  coGPS = derive2 { name="coGPS"; version="1.42.0"; sha256="12dxim7dd6nh3pgyn5yg4xkmvv5wpxy202qnarliv2smgs5f9w30"; depends=[]; };
1238  coMET = derive2 { name="coMET"; version="1.30.0"; sha256="0i9r9gs7s8ami9hpfkmw4hshgly6107ib91n7l7l8dkpljndicfa"; depends=[biomaRt corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; };
1239  coMethDMR = derive2 { name="coMethDMR"; version="1.2.0"; sha256="1d602pg9aaqvjwpdjnn67fb98n6sy557lkqfg8rybybjzx705g4h"; depends=[AnnotationHub BiocParallel bumphunter ExperimentHub GenomicRanges IRanges lmerTest]; };
1240  coRdon = derive2 { name="coRdon"; version="1.16.0"; sha256="095vk28v1a62cqz0vavvbvjij3azr5sr2n1px31zpx91m9jy616v"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; };
1241  codelink = derive2 { name="codelink"; version="1.66.0"; sha256="0w3ddmz22dw7nvgl1wxahlqjw2qsjyh0p001mq5kyqsk0b7zdx0y"; depends=[annotate Biobase BiocGenerics limma]; };
1242  coexnet = derive2 { name="coexnet"; version="1.19.1"; sha256="0zw8a8pqmajqnv5n6i7fn7krwax81sd4c6wqm4zr61fy2blqzv3h"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; };
1243  cogena = derive2 { name="cogena"; version="1.32.0"; sha256="0hxxk7ijrbji40v5y4y5r6zv6j6z1vn5dwxfxqz4x91igmv8p3qc"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; };
1244  cogeqc = derive2 { name="cogeqc"; version="1.2.1"; sha256="0icfi1jrpn21k2pww0pix1v7xmjnb16ylh5r2qcp8xgd1wcyna7a"; depends=[Biostrings ggplot2 ggtree igraph patchwork reshape2]; };
1245  cola = derive2 { name="cola"; version="2.4.0"; sha256="0hwkcpbxnh3n4iik492dsxzh1kimg6cwsdlgdjqrzid61rbg5zax"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; };
1246  comapr = derive2 { name="comapr"; version="1.2.0"; sha256="1b2727fr7fczcy420rg64xhls63pyw7lqzcv8rjcbazjl6673rkb"; depends=[BiocParallel circlize dplyr foreach GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz IRanges Matrix plotly plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment tidyr]; };
1247  combi = derive2 { name="combi"; version="1.10.0"; sha256="1522np734gbk4g6m64832f32fsq9fsv0gjgk0qf3axny8l7g3pxy"; depends=[alabama BB Biobase cobs DBI ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; };
1248  compEpiTools = derive2 { name="compEpiTools"; version="1.32.0"; sha256="0v5rwcahqz77dcg57agllbvrnfk4cfngzgzib2c2xkjdvyz8bd72"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; };
1249  compartmap = derive2 { name="compartmap"; version="1.16.0"; sha256="0vm5ip7gxs2s0lij3qf3fjgfd4b08f5c8visq9dhjx87bc9dgbcz"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; };
1250  compcodeR = derive2 { name="compcodeR"; version="1.34.0"; sha256="1cavvgi6gfd06krsabd5amvjlyclnc5lzpy1jl37a5ssppfmymzr"; depends=[ape caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS matrixStats modeest phylolm ROCR sm stringr vioplot]; };
1251  conclus = derive2 { name="conclus"; version="1.5.0"; sha256="09rk73sxqxsy0zq07n67jxqbzb1rlxlj0phg6987szdjwxmag6jc"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra org_Hs_eg_db org_Mm_eg_db pheatmap rlang Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; };
1252  condiments = derive2 { name="condiments"; version="1.6.0"; sha256="0wf1nrwp4inzwnw29s7ig2601hi3ppwq50vp1vfd65krfkj5ww3w"; depends=[BiocParallel distinct dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; };
1253  consICA = derive2 { name="consICA"; version="1.0.0"; sha256="0rfy6v601sxdpsjkli21927w56jjw0dcav1vnp2sibbb7r2ymrwc"; depends=[BiocParallel fastICA GO_db graph org_Hs_eg_db pheatmap sm SummarizedExperiment survival topGO]; };
1254  consensus = derive2 { name="consensus"; version="1.16.0"; sha256="180klz7minp2i4v50nkk2svjkhsl5mbv025d2a0h6klmlsmnvyi0"; depends=[gplots matrixStats RColorBrewer]; };
1255  consensusDE = derive2 { name="consensusDE"; version="1.16.0"; sha256="0v093plal029m3gvn6ng7i130c6dflwjvjvqipfq37cchkqpibf4"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; };
1256  consensusOV = derive2 { name="consensusOV"; version="1.20.0"; sha256="0lixy4qg618vqv1i9mjz0v12rnzlakpdbv9wjkbxfc8l5yybqpmh"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; };
1257  consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.26.0"; sha256="1cn556l4s498sa5immf310ljf7vfwd1vkxk16nsjcf29m91823ms"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; };
1258  contiBAIT = derive2 { name="contiBAIT"; version="1.26.0"; sha256="0yw06870jvgzyangyf8sz5sa07zmb7iq1vhlw96gq2jlxzq4s32h"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; };
1259  conumee = derive2 { name="conumee"; version="1.32.0"; sha256="0w4g0ybcxzbbnzdywm0n9ycmbb11jxjgr7fiwmb60483p25hx6z2"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; };
1260  convert = derive2 { name="convert"; version="1.74.0"; sha256="14cnr2b8ijnyk8syz211pnr5246hnsj0qia6b07gz372llv0mk2w"; depends=[Biobase limma marray]; };
1261  copa = derive2 { name="copa"; version="1.66.0"; sha256="1jznqf2n8c2w9d36xp2qwbyfap7kyp4qs3d8bpb8s75hi9yzr04z"; depends=[Biobase]; };
1262  copynumber = derive2 { name="copynumber"; version="1.38.0"; sha256="1a664bllaq9pbb5cpd01j919qirylvnm8qd49lwlz89jvqjdri19"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; };
1263  corral = derive2 { name="corral"; version="1.8.0"; sha256="1xzajapql5dx4chbbcz47qgfm21k82fsd3d0q8626rpgi8lfc5wl"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals reshape2 SingleCellExperiment SummarizedExperiment transport]; };
1264  coseq = derive2 { name="coseq"; version="1.22.0"; sha256="1fw10gqzxjn8j8109ahcz8a6yyfpxlifwfmj78m5q72nba0vi4aq"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; };
1265  cosmiq = derive2 { name="cosmiq"; version="1.32.0"; sha256="0yy6q8b4il7khwar9rbjn9g2jb10ck4lm6znh2lajblsr3zfgl9w"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; };
1266  cosmosR = derive2 { name="cosmosR"; version="1.6.0"; sha256="17mjjm3mri34m1ksck8dj7bf8ym10kzinq6zn8plns15zljy4cxp"; depends=[CARNIVAL dorothea dplyr GSEABase igraph progress purrr rlang stringr visNetwork]; };
1267  countsimQC = derive2 { name="countsimQC"; version="1.16.1"; sha256="08x6zcmak85x9n4ycxy7y2zkh7ljcnv0q4qgy5f48mjhiha6yghz"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 ragg randtests rmarkdown SummarizedExperiment tidyr]; };
1268  covEB = derive2 { name="covEB"; version="1.24.0"; sha256="19km0q0nmgfvsz5w8k74f735j9sa8s90nvz77lv8afjq04spznxy"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; };
1269  covRNA = derive2 { name="covRNA"; version="1.24.0"; sha256="1p3kl3qwriab2c6f8qxl65ssys759fwvcp7jvsc3bbpbkldirz59"; depends=[ade4 Biobase genefilter]; };
1270  cpvSNP = derive2 { name="cpvSNP"; version="1.30.0"; sha256="0hkrf1488jj8wzzbsxsc71winrmckcql449jawvxsz9ps92r3314"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; };
1271  cqn = derive2 { name="cqn"; version="1.44.0"; sha256="1y8g4dx86s95w0h1y98r2hfyphzw648jz5lhrs6xbrnhz6ficzvn"; depends=[mclust nor1mix preprocessCore quantreg]; };
1272  crisprBase = derive2 { name="crisprBase"; version="1.2.0"; sha256="1ym9hm6q124mzjf7a0fky4qray8ylkjga17lbfr083prnb9jkgi8"; depends=[BiocGenerics Biostrings GenomicRanges IRanges S4Vectors stringr]; };
1273  crisprBowtie = derive2 { name="crisprBowtie"; version="1.2.0"; sha256="1gzil30hnbrv95y4pr8mzvm5xq8xn19c8lh4kk93480ki8j5ll5s"; depends=[BiocGenerics Biostrings BSgenome crisprBase GenomeInfoDb GenomicRanges IRanges Rbowtie readr stringr]; };
1274  crisprBwa = derive2 { name="crisprBwa"; version="1.2.0"; sha256="1qyi4vpmharkv8h94rqnm85bg56ks16ba5pcbrcmiwm1mr5v33lp"; depends=[BiocGenerics BSgenome crisprBase GenomeInfoDb Rbwa readr stringr]; };
1275  crisprDesign = derive2 { name="crisprDesign"; version="1.0.0"; sha256="15icrrg5ha16g3pbbsxck8zl7x8j433jif7l4l6vf3z67x9pyz75"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome crisprBase crisprBowtie crisprScore GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix MatrixGenerics rtracklayer S4Vectors VariantAnnotation]; };
1276  crisprScore = derive2 { name="crisprScore"; version="1.2.0"; sha256="01zz9hffns2papwczckfhcq7nq832l0hc621k1hx5r2mzrdzsa8g"; depends=[basilisk basilisk_utils BiocGenerics Biostrings crisprScoreData IRanges randomForest reticulate stringr XVector]; };
1277  crisprVerse = derive2 { name="crisprVerse"; version="1.0.0"; sha256="0l1iv9kwwwncav9y2zpkfk937r9bwni6k2ca0c3yafqwpyljn94f"; depends=[BiocManager cli crisprBase crisprBowtie crisprDesign crisprScore crisprViz rlang]; };
1278  crisprViz = derive2 { name="crisprViz"; version="1.0.0"; sha256="1f4iv2iy751dvik2awwlk46fqnfgqwn9r2kv2iypiyysk1bgwq8d"; depends=[BiocGenerics Biostrings BSgenome crisprBase crisprDesign GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges S4Vectors]; };
1279  crisprseekplus = derive2 { name="crisprseekplus"; version="1.24.0"; sha256="1hmyla7qppbd81jans5kxd6z11vrqhgza7gvibyih4czria5sb05"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; };
1280  crlmm = derive2 { name="crlmm"; version="1.56.0"; sha256="0nhvwdzl71z3c01vlazrarbrz77c8rf5qmsfc9w9fr054dc9r71i"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; };
1281  crossmeta = derive2 { name="crossmeta"; version="1.24.0"; sha256="0b8l44j9jnn1d79m718cyrggfhy5bq59rws2fjvcal0p8mlsl2n8"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets stringr sva tibble XML]; };
1282  csaw = derive2 { name="csaw"; version="1.32.0"; sha256="1nv8mch67mhzwj793w2lcf98x6iz7kin7xp6ipn6p06a4fxzglz7"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; };
1283  csdR = derive2 { name="csdR"; version="1.4.0"; sha256="1xyskzy5khbsn1q0fa1824asm2ib8jdaz324dqr6vg7kngqn8sf3"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; };
1284  ctc = derive2 { name="ctc"; version="1.72.0"; sha256="098a65fk9la639sqihhsghhgb3hyzv35j6akph908zwq5grsv0c5"; depends=[amap]; };
1285  ctsGE = derive2 { name="ctsGE"; version="1.24.0"; sha256="18rnpxm55w4gr78a64i20yg7jz04cyjr4rgd88czkkwhkj73q465"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; };
1286  cummeRbund = derive2 { name="cummeRbund"; version="2.40.0"; sha256="1fzkhnlgv4zd0slr12d5aichyxsca86p82fyjymiz7f5fqdvqmd9"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; };
1287  customCMPdb = derive2 { name="customCMPdb"; version="1.8.0"; sha256="1jqr80qgnhvsxaagpg7ww115wq0m8jh8sf5pg09xmwh3909y48cr"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; };
1288  customProDB = derive2 { name="customProDB"; version="1.38.0"; sha256="0qc3as0cmhjw9gv5akb35x8vq8ksn14ycs8yajfaczg8g7216x1i"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; };
1289  cyanoFilter = derive2 { name="cyanoFilter"; version="1.6.0"; sha256="0c440ryv56r7ck2l9i93nzaj5wkmnahhkig3l8nvbq0iq22qccir"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; };
1290  cycle = derive2 { name="cycle"; version="1.52.0"; sha256="1lahh78i8qv7xfm0k2qkh4chpjl9jp51z4n9q1xks0y5v2934mvs"; depends=[Biobase Mfuzz]; };
1291  cydar = derive2 { name="cydar"; version="1.22.0"; sha256="02ci2kl4pq47n0bsd19514g8f098249lqldq2ywhrrql0wibggh3"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; };
1292  cytoKernel = derive2 { name="cytoKernel"; version="1.4.0"; sha256="1mq3b6fjns0q5pr2vc37lnviy2jq02lsx0bhpc43yna5gv45qv6p"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; };
1293  cytoMEM = derive2 { name="cytoMEM"; version="1.2.0"; sha256="1pz4sfp43d85xd8dkbdpr9kzl6w6g7lm98zqf3cmiz4mnb7rzjwp"; depends=[flowCore gplots matrixStats]; };
1294  cytolib = derive2 { name="cytolib"; version="2.10.1"; sha256="0rgqlqasil75b03c8c4nyg71ybysrsbqb0bwk6hbnaw8rljxdmi5"; depends=[BH Rhdf5lib RProtoBufLib]; };
1295  cytomapper = derive2 { name="cytomapper"; version="1.10.1"; sha256="0damlwxjmixrj2civn8wq463l697yh4vy42jdxb2nszmn9m3flkw"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats nnls raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SpatialExperiment SummarizedExperiment svglite svgPanZoom viridis]; };
1296  dStruct = derive2 { name="dStruct"; version="1.4.0"; sha256="0f83w1fgjrlp91ibcb3xxqvbi27rj3a7fxlg5bwlzaq8lg1yrwdn"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; };
1297  daMA = derive2 { name="daMA"; version="1.70.0"; sha256="062nxfry9w674ja3q9zs4df2hvf4wws9jdqpy84g6nb0309vbhqf"; depends=[MASS]; };
1298  dada2 = derive2 { name="dada2"; version="1.26.0"; sha256="1cdfq4qa4kkfkqnkyxyr109hbvj5li396rm3p2b11qm2pxmfd7kc"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; };
1299  dagLogo = derive2 { name="dagLogo"; version="1.36.0"; sha256="0kr61rpw54gjp16nimpj42anr5xn77lnz4bn1dr4d42z7l4ar0zg"; depends=[BiocGenerics biomaRt Biostrings httr motifStack pheatmap UniProt_ws]; };
1300  dasper = derive2 { name="dasper"; version="1.7.0"; sha256="0r7pv3cv48w3kx89x59yjcfxa9p7sc3aac09vm3g2xm9zhfjny81"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; };
1301  dcGSA = derive2 { name="dcGSA"; version="1.26.0"; sha256="05vs7lbdgh1sh7l30ypm86gs2p9a8485qcpdl27y3rqsn4vb97al"; depends=[BiocParallel Matrix]; };
1302  dcanr = derive2 { name="dcanr"; version="1.14.0"; sha256="0vy6ahav3p8vxj3i9sixdpjz40lgvsp5cz9y62xx1kg641406xpy"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; };
1303  dce = derive2 { name="dce"; version="1.6.0"; sha256="1r3dwp0s4hsfzpqa8k0mjffgay5hvz9snsb2ym21n2654k1bg071"; depends=[assertthat dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger magrittr MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang shadowtext tidygraph tidyverse]; };
1304  ddCt = derive2 { name="ddCt"; version="1.54.0"; sha256="1q98qqxh13ibfxc9cclf3cqawax2qbysg193p0bdh878iyrsvc1y"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; };
1305  ddPCRclust = derive2 { name="ddPCRclust"; version="1.18.0"; sha256="0b1pp1njpm8c48kagy7c1qa82bc8wsfxysgjljh4j7fi4alhcxy2"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; };
1306  dearseq = derive2 { name="dearseq"; version="1.10.0"; sha256="1f9hz4jp862jm1grf4qzdvnzp17ri0n1rhfafgkc1j73z6whw1b0"; depends=[CompQuadForm dplyr ggplot2 KernSmooth magrittr matrixStats patchwork pbapply reshape2 rlang scattermore statmod survey tibble viridisLite]; };
1307  debCAM = derive2 { name="debCAM"; version="1.16.0"; sha256="09dm861adbxdy3ncfdxq46wjr4hpn56c66n64xm9gwzkzsrxyc2a"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; };
1308  debrowser = derive2 { name="debrowser"; version="1.26.3"; sha256="0vs7c6241wgpcisxdxg5kdsa4rkwniq0mxz34gn7kmn252kapd3j"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; };
1309  deco = derive2 { name="deco"; version="1.13.0"; sha256="0d4abif3v62cbas6hl7pfw8q8jihh7nsra76k9cm6kz54qw4fbnw"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; };
1310  decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.14.0"; sha256="0agvmgwyk458lhhhspd8243n4897f0q7jf9yqhwsl5wi8011vmqd"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; };
1311  decontam = derive2 { name="decontam"; version="1.18.0"; sha256="0bk7ia2flnxwa99b8mf3xdvap3xqa4pvpsrgbnyapxbaqxr5zf82"; depends=[ggplot2 reshape2]; };
1312  deconvR = derive2 { name="deconvR"; version="1.4.3"; sha256="1jz7q4rv3m85bcvarjhqsyc2330fynb0wr5ajd2qffznczk846xb"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit minfi nnls quadprog rsq S4Vectors tidyr]; };
1313  decoupleR = derive2 { name="decoupleR"; version="2.4.0"; sha256="1872pi2v9gymdpqdhab10ash4b2w8sbk1p635lf0p6s4679syhdi"; depends=[broom dplyr magrittr Matrix purrr rlang stringr tibble tidyr tidyselect withr]; };
1314  deepSNV = derive2 { name="deepSNV"; version="1.44.0"; sha256="051xcg9lx8plbfhiacrv1wsxfac0qqspysq960ppibkf4m8crk81"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; };
1315  deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.12.0"; sha256="1ygsnhrqsr1pa61s7pq7wmyk1i4hcxyylpinnhbav04zjs8rhg1b"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; };
1316  deltaGseg = derive2 { name="deltaGseg"; version="1.38.0"; sha256="1m4jdps2x3qx8mal4ryjffi0ph2kzkpqspfz4dq08mn46qn8nxfi"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; };
1317  demuxmix = derive2 { name="demuxmix"; version="1.0.0"; sha256="0glqwysbz5vx272s38g4zk0d4zzdnhlsc57yv52g2bxi1vij70an"; depends=[ggplot2 gridExtra MASS Matrix]; };
1318  densvis = derive2 { name="densvis"; version="1.8.3"; sha256="03x31dcd6dpb98fg0486xpizc0sk6p9a6b3sfpd6ls226gfj8f68"; depends=[assertthat basilisk irlba Rcpp reticulate]; };
1319  derfinder = derive2 { name="derfinder"; version="1.32.0"; sha256="0v9h3hyfvk72r0d0fx2avmm65dvzb2i06vdx1c3jld8b676ss87r"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; };
1320  derfinderHelper = derive2 { name="derfinderHelper"; version="1.32.0"; sha256="118rjmqy53viczdwj70kaszkpg2r2zbq60k49jg7fqb81prdwy04"; depends=[IRanges Matrix S4Vectors]; };
1321  derfinderPlot = derive2 { name="derfinderPlot"; version="1.32.0"; sha256="1pdfjppzg3l2mh7d29gn22hgkm48bznpalks2jd89wajxkhb6cd2"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; };
1322  destiny = derive2 { name="destiny"; version="3.12.0"; sha256="0rgd723azjrdxv441k96vircqb18w31q0ljhksbdrvcp9qb85r6i"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; };
1323  diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.80.0"; sha256="0k0zd15jlffphg6m3c5jfnn5iilmb1g9sdgjzar4m6yyfzl1m51w"; depends=[minpack_lm]; };
1324  diffHic = derive2 { name="diffHic"; version="1.30.0"; sha256="1rffxh74bfzzi6dm90b7q0hv50pzb1mrmdicz1jrnksjk5hphfap"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; };
1325  diffUTR = derive2 { name="diffUTR"; version="1.6.0"; sha256="104pfcrnkya4pra7ch2dlb2218f1vkp4xk3l8xn8k726kil56z4s"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; };
1326  diffcoexp = derive2 { name="diffcoexp"; version="1.18.0"; sha256="1p7ksn9ly9if8yf4p9x6kya1vh5z68fjgv7acd417k6c1pznzcqf"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; };
1327  diffcyt = derive2 { name="diffcyt"; version="1.18.0"; sha256="10xhvksnnn4m1hly16fwmbr28xgym6a9zkqj8y476jph4wpnhc2s"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; };
1328  diffuStats = derive2 { name="diffuStats"; version="1.18.0"; sha256="1p8v2358kkdj50cbw5vvwkcc1dv470ifcggb5cmq2cqxx2ipf3z5"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; };
1329  diggit = derive2 { name="diggit"; version="1.30.0"; sha256="0w3m7azy7r2bf9z8sdf7lz7jhnzg9hks4zxrjn30yq6hh8qs53gs"; depends=[Biobase ks viper]; };
1330  dir_expiry = derive2 { name="dir.expiry"; version="1.6.0"; sha256="1ix31jcfi3dg12pa0sz4k4izwc9rsydy6krl7f949lkam2g7s5f8"; depends=[filelock]; };
1331  discordant = derive2 { name="discordant"; version="1.22.0"; sha256="1zhnfah6md93d7ksq94xq0462vmcs5gfk1fcs18wwqw3bq967pgb"; depends=[Biobase biwt dplyr gtools MASS Rcpp]; };
1332  distinct = derive2 { name="distinct"; version="1.10.2"; sha256="1basncp2b8srv926rm4c405c0a0djp9lh83x9ja9xiyg4xh3vbv9"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo Rfast scater SingleCellExperiment SummarizedExperiment]; };
1333  dittoSeq = derive2 { name="dittoSeq"; version="1.10.0"; sha256="0sxpwg2cjw70pzdxbdw68nic521w65ryn83mj0pb2m1ncpimin4b"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; };
1334  divergence = derive2 { name="divergence"; version="1.14.0"; sha256="1khxmngdqsvn77hfiyz732q4z268qwk0r9ydmipz25lnddb25p7m"; depends=[SummarizedExperiment]; };
1335  dks = derive2 { name="dks"; version="1.44.0"; sha256="1vg6xlw5ia6r1xycd5hrh6s2nxrkrgi34dsd1kfzhkf11d40ydfh"; depends=[cubature]; };
1336  dmrseq = derive2 { name="dmrseq"; version="1.18.1"; sha256="0djd2r0xzjcyw496wdw2gwzk4wjf3jp639b198x4pc0g0mmgw245"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; };
1337  doppelgangR = derive2 { name="doppelgangR"; version="1.26.0"; sha256="1qfgfvxj44zyqfcj57lphrqgh7yb3lv807bl9xhg7k2gc3rmy5n1"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; };
1338  doseR = derive2 { name="doseR"; version="1.14.0"; sha256="0cpjy8whi7nhpyhyz8k2g70l7rhfpg2xcgclxdasbrj695qy79f0"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; };
1339  dpeak = derive2 { name="dpeak"; version="1.10.0"; sha256="1cnbvi8x3zjfvbsc71gz8pk7x7fglydhnc8msp6c10sd06blpibs"; depends=[BSgenome IRanges MASS Rcpp]; };
1340  drawProteins = derive2 { name="drawProteins"; version="1.18.0"; sha256="1gsa1gkpawg5w869syd1anf9j1xz3vd9fxhs170x0jmplvnykgqc"; depends=[dplyr ggplot2 httr readr tidyr]; };
1341  drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.6.0"; sha256="04y6kh1nw8rlinv33pyavwrvz900283kigjakv5az95fwchc7zap"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; };
1342  dupRadar = derive2 { name="dupRadar"; version="1.28.0"; sha256="107m3y9d123cvh5cxlpd6xibi569jzpj4whn8rsbrmgbrj6qghcr"; depends=[KernSmooth Rsubread]; };
1343  dyebias = derive2 { name="dyebias"; version="1.58.0"; sha256="1jjy1z4f5yg63ds43nrf9gdsq7vsjblfnqc6c12q63l4qgxvbsw5"; depends=[Biobase marray]; };
1344  easier = derive2 { name="easier"; version="1.4.0"; sha256="1fdfn9bs8676l87jhbpm24c1gz6i272syfp00qwzj2491vibnndp"; depends=[BiocParallel coin DESeq2 dorothea dplyr easierData ggplot2 ggpubr ggrepel matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix]; };
1345  easyRNASeq = derive2 { name="easyRNASeq"; version="2.34.0"; sha256="0851zpqhks96l0bqbay15nglycg3l354av77crmbdjgii5573f53"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; };
1346  easyreporting = derive2 { name="easyreporting"; version="1.10.0"; sha256="1aaymshvz3pcpqzjv57f55w8jzvm905w1v7q6kfp4phd79zdvba8"; depends=[rlang rmarkdown shiny]; };
1347  ecolitk = derive2 { name="ecolitk"; version="1.70.0"; sha256="0xvlqfb061a53vqfalz1byrrmc24mdqasm3img1i35izqvxz90bi"; depends=[Biobase]; };
1348  edge = derive2 { name="edge"; version="2.30.0"; sha256="0sqkzmfxnh4zf2lijaizdv4l07qa0fj75axsw76zzsi1pr91yrbn"; depends=[Biobase MASS qvalue snm sva]; };
1349  edgeR = derive2 { name="edgeR"; version="3.40.2"; sha256="0ds34b135qd63dh3cxkp8b28270m50bn1njwr49b8svgcgzz9x09"; depends=[limma locfit Rcpp]; };
1350  eds = derive2 { name="eds"; version="1.0.0"; sha256="1jfv281pwr3ibr9rnnf41jj1sfj25k0yaln1h175flxkvvhnisba"; depends=[Matrix Rcpp]; };
1351  eegc = derive2 { name="eegc"; version="1.24.0"; sha256="1rla8x3w4r7da79kxaijgz804ma3s71xs7hm4xj5ccrvg4rvsr61"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; };
1352  eiR = derive2 { name="eiR"; version="1.38.0"; sha256="0f9s20b219scx6al1rb8hzq79d40amvc7rg31kvdknfadqsjv5v1"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; };
1353  eisaR = derive2 { name="eisaR"; version="1.10.0"; sha256="0ilm97h7rwiz7za9n4dwsvk1r7q0fbb5dbb1z13dwal7c367c2a7"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; };
1354  enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.4.2"; sha256="0xsygfrmms2rzgzs3hqs99ym2ssm07c2cxm9xg6643wq3mxivdny"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; };
1355  enrichTF = derive2 { name="enrichTF"; version="1.14.0"; sha256="17jzm9x86rdqn59gr79kl9af9l0scaz20xnv7b273xpscwrxi139"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; };
1356  enrichplot = derive2 { name="enrichplot"; version="1.18.3"; sha256="0nzcr23m58z3h0n0frxf26z14j7ilcl4fjy7rqm7f2i1wyld70zl"; depends=[aplot DOSE ggnewscale ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 rlang scatterpie shadowtext yulab_utils]; };
1357  ensemblVEP = derive2 { name="ensemblVEP"; version="1.40.0"; sha256="1g7574d813p43qcl82vqw8vd3rn485wi3ckb8b6bkjhw09wikb9r"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; };
1358  ensembldb = derive2 { name="ensembldb"; version="2.22.0"; sha256="1v1in3imqbwak3v9w99l6hq8kihai5xvpgxvg7imna7jn1w8kmji"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; };
1359  epiNEM = derive2 { name="epiNEM"; version="1.22.0"; sha256="1j41l2qm83cdhm56bnzx0wp31yph7shfxr0kav7wc6dqxkjjhjjf"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; };
1360  epialleleR = derive2 { name="epialleleR"; version="1.6.1"; sha256="0b416ibi9y81h7xycj1sxmq344ami3a5mcqac3rzbn3l380kl5ms"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; };
1361  epidecodeR = derive2 { name="epidecodeR"; version="1.6.0"; sha256="0qfb912xsyp4cvblhpwpa22iziwqz39hfnf8x68d23pnfwnb1v74"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; };
1362  epigenomix = derive2 { name="epigenomix"; version="1.38.0"; sha256="0vdrnn2qmcy3znz534m5iynvzw208whcyypw7mhdqvrfzkzb4m4a"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; };
1363  epigraHMM = derive2 { name="epigraHMM"; version="1.6.4"; sha256="137qs09idwrc40379dvl3gmy2dcfhmp2x09rzzslkzkh0nj4ikcn"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; };
1364  epihet = derive2 { name="epihet"; version="1.13.0"; sha256="1p5sgb438yj6h0fv0v17dhz1pl32vai5zcbmgpgagrd5829a6a7r"; depends=[data_table doParallel foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; };
1365  epimutacions = derive2 { name="epimutacions"; version="1.2.0"; sha256="1anpx122fcrwldkv5bz5c1cmf6a7y1ai8pc5wjpch7c0nim4a8xg"; depends=[AnnotationDbi AnnotationHub BiocGenerics BiocParallel biomaRt bumphunter ensembldb epimutacionsData ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges isotree matrixStats minfi purrr reshape2 robustbase rtracklayer S4Vectors SummarizedExperiment tibble TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; };
1366  epistack = derive2 { name="epistack"; version="1.4.0"; sha256="06z380js0hgnps8nkfrk2ay7s8fyqbndipavk5ipihbp80yzmgpx"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors SummarizedExperiment viridisLite]; };
1367  epistasisGA = derive2 { name="epistasisGA"; version="1.0.2"; sha256="09mrj3li34l1a7q6iimxj3zhgh1g7m4nrwag4p6l55i2wznlkz63"; depends=[batchtools BiocParallel data_table ggplot2 igraph matrixStats qgraph Rcpp RcppArmadillo survival]; };
1368  epivizr = derive2 { name="epivizr"; version="2.28.0"; sha256="13y9wc28fkn2zvl68qf1jwxcd3kph98iyfw6p7i7c3ghsphmml56"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
1369  epivizrChart = derive2 { name="epivizrChart"; version="1.20.0"; sha256="1yr03i5da7nwyg750ikm6m10x9w4pi34s19xszg87qh2hd15h2ll"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; };
1370  epivizrData = derive2 { name="epivizrData"; version="1.26.0"; sha256="0g68ncr2gxzb6s98aal7fb64bpbyzfya9bv6b6n0kqv6xvvm88yb"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; };
1371  epivizrServer = derive2 { name="epivizrServer"; version="1.26.0"; sha256="1db4hgnal7lrzp8b3dmsqv8z4ddw0lsgjmivl1s5dihvnmpsj1k8"; depends=[httpuv mime R6 rjson]; };
1372  epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.26.0"; sha256="0g5qpw9kcsrrqi86h0pz4jlz82h3czs34hpxzz0b2bnqrx44ys5m"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; };
1373  erccdashboard = derive2 { name="erccdashboard"; version="1.32.0"; sha256="12wvbikm11kyvy81gyw513q2mjh4vai0l8lwdnaazan1x1k8pgr8"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; };
1374  erma = derive2 { name="erma"; version="1.14.0"; sha256="06zxqzbzb0jrk357900gv1r2n81i49rbmrxla02f879kq2ik9cyd"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; };
1375  esATAC = derive2 { name="esATAC"; version="1.20.0"; sha256="1ndv5102aycv5swi08c9gvy66cpx2p2k18bncbl134y1c9ss86fk"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; };
1376  escape = derive2 { name="escape"; version="1.8.0"; sha256="1wb8876506m5bprzbkp6zfa3mv87qyadkffv6ph5m207ixwx502d"; depends=[BiocParallel broom data_table dplyr ggplot2 ggridges GSEABase GSVA Matrix MatrixGenerics msigdbr patchwork reshape2 rlang SingleCellExperiment stringr SummarizedExperiment UCell]; };
1377  esetVis = derive2 { name="esetVis"; version="1.24.0"; sha256="1vnld99li8a5391k185q0xf5fl00q0k76dk9k95b4nx2zmajs7sv"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; };
1378  eudysbiome = derive2 { name="eudysbiome"; version="1.28.0"; sha256="0q6x3nlvarhgc1fq5j4h7hxq5dcmfm0fgm3lmgz63bcbpsf60n5g"; depends=[Biostrings plyr R_utils Rsamtools]; };
1379  evaluomeR = derive2 { name="evaluomeR"; version="1.14.0"; sha256="0wjmm2wzqprn0v0vn90cc3b3wsa274b305p661fdpsql4714jmrq"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; };
1380  exomeCopy = derive2 { name="exomeCopy"; version="1.44.0"; sha256="11a95rpqzc5502s75ar703bv9hisgfx7yqdf03n0q1qh6ykil35g"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; };
1381  exomePeak2 = derive2 { name="exomePeak2"; version="1.10.0"; sha256="1j8l3q5bq3yb1889vjpk8l9qzrmg7lv38m7jb57cb9q67sflqjzs"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DESeq2 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magrittr mclust Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
1382  extraChIPs = derive2 { name="extraChIPs"; version="1.2.4"; sha256="1jhpzw7ps8bknf3b1pjcpsf5kncm3ia7q5niygvrw3idkbszz2c2"; depends=[BiocIO BiocParallel broom ComplexUpset csaw dplyr edgeR EnrichedHeatmap forcats GenomeInfoDb GenomicInteractions GenomicRanges ggforce ggplot2 ggrepel ggside glue Gviz InteractionSet IRanges limma patchwork RColorBrewer rlang Rsamtools rtracklayer S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect vctrs VennDiagram]; };
1383  fCCAC = derive2 { name="fCCAC"; version="1.24.0"; sha256="1r4rdbv1xv8rwsna8w89fzd76hzspf825fxzcn475ll31gmsxsrv"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; };
1384  fCI = derive2 { name="fCI"; version="1.28.0"; sha256="1jiws5q3ppq0z0s71nhb6fs63470v2di45y0gdf7anjnpxgjcjq9"; depends=[FNN gtools psych rgl VennDiagram zoo]; };
1385  fabia = derive2 { name="fabia"; version="2.44.0"; sha256="1fjysjnanjpaywcb4jk8n66mjc3ffn4jscvwqfkpjh7d757xc716"; depends=[Biobase]; };
1386  factDesign = derive2 { name="factDesign"; version="1.74.0"; sha256="1wimcf0xnrpfahda9lj90xqcnq76yw7swbgasrdinay37a3dv0ki"; depends=[Biobase]; };
1387  factR = derive2 { name="factR"; version="1.0.0"; sha256="1ql328w2g6ds74vby36h4d9c7drwby2ah82mqgkjbqw01qr6gk75"; depends=[BiocGenerics BiocParallel Biostrings crayon data_table dplyr drawProteins GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges pbapply purrr RCurl rlang rtracklayer S4Vectors stringr tibble tidyr wiggleplotr XML]; };
1388  famat = derive2 { name="famat"; version="1.8.0"; sha256="1l54ggmqbwj0p3zwln237pggalykmkd46jddaz85gvfhv664bvfn"; depends=[BiasedUrn clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr mgcv ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; };
1389  farms = derive2 { name="farms"; version="1.50.0"; sha256="1zd5f6prz2g00nvchfx4zaw3v722dn9149y205n3c0zv5q6p4w70"; depends=[affy Biobase MASS]; };
1390  fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.34.0"; sha256="0c85gwdbkw6z8xli3c7q6smwpalllr3ad4x5j40mjndnqrl0pzmm"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; };
1391  fastreeR = derive2 { name="fastreeR"; version="1.2.0"; sha256="04srd57vv4hhrqbysjh0v9cdhchixif4rkl10aqfjflyw72q5his"; depends=[ape data_table dynamicTreeCut R_utils rJava stringr]; };
1392  fastseg = derive2 { name="fastseg"; version="1.44.0"; sha256="1m1x7xmbxwa15vzd45h16pnib944f20pwinx1pyhba5hcngkikfi"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; };
1393  fcScan = derive2 { name="fcScan"; version="1.12.0"; sha256="0z83ncjxw9x8nvc6pncrvpf6lmamvgrv56j96s1f0x9jydk18chy"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; };
1394  fcoex = derive2 { name="fcoex"; version="1.12.0"; sha256="01k8v41yqrlcq8x9aaxjfxd477g219jlawnjm2c6k34028ybsc52"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; };
1395  fdrame = derive2 { name="fdrame"; version="1.70.0"; sha256="1p382fak15w2ny5kbvlwdl8iyi28y1avrsl0xk0ds4a0njljxp06"; depends=[]; };
1396  fedup = derive2 { name="fedup"; version="1.6.0"; sha256="0x0y32zr2h0x8ziv6z0q3dyalpbc4xbd3axqgdqf70mapf8wa5gc"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; };
1397  ffpe = derive2 { name="ffpe"; version="1.42.0"; sha256="0r0xw11c14bkzwis8ppfm8s6mw6k9fx14bnp4r02bcjgq5ih1jvq"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; };
1398  fgga = derive2 { name="fgga"; version="1.6.0"; sha256="18c2klg52kmnx0rrb3n0y12l1xq9yl0krjpzifb3i1gl7k66clcf"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; };
1399  fgsea = derive2 { name="fgsea"; version="1.24.0"; sha256="1frl5mchbrgqyxxdlw76qqq5i8vv2fdmy8xl8h8c8cvvmlz393qk"; depends=[BH BiocParallel cowplot data_table fastmatch ggplot2 Matrix Rcpp]; };
1400  fishpond = derive2 { name="fishpond"; version="2.4.1"; sha256="0kc1xzq03kz548rfinxhc7gxm6021502b6v7bg2har0aq4vx79ml"; depends=[abind GenomicRanges gtools IRanges jsonlite Matrix matrixStats qvalue S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; };
1401  flagme = derive2 { name="flagme"; version="1.54.0"; sha256="112vib2g3cvniqn800pn2ifalp5q2l1l7mvqfq8zhwp64i6qxivm"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; };
1402  flowAI = derive2 { name="flowAI"; version="1.28.0"; sha256="18zrlnjw89iglxhw65ys8x4r44pdzp5chrgwx7w44sh7yd8576g9"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; };
1403  flowBeads = derive2 { name="flowBeads"; version="1.36.0"; sha256="1ng2c0vm2qldipzjnks2qyv9ngwc489jwqfsa4kfiyvhm5dwm1hw"; depends=[Biobase flowCore knitr rrcov xtable]; };
1404  flowBin = derive2 { name="flowBin"; version="1.34.0"; sha256="1d6bkidvxw76jj8c64d2r0bggxss3xyy97w3qrhix8613w63adcs"; depends=[BiocGenerics class flowCore flowFP limma snow]; };
1405  flowCHIC = derive2 { name="flowCHIC"; version="1.32.0"; sha256="18mcywl4857wmka63rcnvp2xvh8wj5r8gvbsri9a3f4190wg8yn9"; depends=[EBImage flowCore ggplot2 hexbin vegan]; };
1406  flowCL = derive2 { name="flowCL"; version="1.35.0"; sha256="1jxr0zn3fgm5nqishssxh332mmxfz3fc9zgshn0lbq4avxc2x128"; depends=[graph Rgraphviz]; };
1407  flowClean = derive2 { name="flowClean"; version="1.36.0"; sha256="1wqwq8fw0dk78l43p4cjzll3psc0d4mg7gjckddvpmzlg6w4ha3k"; depends=[bit changepoint flowCore sfsmisc]; };
1408  flowClust = derive2 { name="flowClust"; version="3.36.1"; sha256="1r27nm5dxlhl5rk96dkjfx8326bvdgx55xg4w2zji3m49x9db2gs"; depends=[Biobase BiocGenerics flowCore graph]; };
1409  flowCore = derive2 { name="flowCore"; version="2.10.0"; sha256="0j0ryyz3vcih964is5gdm2jp39ssdli9q6r03q6rj9nwzplq5asj"; depends=[BH Biobase BiocGenerics cpp11 cytolib matrixStats Rcpp RProtoBufLib S4Vectors]; };
1410  flowCut = derive2 { name="flowCut"; version="1.8.0"; sha256="0p66wcr940m5nvl024izqn3w0x6zmp0n7j43xj70arfcxrxp9gxd"; depends=[Cairo e1071 flowCore flowDensity]; };
1411  flowCyBar = derive2 { name="flowCyBar"; version="1.34.0"; sha256="1nbg49s18mxvr5pzv4lx4hvdrwxn5spagxn71zid5kgk13f142a6"; depends=[gplots vegan]; };
1412  flowDensity = derive2 { name="flowDensity"; version="1.32.0"; sha256="1gflq7s7akfjha7ijddgh9qshzwi1yhgp2s5p6gll0rsfaicaxs9"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; };
1413  flowFP = derive2 { name="flowFP"; version="1.56.3"; sha256="04f67vnn2ccxp8mw2sk2riqh0v4hk46fz1i66jsdp6j1vd650r7y"; depends=[Biobase BiocGenerics flowCore flowViz]; };
1414  flowGraph = derive2 { name="flowGraph"; version="1.6.0"; sha256="1srpzkvk69v90bqxz9mivfp69zvn45x6jbgvfnxwq0yz3s6x95is"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; };
1415  flowMap = derive2 { name="flowMap"; version="1.36.0"; sha256="11dvjmbyv46l55cp4jklqwx4000xhc3pxmwrpa1z2sbladmd9hiq"; depends=[abind ade4 doParallel Matrix reshape2 scales]; };
1416  flowMatch = derive2 { name="flowMatch"; version="1.34.0"; sha256="1c0qxypv5814m9fwrpzl44hii8fcn35xmj6wyimclnar3q0r4rs6"; depends=[Biobase flowCore Rcpp]; };
1417  flowMeans = derive2 { name="flowMeans"; version="1.58.0"; sha256="1hmr2i5svg1wvdgqhnp25k1c21p2pdd0ia9py5kp9sm5qvc9vngw"; depends=[Biobase feature flowCore rrcov]; };
1418  flowMerge = derive2 { name="flowMerge"; version="2.46.0"; sha256="1sr1icmkd27k7zzykwml44aqkk6fk1p697ndw9qsw6vvv0zp4d1n"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; };
1419  flowPeaks = derive2 { name="flowPeaks"; version="1.44.0"; sha256="0n3sbb9acvj5srrlxv58n858s9nns62y0pj46pplx5gv7i8hxbcp"; depends=[]; };
1420  flowPloidy = derive2 { name="flowPloidy"; version="1.24.0"; sha256="0x6cd0ng39jgwd3hxwfwqkk3grqb3dalv84yyp7cfc0y64nkpv64"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; };
1421  flowPlots = derive2 { name="flowPlots"; version="1.46.0"; sha256="1vqx2qww5y5p1mcv99qlm1k077gnd4dwmi83ax31rz5kqip2g7b0"; depends=[]; };
1422  flowSpecs = derive2 { name="flowSpecs"; version="1.12.0"; sha256="1xf0mf9s0srn7ch5hkl37d5igp20pi8jl52b06azdblqsgv3h0cr"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; };
1423  flowStats = derive2 { name="flowStats"; version="4.10.0"; sha256="10xq0rfnshvam2yh34566ywmsby44aa1fg8wqwmllm202rhcgl2p"; depends=[Biobase BiocGenerics cluster corpcor fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mnormt ncdfFlow RColorBrewer rrcov]; };
1424  flowTime = derive2 { name="flowTime"; version="1.22.2"; sha256="0qmd2a50qy1fldqhp25nzafxi0jv7x2v2fhpmfckwn0qwkg3splp"; depends=[dplyr flowCore magrittr plyr rlang tibble]; };
1425  flowTrans = derive2 { name="flowTrans"; version="1.50.0"; sha256="0adhha052by515v43z5kvcr4hzv6z1mhx3jry1x4x75zj51wj8pm"; depends=[flowClust flowCore flowViz]; };
1426  flowVS = derive2 { name="flowVS"; version="1.30.0"; sha256="0sv05dzcik2qqvja0ag3ag3qpg5r89rzynil81z5m3b62xq1i6nz"; depends=[flowCore flowStats flowViz]; };
1427  flowViz = derive2 { name="flowViz"; version="1.62.0"; sha256="0yz2b3l0bv5i7vrr893wrs3jl215i17m2hr92iisdc6mh9i0lpz8"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; };
1428  flowWorkspace = derive2 { name="flowWorkspace"; version="4.10.1"; sha256="0jmbfclkfm0n2mshk94906kivii7awlskf7l7ydn8ki8wrpzxqg4"; depends=[BH Biobase BiocGenerics cpp11 cytolib data_table DelayedArray dplyr flowCore ggplot2 graph matrixStats ncdfFlow RBGL Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; };
1429  flowcatchR = derive2 { name="flowcatchR"; version="1.32.0"; sha256="1flq3n3j57yxq00dqqwl45xxacw7qgn2raqmnczgnsflihyysldz"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; };
1430  fmcsR = derive2 { name="fmcsR"; version="1.40.0"; sha256="00xi01wz61ip8pnbrpnpp8hncb8gyiw69qkbg0cl425rv6qjb3mr"; depends=[BiocGenerics ChemmineR RUnit]; };
1431  fmrs = derive2 { name="fmrs"; version="1.8.0"; sha256="1nw7ibbqw30p9mj3vi7pd3ixry6fwai02mg3rys48bld0aipw21l"; depends=[survival]; };
1432  fobitools = derive2 { name="fobitools"; version="1.6.0"; sha256="0i3bdg22750hf9l3hkgz5vjq0ysvr99571zrdabmq7m54788fl9w"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; };
1433  frenchFISH = derive2 { name="frenchFISH"; version="1.10.0"; sha256="1iylq196bl7ysypvcfqpp5gz5c8ax79p3icbyl31cxmj9ssf486a"; depends=[MCMCpack NHPoisson]; };
1434  frma = derive2 { name="frma"; version="1.50.0"; sha256="0pn8b7fgz1ys3pm603ya6nkngbc9q8dsx3zxijdzf1v0b1sm1fi1"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; };
1435  frmaTools = derive2 { name="frmaTools"; version="1.50.0"; sha256="0j6z94icgs9j1ryxr1a2fv9p14nzl3zy695fbc6d87gm0ccjy745"; depends=[affy Biobase DBI preprocessCore]; };
1436  funtooNorm = derive2 { name="funtooNorm"; version="1.22.0"; sha256="0qf2c28r6jv4cf8qpag4zi8k64b5x3mqs9jc6g8iy9v6323vdcpy"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; };
1437  gCrisprTools = derive2 { name="gCrisprTools"; version="2.4.0"; sha256="0rmxrvb97844qjis945drmk3z63ks89c587ysxc1ldka503za7rj"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; };
1438  gaga = derive2 { name="gaga"; version="2.44.0"; sha256="19sjqlrjxcphs5a3mzwr0a7a504ap2zpwnzlrzmhad7v1dgicn5g"; depends=[Biobase coda EBarrays mgcv]; };
1439  gage = derive2 { name="gage"; version="2.48.0"; sha256="08qvg1cmrln7w5z33r81kz1zjs8fcj3qbxm1crbsazvb6gdpqyyi"; depends=[AnnotationDbi GO_db graph KEGGREST]; };
1440  gaggle = derive2 { name="gaggle"; version="1.66.0"; sha256="16w40jkaz1nhvzwg3q62mzigh9kpvhhyky1bnz2bwjbl49fspvqg"; depends=[graph rJava RUnit]; };
1441  garfield = derive2 { name="garfield"; version="1.26.0"; sha256="0cm2lg9qsnlp60i3rc2c4d6xc73r285rznkgdkw646c62s48lhs8"; depends=[]; };
1442  gcapc = derive2 { name="gcapc"; version="1.22.0"; sha256="1n3g6fvj86q9n6q3ccmj6ns0gdd4sqfdm43sh1hpxkid9v88209y"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; };
1443  gcatest = derive2 { name="gcatest"; version="1.28.2"; sha256="1f2bp16x7ji9sh5kk150w57gqpbrisrb0xlkjv8wnd63j0vnng3l"; depends=[lfa]; };
1444  gcrma = derive2 { name="gcrma"; version="2.70.0"; sha256="0a3wjwjgjkpmfvgg0b4jc1rkwzsqrjbaziydjfnkll4rw9xcavy1"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; };
1445  gdsfmt = derive2 { name="gdsfmt"; version="1.34.1"; sha256="1sx7yw44djrnc6km8fip3w3vclkgz5s0w6ibp8lpvmjcay8nv2sx"; depends=[]; };
1446  geNetClassifier = derive2 { name="geNetClassifier"; version="1.38.0"; sha256="1ahlml1ssjmg126ki1phdprq4v0nawzbbfq8jray5ypaj32qx3r2"; depends=[Biobase e1071 EBarrays minet]; };
1447  gemini = derive2 { name="gemini"; version="1.12.0"; sha256="12p44p3nzn32am2m609k64iy4lfj42dygdxmb770ld8lpihhrkmz"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; };
1448  gemma_R = derive2 { name="gemma.R"; version="1.0.1"; sha256="0m6mmv55ghvwqw462ym335bcng61c52d84irkn5xwq6yzr2dgxsa"; depends=[Biobase bit64 data_table glue httr jsonlite lubridate magrittr memoise rappdirs rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; };
1449  genArise = derive2 { name="genArise"; version="1.74.0"; sha256="19yrrmqb83zg075cbwfb2k3s96fvhl19bhjc5v9xva12k3n14dxh"; depends=[locfit tkrplot xtable]; };
1450  genbankr = derive2 { name="genbankr"; version="1.26.0"; sha256="06nkwpsaqrmja9731d3i420f1i8v3vzq20ih44cwxnd7a0zja288"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; };
1451  geneAttribution = derive2 { name="geneAttribution"; version="1.24.0"; sha256="00imcb2slqfflcm3jalcjspqv8m9kyfvv1m1nxlxbdaa4qgrn9yx"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; };
1452  geneClassifiers = derive2 { name="geneClassifiers"; version="1.22.0"; sha256="03ccb749frf3pp2rqcyf1jly7rpld3nrg61507xvk3x841nxnas4"; depends=[Biobase BiocGenerics]; };
1453  geneRecommender = derive2 { name="geneRecommender"; version="1.70.0"; sha256="0iki40fg9mdkj131sc3f4wj6b4mz0jidpbzyxskcdm4l81ar8amv"; depends=[Biobase]; };
1454  geneRxCluster = derive2 { name="geneRxCluster"; version="1.34.0"; sha256="0amxn2gw2k4hvhxy446v7f4s4jcgm5mrv1l1afv3svmlpq57llrb"; depends=[GenomicRanges IRanges]; };
1455  geneXtendeR = derive2 { name="geneXtendeR"; version="1.24.0"; sha256="0b0p0p00261g296a0bwzl9fnmd5gky8l3dd33l8a4v5p08kfciz9"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; };
1456  genefilter = derive2 { name="genefilter"; version="1.80.3"; sha256="047p84qxfqqm0d0ik7fxcs37fmg0yazsn9rz7h4g24cksb45p689"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; };
1457  genefu = derive2 { name="genefu"; version="2.30.0"; sha256="0s10bz0iis6kwbb9ss9m0bz7al52yq9r0i9gcn8zvzb3533zr5mk"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; };
1458  geneplast = derive2 { name="geneplast"; version="1.24.1"; sha256="0157ja72p3izzy9d6qpk3yfxq9qmr8a4lh97wrjfk944h32m8w2l"; depends=[ape data_table igraph snow]; };
1459  geneplotter = derive2 { name="geneplotter"; version="1.76.0"; sha256="094v4skdvsnc7bp3acj801ih022w9k96f2b857326vd19khz0ava"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; };
1460  genoCN = derive2 { name="genoCN"; version="1.50.0"; sha256="1m53f6yd692rsrhhr1kq4mwv13kmjlkq8cvcbkn736vbpq07j743"; depends=[]; };
1461  genomation = derive2 { name="genomation"; version="1.30.0"; sha256="098ldnh45f48145jfsbdw5dqv5yiqkfci1fy6h6gjz7nh3dvnil5"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; };
1462  genomeIntervals = derive2 { name="genomeIntervals"; version="1.54.0"; sha256="0kl280hdqiqkzb21l4z49jkidvr8s5bzdxpl38ci8ljia5imi38y"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; };
1463  genomes = derive2 { name="genomes"; version="3.28.0"; sha256="1lsmcz2l4mv62q7w2rncb0m92jwhz4p05yfqqk0apjv1hffc3y9j"; depends=[curl readr]; };
1464  genomicInstability = derive2 { name="genomicInstability"; version="1.4.0"; sha256="0553wd872zlfwqily7pww9frpn40jqp8i0hgg8sf1qmjn9apj24f"; depends=[checkmate mixtools SummarizedExperiment]; };
1465  genotypeeval = derive2 { name="genotypeeval"; version="1.30.0"; sha256="0mi1d86i4v8gafwszy978n61s5pszrsmbh1in4nggdqwvwnvkqnl"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; };
1466  gep2pep = derive2 { name="gep2pep"; version="1.18.0"; sha256="1bijky1qjp5nw3w27nsl9w4bq41zqx98ki7w2s3mz0qz6hwahnw1"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; };
1467  gespeR = derive2 { name="gespeR"; version="1.30.0"; sha256="0mrfc7mfb7q2vlw4bppjgpgna4h7s3sidiv5lpjqxbi6cmva6ka0"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; };
1468  getDEE2 = derive2 { name="getDEE2"; version="1.8.0"; sha256="1yclldn6hfjdbb5gc6q2kdfz65hxx2ija3apramvhwcbq2h1ygpp"; depends=[htm2txt SummarizedExperiment]; };
1469  geva = derive2 { name="geva"; version="1.6.0"; sha256="00vkg5gil1jr1hv1swccxhs9iyrn2vjrggrf04y6svfqcs3h9hh8"; depends=[dbscan fastcluster matrixStats]; };
1470  ggbio = derive2 { name="ggbio"; version="1.46.0"; sha256="1gm3y1nx0ah8wcrg2dh1xd688izm2sijz7bhgsasxckmmkmkp60g"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; };
1471  ggcyto = derive2 { name="ggcyto"; version="1.26.4"; sha256="1pj1v0bhvckvwn1p826phskqz9lv71c1913cz5w0fd87dzdbpzpj"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; };
1472  ggmanh = derive2 { name="ggmanh"; version="1.2.0"; sha256="1igvm20k3y0kfa5ia45ynyp9d90c5czjbdz95dvj1gzjy7ql5c4j"; depends=[gdsfmt ggplot2 ggrepel RColorBrewer rlang scales SeqArray]; };
1473  ggmsa = derive2 { name="ggmsa"; version="1.4.0"; sha256="0pqxf7dlb403xj4d5s683k5zdakwgq3ic98lk43dl0ib19mg3dih"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 ggtree magrittr R4RNA RColorBrewer seqmagick statebins tidyr]; };
1474  ggspavis = derive2 { name="ggspavis"; version="1.4.0"; sha256="00s1xadh164adziszqjfzcznjjpbcf805xshp0c8qr24g0d86jim"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
1475  ggtree = derive2 { name="ggtree"; version="3.6.2"; sha256="177nq6arhxp0x6zsf2c6cn3xxwfk65dihbpni6mb9ifgnmfqdjmx"; depends=[ape aplot cli dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; };
1476  ggtreeDendro = derive2 { name="ggtreeDendro"; version="1.0.0"; sha256="1i562x3f28wm5ac5izzpriwh9ywqq40zbbv5g70vjyqcwsh35wh4"; depends=[ggplot2 ggtree tidytree]; };
1477  ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.8.1"; sha256="0sbjkljv8zj5plr4az5hiz2m0bjnqfgrwcd02rmlrnxhbzj2kcj6"; depends=[cli ggnewscale ggplot2 ggtree rlang tidytree]; };
1478  girafe = derive2 { name="girafe"; version="1.50.0"; sha256="0kv6s77fs6rgrrv5hcr8qc86ida0qrwcfzby2xcyris0fk56k5sc"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; };
1479  glmGamPoi = derive2 { name="glmGamPoi"; version="1.10.2"; sha256="1ihjqzdhx6k99gdd4556xxn9822sblg6vmblcmbzml01bhv6xzar"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array MatrixGenerics matrixStats Rcpp RcppArmadillo rlang SingleCellExperiment SummarizedExperiment]; };
1480  glmSparseNet = derive2 { name="glmSparseNet"; version="1.16.0"; sha256="1573cclc2qn4mhw24k7ab75a9inc7z205b0j85favmvv1zcyqal4"; depends=[biomaRt digest dplyr forcats futile_logger futile_options ggplot2 glmnet glue httr Matrix MultiAssayExperiment readr reshape2 stringr SummarizedExperiment survminer]; };
1481  globalSeq = derive2 { name="globalSeq"; version="1.26.0"; sha256="0l4n755v8gxxrxqgzhks4yz06rr3m703zaaavh0fyryk2mnijpip"; depends=[]; };
1482  globaltest = derive2 { name="globaltest"; version="5.52.1"; sha256="1g5dv3bw0fj8sq0hsr8c7nh6n1rzvx1bisqlyqjqq3f8lsyb51kb"; depends=[annotate AnnotationDbi Biobase survival]; };
1483  gmapR = derive2 { name="gmapR"; version="1.40.0"; sha256="03fi4ld4f102xch75z6s67kb27mvyg5zik5n59ni4zdiipi9i2cl"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
1484  gmoviz = derive2 { name="gmoviz"; version="1.10.0"; sha256="0vafsa3i8z08bfl4x0adlg3bf0jdw4a7zb459cw7bfdkkw8g4850"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; };
1485  goProfiles = derive2 { name="goProfiles"; version="1.60.0"; sha256="0wkvb79lb309ff6iv8p23z9rwrrv7qha86ngs0ag670mpm9yra5j"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; };
1486  goSTAG = derive2 { name="goSTAG"; version="1.22.0"; sha256="06wp18i25c35w651gz9xl9x4yklx52vrz6r5pr5z15pgwjc0n5hy"; depends=[AnnotationDbi biomaRt GO_db memoise]; };
1487  goSorensen = derive2 { name="goSorensen"; version="1.0.0"; sha256="0vv8wx6213wawr9zvy0x8nlr4cj6ccpgfasynn7qi85hmsx3ygfm"; depends=[clusterProfiler GO_db goProfiles org_Hs_eg_db]; };
1488  goTools = derive2 { name="goTools"; version="1.72.0"; sha256="1h9aj2n8w7z04jjhd8gabmsvr4ib0vhms3iiry00g3xp68yc8zdg"; depends=[AnnotationDbi GO_db]; };
1489  goseq = derive2 { name="goseq"; version="1.50.0"; sha256="0x89lv84l3qcahca54njcza326553zij2xyagy18mwlprdrq4iy8"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; };
1490  gpls = derive2 { name="gpls"; version="1.70.0"; sha256="0kxk22l9rm4kxlf0mr4zb01nr2vlia1g4xq9fsd6fdn6d535k1ci"; depends=[]; };
1491  gpuMagic = derive2 { name="gpuMagic"; version="1.14.0"; sha256="02ksc7cls7q8yrcsr0i15i6rb3nyzxapafg0zkwgj55x28gy0q9x"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; };
1492  granulator = derive2 { name="granulator"; version="1.6.0"; sha256="0im7xhvdxm97hda6zwj22xlcinyjqi2jfykw7mi091z2d0by7rln"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; };
1493  graper = derive2 { name="graper"; version="1.14.2"; sha256="0zj9mnx56as37f94cpblq0jmcdgn5rl942n1hzlf7ppri9a9i7r8"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; };
1494  graph = derive2 { name="graph"; version="1.76.0"; sha256="1hdbxjvgkxb9m341i9qbskb41g2z8qifkhgkpj2xb20s2dnxn3cc"; depends=[BiocGenerics]; };
1495  graphite = derive2 { name="graphite"; version="1.44.0"; sha256="0gkjab12ncag1vslc5bwlr0m5ac3ifq9ka5nfq7ckrpns98s7k0w"; depends=[AnnotationDbi graph httr purrr rappdirs rlang]; };
1496  groHMM = derive2 { name="groHMM"; version="1.32.0"; sha256="1as3k6avyc4l7saw02x0ql68c06msvs1s824vc1xg6lkdsi4lsyc"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; };
1497  gscreend = derive2 { name="gscreend"; version="1.12.0"; sha256="0d8ffg4mis6hy4xx6f8ry5vxd2cilzxws56jqpv8diw0dnvfv1dz"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; };
1498  gsean = derive2 { name="gsean"; version="1.18.0"; sha256="0gvir3pdshsv22v2q619lzsi2wwyb5bql3vsgmzc3z1nj6jij0zr"; depends=[fgsea PPInfer]; };
1499  gtrellis = derive2 { name="gtrellis"; version="1.30.0"; sha256="09f20qam59iwr48g854b7ydbsbqy90mdy83i2i0am4gybv5isgqg"; depends=[circlize GenomicRanges GetoptLong IRanges]; };
1500  gwascat = derive2 { name="gwascat"; version="2.30.0"; sha256="0sj51cli1p8k7z1nl5rfswjlzrk9cqnpr1a1pr618gk74kfwqf5a"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; };
1501  gwasurvivr = derive2 { name="gwasurvivr"; version="1.16.0"; sha256="0rrcykwn922wwqrz6gayvwid8hpfqms14cgzvnqh9gcwgcjjrica"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; };
1502  h5vc = derive2 { name="h5vc"; version="2.32.0"; sha256="09dczq9yl28zy2jih24blxlpsmkphwaks0hlp3yl5ibfwdnihnk9"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; };
1503  hapFabia = derive2 { name="hapFabia"; version="1.40.0"; sha256="09c5ra1smy38w75dqzsamynp8xny6hzb75vn1207hq7z5km8lb9c"; depends=[Biobase fabia]; };
1504  hca = derive2 { name="hca"; version="1.6.0"; sha256="1z20rlyc4920hdx0npqhbpmplawlwz8d5gyy5rf95g84d6klxs7c"; depends=[BiocFileCache digest dplyr DT httr jsonlite miniUI readr shiny tibble tidyr]; };
1505  heatmaps = derive2 { name="heatmaps"; version="1.22.0"; sha256="01jvfjfh3ji0f6wf3xwmz0abpm23x1aan7dw0nycm5cm0bxjwgh4"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; };
1506  hermes = derive2 { name="hermes"; version="1.2.0"; sha256="1akh46jvhl63lva8jfpqzckczvdw0yjpkw5c0qnvgxl3sajvbw0n"; depends=[assertthat Biobase BiocGenerics biomaRt checkmate circlize ComplexHeatmap DESeq2 dplyr edgeR EnvStats forcats GenomicRanges ggfortify ggplot2 ggrepel IRanges lifecycle limma magrittr matrixStats MultiAssayExperiment purrr R6 Rdpack rlang S4Vectors SummarizedExperiment tidyr]; };
1507  hiAnnotator = derive2 { name="hiAnnotator"; version="1.32.0"; sha256="05l07ycm72i2qv7wlbssk1wh3ly961x444hwbpaii8fm65x5a0k2"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; };
1508  hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.34.0"; sha256="00m0vkdb552nw0yn6wx01wdvf6g8i33q0wl4ishscmvcwld803vj"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; };
1509  hierGWAS = derive2 { name="hierGWAS"; version="1.28.0"; sha256="04jbrin7jyj72bfxp3rgmmr796gy2v3mvnb593w9ldq5620az20b"; depends=[fastcluster fmsb glmnet]; };
1510  hierinf = derive2 { name="hierinf"; version="1.16.0"; sha256="0f8m0wbghwjlavkj4r089z7xix27jnc57d0sddw4hamv9hi6zm95"; depends=[fmsb glmnet]; };
1511  hipathia = derive2 { name="hipathia"; version="2.14.0"; sha256="0ghav95b2cv0y61m14yq332yzrjhipm01dnc9qvb9zqdnwwqhdj1"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; };
1512  hmdbQuery = derive2 { name="hmdbQuery"; version="1.18.0"; sha256="12q6cr8fwl298vd2v3cdzm6cjkmwfssn4h1cy3f7ky1n7dkpnw30"; depends=[S4Vectors XML]; };
1513  hopach = derive2 { name="hopach"; version="2.58.0"; sha256="06qpg76d8ycpgvxfblz4va7i2f705rv3bi19c2lw84vnkmhzdcf6"; depends=[Biobase BiocGenerics cluster]; };
1514  hpar = derive2 { name="hpar"; version="1.40.0"; sha256="1dls59d2ysk8ngk5c6nx7xqgc2iygbdlzf88gccf2wm8zhy8m3f4"; depends=[]; };
1515  hummingbird = derive2 { name="hummingbird"; version="1.8.0"; sha256="1glnxhqvdxb1n8xk3pjh68nyg5vqvxszd7q24qir380x8d9ncrpg"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; };
1516  hypeR = derive2 { name="hypeR"; version="1.14.0"; sha256="0vni4s1rvdjm4l5jaa2kq0i1z87jw09vd1pw63aa0v6qk1vr96vc"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; };
1517  hyperdraw = derive2 { name="hyperdraw"; version="1.50.0"; sha256="1fl4ia2jskvmbwk0y1wd0x4dgqph0av7bx2zffrvd1a5ppcjmsra"; depends=[graph hypergraph Rgraphviz]; };
1518  hypergraph = derive2 { name="hypergraph"; version="1.70.0"; sha256="1jvnvzjivjwqxh19c3g37kpyl6i6mxw99ma3ypjjgxzx898nsg45"; depends=[graph]; };
1519  iASeq = derive2 { name="iASeq"; version="1.42.0"; sha256="1v7ax7847ygdy6mxwbg6awy52dms0nirbyn1z0cwsjssvi4q4hd5"; depends=[]; };
1520  iBBiG = derive2 { name="iBBiG"; version="1.42.0"; sha256="0yhvp522s23y6239v340ilbyaii5qfj7vc76x0j6c56yd807zmhb"; depends=[ade4 biclust xtable]; };
1521  iBMQ = derive2 { name="iBMQ"; version="1.38.0"; sha256="1k08dslcyfyzyb9zn1r0ddnvrrp2370n4w3762xz1zdsfs7h551k"; depends=[Biobase ggplot2]; };
1522  iCARE = derive2 { name="iCARE"; version="1.26.0"; sha256="1x47wy0spsfv58b96ys2ym0f3ivs6b68a2h82wyp5viyq7imphbn"; depends=[gtools Hmisc plotrix]; };
1523  iCNV = derive2 { name="iCNV"; version="1.18.0"; sha256="1j1cvk42l9p2r6n6zhijw26ydwki6fpj8d70592mqhv9m38ms9i3"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; };
1524  iCOBRA = derive2 { name="iCOBRA"; version="1.26.0"; sha256="0mh7arn5rv26picz05ywil5ynras91xv6diwh47s9ip75vp9s3cy"; depends=[dplyr DT ggplot2 limma markdown reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; };
1525  iCheck = derive2 { name="iCheck"; version="1.28.0"; sha256="0aa76j1vlrhyfppqa91dfzrh5ljxx7zylycrmjy35hx0ja0zck00"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; };
1526  iChip = derive2 { name="iChip"; version="1.52.0"; sha256="1c3l24v0hm2dnidg8l9v6gqwrm51pqhw3mjg4x1a4vy1rq3j6jrj"; depends=[limma]; };
1527  iClusterPlus = derive2 { name="iClusterPlus"; version="1.34.3"; sha256="0d7qsdjry5avflrvgjj287xqn9dr54pqiqvpgywzdmdwn82m0dfp"; depends=[]; };
1528  iGC = derive2 { name="iGC"; version="1.28.0"; sha256="1knvx7b4h85ldqxq3a54fm05axb8zcvqm5by98wsdz4h6dzikxjh"; depends=[data_table plyr]; };
1529  iPAC = derive2 { name="iPAC"; version="1.42.0"; sha256="0dsmjqipj871ygjzc8js5xvy5xpfj22853c4a3wdf2qhriw1c0ms"; depends=[Biostrings gdata multtest scatterplot3d]; };
1530  iPath = derive2 { name="iPath"; version="1.4.2"; sha256="1dv7ipc8vnzv8qwj9ywgkisyyfacgv74sniac07vbsk7ca6vk79z"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; };
1531  iSEE = derive2 { name="iSEE"; version="2.10.0"; sha256="1l2bwqk7ivj79xxjzc0hc3x5v5h19zpk9pa0vbpb5p64z1pshnjn"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; };
1532  iSEEhex = derive2 { name="iSEEhex"; version="1.0.0"; sha256="06n9ls71rg2kilr3kjlwwk5rnj8v68svjmzcr2hg0gwwyaxcyk9w"; depends=[ggplot2 hexbin iSEE shiny SummarizedExperiment]; };
1533  iSEEhub = derive2 { name="iSEEhub"; version="1.0.0"; sha256="1ggkm7931axcl0464h0d5cnf5lbd6nx3fbac1zrlkwyb2lym7wi8"; depends=[AnnotationHub BiocManager DT ExperimentHub iSEE rintrojs S4Vectors shiny shinydashboard shinyjs SingleCellExperiment SummarizedExperiment]; };
1534  iSEEu = derive2 { name="iSEEu"; version="1.10.1"; sha256="04c2ha4s4fvk30qm65shzzvymiilj0y85qdjc3lw4c90jfvnf44q"; depends=[colourpicker DT ggplot2 IRanges iSEE iSEEhex S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; };
1535  iSeq = derive2 { name="iSeq"; version="1.50.0"; sha256="1h0da0298g2lvvqbys3jh2acjjzh1dvivfpl07g319nafxkfsi1q"; depends=[]; };
1536  iasva = derive2 { name="iasva"; version="1.16.0"; sha256="192cpnpyyjf16pqnzj70nsqkzv6wp4acia7fciz1zvz5jhncrsva"; depends=[BiocParallel cluster irlba SummarizedExperiment]; };
1537  ibh = derive2 { name="ibh"; version="1.46.0"; sha256="0kxqpb9711yxg5xz2mhpwjw9nwixmfzzy6qql1sifi4mp6bh2fzf"; depends=[simpIntLists]; };
1538  icetea = derive2 { name="icetea"; version="1.16.0"; sha256="03v3ymmzj8dbpayjjpxm3cm8c2ysyd2p7yq0hp7lmv8pyq9x05xy"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; };
1539  ideal = derive2 { name="ideal"; version="1.22.0"; sha256="19byvmqv5bx2s4jsjr317xwpd96miz83gdamw9xx1byzka6wz29m"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; };
1540  idiogram = derive2 { name="idiogram"; version="1.74.0"; sha256="094n43lv6v1l1hcrfvgyx8a5dp7sk154f25dwrxb0b2k4g2kxdn0"; depends=[annotate Biobase plotrix]; };
1541  idpr = derive2 { name="idpr"; version="1.8.0"; sha256="06apnwy114hbjmfvyc47zajchhi9l7zmnxbdqx13d9gazj2sigbf"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; };
1542  idr2d = derive2 { name="idr2d"; version="1.12.0"; sha256="1qrrjb67wymak2nl8jisjv5xrp3sjmyx19rr7wrp7ffh84y8dm1b"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; };
1543  igvR = derive2 { name="igvR"; version="1.18.1"; sha256="0249lqj83qzxrpcbg8bgn0zijvx0dg0vdbli4f8h42mqx3jiihd4"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv httr RColorBrewer rtracklayer VariantAnnotation]; };
1544  illuminaio = derive2 { name="illuminaio"; version="0.40.0"; sha256="1cw526mbhh0czkwk99qnr6hfwi4k4xi2bm5p14kw9sr00if59x12"; depends=[base64]; };
1545  imageHTS = derive2 { name="imageHTS"; version="1.48.0"; sha256="124pksw08b88bj7l8pckzvgk6sf54d633cnbq2r5il7a09i4caim"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; };
1546  imcRtools = derive2 { name="imcRtools"; version="1.4.2"; sha256="0d3gcqq1jc7h9mvhvmyf5b524pyd9cqnwx2ci2y75l81jqyqb0hb"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table distances dplyr DT EBImage ggplot2 ggraph igraph magrittr MatrixGenerics pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph tidyselect viridis vroom]; };
1547  immunoClust = derive2 { name="immunoClust"; version="1.30.0"; sha256="0isqbgg5bmxlcw4nhhsz2dgpzhjkyz690kgj4qbrx00k0xq1wkn4"; depends=[flowCore lattice]; };
1548  immunotation = derive2 { name="immunotation"; version="1.5.0"; sha256="09fahcn8jcf7xdjhqjiaphnkn8v303ancb0ixc03frhqk1k8srqv"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; };
1549  impute = derive2 { name="impute"; version="1.72.3"; sha256="1qq80za9bkg0wqnlckvahnjz08xacwvpnflwnrmwr2xg0ifkis38"; depends=[]; };
1550  infercnv = derive2 { name="infercnv"; version="1.14.2"; sha256="04m51jdahhmj31cs2af9il5zijkpb255f9p06i8ga0v3g79gj1bp"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov igraph Matrix parallelDist phyclust RANN RColorBrewer reshape2 rjags Seurat SingleCellExperiment SummarizedExperiment tidyr]; };
1551  infinityFlow = derive2 { name="infinityFlow"; version="1.8.0"; sha256="03kmx5hsqzcjc1vw84ylnahq8ys42lanbir7a20lrhb3r7380swa"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; };
1552  intansv = derive2 { name="intansv"; version="1.38.0"; sha256="15nrx15jpm4dpv249vxvgkvz2hh8980hqlr3vv4m24a2gcrn6sn1"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; };
1553  interacCircos = derive2 { name="interacCircos"; version="1.8.0"; sha256="0yx7am1w9facdj7i1kcrhh65saq2bll7q6vh0i39dhw6fwciih17"; depends=[htmlwidgets plyr RColorBrewer]; };
1554  interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.36.0"; sha256="0zh6l2qdl4hvplc3d1p6y0fvr5wv7nijagj4laf2jb0y2jrs8c00"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; };
1555  interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.36.0"; sha256="1j2cz929q9hwkchnzcs3mnbmhg68mm06r9bgylnbll4j5ibqicrz"; depends=[BiocGenerics DT shiny]; };
1556  ipdDb = derive2 { name="ipdDb"; version="1.16.0"; sha256="0kza7156a4b79jswxwj7knc4sgknpv9sm4l41lgjrzzm0vipczn0"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; };
1557  isobar = derive2 { name="isobar"; version="1.44.0"; sha256="1p9kwkj0yr8in4hxhvy85wvgf5zc9m57b8skgwb2331fmbq8iipn"; depends=[Biobase biomaRt distr ggplot2 plyr]; };
1558  isomiRs = derive2 { name="isomiRs"; version="1.26.0"; sha256="0ybnr5y3ji3v7b7wn6762v92xvy6y6zl0vq4z8mz6mnqr3245zc6"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; };
1559  iterClust = derive2 { name="iterClust"; version="1.20.0"; sha256="1rdn88c65ybalr6sv7vlcmw3272l59gvnrv8xc81phlszzv1nqd5"; depends=[Biobase cluster]; };
1560  iterativeBMA = derive2 { name="iterativeBMA"; version="1.56.0"; sha256="0pplkj731v94aq9jkwcxcr5ddd88qssnvl8r03vwll3c003pp3yk"; depends=[Biobase BMA leaps]; };
1561  iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.56.0"; sha256="02zcwrb9kj9q444rg3qqsms80qapxfx9mpwam6gbbz6ziqp3pzcb"; depends=[BMA leaps survival]; };
1562  ivygapSE = derive2 { name="ivygapSE"; version="1.20.0"; sha256="0axxj9i83djpms8xhgw2ishac1p9866v4dbsy9fgs3plym7jzm8g"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; };
1563  karyoploteR = derive2 { name="karyoploteR"; version="1.24.0"; sha256="1dcxq3651903wwzr7bww8c4wd8h5h7rklnqfgklqpss0psx59d2w"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
1564  katdetectr = derive2 { name="katdetectr"; version="1.0.0"; sha256="15mbn0n2g58jfmvwaczd34fhhd1bj9sd7kd9bnvb0y89i8f7k1d7"; depends=[Biobase BiocParallel BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 changepoint changepoint_np checkmate dplyr GenomeInfoDb GenomicRanges ggplot2 ggtext IRanges maftools plyranges Rdpack rlang S4Vectors tibble tidyr VariantAnnotation]; };
1565  kebabs = derive2 { name="kebabs"; version="1.32.0"; sha256="0cry6mb4k128afl7r2jld1g7nl12qvihn59j7867v4k70ia33lxz"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; };
1566  keggorthology = derive2 { name="keggorthology"; version="2.50.0"; sha256="1znc7lw6dh5yb94fcx46l2lvbnxki0pilcamzmjc5x8r2bhvjrrr"; depends=[AnnotationDbi DBI graph hgu95av2_db]; };
1567  kissDE = derive2 { name="kissDE"; version="1.18.0"; sha256="0yrpz3sq6acx2200malb05b4wcw4p1vf8wlyc3dgswnqi61wgpnl"; depends=[ade4 aods3 Biobase DESeq2 doParallel DSS DT factoextra foreach ggplot2 gplots matrixStats shiny shinycssloaders]; };
1568  lapmix = derive2 { name="lapmix"; version="1.64.0"; sha256="0rhdzvbhsvnhlqd1bkbi9p8fqpc0lvm6jw4923dlmv68lxlfy9sb"; depends=[Biobase]; };
1569  ldblock = derive2 { name="ldblock"; version="1.28.0"; sha256="0i8v4wfp207f5dpf3y2n8fqn7mc4khj92gb209vzc3y3kbwp2c6n"; depends=[BiocGenerics httr Matrix rlang]; };
1570  lefser = derive2 { name="lefser"; version="1.8.0"; sha256="07bymf3gzb74d8m9ddsz1vjdg1f1a1j41nqpn6iz7mqkf83dh46c"; depends=[coin ggplot2 MASS SummarizedExperiment]; };
1571  les = derive2 { name="les"; version="1.48.0"; sha256="0rsg0q437sm33byg3ksvckmparym9k168vm9jicf0q92g4cq146m"; depends=[boot fdrtool gplots RColorBrewer]; };
1572  levi = derive2 { name="levi"; version="1.16.0"; sha256="13adc39arg071hjw84lawr8rabfz1v7c6cjcbidsw6mz470x0v8h"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; };
1573  lfa = derive2 { name="lfa"; version="1.28.2"; sha256="0z8aa2435f7v2l6zwv47v2a6p9hal156dsh8v1iri233d1qx7fax"; depends=[corpcor]; };
1574  limma = derive2 { name="limma"; version="3.54.2"; sha256="1qch34znld9i8sy1xwpy23z2zs07nj39wkfmgfi7qw141vn6gr8b"; depends=[]; };
1575  limmaGUI = derive2 { name="limmaGUI"; version="1.74.0"; sha256="0ff4k88szb4bfjgcflq9jls4wlchw0izr0ibjb8hrmz877w6370f"; depends=[limma R2HTML tkrplot xtable]; };
1576  lineagespot = derive2 { name="lineagespot"; version="1.2.0"; sha256="13h6xxdmsgb6gxqdwzr544758y8plsm934rk81p1fzw94xs4hk1d"; depends=[data_table httr MatrixGenerics stringr SummarizedExperiment VariantAnnotation]; };
1577  lionessR = derive2 { name="lionessR"; version="1.12.0"; sha256="1gih08dd35rmmynwwr86szfb5ygcsf1jh077nsf048x6xfaq4wp1"; depends=[S4Vectors SummarizedExperiment]; };
1578  lipidr = derive2 { name="lipidr"; version="2.12.0"; sha256="1kr7s5lq8l25c7c1qarpj879l2l93bc9677yjkb0xgwi8h8zkwnn"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; };
1579  lisaClust = derive2 { name="lisaClust"; version="1.6.3"; sha256="0g6j07wi952syzly21qaqk4xayw6lcp8bscnll15bcmkg42ixj9w"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 pheatmap purrr S4Vectors SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom spicyR SummarizedExperiment tidyr]; };
1580  lmdme = derive2 { name="lmdme"; version="1.40.0"; sha256="13nyndbmxmyyrs84fpgnak6zxikrhzbmkaykiffr7khpknszx388"; depends=[limma pls stemHypoxia]; };
1581  loci2path = derive2 { name="loci2path"; version="1.18.0"; sha256="1l9mv3cg08wqi81m4clz3y7yr4l38s44s384gl2hcw64xp55ar3g"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; };
1582  logicFS = derive2 { name="logicFS"; version="2.18.0"; sha256="17sy0bkcwxqlxrl44i5ncf203ds5a25d6p23vkkj64fiszkyq8p0"; depends=[LogicReg mcbiopi survival]; };
1583  logitT = derive2 { name="logitT"; version="1.56.0"; sha256="1mi2psbmz1cd5ms084wpljiv8kh1fdpwkaasj1j4axcw5wds7bqd"; depends=[affy]; };
1584  lpNet = derive2 { name="lpNet"; version="2.30.0"; sha256="148kvxav3mqxa7z6m8wp8qxlv1w7ladw7za1d7qaly7hbpll21yy"; depends=[lpSolve]; };
1585  lpsymphony = derive2 { name="lpsymphony"; version="1.26.3"; sha256="0iqc6km4pw50li2q35km8jpa0p3i6a6way910wcz56yd2jjbjyz5"; depends=[]; };
1586  lumi = derive2 { name="lumi"; version="2.50.0"; sha256="1091458is69dxnjrcd11czqy55c68sdnkrmpvlm6hw2cbghs2bjq"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; };
1587  m6Aboost = derive2 { name="m6Aboost"; version="1.4.0"; sha256="093fz8yh5hd478q4hvgmpi5kbjbh820mmjvx108n2lic6pp3j285"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; };
1588  mAPKL = derive2 { name="mAPKL"; version="1.28.0"; sha256="0nj2r54djps19lar2sp6bhdi5nkid195xyaqzzam2r7piwr8xv8s"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; };
1589  mBPCR = derive2 { name="mBPCR"; version="1.52.0"; sha256="18nzcglzh97g7hxbphn0gl1k8q1fp0055djrw10vq9rxc5sqx9s0"; depends=[Biobase GWASTools oligoClasses]; };
1590  mCSEA = derive2 { name="mCSEA"; version="1.18.0"; sha256="1j5kyjm2llwqvf63ah65hjci56xhjhsvjw77ra9k6fiyz7phfli2"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; };
1591  maCorrPlot = derive2 { name="maCorrPlot"; version="1.68.0"; sha256="07z6amr19dg2i5zvz86xs7f5nk82b5qj9slv69r9pbiifn6pci9d"; depends=[lattice]; };
1592  maPredictDSC = derive2 { name="maPredictDSC"; version="1.36.0"; sha256="0kbpckkm29x6n29a4jgb3l7bip5smrkl2jrqv5iix8d6lm21pq1s"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; };
1593  maSigPro = derive2 { name="maSigPro"; version="1.70.0"; sha256="048h2n50fjr1sxm6ls4d7g5jwhdlb65admnvwvdrzhs788vi0hx0"; depends=[Biobase MASS mclust venn]; };
1594  maanova = derive2 { name="maanova"; version="1.68.2"; sha256="1rcxvv0vcvksswjd3vry68nmvrbh05p5pica48bwcar93jh70bx9"; depends=[Biobase]; };
1595  macat = derive2 { name="macat"; version="1.72.0"; sha256="11sjkk5d0r9fhxjmv4m078dyy4zb7nn7zbasn7fa16g37xyhrbb6"; depends=[annotate Biobase]; };
1596  made4 = derive2 { name="made4"; version="1.72.0"; sha256="0ylcigzbahic99afqk1q29d4wczmsqmp2hasvihcykybb440a6f2"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; };
1597  maftools = derive2 { name="maftools"; version="2.14.0"; sha256="1f1r0frikaj6aw137dk523gagkxdygg7gzc3pd303ds5cqynwiqx"; depends=[data_table DNAcopy RColorBrewer Rhtslib survival zlibbioc]; };
1598  magrene = derive2 { name="magrene"; version="1.0.0"; sha256="1r7pri63lwr7hkqn2wkz782sgnx1v7z0fkd5x6yim141hm1y9xii"; depends=[BiocParallel]; };
1599  maigesPack = derive2 { name="maigesPack"; version="1.62.0"; sha256="0bl6g2aqyq1yh6v42y8jyqxz6lprkizaxm423ll5cmmw77lh82x0"; depends=[convert graph limma marray]; };
1600  makecdfenv = derive2 { name="makecdfenv"; version="1.74.0"; sha256="0bvj5dg6yfjnhga1z8788zmb98d8shyz8pzz0ggnml87c1p2gy25"; depends=[affy affyio Biobase zlibbioc]; };
1601  mapscape = derive2 { name="mapscape"; version="1.22.0"; sha256="0an5ylv1pjgqfaj8ic35l1f4bp12lbr1h7rx2n0qwgms2wkc80zg"; depends=[base64enc htmlwidgets jsonlite stringr]; };
1602  marr = derive2 { name="marr"; version="1.8.0"; sha256="1v1mpqvhivirsy1f6zhb0n69zjvad5saw892psh8v5n8nyywi0kr"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; };
1603  marray = derive2 { name="marray"; version="1.76.0"; sha256="1bad4cjxv22h6vxxn86mxp7xvxhhzj81pikxq3h3hc2a858qfkgs"; depends=[limma]; };
1604  martini = derive2 { name="martini"; version="1.18.1"; sha256="0bxwmkax4ji8c7janfdi9k5fzilmjjv1rp2chf0d157d0qmvh2pq"; depends=[igraph Matrix memoise Rcpp RcppEigen snpStats]; };
1605  maser = derive2 { name="maser"; version="1.16.0"; sha256="1zycx8s046g4d3w5qrn950bmi0nrnq1g7fvqji48mr6hmsyzplvv"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; };
1606  maskBAD = derive2 { name="maskBAD"; version="1.42.0"; sha256="0mp0wcpki7nh0i5vgzv9fvqmxwb2bn9rjszk4swg4zhgh37iids5"; depends=[affy gcrma]; };
1607  massiR = derive2 { name="massiR"; version="1.34.0"; sha256="1dxhp4pykq9ghqsnm1ylz3j3rvyglkjpbam9ngcsqa2jj0jh5cym"; depends=[Biobase cluster diptest gplots]; };
1608  matchBox = derive2 { name="matchBox"; version="1.40.0"; sha256="0s7pmrbbzy87xf2596m6ix14p02dfr8db0jgx5vzidfvplh7rwsx"; depends=[]; };
1609  matter = derive2 { name="matter"; version="2.0.1"; sha256="0vbc6fj3is3iv2w5fdd2vdw6lr6kz3fq5d4mpg3skfcnndnb7l2j"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; };
1610  mbOmic = derive2 { name="mbOmic"; version="1.2.0"; sha256="01zn60gqbzq3c4nzfdk2dhj515qlill9cs5n8lba9553j0sg739q"; depends=[cluster clusterSim data_table doParallel igraph psych visNetwork WGCNA]; };
1611  mbkmeans = derive2 { name="mbkmeans"; version="1.14.0"; sha256="1ghv2j88p3sppqph3wxpm8z84nw7bi4idkn11wf806d8h1krfjm7"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; };
1612  mdp = derive2 { name="mdp"; version="1.18.0"; sha256="0z7d08kzqxabmd1anqa8k5rljz0mhwy1wzk5cghr770492ax9yap"; depends=[ggplot2 gridExtra]; };
1613  mdqc = derive2 { name="mdqc"; version="1.60.0"; sha256="1hn6m0z8q3jnzb0h8m29khgm0cx81cfs3s1j6hlg4wsrwkha1i3w"; depends=[cluster MASS]; };
1614  megadepth = derive2 { name="megadepth"; version="1.8.0"; sha256="1krk5iqqzkkkxfgsvi9j6mj14i2rzisrrq0xmxjsrkgfh19awhr8"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; };
1615  memes = derive2 { name="memes"; version="1.6.0"; sha256="0480pq3n99r6h7gvhw30j4ql259q8jq88lzjb6ik69g5xlgdrg68"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; };
1616  meshes = derive2 { name="meshes"; version="1.24.0"; sha256="1qdzjyh6jj8jr74xjpqdfyak0alx6n7bi3zp0sjblmlzd5mydk53"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; };
1617  meshr = derive2 { name="meshr"; version="2.4.0"; sha256="14kdb9wa99pb9jbsnhz86a5ajp6vwaqkkkj3x63ng0wl4pyh90lx"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; };
1618  messina = derive2 { name="messina"; version="1.34.0"; sha256="1pa8xl98xzadzh2q8y4j446947lapxyz2aijx8xp3dv62i5cbv0p"; depends=[foreach ggplot2 plyr Rcpp survival]; };
1619  metaCCA = derive2 { name="metaCCA"; version="1.26.0"; sha256="1jvzp9fzggvavg4jbmmyb6cibgll0yglmc3nsfgygsh7z20yss36"; depends=[]; };
1620  metaMS = derive2 { name="metaMS"; version="1.34.0"; sha256="113w3zk32xg0f8ik09w8wl5zr02wmfkp05nqgp8615j7kqrnr91d"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; };
1621  metaSeq = derive2 { name="metaSeq"; version="1.38.0"; sha256="0bfsmsy1zpzrmah6y52yb3g2qy8c30s74l9w98rrisq0jfhldvdp"; depends=[NOISeq Rcpp snow]; };
1622  metabCombiner = derive2 { name="metabCombiner"; version="1.8.0"; sha256="1s9vccbd2abaz2dsg7gm0amdvwb5iildz0pavfhhssl0np07h9rf"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; };
1623  metabinR = derive2 { name="metabinR"; version="1.0.0"; sha256="1qyy2l5y18v1jg54lk7sv9f1wcmrzbff4yk921m9gn4jcxdn59l9"; depends=[rJava]; };
1624  metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.8.0"; sha256="02azijq6hq4141zh8nls1xg5h1hlgyb130b6l47966pn1drm5q9l"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; };
1625  metabomxtr = derive2 { name="metabomxtr"; version="1.32.0"; sha256="0b01h0dd1hnlnx89i347rca032lk48d49xfb03r15di1gcwwrw5q"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; };
1626  metagene = derive2 { name="metagene"; version="2.30.0"; sha256="09z4hgcp7lnybv4hq2dybc8zq6mwndls7p8y30lzb6rw2fryhkhq"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats purrr R6 Rsamtools rtracklayer stringr]; };
1627  metagene2 = derive2 { name="metagene2"; version="1.14.0"; sha256="12knh4bri4j5sf12wf129kg484xbc37hkfkyw39rkz2arx465giw"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; };
1628  metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.40.0"; sha256="01wjw4kcm8ysa5sn3cqg4a9i5pyksnwmbdqp5fr6n2l9hllkc9jy"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; };
1629  metahdep = derive2 { name="metahdep"; version="1.56.0"; sha256="1fyphlk6v5va7yr7ihb4yman0sd3jywscqx6an6zv1jkwvp9hpd1"; depends=[]; };
1630  metapod = derive2 { name="metapod"; version="1.6.0"; sha256="06ala1qz9bfq7nnj92m0c5r85kk7h4zrljjh0hgrap5sjlsm09bb"; depends=[Rcpp]; };
1631  metapone = derive2 { name="metapone"; version="1.4.0"; sha256="13fnh1n2ydykkvpj9s9xvikfgahsi827rmwzb4zyk9h2g4dx5jk2"; depends=[BiocParallel fdrtool fgsea fields ggplot2 ggrepel markdown]; };
1632  metaseqR2 = derive2 { name="metaseqR2"; version="1.10.0"; sha256="0m5dyg0gsvif02mgz0mcdk8annmqy4a6s5ldk3d9hjjzcgchpkpv"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; };
1633  metavizr = derive2 { name="metavizr"; version="1.21.0"; sha256="1d88f854sn5m2pklsyvkmq05yzjanxlnkz5gpzban62qq1mpvims"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; };
1634  methInheritSim = derive2 { name="methInheritSim"; version="1.20.0"; sha256="1mkh8j1kccc95r1xj77hkpal0zdj0g923p8xr7vm1rxz98fpw30n"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; };
1635  methimpute = derive2 { name="methimpute"; version="1.20.0"; sha256="0pksjz8i42wvg830rlwyfk5wv0mymnxpv65swjgbkxhd1hx0s1nf"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; };
1636  methrix = derive2 { name="methrix"; version="1.12.0"; sha256="08p6zq9pbqa21awgm7qfxwb81600i9c1af536zwp4a8fqn7vphhs"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; };
1637  methylCC = derive2 { name="methylCC"; version="1.12.0"; sha256="0m0zs1nj2xmslfj35khmyy5nzrq49q5mpyv9ymq07wja54qpxx5l"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; };
1638  methylGSA = derive2 { name="methylGSA"; version="1.16.0"; sha256="1xzgv5r62pbn9y7bc2rih5073n4qzx9fhkvja2pr0irlx2jr4arm"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; };
1639  methylInheritance = derive2 { name="methylInheritance"; version="1.22.0"; sha256="0rf6gw8b4v20q9lhzgxskyxga9iszfgdvgdhs53x0xkfa2sagddr"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; };
1640  methylKit = derive2 { name="methylKit"; version="1.24.0"; sha256="0w6wv8x1jggbvymb07b2z47myf239mwpwbgz5p5yi60qb0k7p2q9"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; };
1641  methylMnM = derive2 { name="methylMnM"; version="1.36.0"; sha256="0mj34ch1k216k42qj9wyf5yshl1qjb6hvpxs5y2rk21w6dwziklk"; depends=[edgeR statmod]; };
1642  methylPipe = derive2 { name="methylPipe"; version="1.32.0"; sha256="1za6f3y5mfgk8pfsv487q1xbigrv85vs0q1j71zcbc3lminsfzyp"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; };
1643  methylSig = derive2 { name="methylSig"; version="1.10.0"; sha256="1yg9lkgqgdlb5d8wiprnilw4nmwgq1nsz2p8v5zm09sfyvkl05gx"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
1644  methylclock = derive2 { name="methylclock"; version="1.4.0"; sha256="0pzpxdm3z6payp5mh45a939zk4kqg08rkm4c96ryd2j7a4yvk55q"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr gridExtra impute methylclockData minfi PerformanceAnalytics planet preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; };
1645  methylscaper = derive2 { name="methylscaper"; version="1.6.0"; sha256="08lrc54safmb9ygg4vpqjfn5ycps19j7gbgi3rjcjzc7qv6zgjwp"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; };
1646  methylumi = derive2 { name="methylumi"; version="2.44.0"; sha256="07kfyv3kkayzh0akxfl3p9gckw8qiplkxbyxw8npc7cb03ihgmc4"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; };
1647  mfa = derive2 { name="mfa"; version="1.20.0"; sha256="0xrgl1nzyvwm34249ijw0ld4dkz0001ck8cv780yx2dk92lp9ky2"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; };
1648  mgsa = derive2 { name="mgsa"; version="1.46.0"; sha256="1h559i80hd8ajvimj3qs9c2yayl4cz8kr7irn4184wcql61dq5md"; depends=[gplots]; };
1649  miQC = derive2 { name="miQC"; version="1.6.0"; sha256="1fy4iqm5frmnrlmcpikhrvr59hv2cbsrgrn6xkcq9jxcwnm7zxnz"; depends=[flexmix ggplot2 SingleCellExperiment]; };
1650  miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.22.0"; sha256="1srx066gsqcngngjpac29wnqf4n5r297h5wbbgjdvkkvyc7fhvwy"; depends=[]; };
1651  miRLAB = derive2 { name="miRLAB"; version="1.28.0"; sha256="1fj8vgwym7w65z84w043v75j0cn6nb882sk91mdmp1q0xwmn4jq0"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; };
1652  miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.26.0"; sha256="0wvz9gz7zh5qzf146hz788rc289mb22bi78ffjh8xmyfhc3jxmpj"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; };
1653  miRNApath = derive2 { name="miRNApath"; version="1.58.0"; sha256="0h6q3p29pvzfk8ggb97akbh0lmawypwp9rs4bmnj52599ws4x3n1"; depends=[]; };
1654  miRNAtap = derive2 { name="miRNAtap"; version="1.32.0"; sha256="05pxcqaw7hkfchmy8m6ywrblh3kj2zwargrw1v969af24lgaa3fa"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; };
1655  miRSM = derive2 { name="miRSM"; version="1.16.0"; sha256="153bdgwkqkcidvracjwxa249j6nl2fbsdg9wabnjd67qph8sa8rn"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; };
1656  miRcomp = derive2 { name="miRcomp"; version="1.28.0"; sha256="1xnw6gv6h0b7fzmcirwdkp6hn33wc8k1dify5xy6r17sgfy51xm9"; depends=[Biobase KernSmooth miRcompData]; };
1657  miRmine = derive2 { name="miRmine"; version="1.20.0"; sha256="1mn9cjx6hqgqsmjg3rjkdyfs0d4ji12k5s2mw2rc87bwcl3d0rai"; depends=[SummarizedExperiment]; };
1658  miRspongeR = derive2 { name="miRspongeR"; version="2.2.0"; sha256="0nm4zzwpl4xzrc2v3br7963w2mfmlsg32pr4j4qqf090gjqj2k3k"; depends=[clusterProfiler corpcor doParallel DOSE foreach igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA SPONGE survival]; };
1659  mia = derive2 { name="mia"; version="1.6.0"; sha256="0yz88ggv6d5rccdwzixwg9y1bc4xysazlmv1ph88wxs8r6fcmync"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; };
1660  miaSim = derive2 { name="miaSim"; version="1.4.0"; sha256="01rvvjm6q1b7pdi89jvlhiqv70rms128f08frhvfxj6m4wr432hj"; depends=[deSolve gtools MatrixGenerics poweRlaw S4Vectors SummarizedExperiment TreeSummarizedExperiment]; };
1661  miaViz = derive2 { name="miaViz"; version="1.6.0"; sha256="18gp77islzfy1ll7yxk3l8l1q8kj4hxj0qns6mk9i0pb1vqs1lk7"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; };
1662  microRNA = derive2 { name="microRNA"; version="1.56.0"; sha256="002wagng2zqa2cl8140im2fzbic6mqr2mp6qbaqk5ary5m8c0bkq"; depends=[Biostrings]; };
1663  microbiome = derive2 { name="microbiome"; version="1.20.0"; sha256="1j3lrrz6yxfzsr037c0bbdhrs0ll7jg0mpcvk3iqdryi5rysnx0x"; depends=[Biostrings compositions dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; };
1664  microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.12.0"; sha256="0gfldxhrz70drr9g4g1bpk0ncazldyc32z9by0ri881hyqah3d9x"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; };
1665  microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.8.0"; sha256="1y9n12vmqr1l7c33smfl0wm33nzww84593y6azbhyj0sl50gk4a2"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; };
1666  microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.4.0"; sha256="022hzblxs2b3vlj3d9xicqyap8gr5r0dk29wz2n09d759aawc0nr"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics BiocParallel biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC pROC purrr rlang S4Vectors tibble tidyr tidytree vegan yaml]; };
1667  midasHLA = derive2 { name="midasHLA"; version="1.6.0"; sha256="0j4sw8vbkksgm4g2wlzyanvmin7izv7209kqk3nnyx1g2crgh5ki"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; };
1668  miloR = derive2 { name="miloR"; version="1.6.0"; sha256="07p9rs1jmgxqaahjbrnvvs94c142n2qfw8ip3qqkr6mhzwr19ly3"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; };
1669  mimager = derive2 { name="mimager"; version="1.22.0"; sha256="1q11i2k78nk8nga0sy4zps86i5n650km8v9h4yz12k12akwwp156"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; };
1670  mina = derive2 { name="mina"; version="1.6.0"; sha256="0w2m191lxy34c22qbds00g4advczzic4rvq6g78lmbpmf8xzj5sx"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; };
1671  minet = derive2 { name="minet"; version="3.56.0"; sha256="1xknyc2m03dyqrnx6np2y2lr41w06arl114f6cncl6wsnanqxzrz"; depends=[infotheo]; };
1672  minfi = derive2 { name="minfi"; version="1.44.0"; sha256="15989zilgy2j4k4nw046qg8wli7ynjh2b1yzfv7cwgn87mp618lc"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; };
1673  mirIntegrator = derive2 { name="mirIntegrator"; version="1.28.0"; sha256="0662jsrw745973kf3f95l3n6i5s9h2nk2ap6alv8sb5rkykva2in"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; };
1674  mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.6.0"; sha256="07lfh8c7ks9lbnskvqjhjrssp0wk1kpp7mbh7c7cg6q1kxcxpqyx"; depends=[assertthat caTools corrplot data_table dplyr ggplot2 MASS pheatmap pscl purrr R_utils reshape2]; };
1675  missMethyl = derive2 { name="missMethyl"; version="1.32.1"; sha256="1rrm8m68kgjkrw1wdli5lrwqlavhbm490zgnj5vafzpvx7xajfma"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; };
1676  missRows = derive2 { name="missRows"; version="1.18.0"; sha256="0kwbmhz80an07fcp6skv4bik0ncszxcllfi7jv9h0k814qciij0y"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; };
1677  mistyR = derive2 { name="mistyR"; version="1.6.1"; sha256="0kcqcr1bmmhxngmygr64ca5kl8gsc7z9qwq2ivcc97f78xs3p6p8"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 purrr R_utils ranger readr ridge rlang rlist stringr tibble tidyr tidyselect withr]; };
1678  mitch = derive2 { name="mitch"; version="1.10.0"; sha256="174hiq8xzbvdkfxdgm742sjs7qcmnkb9shcid1p8x8ci6fk9vs61"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; };
1679  mitoClone2 = derive2 { name="mitoClone2"; version="1.4.0"; sha256="07yi1pz05na7w4ppp0kcrylny4p1ca9w1rxwmph70i81paf5kpfn"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; };
1680  mixOmics = derive2 { name="mixOmics"; version="6.22.0"; sha256="0w6shihvnvkjycba1hy8drd8wcxxcl2rimkrb4vdl8aygdifrarx"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; };
1681  mnem = derive2 { name="mnem"; version="1.14.0"; sha256="1midn7hqi037fwk3pxrzlc0a7fgs0ylxpd312ghjb45g1anxdc0s"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; };
1682  moanin = derive2 { name="moanin"; version="1.6.0"; sha256="0cj9ym1iw4xpc9nmswhv9pnd2yr5mqmjzs43y7dd0c6x5nq90l13"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; };
1683  mogsa = derive2 { name="mogsa"; version="1.32.0"; sha256="1qr8ncs2993pz80idbz2paappn0pw0akjv25zkqc084bm74q0qb9"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; };
1684  monaLisa = derive2 { name="monaLisa"; version="1.4.0"; sha256="1hljdgb7cjhcjvjl4ffwjsn0har7p7rhg07320575s738pzm3wj3"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; };
1685  monocle = derive2 { name="monocle"; version="2.26.0"; sha256="1d3xgh9xgqa28bgyd06zkjmg75lq7hdah3d140l1bqq2ii1bv62g"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba leidenbase limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; };
1686  mosaics = derive2 { name="mosaics"; version="2.36.0"; sha256="146fwpzmri7rlz1rq92xh70wrvmbfa5ysa6gv1akajbchgnrmikq"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; };
1687  mosbi = derive2 { name="mosbi"; version="1.4.0"; sha256="04fdphz8jcmpxql9v496r7xikqhcbm1kn8a9j6hav9z4w8slg31l"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; };
1688  motifStack = derive2 { name="motifStack"; version="1.42.0"; sha256="18gfx5dq83s2ny39a7cgg4r3b05gg9l0kfg83brwrm1cby08jdhm"; depends=[ade4 Biostrings ggplot2 htmlwidgets TFBSTools XML]; };
1689  motifbreakR = derive2 { name="motifbreakR"; version="2.12.3"; sha256="073xv26yaksqa0j2vyqf8ak5yqsxg5s86izdlmlwdidnxdnd16si"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; };
1690  motifcounter = derive2 { name="motifcounter"; version="1.22.0"; sha256="0vsjnp19c8wscb3n2wkqvmssx052fr8wcfb6y67393mq1pqa719m"; depends=[Biostrings]; };
1691  motifmatchr = derive2 { name="motifmatchr"; version="1.20.0"; sha256="01k2ngf4nj2cazb3a2c96by86xwdkdngzwhb73n2wadibamnqnfv"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; };
1692  mpra = derive2 { name="mpra"; version="1.20.0"; sha256="04pqnpsdak6yqmd99bfkild15s6szlwy86dxlnbd1fxvpyarfnf9"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; };
1693  msImpute = derive2 { name="msImpute"; version="1.8.0"; sha256="0mlybbrs6k5z41lhd3pvmvakqd1d1pkrvf0jkrbdwzs9grb5d4nn"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; };
1694  msPurity = derive2 { name="msPurity"; version="1.24.0"; sha256="1w998i5lv1c2485cmdzk31inykhl64s7njaj725cs1r3gzi4l7h4"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 magrittr mzR plyr Rcpp reshape2 RSQLite stringr]; };
1695  msa = derive2 { name="msa"; version="1.30.1"; sha256="064hmry0zhmpchxgjsw0krsybr9v9gbsz26zmj2a39pg1nggwbq4"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; };
1696  msgbsR = derive2 { name="msgbsR"; version="1.22.0"; sha256="0g6d0gx5af61svxjdzx438vz24sd81qml7f755kq8nrr89pacvh0"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; };
1697  mslp = derive2 { name="mslp"; version="1.0.2"; sha256="0sv6a9vjrgi4cd2mvb88jvr8wdwf6hr3570zpq3w3072m8m8gj4v"; depends=[data_table doRNG fmsb foreach magrittr org_Hs_eg_db pROC randomForest RankProd]; };
1698  msmsEDA = derive2 { name="msmsEDA"; version="1.36.0"; sha256="17xklsg483zd205q5hyxy6b3cgrb53pplb1wc7pmv5638y7nsq2v"; depends=[gplots MASS MSnbase RColorBrewer]; };
1699  msmsTests = derive2 { name="msmsTests"; version="1.36.0"; sha256="10frsvqhi3i0v2w4q4q9xz1ykyf6s3nrjlmn94x3kd06p3s839k3"; depends=[edgeR msmsEDA MSnbase qvalue]; };
1700  msqrob2 = derive2 { name="msqrob2"; version="1.6.1"; sha256="1cv7i2n8a470jzpldlwyrx12d8my2al2522vilyyfr9j74xgi0ln"; depends=[BiocParallel codetools limma lme4 MASS Matrix MultiAssayExperiment purrr QFeatures SummarizedExperiment]; };
1701  multiClust = derive2 { name="multiClust"; version="1.28.0"; sha256="0mw48jm154c0k9nhal56xc4jv0n3ms0s1770g2i2lxkr37905swq"; depends=[amap cluster ctc dendextend mclust survival]; };
1702  multiGSEA = derive2 { name="multiGSEA"; version="1.8.2"; sha256="1s8rdrzpvnscdisv1ld31aiv5vbddvr7f523sc9ngv2nsmisxdq8"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metap rappdirs rlang]; };
1703  multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.16.0"; sha256="0mwb61c6yqq1frnsgp3nafmlrl1zi8sxckp5yw7z083805y3fbyr"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; };
1704  multiMiR = derive2 { name="multiMiR"; version="1.20.0"; sha256="1zfjr1cw1qpi70wxrkw32y3dmwhbsdzd2522cgkj4x97g4d5cn99"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; };
1705  multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.22.0"; sha256="0g28ksb9vf2lpv15s9s64nnz6smhxrf9cbsw4kba0dlyrrzzha4a"; depends=[doParallel foreach SummarizedExperiment]; };
1706  multiSight = derive2 { name="multiSight"; version="1.6.0"; sha256="1rpikqpg6y2dzgfb3wz92cf45kbvcd4izybkil54gls7wvq0a79i"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot ggnewscale golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; };
1707  multicrispr = derive2 { name="multicrispr"; version="1.8.0"; sha256="17b2c387f7xb8gcsbxqks9j7jr2yi1hysrjdl1vqxzwlzzz7v4az"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; };
1708  multiscan = derive2 { name="multiscan"; version="1.58.0"; sha256="1fj9fap9nz3cr9hvdhjnw4qbv684vsqjaf29sjcjvsay5f919gfy"; depends=[Biobase]; };
1709  multtest = derive2 { name="multtest"; version="2.54.0"; sha256="0ciz0fl0pzm4hjqw8af32s540lwjbkwvwnzgbfwadax40hgjs0g7"; depends=[Biobase BiocGenerics MASS survival]; };
1710  mumosa = derive2 { name="mumosa"; version="1.6.0"; sha256="0g0597dlzc1z4giq3qn9cy9hm1fywf5qv33lnac4zwb2hvg4qc42"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; };
1711  muscat = derive2 { name="muscat"; version="1.12.1"; sha256="061dgs3ygvr4vrc6mrmikqn4a7a5qajn7k8crbskdkg4svg8qv1a"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; };
1712  muscle = derive2 { name="muscle"; version="3.40.0"; sha256="14dqhmvfdcm8fn27ih5q654rla4qgikj4761lhhnhzyvhqvnmglk"; depends=[Biostrings]; };
1713  musicatk = derive2 { name="musicatk"; version="1.8.0"; sha256="1l45jkhjciwvpy86c5ql3j6s8cm4d8crwdp45gj01xl23x1gkdgf"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap cowplot data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny shinyalert shinyBS shinybusy shinydashboard shinyjqui shinyjs sortable stringi stringr SummarizedExperiment TCGAbiolinks tibble tidyr topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation withr]; };
1714  mygene = derive2 { name="mygene"; version="1.34.0"; sha256="1aldf0x5vivjbhp169chg5k3fq5r41fiykxii8f7z580h3spmapm"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; };
1715  myvariant = derive2 { name="myvariant"; version="1.28.0"; sha256="14p8x89ff9j4qzq4mghnxiwk6hac22hrq0zsvj2918srmwx18cjr"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; };
1716  mzID = derive2 { name="mzID"; version="1.36.0"; sha256="0h5w5ykbziaif6m61pa5x92f2rblfgldvj9vajfhkmxj1b2ks9za"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; };
1717  mzR = derive2 { name="mzR"; version="2.32.0"; sha256="0p7mkvvaf25si95lpwpr65jm3dzxmgs9i0wilyb2mbxkdcz9vm71"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib]; };
1718  nanotatoR = derive2 { name="nanotatoR"; version="1.14.0"; sha256="1lb9jn0wi1rn3dcgc5b5fg3xvpm8dcws3ryxb29nvxjhiy7ry90z"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse VarfromPDB XML XML2R]; };
1719  ncGTW = derive2 { name="ncGTW"; version="1.12.0"; sha256="0jxchaq442kmprz65pv43xjj4cwv29aq28jz8l3ih70k873g8ap9"; depends=[BiocParallel Rcpp xcms]; };
1720  ncRNAtools = derive2 { name="ncRNAtools"; version="1.8.0"; sha256="0mbf3x2bf1qk2y7a0xjyvlj591b5dcl51f21vvkb0ikdm3bjiqz5"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; };
1721  ncdfFlow = derive2 { name="ncdfFlow"; version="2.44.0"; sha256="0ak1rrd0r899nz4zdg9v3pkvlp94sbcc3q6xl249krgbx0a3sizm"; depends=[BH Biobase BiocGenerics cpp11 flowCore Rhdf5lib zlibbioc]; };
1722  ndexr = derive2 { name="ndexr"; version="1.20.1"; sha256="0m6p9h431xdb0r6q1xsqkdmm7cwrpdizlcisz30dl6f7nlm5pjyv"; depends=[httr jsonlite plyr RCX tidyr]; };
1723  nearBynding = derive2 { name="nearBynding"; version="1.8.0"; sha256="17fwk2863jb0y980y7f1in04x8529is6bvr2bymnsg7kkk1spvv6"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; };
1724  nempi = derive2 { name="nempi"; version="1.6.0"; sha256="0x15n5k9jbimg6rljj028dnmnymj9g8ylrds58sa7yxpp0aa9gyl"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; };
1725  netDx = derive2 { name="netDx"; version="1.9.0"; sha256="1k6grq4gxr507m43x1srszbic4chvj9qba52h6gdgmpmimfyg5bm"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; };
1726  netOmics = derive2 { name="netOmics"; version="1.4.0"; sha256="0fpnydck4vqly14y718bm823b5lxn71k1df60vjfcg9ymxk8qz5z"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; };
1727  netSmooth = derive2 { name="netSmooth"; version="1.18.0"; sha256="1vivvzv4bl0i5y7mg1dm1rp87vch3k6byrapif3nwzj02f2fwriq"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; };
1728  netZooR = derive2 { name="netZooR"; version="1.2.0"; sha256="00drgnk8fvjfsbmlj8nh20yvly4z0a0xfsxxcany2kygi8r1yq7h"; depends=[AnnotationDbi assertthat Biobase data_table doParallel dplyr foreach ggdendro ggplot2 GO_db GOstats gplots igraph MASS Matrix matrixStats nnet org_Hs_eg_db pandaR penalized RCy3 reshape reshape2 reticulate STRINGdb tidyr vegan viridisLite yarn]; };
1729  netbiov = derive2 { name="netbiov"; version="1.31.0"; sha256="0ldpbq8d7hq6sa5qcc5qh23plczg35170v3fifyz6a47vghr5ff9"; depends=[igraph]; };
1730  netboost = derive2 { name="netboost"; version="2.6.1"; sha256="0w5gbvzmzm2pg045vrddpzqjb1i191cy0mga7k8iyg3vfq7nvb81"; depends=[colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; };
1731  netboxr = derive2 { name="netboxr"; version="1.9.0"; sha256="1brnm60745s2axls4p6qcxipjjr3ph9ijg1q604fgm42rf6i7qzm"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; };
1732  nethet = derive2 { name="nethet"; version="1.30.0"; sha256="0dhyjphj0134kx91ny94g0yd6kbjxb5qlbrds2z31bgxcxpms9gb"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; };
1733  netprioR = derive2 { name="netprioR"; version="1.24.0"; sha256="18cmg460hqygxxdsq3d4ns9aqbvj5knh9lv1d45fd3k1k9fhvsql"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; };
1734  netresponse = derive2 { name="netresponse"; version="1.58.0"; sha256="1d1285sgk86yi4sc93dhyizzs1a6333z6kcmpk3a7ki6z27a3jjk"; depends=[BiocStyle ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; };
1735  ngsReports = derive2 { name="ngsReports"; version="2.0.3"; sha256="0kngch6vkhd9gr5a6f0d9r8rkphlp7s7a8m6ssd55qnmr4xcvw2a"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 lifecycle lubridate pander patchwork plotly readr reshape2 rlang rmarkdown scales stringr tibble tidyr tidyselect zoo]; };
1736  nnNorm = derive2 { name="nnNorm"; version="2.62.0"; sha256="0n01vsqhr9pgsyijvlp9k89l7yzs99f4xi1p7i5zmiffd39p013d"; depends=[marray nnet]; };
1737  nnSVG = derive2 { name="nnSVG"; version="1.2.0"; sha256="1mxsii17msqww37q5zgfmdyd6sv00mn1yz44lqkaa7pbldyhhixk"; depends=[BiocParallel BRISC Matrix matrixStats SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
1738  nondetects = derive2 { name="nondetects"; version="2.28.0"; sha256="0n1ikrxz6gr27i86vv0j7x8m63rwl07wn72jzn4p4h1j46fzqdvp"; depends=[arm Biobase HTqPCR limma mvtnorm]; };
1739  normalize450K = derive2 { name="normalize450K"; version="1.26.0"; sha256="1a9q6dwkqg2s5q29rpx9lvhws8hnzdjc8dk6c56mh1q02gpxz8v3"; depends=[Biobase illuminaio quadprog]; };
1740  normr = derive2 { name="normr"; version="1.24.0"; sha256="1vx9v22am8vc5r9fml1nblm2x64zrifsqxlav9y0af4mbpd76d34"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; };
1741  npGSEA = derive2 { name="npGSEA"; version="1.34.0"; sha256="014w7f95h44da6c7kwsddzp3wjbfyy3f697wykgz659hv86zdx0h"; depends=[Biobase BiocGenerics GSEABase]; };
1742  nuCpos = derive2 { name="nuCpos"; version="1.16.3"; sha256="14anlg6a7b3qw2k39q273p5396v3nqlask0gz92h170z24gjyc1s"; depends=[]; };
1743  nucleR = derive2 { name="nucleR"; version="2.30.0"; sha256="0j8g0lf6pzqzak259fp6xckgcjrabqgd28bwy9fbx3pd1qj5yrh0"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; };
1744  nucleoSim = derive2 { name="nucleoSim"; version="1.26.0"; sha256="0cgljwk9car3s5ncslx0j0bya6hchfv1zk09q8r0y6258mim4qy6"; depends=[IRanges S4Vectors]; };
1745  nullranges = derive2 { name="nullranges"; version="1.4.0"; sha256="01f7x99nzgi0si02p5bsjvf0mybl52kxnkm2j1f1s2rai5srkca4"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales]; };
1746  occugene = derive2 { name="occugene"; version="1.58.0"; sha256="13hv71w25jzlf0fs5wx400m1zh4l4vxlvv42vidiyggj894ky5a3"; depends=[]; };
1747  octad = derive2 { name="octad"; version="1.0.0"; sha256="0qa407rhi9z1n2hif40j27vbfsy222wi2hh26qn4s0s7f2fnfyfl"; depends=[AnnotationHub Biobase data_table DESeq2 dplyr EDASeq edgeR ExperimentHub foreach ggplot2 GSVA htmlwidgets httr limma magrittr octad_db plotly reshape2 Rfast rhdf5 RUVSeq S4Vectors]; };
1748  odseq = derive2 { name="odseq"; version="1.26.0"; sha256="0p51lay3xasqg55j99gdx1gpk93p4m2czvbw912h559v2s4hnzqq"; depends=[kebabs mclust msa]; };
1749  oligo = derive2 { name="oligo"; version="1.62.2"; sha256="19n0nvgyv2hzzcla93w2bzxvfdqg6walh0s1yykwl5b7ni4cazg9"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; };
1750  oligoClasses = derive2 { name="oligoClasses"; version="1.60.0"; sha256="1ik9xfx6g4gf54hm5f5prip1iz6694czpbhlgwd3p9qh8ddndgp8"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; };
1751  omada = derive2 { name="omada"; version="1.0.0"; sha256="1p9nywbh81d91cah8in5aa4say3zd9159f266k8qbk1psy93zz07"; depends=[clValid diceR dplyr fpc ggplot2 glmnet kernlab pdfCluster Rcpp reshape]; };
1752  omicRexposome = derive2 { name="omicRexposome"; version="1.20.0"; sha256="13xgp6hnn9py8400k1411fyzlxskdlams2x0p7skn44219iqpqwj"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; };
1753  omicade4 = derive2 { name="omicade4"; version="1.38.0"; sha256="1w9fsg0r6ir9nmmpf08b1mh8mnrzxk3f398y1w5dg34fdz4phgpg"; depends=[ade4 Biobase made4]; };
1754  omicplotR = derive2 { name="omicplotR"; version="1.18.0"; sha256="1h3r0lhkaqhl6cc05m4qjwl3hyz8ayig6xmj1jqi1kcm291js54c"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; };
1755  omicsPrint = derive2 { name="omicsPrint"; version="1.18.0"; sha256="0zjidzy0nd9pb8f704xasm2nindaz953pmmv86c9fq0dmcv63wz4"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; };
1756  omicsViewer = derive2 { name="omicsViewer"; version="1.2.0"; sha256="1di3wyf6nzl39shbqmcxjr2kxmn7gghh0z977ax6lfzzwmqvqgzr"; depends=[beeswarm Biobase curl DT fastmatch fgsea flatxml ggplot2 ggseqlogo htmlwidgets httr Matrix matrixStats networkD3 openxlsx plotly psych RColorBrewer reshape2 RSQLite S4Vectors shiny shinybusy shinycssloaders shinyjs shinythemes shinyWidgets stringr SummarizedExperiment survival survminer]; };
1757  ompBAM = derive2 { name="ompBAM"; version="1.2.0"; sha256="0kfym9xlhjqrlcdzpvl0533f7pgyffgb4adwda6wiyq3mbyag5l6"; depends=[Rcpp zlibbioc]; };
1758  oncomix = derive2 { name="oncomix"; version="1.20.0"; sha256="0mdjyq2awrvh0r5sivb5zk0zg13100am8dd6r2bvw8nhn1ns5xby"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; };
1759  oncoscanR = derive2 { name="oncoscanR"; version="1.0.0"; sha256="05rnw08rc9x65rgkw553szjjwqx0b9i6brg7hc0x8r180il22z9k"; depends=[GenomicRanges IRanges magrittr readr S4Vectors]; };
1760  oneSENSE = derive2 { name="oneSENSE"; version="1.20.0"; sha256="1lzb8i3frv3va2q28glwnjwszrynhky5y8fx10q4h52p2wqgc4v3"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; };
1761  onlineFDR = derive2 { name="onlineFDR"; version="2.6.0"; sha256="0a66qyhd22vkn58m844fm8y22pv5s52r2hivvq0d9sqns7f8q286"; depends=[progress Rcpp RcppProgress]; };
1762  ontoProc = derive2 { name="ontoProc"; version="1.20.0"; sha256="1p7849msd9181f3y20n67rac5dbbq5a7z9cggw8y4yh4a9zjz4r0"; depends=[AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny SummarizedExperiment]; };
1763  openCyto = derive2 { name="openCyto"; version="2.10.1"; sha256="16wsa9dhnz8gz1siyhfxvnbfg142g7fmhxiqxr7n69qpq9w8yhr0"; depends=[BH Biobase BiocGenerics cpp11 data_table flowClust flowCore flowViz flowWorkspace graph ncdfFlow RBGL RColorBrewer]; };
1764  openPrimeR = derive2 { name="openPrimeR"; version="1.20.0"; sha256="0vc9fj4qz741px820m4yzl0nmfszb9pp8jz0mgm0bn8rypibhs1c"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; };
1765  openPrimeRui = derive2 { name="openPrimeRui"; version="1.20.0"; sha256="0m98qwpb84bs0qfk17ibbxkjnknnqlkb21hmhqkjnd3hxrk615zc"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; };
1766  oposSOM = derive2 { name="oposSOM"; version="2.16.0"; sha256="0czk9bgi381vxa4n8hqamsq7aih26xi8wg3j8c1f2wlxhg6ha5ka"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; };
1767  oppar = derive2 { name="oppar"; version="1.26.0"; sha256="1ikivqi8dw8dsfbv115g79j7pkk37dxw2bwfdk0bmn0y1qnwr60l"; depends=[Biobase GSEABase GSVA]; };
1768  oppti = derive2 { name="oppti"; version="1.12.0"; sha256="0v3fahv6miy3zgaypmnp1f1b84l5zz3s3spimhxl1jbm26safj13"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; };
1769  optimalFlow = derive2 { name="optimalFlow"; version="1.10.0"; sha256="1g47mw0i2gn08f4j7fb190jgb5ap02vaxgs615wnihrnljsihiky"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; };
1770  orthogene = derive2 { name="orthogene"; version="1.4.1"; sha256="1bg73n1z0v5py2w5rdvy49793v4l820fwrjd7gsdi8vf5z06hq52"; depends=[babelgene data_table DelayedArray dplyr ggplot2 ggpubr ggtree gprofiler2 grr homologene jsonlite Matrix patchwork repmis]; };
1771  pRoloc = derive2 { name="pRoloc"; version="1.38.2"; sha256="1q4mhqr49h49alydsbzvakdmk9xd6g98spblzzzrwzdh1qh87zsi"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; };
1772  pRolocGUI = derive2 { name="pRolocGUI"; version="2.8.0"; sha256="0s6pyim5b3qm12ig8amkrf0r5clpk6021b08iw9jfc60qg68hmr2"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; };
1773  packFinder = derive2 { name="packFinder"; version="1.10.0"; sha256="1vg5pmra6l75qx8q4pcvfxiz8rcagh9syca5r5xbzi1gwrj4mgvs"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; };
1774  padma = derive2 { name="padma"; version="1.8.0"; sha256="02i67ck4wnb7jp88bwnx763ijk7ayk69jrr0n0vzfgr408zvv4ir"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; };
1775  pageRank = derive2 { name="pageRank"; version="1.8.0"; sha256="00irmzaj7d2hdyc3lf1n2rpl7adsff4hjxxxc0ln1h2lbwhzbm90"; depends=[GenomicRanges igraph motifmatchr]; };
1776  paircompviz = derive2 { name="paircompviz"; version="1.36.0"; sha256="1nrxn494is198j1yc3janhf8d1vh772k5k5x3qfs75wcz1vwcihh"; depends=[Rgraphviz]; };
1777  pairkat = derive2 { name="pairkat"; version="1.4.0"; sha256="19z3ymlm93rl9fqcax9m4l7hayqp4vm38lcw9kk3k9pya2yrv8ry"; depends=[CompQuadForm data_table igraph KEGGREST magrittr SummarizedExperiment tibble]; };
1778  pandaR = derive2 { name="pandaR"; version="1.30.0"; sha256="057hcmgzcp15l8ylgw1rjh5vldsdz6wvf78q3j2m32iw2xrma262"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; };
1779  panelcn_mops = derive2 { name="panelcn.mops"; version="1.20.0"; sha256="1wr6sxky839plyshd4yqfsj08v1vqfk0g1z0wbb645n8cn43zawn"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; };
1780  panp = derive2 { name="panp"; version="1.68.0"; sha256="17jci5fikyjwkd9h9rysiag8zkzckw3w0z3rxkv6gvazlmiqnyrn"; depends=[affy Biobase]; };
1781  pareg = derive2 { name="pareg"; version="1.2.0"; sha256="1b5ymhnznjx00vf4y09y2fw75czsd6g75bin4f6h33lpidl8z38x"; depends=[DOSE dplyr furrr ggplot2 ggraph glue igraph keras magrittr Matrix matrixLaplacian nloptr progress proxy purrr reticulate rlang shadowtext stringr tensorflow tfprobability tibble tidygraph tidyr]; };
1782  parglms = derive2 { name="parglms"; version="1.30.0"; sha256="1c4lhc1ixb765rqkshzlnjqbfx9smqgn40lnizhg84624jcbfmxc"; depends=[BatchJobs BiocGenerics doParallel foreach]; };
1783  parody = derive2 { name="parody"; version="1.56.0"; sha256="12i5g4ai7a0p81kvqvz1qw099cy3g71n69pij8w760r3jn0c9ilw"; depends=[]; };
1784  pathRender = derive2 { name="pathRender"; version="1.66.0"; sha256="08g645cjzm4ayj7bxsdlh776h4yg761iqbqs1xzh7ifim6ibzh6f"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; };
1785  pathVar = derive2 { name="pathVar"; version="1.28.0"; sha256="1ygydyynfj5bqjkrrikxxqhj4bvnrif1hy0csfhm9dj19rwb891n"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; };
1786  pathifier = derive2 { name="pathifier"; version="1.36.0"; sha256="158dblhgx10wi78k8y48g9x7rw70pydc6bjrx65nzkl1h6i4km9s"; depends=[princurve R_oo]; };
1787  pathview = derive2 { name="pathview"; version="1.38.0"; sha256="0p7cdq03863zpw009prs1yh3gps1kw135anjfq6wpdkwza7xy4py"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; };
1788  pathwayPCA = derive2 { name="pathwayPCA"; version="1.14.0"; sha256="1ss71zs4jshvl3i2li0jfny5xr4lq9p25hbcm1kznpx3l9g9lklj"; depends=[lars survival]; };
1789  paxtoolsr = derive2 { name="paxtoolsr"; version="1.32.0"; sha256="02cwf2sypdf4fiyns1vfqy3djn6plq9w0zsisl2xlyrln7apmsl1"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; };
1790  pcaExplorer = derive2 { name="pcaExplorer"; version="2.24.0"; sha256="0gs4az4h5mwnr3s8fq7im5p3mm4mhc0x5amjr2badqkw1fih3jp7"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; };
1791  pcaMethods = derive2 { name="pcaMethods"; version="1.90.0"; sha256="1cjmkfpbbfzkx6bi3r9jjx54iwkm4gl8hqa1776hxicq2x2c83s4"; depends=[Biobase BiocGenerics MASS Rcpp]; };
1792  pcxn = derive2 { name="pcxn"; version="2.20.0"; sha256="04h3nmm3xmzlgzqm6wnlw4mzhazy0ngbif9w35y9caazf2d0f7k8"; depends=[pcxnData pheatmap]; };
1793  pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.62.0"; sha256="06gplxjpkv9hkcvf536hr3w5fj3gfdc3klfxf7d15ivy4szr0nm5"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
1794  peakPantheR = derive2 { name="peakPantheR"; version="1.12.2"; sha256="0fdpg17m4dsq53nynbqw08i3qiplvsm0bzaj6bcslr5rc2psnpxy"; depends=[bslib doParallel DT foreach ggplot2 gridExtra lubridate minpack_lm MSnbase mzR pracma scales shiny shinycssloaders stringr XML]; };
1795  peco = derive2 { name="peco"; version="1.10.0"; sha256="1pmq3rag4qn62yicrafl5yrkhqb383iz5jv5d6v9fsf4jjs1048j"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; };
1796  pengls = derive2 { name="pengls"; version="1.4.0"; sha256="1cmpwdq1b5sz1nwvzh25xmv5x37dcnhxz5i7fwjyqa9my2m0r6is"; depends=[BiocParallel glmnet nlme]; };
1797  pepStat = derive2 { name="pepStat"; version="1.32.0"; sha256="06m1ny2wa41sfaz9inmj2wi58j6qd49ncd9yx79hkrh3zymz0fc4"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; };
1798  pepXMLTab = derive2 { name="pepXMLTab"; version="1.32.0"; sha256="13bwyxlf8nx86ldzj01qlfba6yh75pzb1kjkpi7p7hs1b0yvb5xp"; depends=[XML]; };
1799  periodicDNA = derive2 { name="periodicDNA"; version="1.8.0"; sha256="03wdxbgsrj2c7j3fgxigjbq349y5c8cw80xvb5ja7lbi1isfb785"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; };
1800  pgca = derive2 { name="pgca"; version="1.22.0"; sha256="0bcq1qks87jjgd2bwpds6xvcvidcvl9pq53mi0dafihgd0s2ycfn"; depends=[]; };
1801  phantasus = derive2 { name="phantasus"; version="1.18.4"; sha256="0rjn66xjkr57w4nsjczxrw3hw90r9zfwqbmhs8pw4y1hd7j1alhi"; depends=[AnnotationDbi assertthat Biobase ccaPP curl data_table DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; };
1802  phemd = derive2 { name="phemd"; version="1.14.1"; sha256="18i2qps2r8h9fqln9gm0wz373xg3lfkgb3my8wk4w944h3an6280"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; };
1803  phenoTest = derive2 { name="phenoTest"; version="1.46.0"; sha256="0rcgbnqglfs9asyrssnhy7h99kikmnr7s1827y8q2agq3pl96q13"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; };
1804  phenomis = derive2 { name="phenomis"; version="1.0.2"; sha256="15lk3wapaaqqrlp02b2cvdlx8dgcvc3vjsfv8i70qh89rljialf8"; depends=[Biobase biodb biodbChebi data_table futile_logger ggplot2 ggrepel htmlwidgets igraph limma MultiAssayExperiment MultiDataSet plotly PMCMRplus ranger RColorBrewer ropls SummarizedExperiment tibble tidyr VennDiagram]; };
1805  phenopath = derive2 { name="phenopath"; version="1.22.0"; sha256="0p2lh858ykhqz0zj4h1vmjd27szwkrlswanapz4shhmvb4plrlbv"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; };
1806  philr = derive2 { name="philr"; version="1.24.0"; sha256="0k93rl2wm9hzp9bcq2v35hn1p4wy8xarb5rzl92wa5w3fj0j4nlw"; depends=[ape ggplot2 ggtree phangorn tidyr]; };
1807  phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.22.0"; sha256="1gap3ihi1xymfp3nymxss4fnhyrpzbva29ki6wdrsizr188d7b0k"; depends=[matrixStats plyr]; };
1808  phyloseq = derive2 { name="phyloseq"; version="1.42.0"; sha256="07zi059v6zwrm31qwc7fmg35fwqlqfb6c30wwj9q4m2y67srnskk"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; };
1809  piano = derive2 { name="piano"; version="2.14.0"; sha256="10bq5k93gx35ysi7ja3821scrn455cyy8syc6aivaz00hcf7mzd8"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; };
1810  pickgene = derive2 { name="pickgene"; version="1.70.0"; sha256="0f6p41ryssw50il1hys6nhm818yzm4ppbksqm0mm7v6knk0mywzi"; depends=[MASS]; };
1811  pipeComp = derive2 { name="pipeComp"; version="1.8.0"; sha256="1nkfhza6nn0gzlfpg0c24rysz43vkx9syaccsrsn3a9i3vm76jh5"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; };
1812  pipeFrame = derive2 { name="pipeFrame"; version="1.14.0"; sha256="1wa06z8q7cxjaaq6fjvs69hd1yrl8s0gjn0733drrwsvsclp43ay"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; };
1813  pkgDepTools = derive2 { name="pkgDepTools"; version="1.63.0"; sha256="10q0z1ps073py82zqii4sfdhnpvcyj4sx1yx3lzy5c41l8py6lag"; depends=[graph RBGL]; };
1814  planet = derive2 { name="planet"; version="1.6.0"; sha256="0260kdkambx29bl449a8ydysw99gq5pydaj8dq9bpn7p9rqd29xs"; depends=[dplyr magrittr tibble]; };
1815  plethy = derive2 { name="plethy"; version="1.36.0"; sha256="09929w6rd84hvz6fiydd5v0php9gvbvxgvsnxvkzwyxfmmmx1dzr"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; };
1816  plgem = derive2 { name="plgem"; version="1.70.0"; sha256="0hnhfdrlg4907dc4s17cy4kgmq5nr616f1wi7jn72acxwqfl4bk8"; depends=[Biobase MASS]; };
1817  plier = derive2 { name="plier"; version="1.68.0"; sha256="116d55v0jwlb11imac8swi7l4prn829sq2jvr1iqsijb7vqlvqli"; depends=[affy Biobase]; };
1818  plotGrouper = derive2 { name="plotGrouper"; version="1.16.0"; sha256="19d4rgrvk96fm1w0iqx0nyfxgxkwh6xmvgw8bxj7rf8z5qmin9hm"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; };
1819  plotgardener = derive2 { name="plotgardener"; version="1.4.2"; sha256="0c9n5hj3ib3nz3qc8jb2hvbl72c5pjpiny9hrygcw52aikj2wwjy"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr]; };
1820  plyranges = derive2 { name="plyranges"; version="1.18.0"; sha256="0lz43rwj7198s80lj2xk4r3dn3l1cpwxwvln5wz19l9131d8hclv"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; };
1821  pmm = derive2 { name="pmm"; version="1.30.0"; sha256="1yma0zpas34wh8axmq3q8hv3gp5vq9zsjvkbmzqd8mnvmkd4pbkg"; depends=[lme4]; };
1822  pmp = derive2 { name="pmp"; version="1.10.0"; sha256="10307945brcglm0c3ixbbn0icvb9aaclj0fvp1v56c9p2820j4ix"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; };
1823  podkat = derive2 { name="podkat"; version="1.30.0"; sha256="0nd32qksdja1p1q7qcn87l4fyd7cqr8n6zgdqhhl811ag9pviizr"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; };
1824  pogos = derive2 { name="pogos"; version="1.18.0"; sha256="12z4nw4by4ms86m5n92p2a13b8pm88xrg34159pa4qpn874y4g91"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; };
1825  polyester = derive2 { name="polyester"; version="1.34.0"; sha256="16wa4ylipkpk6a1vyaiic1vs73x0xif7ik1w5rrh9mkr16lbdixs"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; };
1826  powerTCR = derive2 { name="powerTCR"; version="1.18.0"; sha256="1d4wcvhkzzvm4g6v70dfx29iwrlry44bymprwir77y2dbwwr142f"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; };
1827  ppcseq = derive2 { name="ppcseq"; version="1.6.0"; sha256="1qywxjk2m8hxazw0238pdwzw2c6p7vhzx1m6bs3dkzn09jwpgav2"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; };
1828  pqsfinder = derive2 { name="pqsfinder"; version="2.14.1"; sha256="0vm65n5dyx2jmizb8s06zxxk7njfz0wvsdzdsaqb4sisf4dqlqi7"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; };
1829  pram = derive2 { name="pram"; version="1.14.0"; sha256="0jxsd9wydj0y5zyfdglh2ik8ba9mzc5y6qw4lpqqwsd0wc99bi94"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
1830  prebs = derive2 { name="prebs"; version="1.38.0"; sha256="0s0ci8dn53b2h9z4vxbwaz58yj8w4s5kzjl5i516gzmhh6s1ss3g"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; };
1831  preciseTAD = derive2 { name="preciseTAD"; version="1.8.0"; sha256="002pnnbllb4bnaf1h1giavs4fbwhc7bdf5202nk734c08si33fi8"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; };
1832  preprocessCore = derive2 { name="preprocessCore"; version="1.60.2"; sha256="0ikxikmz9dy09g726q1wygymm6z2imlgfiizkgh1cl4s0m35fbbd"; depends=[]; };
1833  primirTSS = derive2 { name="primirTSS"; version="1.16.0"; sha256="00h9m37ga3wsbcafg4c338457xqjlmgmhhkcrvm38x39h20kxrqy"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; };
1834  proActiv = derive2 { name="proActiv"; version="1.8.0"; sha256="150n6nglbji1510g6kkq6b7i0nix70c6zahdrr4a6p1dpg15gfgv"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; };
1835  proBAMr = derive2 { name="proBAMr"; version="1.32.0"; sha256="1pn48pmiz6cgc3hjczhpzgld69my7xk37d1k7k37gm0dwzpd85c3"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; };
1836  proBatch = derive2 { name="proBatch"; version="1.14.0"; sha256="079dh61v1dmsasrh5sn6sn1rgi34mavxa1sc1y8x6wqjwabm4w1j"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; };
1837  proDA = derive2 { name="proDA"; version="1.12.0"; sha256="1b1p8sh80x5967rakyq75cj0sz01303w7p05b9irfr69yvfvlj45"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; };
1838  proFIA = derive2 { name="proFIA"; version="1.23.0"; sha256="0y08vj401f45dvgxjwjx94hvd0rk1wljk8n1irpkdafg24gv4fvj"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; };
1839  procoil = derive2 { name="procoil"; version="2.26.0"; sha256="1ncls2bgdaaq1kc728p5ay95ypm5byyhpzjck34hfpq867lp7x7m"; depends=[Biostrings kebabs S4Vectors]; };
1840  profileScoreDist = derive2 { name="profileScoreDist"; version="1.26.0"; sha256="0bc2y8xy4nfainz7s2phmhmdpii1ws7k4cylvqjmr52fnssnxyl3"; depends=[BiocGenerics Rcpp]; };
1841  profileplyr = derive2 { name="profileplyr"; version="1.14.1"; sha256="0r8rlqk4xl2y2z74vzxqxxg4x7scs5ysnywpd98phfkg8v5g8zdq"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; };
1842  progeny = derive2 { name="progeny"; version="1.20.0"; sha256="0f5sfi9r9dr6w3xmspsbzby8dpza8x7djif7p2h6l99kwkf68jsb"; depends=[Biobase decoupleR dplyr ggplot2 ggrepel gridExtra reshape2 tidyr]; };
1843  projectR = derive2 { name="projectR"; version="1.14.0"; sha256="08abn5ghixlj4sw8ibfnd9ngs0kvgyc8g7p54wm8q1k45vknvszm"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; };
1844  protGear = derive2 { name="protGear"; version="1.2.0"; sha256="0vk1h7zp9hvzilvwdq4346d55axcwbsvjp3vpzwnsjdidszs7q7r"; depends=[Biobase data_table dplyr factoextra FactoMineR flexdashboard genefilter GGally ggplot2 ggpubr gtools htmltools kableExtra Kendall knitr limma magrittr MASS pheatmap plotly plyr purrr readr remotes rlang rmarkdown shiny shinydashboard styler tibble tidyr vsn]; };
1845  proteasy = derive2 { name="proteasy"; version="1.0.0"; sha256="186g1g5c4i1pdgqc1nwdxlm1nwzggvqswa0ny0195kgqd5ifw5j4"; depends=[AnnotationFilter data_table EnsDb_Hsapiens_v86 EnsDb_Mmusculus_v79 EnsDb_Rnorvegicus_v79 ensembldb Rcpi stringr]; };
1846  proteinProfiles = derive2 { name="proteinProfiles"; version="1.38.0"; sha256="0a4nwd9dabl3l8bx9fq4dfmqnvmhf8lj832kiswbdb0p8q3dhqvb"; depends=[]; };
1847  psichomics = derive2 { name="psichomics"; version="1.24.0"; sha256="16i4w3f31qj5n0hcqbli65c3hqf8wx8vdc3sa1axjazrdbjj02sd"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; };
1848  psygenet2r = derive2 { name="psygenet2r"; version="1.30.0"; sha256="00isn3avis6j2hdpamy5ps8lvmv6h93cwaimnvhcvnanb5wwksxr"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; };
1849  ptairMS = derive2 { name="ptairMS"; version="1.6.0"; sha256="0gmzmqqq9w3a9m3nkiv9j7bhqk7yx3vg9d5cqhr8n64yh97nq06f"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; };
1850  puma = derive2 { name="puma"; version="3.40.0"; sha256="1wdn5mgfig1pa153j2z6xa1k7qvha84yyyjc5a7yisrfnfrc9lcx"; depends=[affy affyio Biobase mclust oligo oligoClasses]; };
1851  pvac = derive2 { name="pvac"; version="1.46.0"; sha256="0ahcgw6kvkq0lrx4sbv902yz3gdkygxsqkd18kf45r0jzwd92k2s"; depends=[affy Biobase]; };
1852  pvca = derive2 { name="pvca"; version="1.38.0"; sha256="1cpyxgw1ynq3dms5yvcwaqd3s55ky80dgy811nl226mji278v9cl"; depends=[Biobase lme4 Matrix vsn]; };
1853  pwOmics = derive2 { name="pwOmics"; version="1.30.0"; sha256="1mklwy9p6miwzvcjzin5q0qcg9625bmbj5hi9dvm6cq48r0x5gwp"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; };
1854  pwrEWAS = derive2 { name="pwrEWAS"; version="1.12.0"; sha256="1y8knyl0axnbidkg1z9n1dmchdb79ixr7d6m1g2zhlzp10kmi4pk"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; };
1855  qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.16.1"; sha256="0jzk0h6lll7yxmiplrk0rhx5pvhq8jjifhi2fj4nyskx1brsnnfh"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; };
1856  qckitfastq = derive2 { name="qckitfastq"; version="1.14.0"; sha256="0220r27adgm8mj348602hzgrbj8f94d0xbcrfg9r5sjaajqbmf8w"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; };
1857  qcmetrics = derive2 { name="qcmetrics"; version="1.36.0"; sha256="1ab6w3ghalgjarkq91ci85dwpwp1dqdsj2m9adlmx05wpljg9qc4"; depends=[Biobase knitr pander S4Vectors xtable]; };
1858  qmtools = derive2 { name="qmtools"; version="1.2.0"; sha256="19zn0q493vn45wllzbzqfgnazr5x6ik2hvh7pay3s95421vls1bd"; depends=[ggplot2 heatmaply igraph MsCoreUtils patchwork rlang scales SummarizedExperiment VIM]; };
1859  qpcrNorm = derive2 { name="qpcrNorm"; version="1.56.0"; sha256="0am89s61dzzycnih78ywnp955yn2jw728i2r8f4qb37asjbaf8ah"; depends=[affy Biobase limma]; };
1860  qpgraph = derive2 { name="qpgraph"; version="2.32.2"; sha256="0lcgskwpd5mqdkr34icf2cyq79yd0g3kqis7axsfdxhgnl76kxh8"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; };
1861  qrqc = derive2 { name="qrqc"; version="1.52.0"; sha256="0411477y7nazlwbz3pfszr1wfas6qd0g0iz0p9pmq16dw8pzkgg6"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; };
1862  qsea = derive2 { name="qsea"; version="1.24.0"; sha256="1x3xv6r4qf8c3swycrmh83cigblsg37wjgxlw86gd78a58q84sim"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; };
1863  qsmooth = derive2 { name="qsmooth"; version="1.14.0"; sha256="0rgwvcydgmbj16bgxrs5yy1i4vikl9pakfdk6jxacr5p85v9ln07"; depends=[Hmisc SummarizedExperiment sva]; };
1864  qsvaR = derive2 { name="qsvaR"; version="1.2.0"; sha256="1g0ib16vflc3ncc8drq051r33cd0lavn7y7zw1xskmijxqxymkqh"; depends=[ggplot2 SummarizedExperiment sva]; };
1865  quantiseqr = derive2 { name="quantiseqr"; version="1.6.0"; sha256="0nxr4h3zwbvi80b5snz6diqm68w7dix0zk5p0zqp28nh1l45cl4w"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; };
1866  quantro = derive2 { name="quantro"; version="1.32.0"; sha256="0f274wh0w6nyipac05y6s2m2p60vkls5j4fwa5bc419j68h4znnz"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; };
1867  quantsmooth = derive2 { name="quantsmooth"; version="1.64.0"; sha256="1adwws3brb01d4g6yidipnd8akkiyc3gpdr876hy57qnmcq8xipp"; depends=[quantreg]; };
1868  qusage = derive2 { name="qusage"; version="2.32.0"; sha256="1k2437hpds42ps3qfj828qv3wxw7w3xkhi6zk7fp24sfbq959nf5"; depends=[Biobase emmeans fftw limma nlme]; };
1869  qvalue = derive2 { name="qvalue"; version="2.30.0"; sha256="1dsia1c9ir989aqrgl5j5v4bysm3pyw9225yrcajiwgl8fxymph4"; depends=[ggplot2 reshape2]; };
1870  r3Cseq = derive2 { name="r3Cseq"; version="1.44.0"; sha256="1w2brdw6w3fws6p92k6n9bivzrfwa06iwsdzkliy3z4dn13mc3rv"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; };
1871  rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.38.0"; sha256="01b5sbh1cdri7fj5ffhmpby3h4qg2lgfyn0jg4zdv8rcj6gagcvw"; depends=[data_table XML]; };
1872  rCGH = derive2 { name="rCGH"; version="1.28.0"; sha256="0r4jj34p8qinfsl8yvcyijkrcap2ik5qfdyl43az1x13c57724mk"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; };
1873  rDGIdb = derive2 { name="rDGIdb"; version="1.24.0"; sha256="0ghj9712f28y4afgdnpvf11kxi5nghis1rgppx3wfck566yi7s7h"; depends=[httr jsonlite]; };
1874  rGADEM = derive2 { name="rGADEM"; version="2.46.0"; sha256="070i3jdq8b5w7k42xw2fc3vcmv312i19fa1am4fbk3g3ssnm61p3"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; };
1875  rGREAT = derive2 { name="rGREAT"; version="2.0.2"; sha256="1vmm7s5p8wqz1r8g1hy1l3mra3kkf76qgy5jkf84jxz7pi0clbld"; depends=[AnnotationDbi circlize digest doParallel DT foreach GenomeInfoDb GenomicFeatures GenomicRanges GetoptLong GlobalOptions GO_db IRanges org_Hs_eg_db progress RColorBrewer Rcpp RCurl rjson S4Vectors shiny TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; };
1876  rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.4.0"; sha256="0mj9md7cv1i206a0b3pqmkq9frg5k6k22hqjbsmvjvsql3ir9gcl"; depends=[imager reticulate rGenomeTracksData]; };
1877  rRDP = derive2 { name="rRDP"; version="1.32.0"; sha256="1fpj6syb1k8kababm7bzgkr2qqqx83vnfm9dnr577yfxldbpfjb6"; depends=[Biostrings]; };
1878  rSWeeP = derive2 { name="rSWeeP"; version="1.10.0"; sha256="16r6qfphaiwjvwmfxbaxdlfmc5bjyx2n7anlsavfgvh00jp31hm2"; depends=[pracma]; };
1879  rScudo = derive2 { name="rScudo"; version="1.14.0"; sha256="1bk7w1rb87j6c3280r6bwnvfhfzdv0ck9g96y0a8k1g297gvyvcc"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; };
1880  rTRM = derive2 { name="rTRM"; version="1.36.0"; sha256="11dp7vz1343hmaa7lly5m9h9fx94cpqqhsrvbb6vy57bh8nb6v4v"; depends=[AnnotationDbi DBI igraph RSQLite]; };
1881  rTRMui = derive2 { name="rTRMui"; version="1.36.0"; sha256="1gindmnq5vkapmfjpy9hglbk79g0s1sgzdljmhn3m5925h2al4k0"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; };
1882  rWikiPathways = derive2 { name="rWikiPathways"; version="1.18.1"; sha256="1zh6yz49s4jdpgg17dkkjv32fkp4zvdrcljfpbysbvc9lplrlj65"; depends=[data_table httr RCurl rjson tidyr XML]; };
1883  rain = derive2 { name="rain"; version="1.32.0"; sha256="0zlb52z0wk6057ph12lj7313bfkpbn502568cgdwify8s6q9g8ms"; depends=[gmp multtest]; };
1884  rama = derive2 { name="rama"; version="1.72.0"; sha256="0i6crxnzhwxnc55xh2rv36jfwh4bd30alw1f05ixdrxwqwsslbpy"; depends=[]; };
1885  ramr = derive2 { name="ramr"; version="1.6.0"; sha256="1rn5jvrcl3823124iwwbrjx89yyp3yflhlvjwnf6jldvm5bwqwpz"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; };
1886  ramwas = derive2 { name="ramwas"; version="1.22.0"; sha256="1qrsv88q18aqfgznli3y54n3ml3f3fc888kipdqj1akxj70fxlsm"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; };
1887  randPack = derive2 { name="randPack"; version="1.44.0"; sha256="15afb49v7fjhlmnm9g2vnjcql288qsxlc0vyyki4m9w24kn8pvsa"; depends=[Biobase]; };
1888  randRotation = derive2 { name="randRotation"; version="1.10.0"; sha256="1siw6y3izcaw84pccxa1lklcl9y16hay4vn1nippqv47bd1ynawv"; depends=[Rdpack]; };
1889  rawrr = derive2 { name="rawrr"; version="1.6.1"; sha256="06z294b659yly7jshb1dcaqdxjf8sxnq95qhzcxn2w2hz3v6lfz0"; depends=[]; };
1890  rbsurv = derive2 { name="rbsurv"; version="2.56.0"; sha256="0icqp84ppmj67vx0w69b7lh437fhydp6y8fi50qj6j8m6la4xr5k"; depends=[Biobase survival]; };
1891  rcellminer = derive2 { name="rcellminer"; version="2.20.0"; sha256="02nxyqr90izpzmvwi3pighnpf82m5b8rma1l2y24cnrymhrijmji"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; };
1892  rebook = derive2 { name="rebook"; version="1.8.0"; sha256="0albrc12i00xwwk7ck1f07vxn0i53pzdhvwgx2x64clz4z2pqhxv"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; };
1893  receptLoss = derive2 { name="receptLoss"; version="1.10.0"; sha256="0vzikln11ychk9sx7wi8mpb2vqdh98by308jj4773qnk5flyg7b1"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; };
1894  reconsi = derive2 { name="reconsi"; version="1.10.0"; sha256="1hzwjmnbkdb4v8nvsk06vmyh5hm1snjn1a2q21jingppjs0dzvik"; depends=[ggplot2 ks Matrix matrixStats phyloseq reshape2]; };
1895  recount = derive2 { name="recount"; version="1.24.1"; sha256="0ryxz7kf52rwwri1bbpfpn67ivcx3fxrnym430d4nv6j1qfb1kh4"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; };
1896  recount3 = derive2 { name="recount3"; version="1.8.0"; sha256="1syfy713ybsl8vlvfag6i85icv34k1y0f6g6v168snc2z1xq4yrd"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; };
1897  recountmethylation = derive2 { name="recountmethylation"; version="1.8.6"; sha256="1nrav24pq3jwi9jmy7b0h799q6bnw1sjd8a0gca3c1pn9zvg8xqn"; depends=[basilisk BiocFileCache DelayedMatrixStats HDF5Array minfi R_utils RCurl reticulate rhdf5 S4Vectors]; };
1898  recoup = derive2 { name="recoup"; version="1.26.0"; sha256="00ia9a9kqmcn329pvipaz15xfci6rw4377hpf7gnxhjkxx4b1rna"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; };
1899  regionReport = derive2 { name="regionReport"; version="1.32.0"; sha256="0ilqm51dnhv5bhda7ljdn1x4hwr4infpngsvwn7wvssvsgp1pcz0"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; };
1900  regioneR = derive2 { name="regioneR"; version="1.30.0"; sha256="01anwhz0axdl0g2zsaqz1qdxswxrryarbw6pmn5kmlpz4ipiq049"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; };
1901  regioneReloaded = derive2 { name="regioneReloaded"; version="1.0.0"; sha256="1m04wsciqdqjsfqkyb9rpq44jlcwiq0chr441jprg5h905xwcyda"; depends=[cluster ggplot2 ggrepel RColorBrewer regioneR reshape2 Rtsne scales umap]; };
1902  regsplice = derive2 { name="regsplice"; version="1.24.0"; sha256="06pp0m5y7y7f6bbwrgln76kskffy1mhcz1546657bsaqr67iaxmz"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; };
1903  regutools = derive2 { name="regutools"; version="1.10.0"; sha256="198pypw448vp3wa17xw5ygvpidw4fry3qyf5q0z5rv5aq7dwd0ay"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; };
1904  restfulSE = derive2 { name="restfulSE"; version="1.20.0"; sha256="10v569icyhnqqmplx21na6jyv5ipf5fbgygpd05fbjy447p8fhay"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; };
1905  rexposome = derive2 { name="rexposome"; version="1.20.1"; sha256="045cpwd6g6dybzj8vg7hwyg9m2yj23gb63ggmzvkzn1d8mzhc09l"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; };
1906  rfPred = derive2 { name="rfPred"; version="1.36.0"; sha256="13nmym6qvfxp85n9qh597vz4w0c4cvpqi9jj68dqvc2z0dhlcij7"; depends=[data_table GenomeInfoDb GenomicRanges IRanges Rsamtools]; };
1907  rfaRm = derive2 { name="rfaRm"; version="1.10.2"; sha256="0i7w6062dl9plf839ildynldgbc1gjis1hw3y2flvkj9q5b32iar"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; };
1908  rgoslin = derive2 { name="rgoslin"; version="1.2.0"; sha256="0zcxd91qsz0p8z10cm1d2y81cj5ga7002p5sxzrzay33zcaa0f59"; depends=[dplyr Rcpp]; };
1909  rgsepd = derive2 { name="rgsepd"; version="1.30.0"; sha256="1bk6i336x2ng1kvgywcs18v6sn47cndahfbpcagl17x77pcna7by"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots org_Hs_eg_db SummarizedExperiment]; };
1910  rhdf5 = derive2 { name="rhdf5"; version="2.42.0"; sha256="1vxs227d1295fz8irr6fsv603cw96a801j8njhblvs0cry38d087"; depends=[rhdf5filters Rhdf5lib]; };
1911  rhdf5client = derive2 { name="rhdf5client"; version="1.20.0"; sha256="0wf0mv1kc3gd7vpazdip9253c1727ns9xysqfipg9lf1ydjny1fq"; depends=[DelayedArray httr R6 rjson S4Vectors]; };
1912  rhdf5filters = derive2 { name="rhdf5filters"; version="1.10.1"; sha256="14rkr0fisy7qrvjikpnwxwag79205hdxy6nkpwz501li4fr1rbnp"; depends=[Rhdf5lib]; };
1913  riboSeqR = derive2 { name="riboSeqR"; version="1.32.0"; sha256="0la8kmxxh5jnqsrmmvyhi313bjdbqkiq16hcxar6mgyjhxlsm610"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; };
1914  ribor = derive2 { name="ribor"; version="1.10.0"; sha256="16ikb3815cmwagjjjcv8rmshybpjl0vfc20mpl5xr92dzbnn7jj2"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; };
1915  ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.10.0"; sha256="04r0nhjfm659i5n2351f67dghjm9jrfvcnzbf7ylqgnhym4ibzrn"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; };
1916  rifi = derive2 { name="rifi"; version="1.2.2"; sha256="1n21791r1azxajr5hvj1z73x9wmk5hlc15dsf3px47bhfbqv1bxx"; depends=[car cowplot doMC dplyr egg foreach ggplot2 nls2 nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble]; };
1917  rmelting = derive2 { name="rmelting"; version="1.14.0"; sha256="0j3k68ms5iarqr7c0haijgxkqai5282awxbjg7cwsman5658l30y"; depends=[Rdpack rJava]; };
1918  rmspc = derive2 { name="rmspc"; version="1.4.0"; sha256="0lcygxazp137v9m3l7vkp4vpc9v0ahggvy4k53nx8sp84nljgpbh"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; };
1919  rnaEditr = derive2 { name="rnaEditr"; version="1.8.0"; sha256="1sk69a2cnnjfm2a9fdyj07zkgnjnzlpx2rdbz2lihck3pf3b63l3"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; };
1920  rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.28.0"; sha256="1znbydb4pdmchrwr94r87v3k6zmdh6f2d5vrs3wvs4ak343k86x4"; depends=[RColorBrewer]; };
1921  roar = derive2 { name="roar"; version="1.34.0"; sha256="1bf3ii3zaxkzw5y1wc5c474bq4cgavb67df54czmd3zi1lbhzphd"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; };
1922  rols = derive2 { name="rols"; version="2.26.0"; sha256="0y7r7anz68jl8f6q2v8f4gh32v946xkkk3kzgd38y8lklwdmrf0w"; depends=[Biobase BiocGenerics httr jsonlite progress]; };
1923  ropls = derive2 { name="ropls"; version="1.30.0"; sha256="0vjwci0z83b56q1wi1k00926f0vh3220a44m0zzfxg2cm5j3fwxb"; depends=[Biobase ggplot2 MultiAssayExperiment MultiDataSet plotly SummarizedExperiment]; };
1924  rprimer = derive2 { name="rprimer"; version="1.2.0"; sha256="0067jsxs627fmxm8zd5zpycgcyir7mkcph91nn2kawxkhjgxx9wk"; depends=[Biostrings bslib DT ggplot2 IRanges mathjaxr patchwork reshape2 S4Vectors shiny shinycssloaders shinyFeedback]; };
1925  rpx = derive2 { name="rpx"; version="2.6.3"; sha256="1f0qhnqf8ak415xpqgyhsd2dgblg671ivz600aqcg6k9hy903jgy"; depends=[BiocFileCache curl jsonlite RCurl xml2]; };
1926  rqt = derive2 { name="rqt"; version="1.24.0"; sha256="063prv68avs1nwjwvp3685v1n8xvcpg7zsiy613mqg2k3fp3hjcj"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; };
1927  rqubic = derive2 { name="rqubic"; version="1.44.0"; sha256="0cmwx499a3s6a336afzx0h2mkhbxsrh4gpd486y5wxsbq2bva7zh"; depends=[biclust Biobase BiocGenerics]; };
1928  rrvgo = derive2 { name="rrvgo"; version="1.10.0"; sha256="0zh621sgy56phjm6h5733845js56s33zrww8z62l31v2yg0ff3zq"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap umap wordcloud]; };
1929  rsbml = derive2 { name="rsbml"; version="2.56.0"; sha256="1syg49qz6vwzyw2zrxwrfb7kzgk0lim1q674f7mfvjah1fnv8bgc"; depends=[BiocGenerics graph]; };
1930  rsemmed = derive2 { name="rsemmed"; version="1.8.0"; sha256="0y7np05hcq7rhr0c56yiv4y1xqk7kjrlbwad0rqgpnlfscxclcav"; depends=[dplyr igraph magrittr stringr]; };
1931  rtracklayer = derive2 { name="rtracklayer"; version="1.58.0"; sha256="1qxr0ffmmkbfkbijz7pbks3kvms9k4a5rmma4j9p7ar477fxvlmk"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; };
1932  runibic = derive2 { name="runibic"; version="1.20.0"; sha256="0g7hqgsq7h0338fmlb4ipv1kwiijcrfajhgwchn5akhspvsch269"; depends=[biclust Rcpp SummarizedExperiment testthat]; };
1933  sRACIPE = derive2 { name="sRACIPE"; version="1.14.0"; sha256="079lmgi6az5ri05lvca58msh678r7k1xwk3xhq8iffqh87wy6cmj"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; };
1934  sSNAPPY = derive2 { name="sSNAPPY"; version="1.2.5"; sha256="17z0iz6jr0nx14s4d80j94jdk78af4i1zkin24z56fas28sm2ka8"; depends=[BiocParallel dplyr edgeR ggforce ggnewscale ggplot2 ggraph graphite igraph magrittr org_Hs_eg_db pheatmap purrr Rcpp RcppArmadillo reshape2 rlang SummarizedExperiment tibble]; };
1935  sSeq = derive2 { name="sSeq"; version="1.36.0"; sha256="1w0iq7pih9z8662wj2lj1xbg66n752mx4g2q33ck5vwdxg10ry4c"; depends=[caTools RColorBrewer]; };
1936  safe = derive2 { name="safe"; version="3.38.0"; sha256="1gza1liz0y2i6f5nnnwbwl99fjp3cr1aknxiy3rmbjydfq8yxbrw"; depends=[AnnotationDbi Biobase SparseM]; };
1937  sagenhaft = derive2 { name="sagenhaft"; version="1.68.0"; sha256="0hh9gkv07qrlnarrj7h579dhisyq01c5jjl3rvq5w086wfy9154m"; depends=[SparseM]; };
1938  sampleClassifier = derive2 { name="sampleClassifier"; version="1.22.0"; sha256="0yvqr3xvji7zj6cw6kdr64k4sr71kpw3vwdv1dgi10ws3ygls65m"; depends=[annotate e1071 ggplot2 MGFM MGFR]; };
1939  sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.8.0"; sha256="0b72lqn394l73ck857dfs7iyxidzcjcy9hfamfy72g4p7804xpan"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; };
1940  sangerseqR = derive2 { name="sangerseqR"; version="1.34.0"; sha256="1i8zxqw48az743q1gziwp1ah7dkvy0gp26sfa2j20i7lard663mw"; depends=[Biostrings shiny]; };
1941  sarks = derive2 { name="sarks"; version="1.10.0"; sha256="1f3yypn7dzjq58jnkv3jc0330mddpapzn1wlvq2crjbh161mxaym"; depends=[binom Biostrings cluster IRanges rJava]; };
1942  satuRn = derive2 { name="satuRn"; version="1.6.0"; sha256="1gldcdnpbxc2bgi5sr3g0cgkfx8gx2jmyadnxzm07zcmi724nsyx"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; };
1943  savR = derive2 { name="savR"; version="1.36.0"; sha256="1b7kjgj2r6lgkdnrq91wcwvwb5an0gfdsbyp7j0pvn2byfm4lply"; depends=[ggplot2 gridExtra reshape2 scales XML]; };
1944  scAlign = derive2 { name="scAlign"; version="1.12.0"; sha256="1mlhxwsfrmhysa5mcyx7vf2jn49snf41yb7xqmyi40wilj9h8qlb"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; };
1945  scAnnotatR = derive2 { name="scAnnotatR"; version="1.4.0"; sha256="0rc035kzbzrxvlcpphzg0yg7q82jvlxpi9xjq8q59hvbpyg1sz93"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; };
1946  scBFA = derive2 { name="scBFA"; version="1.12.0"; sha256="0884s9laa63yf2p9wf66a67ipkc2x075c432x8p96vr326p4h8nf"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; };
1947  scBubbletree = derive2 { name="scBubbletree"; version="1.0.0"; sha256="0ivyp3zf7clr4zbdv2srjv42dx2zvlaq4yprccxb3yimrnmihks6"; depends=[ape future future_apply ggplot2 ggtree patchwork reshape2 scales Seurat]; };
1948  scCB2 = derive2 { name="scCB2"; version="1.8.0"; sha256="1r1iyw7wyvapnzxclrm036jfjnvlgpjpcwg635g0mwa4wyahsxnl"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; };
1949  scClassify = derive2 { name="scClassify"; version="1.10.0"; sha256="0i7r9yiw13lzwvy2vxwkfkj3x7a54gv6r8syxib7qj8yr53nmyiy"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; };
1950  scDD = derive2 { name="scDD"; version="1.22.0"; sha256="0kmnmlzww2xfd04lp9nsh0wkigab9ipgqlsn2jrd77fizpd0kvwg"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; };
1951  scDDboost = derive2 { name="scDDboost"; version="1.0.0"; sha256="066cp50n7cxr7wbcgz0207gh5a6h3lwbpfkn5w17w06k24f3zjkb"; depends=[BH BiocParallel cluster EBSeq ggplot2 mclust Oscope Rcpp RcppEigen SingleCellExperiment SummarizedExperiment]; };
1952  scDataviz = derive2 { name="scDataviz"; version="1.8.0"; sha256="0spw9m2grza3n2ghsw6z534xsd786rmww66l2xz7i37wjfdpv26a"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; };
1953  scDblFinder = derive2 { name="scDblFinder"; version="1.12.0"; sha256="0gslh28rycx0p6a6fmzbsqy1hg2sn3pp5blxgw01qk9f0ank7szi"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray GenomeInfoDb GenomicRanges igraph IRanges MASS Matrix Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; };
1954  scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.18.0"; sha256="04q0132vdcpxkwma91j29pac82fcjgvhhx42ppmxkmdjc3q3adzq"; depends=[dplyr ggplot2 magrittr rlang tibble]; };
1955  scGPS = derive2 { name="scGPS"; version="1.12.2"; sha256="176g5y0dmpxqp0n6cilkcq4yj1ixx7ac7i212vgsxd0wi96n5bq0"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; };
1956  scHOT = derive2 { name="scHOT"; version="1.10.0"; sha256="0d065rg1942ynvzch3d34hjywgscp8wz1c4i71zmxm5rznkpzsxw"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; };
1957  scMAGeCK = derive2 { name="scMAGeCK"; version="1.9.1"; sha256="1i6l8jxrd66aqk3m9212wsi8jqklvs0agsqrllvf9mrh16js4vby"; depends=[ggplot2 Seurat]; };
1958  scMET = derive2 { name="scMET"; version="1.0.0"; sha256="0j6zfb1qlqbvfgfr4nqn43lxwgslaxj3dqd2wbnnmmq7zv2hxmdl"; depends=[assertthat BH BiocStyle coda cowplot data_table dplyr ggplot2 logitnorm MASS Matrix matrixStats Rcpp RcppEigen RcppParallel rstan rstantools S4Vectors SingleCellExperiment StanHeaders SummarizedExperiment VGAM viridis]; };
1959  scMerge = derive2 { name="scMerge"; version="1.14.0"; sha256="0rwhii3ypvv0frbfmlkhyfzwgy2wcrd3kn09w9ikwi8pn8pivcjy"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr igraph M3Drop pdist proxy ruv S4Vectors SingleCellExperiment SummarizedExperiment]; };
1960  scPCA = derive2 { name="scPCA"; version="1.12.0"; sha256="1r84lnhmmhvb4qfmi575gjb2nrd4izaz9f4dzb1k8bmy83fkyfmv"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; };
1961  scPipe = derive2 { name="scPipe"; version="1.20.6"; sha256="1yik05zn5yl2wryi96ssgkgn2yzvh3w11ndprqa2fzlcfhgg4j75"; depends=[AnnotationDbi basilisk BiocGenerics biomaRt Biostrings data_table dplyr DropletUtils flexmix GenomicAlignments GenomicRanges GGally ggplot2 glue hash IRanges magrittr MASS Matrix mclust MultiAssayExperiment org_Hs_eg_db org_Mm_eg_db purrr Rcpp reshape reticulate Rhtslib rlang robustbase Rsamtools Rsubread rtracklayer S4Vectors scales SingleCellExperiment stringr SummarizedExperiment testthat tibble tidyr zlibbioc]; };
1962  scReClassify = derive2 { name="scReClassify"; version="1.4.0"; sha256="0jq5ygm9s2sxh7z7hdrjgzm7kvyba6lrxnva6nv8qvlhkcczfnl0"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; };
1963  scRecover = derive2 { name="scRecover"; version="1.14.1"; sha256="05j2jxsvy2kh0f4b9wwc57n5v1qqibxhyqv00pdm3zfh3drsca4a"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl rsvd SAVER]; };
1964  scRepertoire = derive2 { name="scRepertoire"; version="1.8.0"; sha256="06807wfmj5gdjh55fx2fphalbms3a83mpyrhyigpb2whbr9yzmql"; depends=[doParallel dplyr ggalluvial ggplot2 ggraph igraph plyr powerTCR reshape2 rlang SeuratObject SingleCellExperiment stringdist stringr SummarizedExperiment tidygraph vegan]; };
1965  scShapes = derive2 { name="scShapes"; version="1.4.0"; sha256="1n0y86kd5cf4wz035q1pflifd5c455l2x57vfsfixmn5inixg6g1"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; };
1966  scTGIF = derive2 { name="scTGIF"; version="1.12.0"; sha256="0fx0n7ll5p3fxhd0v5366knpnisrbsadimpd9z0l3zw9818kr12p"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; };
1967  scTHI = derive2 { name="scTHI"; version="1.10.0"; sha256="1x0yhqa7h1gfz1z1hm051b2ml1q8nlc9q0rm1mp38nc23hcjaj7n"; depends=[BiocParallel Rtsne]; };
1968  scTensor = derive2 { name="scTensor"; version="2.8.0"; sha256="0i15w3vl1yydag30kk7q5w95gjksb9ashann73xlp7v3j8ap1apq"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; };
1969  scTreeViz = derive2 { name="scTreeViz"; version="1.4.0"; sha256="19pccz1j8pdx9a155hcs7f28p34zk3m3jaiywsbmxaxxd93bg084"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; };
1970  scanMiR = derive2 { name="scanMiR"; version="1.4.0"; sha256="009i4dkagv0mpmx8k8rdr1sl9n79kayfjj953h11b1x8i9gkshkj"; depends=[BiocParallel Biostrings cowplot data_table GenomeInfoDb GenomicRanges ggplot2 ggseqlogo IRanges S4Vectors stringi]; };
1971  scanMiRApp = derive2 { name="scanMiRApp"; version="1.4.0"; sha256="1cd77fij54iadbwlyl3l1w6fma85y2n9azmg5mbqr0sa977swgqr"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard shinyjqui waiter]; };
1972  scater = derive2 { name="scater"; version="1.26.1"; sha256="1mjnf2y41lvni77g9hyw8qlvlsi5nxv5ha0fnch1kmw9814nycq3"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ggbeeswarm ggplot2 ggrastr ggrepel gridExtra Matrix pheatmap RColorBrewer RcppML rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment uwot viridis]; };
1973  scatterHatch = derive2 { name="scatterHatch"; version="1.4.0"; sha256="0fig318c9njgl3ficp7fnriip3k9ig72g0r2jvp9q7aahjap586v"; depends=[ggplot2 plyr spatstat_geom]; };
1974  sccomp = derive2 { name="sccomp"; version="1.2.1"; sha256="184hifrapg333mys9mjhb4rjnaj5945hmmkqgb8mibp9a4x4rqdz"; depends=[BH boot dplyr forcats ggplot2 ggrepel glue lifecycle magrittr patchwork purrr Rcpp RcppEigen RcppParallel readr rlang rstan rstantools scales SeuratObject SingleCellExperiment StanHeaders stringr tibble tidyr tidyselect]; };
1975  scde = derive2 { name="scde"; version="2.26.2"; sha256="08qvqqzzmmk4kc612yjfl6zp8mhif1kfv0xi8x42wpdhjzzzldlp"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; };
1976  scds = derive2 { name="scds"; version="1.14.0"; sha256="0zdf9yf5s0l8ma7d8yhi7bjd964yj84f5h6aq2p0sypjlnc515hd"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; };
1977  schex = derive2 { name="schex"; version="1.12.0"; sha256="08xfbf8yiwzhzi0p1cix5hdnshlib5mg42qpk7ir5667i5lp5l1h"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; };
1978  scifer = derive2 { name="scifer"; version="1.0.0"; sha256="12zd13awjvwpgyinrixr7ys9989m2zs0w009r0nk0mgy0fh8vwhp"; depends=[Biostrings data_table DECIPHER dplyr flowCore ggplot2 gridExtra kableExtra knitr plyr rlang rmarkdown sangerseqR scales stringr tibble]; };
1979  scmap = derive2 { name="scmap"; version="1.20.2"; sha256="00zqvjfn1pqza5gl3jfr10fvcrq6gpw9hfjcxjsm4f5p7ldnhpw0"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; };
1980  scmeth = derive2 { name="scmeth"; version="1.18.0"; sha256="1gqgq6ganjm8madimxbqyw3z2fxq8d3pjhrfjvmkwgd2fzk3wb4a"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; };
1981  scone = derive2 { name="scone"; version="1.22.0"; sha256="0pg09r28xqjlvb6nbswglnmwi05q63fag6rp3sw41g6z8gm5wap7"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; };
1982  scoreInvHap = derive2 { name="scoreInvHap"; version="1.20.0"; sha256="1y0vinj3si683z1d9hfaxfwgn6jshi7h689ixqygqciq63gac5wj"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; };
1983  scp = derive2 { name="scp"; version="1.8.0"; sha256="0n238jfn97y3njgfjqjf0baqr1l5pv2jm5zamyxyrz86p2811flf"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures S4Vectors SingleCellExperiment SummarizedExperiment]; };
1984  scran = derive2 { name="scran"; version="1.26.2"; sha256="0r80k4dsk609l9ha1jl64yhpwnf0x37i28k9largqsffsl6hw0fy"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; };
1985  scruff = derive2 { name="scruff"; version="1.16.0"; sha256="0hg0f8k3mxhz4mk5r6qdhkr5h8rd1zv0x54bm1fq9pfc9vp90b8b"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; };
1986  scry = derive2 { name="scry"; version="1.10.0"; sha256="0vx6fi8hnxms6d3hm3qxkrdx1qpyd7vhwdk7ds98ads070miqr21"; depends=[BiocSingular DelayedArray glmpca HDF5Array Matrix SingleCellExperiment SummarizedExperiment]; };
1987  scuttle = derive2 { name="scuttle"; version="1.8.4"; sha256="04257gl995r575md1n3h2gy502yi6c8x3352l96mib7rdv4yg53f"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; };
1988  sechm = derive2 { name="sechm"; version="1.6.0"; sha256="124dmcksw1yl7p0rwsp1ddlfv3ing56ggkaln421n9jnmj13fv0l"; depends=[circlize ComplexHeatmap matrixStats randomcoloR S4Vectors seriation SummarizedExperiment]; };
1989  segmentSeq = derive2 { name="segmentSeq"; version="2.32.0"; sha256="059q1wr1sfpi7vh7lrkpfzjd8rz19ya837y7hack0i9icygwjmk3"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; };
1990  segmenter = derive2 { name="segmenter"; version="1.4.0"; sha256="05ichsmjn3pklrknc95yz9ghhvwjg0y2jw6wcx2pf4d6iiwg7d5c"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; };
1991  selectKSigs = derive2 { name="selectKSigs"; version="1.10.0"; sha256="1pnqywp3wabd586xhlvxkrjvc1fyl4b0b6945rpz3qbaw1475pa6"; depends=[gtools HiLDA magrittr Rcpp]; };
1992  semisup = derive2 { name="semisup"; version="1.22.0"; sha256="1wn2a86rdvh8p37iifhmsq149j135dyp1h0xr86xfj88ffzj0y9n"; depends=[VGAM]; };
1993  seq2pathway = derive2 { name="seq2pathway"; version="1.30.0"; sha256="0g43693cqqi51fbfr28hbhcmnjam6vvf1llzn1wizbahcchgjvwx"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; };
1994  seqArchR = derive2 { name="seqArchR"; version="1.2.0"; sha256="03j4vff2lp1zzikhfa5sflnc0bd63r72aqim3jdsyrk5ic6355d3"; depends=[BiocParallel Biostrings cli cluster cvTools fpc ggplot2 ggseqlogo MASS Matrix matrixStats prettyunits reshape2 reticulate]; };
1995  seqCAT = derive2 { name="seqCAT"; version="1.20.0"; sha256="0hv0sabc82ak49di42xf7an9csgp9q0d9wkx7d1sjlfm9ayza88z"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; };
1996  seqCNA = derive2 { name="seqCNA"; version="1.44.0"; sha256="08hhjp5prgnr3c2j2r69f5sl2wf5jd1mrdy43b1kmnlpnm3yz16i"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; };
1997  seqLogo = derive2 { name="seqLogo"; version="1.64.0"; sha256="1xlxi1iaqj7iabzbx15j6pk4551dyj6pa6a6qf5ffr3v7k2pmznp"; depends=[]; };
1998  seqPattern = derive2 { name="seqPattern"; version="1.30.0"; sha256="17nvxy8kdc1k0kyf0qny6jp3gzr024q37mmh5x18jjr794hnf9s5"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; };
1999  seqTools = derive2 { name="seqTools"; version="1.32.0"; sha256="0ya3y3zam68zyw7ky2k8nswk4zd8c0fhihyg6qdw43aicisykms2"; depends=[zlibbioc]; };
2000  seqbias = derive2 { name="seqbias"; version="1.46.0"; sha256="0mc6lv7vkch138n46gk1q1hfhv37mfxjij39q36wa0jy7s8cagfa"; depends=[Biostrings GenomicRanges Rhtslib zlibbioc]; };
2001  seqcombo = derive2 { name="seqcombo"; version="1.20.0"; sha256="1q0yfcw30rgnz7l3miy1024vhjlqrhf2w0b3yvs4df6sb2w37q5m"; depends=[ggplot2 igraph yulab_utils]; };
2002  seqsetvis = derive2 { name="seqsetvis"; version="1.18.1"; sha256="06z539vmdn6w2843rz26g16hvznzh64qd2dl0h4acikmb46j0cjk"; depends=[cowplot data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; };
2003  sesame = derive2 { name="sesame"; version="1.16.1"; sha256="01b2a06xz9cggr57m920dh1pylac30l5w8mxq5vcb4jbl1flh6py"; depends=[BiocFileCache BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore readr reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; };
2004  sevenC = derive2 { name="sevenC"; version="1.18.0"; sha256="1xw0whm905zm644iadv7yiqid82pxw46mv0n6m24591hc7p0xjyf"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; };
2005  sevenbridges = derive2 { name="sevenbridges"; version="1.28.0"; sha256="1sfwa4i3ak87wfj04y5gi4a5cw9by27xqv41gz29sgclh61gmpc0"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; };
2006  shinyMethyl = derive2 { name="shinyMethyl"; version="1.34.0"; sha256="1xbadc4xszcqh211r8z0wp417f17aczz834icli17mcsl996ln3a"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; };
2007  shinyepico = derive2 { name="shinyepico"; version="1.6.0"; sha256="00ma5la96w5djjcmz42jc6bzp8b9jk398y0s4sbqg6pkwcw235hd"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; };
2008  sigFeature = derive2 { name="sigFeature"; version="1.16.0"; sha256="0ivfi4cr2lw59cj0c3biqbbc1m3vnv480gmijfk9hx86g60wx5fp"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; };
2009  sigPathway = derive2 { name="sigPathway"; version="1.66.2"; sha256="0k86hlz7zbbw7559bd2sl59pr441kihgwvg8nr75mj8d50n783sy"; depends=[]; };
2010  siggenes = derive2 { name="siggenes"; version="1.72.0"; sha256="0gis34s56y4xa61a9gywjwgd6525ywasa6r4xxhj3rshh1dz5jkv"; depends=[Biobase multtest scrime]; };
2011  sights = derive2 { name="sights"; version="1.24.0"; sha256="1qwm470ysc4jlp6pazpmyb8wpcisv2397328f0x37g5a5vilzx7c"; depends=[ggplot2 lattice MASS qvalue reshape2]; };
2012  signatureSearch = derive2 { name="signatureSearch"; version="1.12.0"; sha256="1wzhli6da0x7126av9jx1qar04wlwx16krzspglfg0c1xagvm7sk"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix org_Hs_eg_db qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment tibble visNetwork]; };
2013  signeR = derive2 { name="signeR"; version="2.0.2"; sha256="1npsa5xkbjchm7gikvz9b8ghrxy5mfikkki7ja71fgavw30jdnj3"; depends=[ada BiocFileCache BiocGenerics Biostrings BSgenome bsplus class clue cowplot dplyr DT e1071 future future_apply GenomeInfoDb GenomicRanges ggplot2 ggpubr glmnet IRanges kknn listenv magrittr MASS maxstat nloptr NMF pheatmap PMCMRplus ppclust pROC proxy pvclust randomForest RColorBrewer Rcpp RcppArmadillo readr reshape2 rtracklayer scales shiny shinycssloaders shinydashboard shinyWidgets survival survivalAnalysis survminer tibble tidyr VariantAnnotation VGAM]; };
2014  signifinder = derive2 { name="signifinder"; version="1.0.0"; sha256="0gbhi9sklknnc4hp2w5wp2bj2rq0hmfqzcx3nqqf78fh00gz5bk5"; depends=[AnnotationDbi BiocGenerics ComplexHeatmap consensusOV DGEobj_utils dplyr ensembldb ggplot2 ggridges GSVA IRanges magrittr matrixStats maxstat openair org_Hs_eg_db patchwork RColorBrewer SummarizedExperiment survival survminer TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene viridis]; };
2015  sigsquared = derive2 { name="sigsquared"; version="1.30.0"; sha256="0xai7gk3kq669ngfdf7cpizaxv42sj50dzvc6xcqkzahn7l3y9pw"; depends=[Biobase survival]; };
2016  similaRpeak = derive2 { name="similaRpeak"; version="1.30.0"; sha256="0ncx8r62lvj0711f37szd9998cfpq5nsw6nq00xvkd781p3jf0gn"; depends=[R6]; };
2017  simpleSeg = derive2 { name="simpleSeg"; version="1.0.2"; sha256="0dd3qp2q7jw6q9hd3zfnzmsccgpnwb5kmgw5zsyp418pl5vh0kas"; depends=[BiocParallel cytomapper EBImage S4Vectors spatstat_geom SummarizedExperiment terra]; };
2018  simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.8.0"; sha256="130x5hy6jzglc6clwanh2kmhw567i802w620ffs3977kjfpjsjgy"; depends=[AnnotationDbi BiocGenerics circlize clue cluster colorspace ComplexHeatmap digest GetoptLong GlobalOptions GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; };
2019  sincell = derive2 { name="sincell"; version="1.30.0"; sha256="0dsl7p18nw7db7g7fx3l4x6mpj4krkxxacl8gddq91xiggjiib1l"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; };
2020  single = derive2 { name="single"; version="1.2.0"; sha256="0dszp2w7qxx4cnlm1bsy89dfmwqmg2fr337wqdbv42cgniyscxwa"; depends=[BiocGenerics Biostrings dplyr GenomicAlignments IRanges reshape2 rlang Rsamtools stringr tidyr]; };
2021  singleCellTK = derive2 { name="singleCellTK"; version="2.8.0"; sha256="03jiqf23f04cvzrrwq29kwd1x84dnv5nf41hbzmi3jd6rjzdnd5s"; depends=[AnnotationHub ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT enrichR ensembldb ExperimentHub fields fishpond ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly plyr R_utils reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq scuttle Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SoupX SummarizedExperiment sva TENxPBMCData tibble TrajectoryUtils TSCAN tximport VAM withr yaml zinbwave]; };
2022  singscore = derive2 { name="singscore"; version="1.18.0"; sha256="10hffcscysv8n1iijn2pqzkn9rhnh0xp07hl9b3688jzi1ydjj3k"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; };
2023  sitadela = derive2 { name="sitadela"; version="1.6.0"; sha256="1vqs5vdj12dll199cmsx6l1brfk36cgmv89lqxgf6bl0570gl6ls"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; };
2024  sitePath = derive2 { name="sitePath"; version="1.14.0"; sha256="06l55v7s8sh2gj687pdp93ffkaw57ad68sbkf616hdr199dfj1la"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; };
2025  sizepower = derive2 { name="sizepower"; version="1.68.0"; sha256="10wsvs54qdvwhpy865dlpjwzq7l1cnsg8hq1vs1jp36vspwwxzrg"; depends=[]; };
2026  skewr = derive2 { name="skewr"; version="1.30.0"; sha256="1dwckg1i55dgz6r19gkvpa1k7j2xdhzr0g408q951npi1hzq1hmb"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; };
2027  slalom = derive2 { name="slalom"; version="1.20.2"; sha256="0hcj8gl86kzg7mwhrir68mfil1z2ik9wiaz5iqb6vadz3s9cn2nx"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; };
2028  slingshot = derive2 { name="slingshot"; version="2.6.0"; sha256="00h9iid2z9r55l4hlaa1q0nkbcfq0f7k2afkw4ymjwhm1b8yqj33"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; };
2029  snapCGH = derive2 { name="snapCGH"; version="1.68.0"; sha256="1zxvl8mkby7yb5kppddag6k9w78d1fm6adx52h4cgrfckn28w64q"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; };
2030  snapcount = derive2 { name="snapcount"; version="1.10.0"; sha256="0y30ndqgld4c5ql8xp68xv3bi92njjqh9jcj2pxvkf7h9r3j8lad"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; };
2031  snifter = derive2 { name="snifter"; version="1.8.0"; sha256="0n39vlfkljckh9hpjwfyxbxd2747ss7y9nxb0hb0188p75q2dfkl"; depends=[assertthat basilisk irlba reticulate]; };
2032  snm = derive2 { name="snm"; version="1.46.0"; sha256="19gxs81i4ghwdjfi86xxsgxniha1wkmm2ivddcv5nhv90d3lai2j"; depends=[corpcor lme4]; };
2033  snpStats = derive2 { name="snpStats"; version="1.48.0"; sha256="14rkrav4iydc85194skdy33sk365pjmmvxxvzaxxh0k9ds009qwx"; depends=[BiocGenerics Matrix survival zlibbioc]; };
2034  soGGi = derive2 { name="soGGi"; version="1.30.0"; sha256="08prw50z7rdcys8gbc0sn55i8zkydijjpjcqpz5hw7bcdcqkbd37"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
2035  sojourner = derive2 { name="sojourner"; version="1.11.0"; sha256="1s0iqzn65s9g4yymy059z122i9wvgkcb5718snzxhj7mkqjzwhhc"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang scales shiny shinyjs sp truncnorm]; };
2036  spaSim = derive2 { name="spaSim"; version="1.0.2"; sha256="0qp2qr2my4s8yxkzyhsajzvgy3w5zsx70z2kp44sfpgh52krijmx"; depends=[dplyr ggplot2 RANN SpatialExperiment spatstat_geom spatstat_random SummarizedExperiment]; };
2037  sparrow = derive2 { name="sparrow"; version="1.4.0"; sha256="04cshh2ilp5h5ls7zj018imgp1s8lw42i0x0vb171nrjnav7a8pl"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; };
2038  sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.22.0"; sha256="1c8dlfc1jmr3c4s1fnr31444mh92sn21bw8rjcr6andx4cmlryz2"; depends=[MASS MCMCpack optparse tmvtnorm]; };
2039  sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.10.0"; sha256="1rq23ra4nnz9dx0gsg9bh8zcbz6s0pyvjwq30xl6g4hbqz927xb0"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; };
2040  sparsenetgls = derive2 { name="sparsenetgls"; version="1.16.0"; sha256="1d4gpf919rl50cbnk849bgp7wz3iiczzg94v856z2r7d52f4qx86"; depends=[glmnet huge MASS Matrix]; };
2041  spatialDE = derive2 { name="spatialDE"; version="1.4.3"; sha256="12qq27f1l09xjih6415fb4da53df4zy8prgbf7lk5pbhdcw5zy6y"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate S4Vectors scales SpatialExperiment SummarizedExperiment]; };
2042  spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.4.0"; sha256="0swqmynvhr1vdmrr465aja6zln19psai5ymv07kpakb5dxhfpsgp"; depends=[BiocFileCache BiocParallel data_table dplyr dynamicTreeCut edgeR flashClust genefilter ggdendro ggplot2 ggplotify gplots gridExtra grImport htmlwidgets igraph limma Matrix plotly rappdirs reshape2 rsvg S4Vectors scater scran scuttle shiny shinydashboard SingleCellExperiment SummarizedExperiment tibble UpSetR visNetwork WGCNA xml2 yaml]; };
2043  spatzie = derive2 { name="spatzie"; version="1.4.0"; sha256="040s8nmg5hr6rjb7cn2jxjihr8m80v1bdbcynikqxn6vw1cqr3h2"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; };
2044  specL = derive2 { name="specL"; version="1.32.1"; sha256="088fgp8lz6bnrx0ddn61x25vrp672q7cr0ky4x2vh31q4rd0j4zw"; depends=[DBI protViz RSQLite seqinr]; };
2045  spicyR = derive2 { name="spicyR"; version="1.10.7"; sha256="1sjn2x0mbi5s727zi6fpg7kr0awrvbkhs2zcnpqr9kd311nij2za"; depends=[BiocGenerics BiocParallel concaveman data_table dplyr ggforce ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors scam SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tidyr]; };
2046  spikeLI = derive2 { name="spikeLI"; version="2.58.0"; sha256="1wv6xybjf7m9rlylr2dbh5d9kx5vxc0l72y0581fj7l9352qgznh"; depends=[]; };
2047  spiky = derive2 { name="spiky"; version="1.4.0"; sha256="0pdsxidi0pwmwb94iv4l7346vsy9ccwqlr8l62c7ykgnvgn0v1ji"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; };
2048  spkTools = derive2 { name="spkTools"; version="1.54.0"; sha256="14nx30vhimx251w2fixbiis72wi2v8f9rcdbx18rkf6wg0iz2wbj"; depends=[Biobase gtools RColorBrewer]; };
2049  splatter = derive2 { name="splatter"; version="1.22.1"; sha256="1jdwf15zsnzw4bcf76h1bvfv9y9m1ypwbz875322ln129n7pdvh8"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; };
2050  splineTimeR = derive2 { name="splineTimeR"; version="1.26.0"; sha256="125g0sxlkj8f699f0arnq43inx9w4a05bb5jfn6nw9xiqv5pqgah"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; };
2051  splots = derive2 { name="splots"; version="1.64.0"; sha256="0malaw94s55qh7x7x98s472vnr2rgylgfvkrf0113h2l1v92nhmy"; depends=[RColorBrewer]; };
2052  spqn = derive2 { name="spqn"; version="1.10.0"; sha256="024zjcf2wwj2i85zkwdcqxxr88066dsbw2i44mmihk121yhf6qg4"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; };
2053  srnadiff = derive2 { name="srnadiff"; version="1.18.2"; sha256="0myh4pk2jbyr5ih8vycgw0vplgvpyar0xwcgr785xnpfjp8vj078"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
2054  ssPATHS = derive2 { name="ssPATHS"; version="1.12.0"; sha256="08wcv1jni9vhqnzvn41nsq9254px3qdf2wv60zkyrw8wpwkpyfy8"; depends=[dml MESS ROCR SummarizedExperiment]; };
2055  sscore = derive2 { name="sscore"; version="1.70.0"; sha256="07rzrac3v1lz4qas0zl6b9mjh5kvpd2wjgczc92dsl9x7ac4nn9i"; depends=[affy affyio]; };
2056  sscu = derive2 { name="sscu"; version="2.28.0"; sha256="0c1g5220bk5rrhngbjdix6bj03vd9vx62z3hmjkx3dq88p1wfkq6"; depends=[BiocGenerics Biostrings seqinr]; };
2057  ssize = derive2 { name="ssize"; version="1.72.0"; sha256="1cgh2yniw4mlbmfcmawpv9kf8fkjw6w8b58vkndwcpf6pz7bznbk"; depends=[gdata xtable]; };
2058  ssrch = derive2 { name="ssrch"; version="1.14.0"; sha256="0w4b7xg0qxsn7sn9skqa1qvjrmicr8baxlasaza1gjxlqngvj95c"; depends=[DT shiny]; };
2059  ssviz = derive2 { name="ssviz"; version="1.32.0"; sha256="1zplxlbd2f5h86dzgfw55q09jpd27fkaslswj6lrvavw9a89pmc8"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; };
2060  stJoincount = derive2 { name="stJoincount"; version="1.0.0"; sha256="0lphq2dff2dpbjixwf83dazb2fkncfn8jbaqsnhbskd8ansmydid"; depends=[dplyr ggplot2 magrittr pheatmap raster Seurat sp SpatialExperiment spdep SummarizedExperiment]; };
2061  staRank = derive2 { name="staRank"; version="1.40.0"; sha256="1f92yc538dvyqyxswrqwf1c0r8kaj45wpcpikrs9vr1g0s072lv5"; depends=[cellHTS2]; };
2062  stageR = derive2 { name="stageR"; version="1.20.0"; sha256="1layvv9akzijw2br9jzw6cwxn2rimha4m48fm8wn465n1nqcns0m"; depends=[SummarizedExperiment]; };
2063  standR = derive2 { name="standR"; version="1.2.2"; sha256="0c1zvivp9v2cky60sjv3zp0myxjpbfzsb53m6jbjpjyhlh74g4a1"; depends=[Biobase BiocGenerics dplyr edgeR ggalluvial ggplot2 limma mclustcomp patchwork readr rlang ruv RUVSeq S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tibble tidyr]; };
2064  statTarget = derive2 { name="statTarget"; version="1.28.0"; sha256="1cd5rbwrf9ybh08zfb7wagr5p9172xrblf5k8kh9hd7v0qd8ax1j"; depends=[impute pdist pls plyr randomForest ROC rrcov]; };
2065  stepNorm = derive2 { name="stepNorm"; version="1.70.0"; sha256="0b26habd4gs0iy8vrq6mfink8yy93sn5hgq5jlx6c65rba8cs1nq"; depends=[marray MASS]; };
2066  strandCheckR = derive2 { name="strandCheckR"; version="1.16.0"; sha256="17ibvcff0qdjrwvbhjzphxc8xyk8hv0rn5kyfjnwzkqsqvippx9g"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; };
2067  struct = derive2 { name="struct"; version="1.10.0"; sha256="0piz8kgxv1l78k5abvmzb42p0rc29j1r3iyj4izh2rpn0k8lpwpf"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; };
2068  structToolbox = derive2 { name="structToolbox"; version="1.10.1"; sha256="152i2iwp331bqb3qy5yxbksw6q35kvsljs1dgvbjjm4b8pqvrk2i"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; };
2069  subSeq = derive2 { name="subSeq"; version="1.28.0"; sha256="0q5snp5k3fdzp3bk125ix9ksnn5w81hp9bq7hx7vr5pkcr27y2jr"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; };
2070  supersigs = derive2 { name="supersigs"; version="1.6.0"; sha256="1dy4l467xj77bragcshwyildnlybx3g4gf1sds005yf6766kmjr9"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; };
2071  supraHex = derive2 { name="supraHex"; version="1.36.0"; sha256="060z35h4d48xq3pv3i00pa8m5vjg15qama8s2pd5vwgnyi0pv2l1"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; };
2072  surfaltr = derive2 { name="surfaltr"; version="1.4.0"; sha256="0lbdcx88j3icrfg5py3iarmjrb3a6ybzkdvq25q51qzzlwixzll7"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; };
2073  survcomp = derive2 { name="survcomp"; version="1.48.0"; sha256="0a6sqzgvxfgjr6yrpv1vaza6yni6n1gminr2g0912rhkaz1c7z6z"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; };
2074  survtype = derive2 { name="survtype"; version="1.14.0"; sha256="0z3vgiryafqsqwxk5gzpkp7svkhxyqvl2sbh5vvfpdb5jil93dgg"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; };
2075  sva = derive2 { name="sva"; version="3.46.0"; sha256="0c1b7w4rvyy8i0jygj8g9xgf46rmgx8bpdlp2x4fdjr9xsrsl23g"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; };
2076  svaNUMT = derive2 { name="svaNUMT"; version="1.4.0"; sha256="0vhl1d8b4ys1nd44pf5z6kr4gl5cww9ml8pnf7fphzz6d0r8hg89"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; };
2077  svaRetro = derive2 { name="svaRetro"; version="1.4.0"; sha256="04z604mkpzmbflf34338011dmbwzhws294jzc06akxg98220airv"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; };
2078  swfdr = derive2 { name="swfdr"; version="1.24.0"; sha256="0svvmssp4jlhcs8agihpc4hlar83d5czrlp7l5xlzf4cagzx2nv9"; depends=[]; };
2079  switchBox = derive2 { name="switchBox"; version="1.34.0"; sha256="0mi9wwlv8rlcf4lsmingnb7d195ji19s264kfdsp5gpc7vg9arli"; depends=[gplots pROC]; };
2080  switchde = derive2 { name="switchde"; version="1.24.0"; sha256="0j1a1a1zg0f9xirbva42w48k06b9kbk340jygcj3gp18ii207wql"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; };
2081  synapsis = derive2 { name="synapsis"; version="1.4.0"; sha256="127yx1a56r0fh8n9ir2zlhxs2fj47pfdxn8dssdmns0d77rhnnvc"; depends=[EBImage]; };
2082  synapter = derive2 { name="synapter"; version="2.22.0"; sha256="1zl8nqyaqrp424k0a06s4h7ffaxixhf1i39zx3kl3bhvayqmqviw"; depends=[Biobase Biostrings cleaver lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; };
2083  synergyfinder = derive2 { name="synergyfinder"; version="3.6.3"; sha256="14zmapbjpjhq3sffwab84j8qqc55mawh9a8mjm78hwi5hsxi9kp5"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; };
2084  synlet = derive2 { name="synlet"; version="1.28.0"; sha256="12hmzwfd31nhnxcjxcpyw5q5rsgky99q446qk52dy7vqy5achld3"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; };
2085  syntenet = derive2 { name="syntenet"; version="1.0.4"; sha256="0qy7xkb577zyj4f8syljyrgfwkig0970hm7ngkhbwbm2n25mdgvl"; depends=[Biostrings GenomicRanges ggnetwork ggplot2 igraph intergraph networkD3 pheatmap RColorBrewer Rcpp rlang rtracklayer testthat]; };
2086  systemPipeR = derive2 { name="systemPipeR"; version="2.4.0"; sha256="0lwc4d4k6qmnwsh8fpp5rmiaxhzwl2f0dhzs23ska5xy04466r49"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; };
2087  systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.8.1"; sha256="193c7si0jkkfz2p3sd8am4mga721mkxxf2wyv6b7yqarhvi5cdc2"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; };
2088  systemPipeTools = derive2 { name="systemPipeTools"; version="1.6.0"; sha256="0qj8c652ms4ja4bjp57gx75xr4m3haj9bh3q337cqqr0wk02gn80"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; };
2089  tLOH = derive2 { name="tLOH"; version="1.6.0"; sha256="1clpyiz04scsknvq5y1kk8ipx1a9ljrb1127wrsjvrgj6q4fjilj"; depends=[bestNormalize data_table depmixS4 dplyr GenomicRanges ggplot2 MatrixGenerics naniar purrr scales stringr VariantAnnotation]; };
2090  tRNA = derive2 { name="tRNA"; version="1.16.1"; sha256="16z9spk96lzabrc6cck4zyradpaw81z4c2lfm2c2i86si52lk946"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; };
2091  tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.16.0"; sha256="1zmqdh9va0sxzf9jfngrhh5kdbkshz0n5x7fqf23anyhwwzr8z1p"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; };
2092  tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.18.0"; sha256="1hnd953pbhzx6b3hqn8mx5d6bv43pc6dw3n7a9z393rkydn21wdg"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; };
2093  tRanslatome = derive2 { name="tRanslatome"; version="1.36.0"; sha256="1w2fii837md64pg4d79shxmk658vi0dkqggl6r6b11f6m2ja946v"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; };
2094  tanggle = derive2 { name="tanggle"; version="1.4.0"; sha256="11mhavfy1fscndz5yiihxb9davmwvxslwj6ph7251787h1sr337g"; depends=[ape ggplot2 ggtree phangorn]; };
2095  target = derive2 { name="target"; version="1.12.0"; sha256="135hphjpp8326gbsl2j115082pnazpr6n5rj9ppync6bbl1iisq1"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; };
2096  tenXplore = derive2 { name="tenXplore"; version="1.20.0"; sha256="0di434q3xch7hb93cnaa7zac4s8jx0k7wbvf6rl0j0rk35zdp3lx"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; };
2097  ternarynet = derive2 { name="ternarynet"; version="1.42.0"; sha256="01z262509vka2sfhzccwlmgi5frf56x07gbsan762hgvrcscg8jb"; depends=[BiocParallel igraph]; };
2098  terraTCGAdata = derive2 { name="terraTCGAdata"; version="1.2.0"; sha256="1yfvqdsgd3apan43cbjin95mwnbym1m0f1c8x212k277cc3rm22r"; depends=[AnVIL BiocFileCache dplyr GenomicRanges MultiAssayExperiment RaggedExperiment readr S4Vectors TCGAutils tidyr]; };
2099  tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.8.0"; sha256="0kkxd64rlksw7l0hw53ckc9mhsvsb0yj8w078bh4rd16iqk3jnnc"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect ttservice]; };
2100  tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.8.1"; sha256="1sry782zf2sisjwlhgdh1vfr0ljbw2rrwwb907jxmafg6jm96rxq"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect vctrs]; };
2101  tidybulk = derive2 { name="tidybulk"; version="1.10.1"; sha256="100xnjz73wl48a93gv4361pllyb96nbhg5q8spgq131wp0i0zjzz"; depends=[crayon dplyr GenomicRanges lifecycle magrittr preprocessCore purrr readr rlang S4Vectors scales stringi stringr SummarizedExperiment tibble tidyr tidyselect]; };
2102  tigre = derive2 { name="tigre"; version="1.52.0"; sha256="1cj4yqdad1xs8k682qx92b03nbyx51qdqsf7y90bll3z51xhwvdq"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; };
2103  tilingArray = derive2 { name="tilingArray"; version="1.76.0"; sha256="19bkgblpkcp3w3sdyn82c37gkz1sv3r4d546zpbnh36q2pi3l4zd"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; };
2104  timeOmics = derive2 { name="timeOmics"; version="1.10.0"; sha256="1szhdd29gfa7ah7yf683d69s2w0w6r8nh3kc7fii3vnyqspspb19"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr purrr stringr tibble tidyr]; };
2105  timecourse = derive2 { name="timecourse"; version="1.70.0"; sha256="0lq5haikg76vbrf3jmyxx6s7kglwaabdbwza2sd6zg84lbpyw3nv"; depends=[Biobase limma marray MASS]; };
2106  timescape = derive2 { name="timescape"; version="1.22.0"; sha256="0i0v10gaj47dw53am4z1rdhzbdfh8nybgdb204h928jfnc1ag20f"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; };
2107  tkWidgets = derive2 { name="tkWidgets"; version="1.76.0"; sha256="09zhzm42h814srqzkzdswp4y450j24166r87szlimzcdjm38xnkj"; depends=[DynDoc widgetTools]; };
2108  tomoda = derive2 { name="tomoda"; version="1.8.0"; sha256="1sfn1l0bys7bmfglhn73jw7qzniabgv3ffbns4ci17d29zzf0akk"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; };
2109  tomoseqr = derive2 { name="tomoseqr"; version="1.2.0"; sha256="1x583lzmf2dslvm2a103i7k5gkd6spavnrrxxp6v35dmj1g531fg"; depends=[animation BiocFileCache dplyr ggplot2 plotly purrr readr shiny stringr tibble]; };
2110  topGO = derive2 { name="topGO"; version="2.50.0"; sha256="1ripdn7mcabh96bm4p807dbwj7jv05a54kss4snhz84svqq383m4"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; };
2111  topconfects = derive2 { name="topconfects"; version="1.14.0"; sha256="00bpbkwafvcak847grg2ypmnagwr2imdg4vmsm3f5s3qd97ra69f"; depends=[assertthat ggplot2]; };
2112  topdownr = derive2 { name="topdownr"; version="1.20.0"; sha256="1m5213k4drmicswjsphzz7m9d93275vlwy1fzp2iiaqjr7w12b6a"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; };
2113  trackViewer = derive2 { name="trackViewer"; version="1.34.0"; sha256="1gd95f947lw4yp8l9azlfg5hylg6bxfc10dxw5cgpsacny9lnbkr"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rcpp Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales]; };
2114  tracktables = derive2 { name="tracktables"; version="1.32.0"; sha256="1cp9n1sa028xh6265gn83xjy6bqc05gnghdr6lnwmb75pv7sliyg"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; };
2115  tradeSeq = derive2 { name="tradeSeq"; version="1.12.0"; sha256="0wkbjhwqk094nd5h6sl2nw5jp5vmkh9why635l8qkqmxa2jm3gh0"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; };
2116  transcriptR = derive2 { name="transcriptR"; version="1.26.0"; sha256="03v8xn777vyma82ma5dzk07i1g7406cvsybdz4bf6hj8bgx5ynw7"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; };
2117  transcriptogramer = derive2 { name="transcriptogramer"; version="1.20.0"; sha256="0m9kqshmvfyj30ssxp9qx15780zpmxsq7vgidmz66pqv36cn06vh"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; };
2118  transformGamPoi = derive2 { name="transformGamPoi"; version="1.4.0"; sha256="1ihk1bml8kjzhfx52zj8xxbrqb12p2jphymxi7rh0df038khj4sr"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics Rcpp SummarizedExperiment]; };
2119  transite = derive2 { name="transite"; version="1.16.0"; sha256="0kgh4npxfkbmd525pmpf08247wrdary863qhvmkwc3z7i91973sj"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; };
2120  transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.8.0"; sha256="0r5cc3r2x1gjr5f6wkwk8jw812f6asfk6r5qr9wl5iad4h1i2d20"; depends=[dplyr KEGGREST purrr RCy3 tibble]; };
2121  traseR = derive2 { name="traseR"; version="1.28.0"; sha256="0pya0d9mng8lizc0x08pai6bjvaxj740h903p4y9b1fshl27r6mk"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; };
2122  traviz = derive2 { name="traviz"; version="1.4.0"; sha256="17nazzn7h5hmmrb6dfxybnfj4yhc0qikn32q7ari7v5bg6fz6bky"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; };
2123  treeio = derive2 { name="treeio"; version="1.22.0"; sha256="1xl8497ya79hlp3v3fihnz9grwni29v6860i273lrpcljv8868l9"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; };
2124  treekoR = derive2 { name="treekoR"; version="1.6.1"; sha256="12h3qwildrqksjj654wbrcx69m6wkrwr1rx05xwzbd6vg0ljc3d3"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; };
2125  trena = derive2 { name="trena"; version="1.20.0"; sha256="0c2m825p2fggr8y6zmqa2nlhvh28k6miga6812900fcc1r82fv2n"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 WGCNA xgboost]; };
2126  tricycle = derive2 { name="tricycle"; version="1.6.0"; sha256="0b5agqhywg23zxf0f9s1vfbzs7s7ijf9c716s7hwjprxfdz5znvw"; depends=[AnnotationDbi circular dplyr GenomicRanges ggnewscale ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; };
2127  trigger = derive2 { name="trigger"; version="1.44.0"; sha256="0h9zv5ak3arp436ivxqz7xmfanqk6m8k7xs0y5c6586fjzrhz7y5"; depends=[corpcor qtl qvalue sva]; };
2128  trio = derive2 { name="trio"; version="3.36.0"; sha256="1gccqcyrq5di7763q4mpl28fj64bpjm5s1vwjy5cwkhhkp90kr23"; depends=[LogicReg siggenes survival]; };
2129  triplex = derive2 { name="triplex"; version="1.38.0"; sha256="1zd0r8xn8ri357x95cbd67vcsvjicq8fzqj0gp18v70vq22k331i"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; };
2130  tripr = derive2 { name="tripr"; version="1.4.0"; sha256="0kwmi1s9v0rwpf9qgdah8s5c93f17qcs8s5hhhd2z2rh9lm7sgx3"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr pryr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; };
2131  tscR = derive2 { name="tscR"; version="1.10.0"; sha256="1i372yw3rf1s1zr5dn7p2w9p0qgmghl1b1is8wq20g8zz3hf0aka"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; };
2132  ttgsea = derive2 { name="ttgsea"; version="1.6.3"; sha256="1c4ngsrczca10fnlrnr8n1h55j6g1xj3laklr8aahhgdq5isajr7"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; };
2133  tweeDEseq = derive2 { name="tweeDEseq"; version="1.44.0"; sha256="09rdcax78vbcrl7q7i457n18jk298lxagxm0v89x3s6izvqr025p"; depends=[cqn edgeR limma MASS]; };
2134  twilight = derive2 { name="twilight"; version="1.74.0"; sha256="1lia4q637ngh47zlr5g18isp9acrb4d9g1fzck2akldqa0pnn66r"; depends=[Biobase]; };
2135  twoddpcr = derive2 { name="twoddpcr"; version="1.22.0"; sha256="01bfphc5hi8mk5j72f95pdqbi28bj4nfdvr0lzp9xs38qfnb80h7"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; };
2136  txcutr = derive2 { name="txcutr"; version="1.4.0"; sha256="05skv6ks1gq2wbx9gm5c3gk5k77vy248brhcay43ni900xwn10zi"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; };
2137  tximeta = derive2 { name="tximeta"; version="1.16.1"; sha256="15qf8s9akl5qp5wklph5i61d96d9ifr5ijl796v1vafwrj4f3wpa"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; };
2138  tximport = derive2 { name="tximport"; version="1.26.1"; sha256="1r67q4nb2bx9nqycyr2gnfmh4gizl0c7l510vmlcdvplv3yi73yn"; depends=[]; };
2139  uSORT = derive2 { name="uSORT"; version="1.24.0"; sha256="1fhhl00qdj7ihvb3ia2nd215m1ylbaszpyq1w7bmgv89v5ghhsgf"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; };
2140  uncoverappLib = derive2 { name="uncoverappLib"; version="1.8.1"; sha256="196xw6m69ld6nnbgqyyr7vd9qgqlczybgs7phvm7g36q4rywsnkm"; depends=[BiocFileCache condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools S4Vectors shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; };
2141  unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.34.0"; sha256="0zkqr1s8gagwsh33kzp0n2n7ff5jhfn6a60gvab5spk7vr76j442"; depends=[BiocGenerics HTqPCR]; };
2142  universalmotif = derive2 { name="universalmotif"; version="1.16.0"; sha256="1vfg703wxbgxw2cwqqz3kfyqj4za5n3skxxzi8c31azamg4hxs18"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; };
2143  updateObject = derive2 { name="updateObject"; version="1.2.0"; sha256="13rq1hv0rg8cj3z8d2b9mfih5sybicb4razv8vaic1i7c7sbypwf"; depends=[BiocGenerics digest S4Vectors]; };
2144  variancePartition = derive2 { name="variancePartition"; version="1.28.9"; sha256="1al7wkbv26gldba61gq80c3mznsxwr7z5njv2s0lb7hnll9bscar"; depends=[aod Biobase BiocParallel doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix pbkrtest progress Rdpack remaCor reshape2 RhpcBLASctl rlang scales]; };
2145  vbmp = derive2 { name="vbmp"; version="1.66.0"; sha256="1gfvk1g9q73p9z91zasblya1w218yhzawp6dgyf0lnldx36kpvc9"; depends=[]; };
2146  velociraptor = derive2 { name="velociraptor"; version="1.8.0"; sha256="07nwx9cahia4a6g15xhccdlwxnhvwq46dy2hqcqqzydgpsapa6wv"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; };
2147  veloviz = derive2 { name="veloviz"; version="1.4.0"; sha256="01f2d28h0gnh38g50yphmg3aqy1ya2ysj1xabs2a6y3wnqzrahzk"; depends=[igraph Matrix mgcv Rcpp RSpectra]; };
2148  vidger = derive2 { name="vidger"; version="1.18.0"; sha256="086q79hf689hslsrxzzif9f7cwkm80djfl0vn75cd0xbhsqpsayf"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; };
2149  viper = derive2 { name="viper"; version="1.32.0"; sha256="11i2q9nakh534nx2l736id7k1yqhk7jpg32sbfl4vrnh398q86h6"; depends=[Biobase e1071 KernSmooth mixtools]; };
2150  vissE = derive2 { name="vissE"; version="1.6.0"; sha256="1wfdrqvsqxc3jllmqbrrcwy7737kifxzmgrlr220zfzhc5hf4888"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; };
2151  vsclust = derive2 { name="vsclust"; version="1.0.0"; sha256="05lzdrjira4ck0b3jjfs3n7fhd8p65pvy4p96241j0lng1q9bwgm"; depends=[limma matrixStats MultiAssayExperiment qvalue Rcpp shiny]; };
2152  vsn = derive2 { name="vsn"; version="3.66.0"; sha256="1k77rg5jf646m1pn59qhlsbb9fzhlpnrj4dzxagknawcbpnnjl0z"; depends=[affy Biobase ggplot2 lattice limma]; };
2153  vtpnet = derive2 { name="vtpnet"; version="0.38.0"; sha256="17b744wiknlgwq3c404ijnd3nqp1hran2v315gis0y20kb9xbjm3"; depends=[doParallel foreach GenomicRanges graph gwascat]; };
2154  vulcan = derive2 { name="vulcan"; version="1.20.0"; sha256="01cz2kv9ayb0819kqc65qhjs9ny3549a8af5c1lwrqxss8bg9s6b"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; };
2155  waddR = derive2 { name="waddR"; version="1.12.0"; sha256="00yjkphzj7yfz57d6i64w75x4mc8i6sjvb0v0jjmkg2vpbmzbfnk"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; };
2156  wateRmelon = derive2 { name="wateRmelon"; version="2.4.0"; sha256="0m8mra0jb6sgm13dagqn1pj81dha4dyj65xc6r2sh0yc3pyjb20h"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; };
2157  wavClusteR = derive2 { name="wavClusteR"; version="2.32.0"; sha256="1z7y3wnrqr2xqrvs2xwmv419aqlizq0az17dpxmj1hg9knyls1bx"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; };
2158  weaver = derive2 { name="weaver"; version="1.64.0"; sha256="1ykdr01sichl615m6m5dbaarsz4b3fg59fd9cg3gicp01nvba6mz"; depends=[codetools digest]; };
2159  webbioc = derive2 { name="webbioc"; version="1.70.0"; sha256="1mgag0gjavpld4xxlpfafq6fhzjafxgqyf677xrm6ff26z6z1ja2"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; };
2160  weitrix = derive2 { name="weitrix"; version="1.10.0"; sha256="1mh2847rxs35n1dmzpx0yjaszhqb67ff2qdzcn0k5ki2acm0f4l5"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; };
2161  widgetTools = derive2 { name="widgetTools"; version="1.76.0"; sha256="1p93dzf7w9z1ria0f8n32aymam9abxyg50ngnh7s6a8n24mvvjy5"; depends=[]; };
2162  wiggleplotr = derive2 { name="wiggleplotr"; version="1.22.0"; sha256="1yp9siy4249wkwd0yy5lkwp79xir53f8mihiv4dkir8fscgampl3"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; };
2163  wpm = derive2 { name="wpm"; version="1.8.0"; sha256="05zpj0i4741xn1g0yhkq3mg9zjppfryrfc47pxnys9bjfij0az52"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; };
2164  wppi = derive2 { name="wppi"; version="1.6.0"; sha256="0kc3nkim8fhajhai5bwzwirsg74zbdib3dd7cfr75ddwd8myc913"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; };
2165  xcms = derive2 { name="xcms"; version="3.20.0"; sha256="1gj0nd90c6ykwn1n7xndzrgfv5dzy0y2lh3bf8120nacccgxl2qx"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; };
2166  xcore = derive2 { name="xcore"; version="1.2.0"; sha256="195gcnpyqn2slvjnj0cvsc79csj505ky8g3pghhjijdjybpbqg4z"; depends=[DelayedArray edgeR foreach GenomicRanges glmnet IRanges iterators magrittr Matrix MultiAssayExperiment S4Vectors]; };
2167  xmapbridge = derive2 { name="xmapbridge"; version="1.56.0"; sha256="0wxr3db2daj4xlr9df6iqwm00m71kln7rhqnq2ckdsricblanhs7"; depends=[]; };
2168  yamss = derive2 { name="yamss"; version="1.24.0"; sha256="0bh06mncjrkihz2j29hasbipfl50x7393wshdcnlxrs5rrq73r0n"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; };
2169  yarn = derive2 { name="yarn"; version="1.24.0"; sha256="0sqbll7ja0qr8r28dqmydmkvg4ijfm7z8hbrsrz3xxdan70bmd2r"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; };
2170  zFPKM = derive2 { name="zFPKM"; version="1.20.0"; sha256="1wsmv4fld4s7l0qh84ghizq8k388ybdz9hzzis2gn1nn57q1c7wi"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; };
2171  zellkonverter = derive2 { name="zellkonverter"; version="1.8.0"; sha256="0b14v6lyhfapmfj8j729k5cmgxc4df6wsk2rds0q4y6z4hiwgmxy"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; };
2172  zenith = derive2 { name="zenith"; version="1.0.2"; sha256="1r4n8v8rk8imrzz2zv1falca5xhqm5m4kljg8sa28mhcvxfrk4mn"; depends=[EnrichmentBrowser ggplot2 GSEABase limma msigdbr progress Rdpack reshape2 Rfast tidyr variancePartition]; };
2173  zinbwave = derive2 { name="zinbwave"; version="1.20.0"; sha256="1356ms5y6fg7ndn8hvs6zsyr0jg6ah7a56qxd2x4xgyjj3xcakbv"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; };
2174  zlibbioc = derive2 { name="zlibbioc"; version="1.44.0"; sha256="0c75mf0iw6bgwrn3zxpz1dz03aw7p6a1mfhssk6i1mp24avic9lb"; depends=[]; };
2175  ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.24.0"; sha256="1sp3f72rzlr822dxx42bswynrwwfx6f520hdhfdikqp13p2y4044"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; broken = true; };
2176  ALPS = derive2 { name="ALPS"; version="1.5.0"; sha256="1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p"; depends=[assertthat BiocParallel ChIPseeker corrplot data_table dplyr genefilter GenomicRanges GGally gghalves ggplot2 ggseqlogo Gviz magrittr org_Hs_eg_db plyr reshape2 rtracklayer stringr tibble tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; };
2177  Autotuner = derive2 { name="Autotuner"; version="1.7.0"; sha256="0k07gs6bnxs0894iqi1lhk96mifjcdf68bv4q9fjv50nzqpzqd8l"; depends=[assertthat Biobase cluster entropy MSnbase mzR RColorBrewer scales]; broken = true; };
2178  BioPlex = derive2 { name="BioPlex"; version="1.2.3"; sha256="0cn0x6ij2a3xy61bq0qy5amp0ipj4r4shh7g0vlwbkrclj9w347r"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; broken = true; };
2179  CAnD = derive2 { name="CAnD"; version="1.27.0"; sha256="14x0m5iv7dm1iii5zsny9wnf4j5ddh0kij2jm658r3i4wnc99mkb"; depends=[ggplot2 reshape]; broken = true; };
2180  CompGO = derive2 { name="CompGO"; version="1.28.0"; sha256="16nlrk9wbxj51y8s7s58mdhpi70ghfacxi283406gwya3cm79f0n"; depends=[GenomicFeatures ggplot2 pathview pcaMethods reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; broken = true; };
2181  CountClust = derive2 { name="CountClust"; version="1.21.0"; sha256="17px9jkpjwz0j2f5h8xv52wh24ilqvlb6dvczjc36lb7mq4cw3sq"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; broken = true; };
2182  CytoTree = derive2 { name="CytoTree"; version="1.6.0"; sha256="1dsdhwjkd3ngnw50fs6vz048afk47r95vhi0wqj8sip11nhndkd8"; depends=[Biobase BiocNeighbors cluster destiny flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; broken = true; };
2183  EasyqpcR = derive2 { name="EasyqpcR"; version="1.31.0"; sha256="0lb2px789668fr1gxghycy7lbdkpwmippv6xmmwws6rbanvfd6v4"; depends=[matrixStats plotrix plyr]; broken = true; };
2184  EnMCB = derive2 { name="EnMCB"; version="1.8.2"; sha256="1kna7s4rz5mlaj7vwc0mrzaziadvai7zq8ajiy4jya8xw78llyw4"; depends=[BiocFileCache boot e1071 ggplot2 glmnet igraph Matrix mboost rms survival survivalROC survivalsvm]; broken = true; };
2185  FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; broken = true; };
2186  FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.23.0"; sha256="04lk2cahf6zqnhpzh0zwas4vmvaz4kcik9ri65bs9d9ximzjam91"; depends=[jsonlite RCurl XML]; broken = true; };
2187  GAPGOM = derive2 { name="GAPGOM"; version="1.11.0"; sha256="0sl97w5zx4zdrdbcwayqyvgxspaxpbils3mpsrim0zlspjrjcy6z"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; broken = true; };
2188  GCSConnection = derive2 { name="GCSConnection"; version="1.7.0"; sha256="1psmw3825whyzvbzqpqksgcl09b6kfyb8k5vny6ljkjbac1jzvnf"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; broken = true; };
2189  GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.6.0"; sha256="0qk8xyg06f71y4r1q1zpcj89irh9i6cd9z6nqlx635x8if84sh6d"; depends=[]; broken = true; };
2190  GeneAnswers = derive2 { name="GeneAnswers"; version="2.36.0"; sha256="1f8q3hi913khyy1cc3yp2635gaik47alsqmhi0mi24cy340faplz"; depends=[annotate Biobase downloader Heatplus igraph KEGGREST MASS RBGL RColorBrewer RCurl RSQLite XML]; broken = true; };
2191  GenoGAM = derive2 { name="GenoGAM"; version="2.11.0"; sha256="058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; broken = true; };
2192  IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.31.0"; sha256="1w7zxsvmcrz8cj8g8xa1vqbzfycdhgsclhcjmkqjw1hwz6fp3xgn"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust RColorBrewer Rcpp relimp tkrplot xlsx]; broken = true; };
2193  MACPET = derive2 { name="MACPET"; version="1.15.1"; sha256="0742i3fxg2793lhgpxb4whh6mwvzd4bn86ykd0rv8sgilxyq5zsl"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; broken = true; };
2194  MSEADbi = derive2 { name="MSEADbi"; version="1.2.0"; sha256="1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf"; depends=[AnnotationDbi Biobase DBI RSQLite]; broken = true; };
2195  MSGFgui = derive2 { name="MSGFgui"; version="1.28.0"; sha256="0dkj2nbv5xv4v4bbmf91av0ryh9pxdfp7fmbqlma4xyf1r7zmx4c"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; broken = true; };
2196  MSGFplus = derive2 { name="MSGFplus"; version="1.28.0"; sha256="1k0qm049gk4gjhd88zhxxrpc944r7ndq8dys08ai2kbaqignvb7y"; depends=[mzID ProtGenerics]; broken = true; };
2197  MSstatsTMTPTM = derive2 { name="MSstatsTMTPTM"; version="1.1.2"; sha256="16qnddwhwhjjfr5akdrmp93gkxq2r41s82hb1blbz47lwbj5kaj5"; depends=[dplyr ggplot2 gridExtra MSstatsTMT Rcpp reshape2 stringr]; broken = true; };
2198  PSICQUIC = derive2 { name="PSICQUIC"; version="1.34.0"; sha256="0gkkxxbc2a7cin92qwn1masqfigyz9s4fhyy2daa17r3ckk4ccgx"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; broken = true; };
2199  PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.22.0"; sha256="0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d"; depends=[igraph jsonlite pcaMethods shiny]; broken = true; };
2200  PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.11.0"; sha256="1miw8rj1zn1xv97dkgs66k9g21i6gp3j2m1l1akysskczgam3i2c"; depends=[BiocParallel biomaRt brglm data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; broken = true; };
2201  ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.24.0"; sha256="0qs5hbx7pww7qxxaimp2xqvs3lwcd41ndls0xcvvlk7pnp4i4sk8"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; broken = true; };
2202  PubScore = derive2 { name="PubScore"; version="1.8.0"; sha256="18bmzvv6mxrdlh297i29q24vi5rc4x2mjaryi5asiki186x0hy8d"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; broken = true; };
2203  RGalaxy = derive2 { name="RGalaxy"; version="1.38.0"; sha256="0vfsn8cj5c8n58ra1qz85gwmm1747lm3xdz17m20f73g8q78nymd"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; broken = true; };
2204  Rgin = derive2 { name="Rgin"; version="1.15.0"; sha256="1x5zj2d5rvsr2xh0ifpnrys9v91dal1xxhv5mmk16rs8wzwqpqba"; depends=[RcppEigen]; broken = true; };
2205  RmiR = derive2 { name="RmiR"; version="1.49.0"; sha256="16nwh4a97qvyicm4f102xs52lx8cld0b80fykgil86kkd6v8zlja"; depends=[DBI RmiR_Hs_miRNA]; broken = true; };
2206  Rnits = derive2 { name="Rnits"; version="1.29.0"; sha256="0m6afic9p7synmngkn7zyf53saqnrmgydjbk41k0w814i46dcd6h"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; broken = true; };
2207  RpsiXML = derive2 { name="RpsiXML"; version="2.38.0"; sha256="0x4nph4xss4piq4fgijjjj33yrqqfdbsgn9wvqy17nglvz5gi7bi"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; broken = true; };
2208  SLGI = derive2 { name="SLGI"; version="1.54.0"; sha256="03jwdq4k44rys3f773c6l985a6v1bacbdghw97p0qpwspmzra8rs"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice]; broken = true; };
2209  ScISI = derive2 { name="ScISI"; version="1.65.0"; sha256="0q3bbfsink5d8xslhp129qwvlq5mdzw8zkv9msd0q8qmkclsbiz1"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; broken = true; };
2210  Sushi = derive2 { name="Sushi"; version="1.34.0"; sha256="0adswrbzd93rhy3q56ypwkrk6155vd4zxapvznswyjlxp8ha813q"; depends=[biomaRt zoo]; broken = true; };
2211  SwimR = derive2 { name="SwimR"; version="1.29.0"; sha256="0n58x3i4k3icvhg8z60zlhpszv8bb9pain07nl9rszyvmpi71vg2"; depends=[gplots R2HTML signal]; broken = true; };
2212  TSRchitect = derive2 { name="TSRchitect"; version="1.20.0"; sha256="1v9zz8ny9rwkyz98cv49l9ilh68h8mvm2x44n8i8rvjayc50zi9i"; depends=[AnnotationHub BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges readxl Rsamtools rtracklayer S4Vectors SummarizedExperiment]; broken = true; };
2213  TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.13.0"; sha256="0bdpxxr739qdg92qabfx122k9f43vw2hyxp4yxqlbp37vzgcdf2c"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; broken = true; };
2214  XCIR = derive2 { name="XCIR"; version="1.7.0"; sha256="0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; broken = true; };
2215  affyPara = derive2 { name="affyPara"; version="1.51.0"; sha256="01165f84snc3ksk0ghw631i2l5jklp4n826jwy5926wvxy3zlwz0"; depends=[affy affyio aplpack snow vsn]; broken = true; };
2216  alsace = derive2 { name="alsace"; version="1.30.0"; sha256="17adr64g3l2syj0shi57nrvx105w7wrkiqm0qp3hwlk1ivmnadzn"; depends=[ALS ptw]; broken = true; };
2217  caOmicsV = derive2 { name="caOmicsV"; version="1.25.0"; sha256="10i4imjihmssdwfys21fsqng8zfp7sxzkc58m8qmnh6s5sccb3sz"; depends=[bc3net igraph]; broken = true; };
2218  clonotypeR = derive2 { name="clonotypeR"; version="1.34.0"; sha256="15nnj6c23bcnln1xsmxs7f13m13lvn6did7lvp7ij8gcb0vg2g6q"; depends=[]; broken = true; };
2219  ctgGEM = derive2 { name="ctgGEM"; version="1.7.0"; sha256="0hmapz96r024r3bws1wf0spd0i81viyma859y9nn93jrwxscrcdb"; depends=[Biobase BiocGenerics igraph Matrix monocle sincell SummarizedExperiment TSCAN]; broken = true; };
2220  diffloop = derive2 { name="diffloop"; version="1.24.0"; sha256="0v0jg9y08xzw775x2lm82ig1ag4wjf4z2l6a66zmk6qbn59dwj1g"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; broken = true; };
2221  dualKS = derive2 { name="dualKS"; version="1.53.0"; sha256="16cfcylmmcj8x2808529lbpm7qbbrxygic0jkaglhqcdxgrqw3rw"; depends=[affy Biobase]; broken = true; };
2222  flowUtils = derive2 { name="flowUtils"; version="1.59.0"; sha256="11x362dqb9mjlsbq6g1qkb8hhnkvm22z5s3wkgmpyy9kyifjkm26"; depends=[Biobase corpcor flowCore graph RUnit XML]; broken = true; };
2223  gaia = derive2 { name="gaia"; version="2.39.0"; sha256="023mw2dy6dni7h7a1ild1y6l741kp9bmjzzfyi70jipji1jig4pa"; depends=[]; broken = true; };
2224  genphen = derive2 { name="genphen"; version="1.24.0"; sha256="1m60qagcxviix4zjzfhvrwchbjq2clss6mivb8q07bcq369yw1b8"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; broken = true; };
2225  gpart = derive2 { name="gpart"; version="1.13.0"; sha256="1518wjkaw22ckgpwl6si83bhijvib0r0kgs9s4das41f0ygi92sd"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; };
2226  gprege = derive2 { name="gprege"; version="1.39.0"; sha256="12yjyb7a7jc86hdi3a3cavqxfzkhmds1m2vigzw5ihhx6028pa78"; depends=[]; broken = true; };
2227  inveRsion = derive2 { name="inveRsion"; version="1.43.0"; sha256="0h2q10xf4x22hy7780w4pvq488921wzjngly8qcc97sa8iacssk3"; depends=[haplo_stats]; broken = true; };
2228  iteremoval = derive2 { name="iteremoval"; version="1.15.1"; sha256="0bwl8lzxvf5azwyacv9x16l4kyi8l00xny2s83gp2kng5gyz8602"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; broken = true; };
2229  methyAnalysis = derive2 { name="methyAnalysis"; version="1.34.0"; sha256="05k3n7iy5ijidbnblbqqas8dsj8drwzbhyrbs8wl1ypkg51havi0"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; broken = true; };
2230  networkBMA = derive2 { name="networkBMA"; version="2.35.0"; sha256="0xa0b977apbr6p9kqk38582af635kp99csj32bsn2bf8pjsmd4d2"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; broken = true; };
2231  perturbatr = derive2 { name="perturbatr"; version="1.13.0"; sha256="0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; broken = true; };
2232  ppiStats = derive2 { name="ppiStats"; version="1.62.0"; sha256="0w5gkfah2y50x4wj5fn8i6ycx1x013mn9w4bs8r2vfqabpws1a81"; depends=[Biobase Category graph lattice RColorBrewer]; broken = true; };
2233  predictionet = derive2 { name="predictionet"; version="1.40.0"; sha256="1f3ghlcfnls9mx2hbs923rdz7kn0wdhy2csp1y1286c5q5dybrgh"; depends=[catnet igraph MASS penalized RBGL]; broken = true; };
2234  pulsedSilac = derive2 { name="pulsedSilac"; version="1.9.1"; sha256="1zb8xzs9h4rcrnmsfvrwb1qixn3jbnzxdwqgdrb82hgmxabmajlb"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment UpSetR]; broken = true; };
2235  scClassifR = derive2 { name="scClassifR"; version="1.2.0"; sha256="0p9l9q5ina0axrqvqn1y5wkfqi0nacxm3nm6ny34j53znv07b2zz"; depends=[ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; broken = true; };
2236  slinky = derive2 { name="slinky"; version="1.12.0"; sha256="05ywydvyz3jnzbhabhz1sd61hpy9nb22512zpbi48mv5wic1sv3v"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; broken = true; };
2237  tofsims = derive2 { name="tofsims"; version="1.22.0"; sha256="0da4843wbcr821yp8z3z4vd81qpm2lblckgd01fm89lmwj393z65"; depends=[ALS alsace KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; broken = true; };
2238  tspair = derive2 { name="tspair"; version="1.53.0"; sha256="04xxrm313mnknhc38vl1sx6hic2g1x1xaa5772qlc7ip957hz85k"; depends=[Biobase]; broken = true; };
2239}