tjh.dev
1{ lib, buildPerlPackage, fetchFromGitHub }:
2
3buildPerlPackage rec {
4 pname = "BioExtAlign";
5 version = "1.5.1";
6
7 outputs = [ "out" "dev" ];
8
9 src = fetchFromGitHub {
10 owner = "bioperl";
11 repo = "bioperl-ext";
12 rev = "bioperl-ext-release-${lib.replaceStrings ["."] ["-"] version}";
13 sha256 = "sha256-+0tZ6q3PFem8DWa2vq+njOLmjDvMB0JhD0FGk00lVMA=";
14 };
15
16 patches = [ ./fprintf.patch ];
17
18 # Do not install other Bio-ext packages
19 preConfigure = ''
20 cd Bio/Ext/Align
21 '';
22
23 # Disable tests as it requires Bio::Tools::Align which is in a different directory
24 buildPhase = ''
25 make
26 '';
27
28 meta = {
29 homepage = "https://github.com/bioperl/bioperl-ext";
30 description = "Write Perl Subroutines in Other Programming Languages";
31 longDescription = ''
32 Part of BioPerl Extensions (BioPerl-Ext) distribution, a collection of Bioperl C-compiled extensions.
33 '';
34 license = with lib.licenses; [ artistic1 ];
35 };
36}