tjh.dev
nixpkgs mirror (for testing)
github.com/NixOS/nixpkgs
nix
1{ version, rev, sourceSha256 }:
2
3{ lib, stdenv, fetchFromGitHub, cmake, makeWrapper
4, pkg-config, libX11, libuuid, xz, vtk, Cocoa }:
5
6let
7 itkGenericLabelInterpolatorSrc = fetchFromGitHub {
8 owner = "InsightSoftwareConsortium";
9 repo = "ITKGenericLabelInterpolator";
10 rev = "2f3768110ffe160c00c533a1450a49a16f4452d9";
11 hash = "sha256-Cm3jg14MMnbr/sP+gqR2Rh25xJjoRvpmY/jP/DKH978=";
12 };
13
14 itkAdaptiveDenoisingSrc = fetchFromGitHub {
15 owner = "ntustison";
16 repo = "ITKAdaptiveDenoising";
17 rev = "24825c8d246e941334f47968553f0ae388851f0c";
18 hash = "sha256-deJbza36c0Ohf9oKpO2T4po37pkyI+2wCSeGL4r17Go=";
19 };
20
21 itkSimpleITKFiltersSrc = fetchFromGitHub {
22 owner = "InsightSoftwareConsortium";
23 repo = "ITKSimpleITKFilters";
24 rev = "bb896868fc6480835495d0da4356d5db009592a6";
25 hash = "sha256-MfaIA0xxA/pzUBSwnAevr17iR23Bo5iQO2cSyknS3o4=";
26 };
27in
28
29stdenv.mkDerivation {
30 pname = "itk";
31 inherit version;
32
33 src = fetchFromGitHub {
34 owner = "InsightSoftwareConsortium";
35 repo = "ITK";
36 inherit rev;
37 sha256 = sourceSha256;
38 };
39
40 postPatch = ''
41 substituteInPlace CMake/ITKSetStandardCompilerFlags.cmake \
42 --replace "-march=corei7" "" \
43 --replace "-mtune=native" ""
44 substituteInPlace Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg/src/lib/openjp2/libopenjp2.pc.cmake.in \
45 --replace "@OPENJPEG_INSTALL_LIB_DIR@" "@OPENJPEG_INSTALL_FULL_LIB_DIR@"
46 ln -sr ${itkGenericLabelInterpolatorSrc} Modules/External/ITKGenericLabelInterpolator
47 ln -sr ${itkAdaptiveDenoisingSrc} Modules/External/ITKAdaptiveDenoising
48 ln -sr ${itkSimpleITKFiltersSrc} Modules/External/ITKSimpleITKFilters
49 '';
50
51 cmakeFlags = [
52 "-DBUILD_EXAMPLES=OFF"
53 "-DBUILD_SHARED_LIBS=ON"
54 "-DITK_FORBID_DOWNLOADS=ON"
55 "-DModule_ITKMINC=ON"
56 "-DModule_ITKIOMINC=ON"
57 "-DModule_ITKIOTransformMINC=ON"
58 "-DModule_SimpleITKFilters=ON"
59 "-DModule_ITKVtkGlue=ON"
60 "-DModule_ITKReview=ON"
61 "-DModule_MGHIO=ON"
62 "-DModule_AdaptiveDenoising=ON"
63 "-DModule_GenericLabelInterpolator=ON"
64 ];
65
66 nativeBuildInputs = [ cmake xz makeWrapper ];
67 buildInputs = [ libX11 libuuid vtk ] ++ lib.optionals stdenv.isDarwin [ Cocoa ];
68 # Due to ITKVtkGlue=ON and the additional dependencies needed to configure VTK 9
69 # (specifically libGL and libX11 on Linux),
70 # it's now seemingly necessary for packages that configure ITK to
71 # also include configuration deps of VTK, even if VTK is not required or available.
72 # These deps were propagated from VTK 9 in https://github.com/NixOS/nixpkgs/pull/206935,
73 # so we simply propagate them again from ITK.
74 # This admittedly is a hack and seems like an issue with VTK 9's CMake configuration.
75 propagatedBuildInputs = vtk.propagatedBuildInputs;
76
77 postInstall = ''
78 wrapProgram "$out/bin/h5c++" --prefix PATH ":" "${pkg-config}/bin"
79 '';
80
81 meta = {
82 description = "Insight Segmentation and Registration Toolkit";
83 homepage = "https://www.itk.org";
84 license = lib.licenses.asl20;
85 maintainers = with lib.maintainers; [viric];
86 };
87}