tjh.dev
1{ lib
2, fetchPypi
3, buildPythonPackage
4, pythonOlder
5, rustPlatform
6, bitstring
7, cachetools
8, cffi
9, deprecation
10, iconv
11, matplotlib
12, numpy
13, scipy
14, screed
15, hypothesis
16, pytest-xdist
17, pyyaml
18, pytestCheckHook
19}:
20
21buildPythonPackage rec {
22 pname = "sourmash";
23 version = "4.8.4";
24 format = "pyproject";
25 disabled = pythonOlder "3.8";
26
27 src = fetchPypi {
28 inherit pname version;
29 hash = "sha256-Q1hMESwzEHGXcd4XW4nLqU8cLTCxrqRgAOr1qB77roo=";
30 };
31
32 cargoDeps = rustPlatform.fetchCargoTarball {
33 inherit src;
34 name = "${pname}-${version}";
35 hash = "sha256-HisWvJgx15OfYoMzzqYm1JyY1/jmGXBSZZmuNaKTDjI=";
36 };
37
38 nativeBuildInputs = with rustPlatform; [
39 cargoSetupHook
40 maturinBuildHook
41 ];
42
43 buildInputs = [ iconv ];
44
45 propagatedBuildInputs = [
46 bitstring
47 cachetools
48 cffi
49 deprecation
50 matplotlib
51 numpy
52 scipy
53 screed
54 ];
55
56 pythonImportsCheck = [ "sourmash" ];
57 nativeCheckInputs = [
58 hypothesis
59 pytest-xdist
60 pytestCheckHook
61 pyyaml
62 ];
63
64 # TODO(luizirber): Working on fixing these upstream
65 disabledTests = [
66 "test_compare_no_such_file"
67 "test_do_sourmash_index_multiscaled_rescale_fail"
68 "test_metagenome_kreport_out_fail"
69 ];
70
71 meta = with lib; {
72 description = "Quickly search, compare, and analyze genomic and metagenomic data sets";
73 homepage = "https://sourmash.bio";
74 changelog = "https://github.com/sourmash-bio/sourmash/releases/tag/v${version}";
75 maintainers = with maintainers; [ luizirber ];
76 license = licenses.bsd3;
77 };
78}