tjh.dev
1{
2 lib,
3 buildDunePackage,
4 fetchurl,
5 bppsuite,
6 alcotest,
7 angstrom-unix,
8 biotk,
9 core,
10 gsl,
11 lacaml,
12 menhir,
13 menhirLib,
14 printbox-text,
15}:
16
17buildDunePackage rec {
18 pname = "phylogenetics";
19 version = "0.3.0";
20
21 src = fetchurl {
22 url = "https://github.com/biocaml/phylogenetics/releases/download/v${version}/phylogenetics-${version}.tbz";
23 hash = "sha256-3oZ9fMAXqOQ02rQ+8W8PZJWXOJLNe2qERrGOeTk3BKg=";
24 };
25
26 minimalOCamlVersion = "4.08";
27
28 nativeCheckInputs = [ bppsuite ];
29 checkInputs = [ alcotest ];
30 nativeBuildInputs = [ menhir ];
31 propagatedBuildInputs = [
32 angstrom-unix
33 biotk
34 core
35 gsl
36 lacaml
37 menhirLib
38 printbox-text
39 ];
40
41 checkPhase = ''
42 runHook preCheck
43 dune build @app/fulltest
44 runHook postCheck
45 '';
46 doCheck = true;
47
48 meta = with lib; {
49 description = "Algorithms and datastructures for phylogenetics";
50 homepage = "https://github.com/biocaml/phylogenetics";
51 license = licenses.cecill-b;
52 maintainers = [ maintainers.bcdarwin ];
53 mainProgram = "phylosim";
54 };
55}