tjh.dev
1{
2 lib,
3 python,
4 buildPythonPackage,
5 fetchFromGitHub,
6 cython,
7 pybind11,
8 tiledb,
9 numpy,
10 wheel,
11 isPy3k,
12 setuptools-scm,
13 psutil,
14 pandas,
15}:
16
17buildPythonPackage rec {
18 pname = "tiledb";
19 version = "0.26.2";
20 format = "setuptools";
21
22 src = fetchFromGitHub {
23 owner = "TileDB-Inc";
24 repo = "TileDB-Py";
25 rev = "refs/tags/${version}";
26 hash = "sha256-8c1l4zoD44SjaOUXlFUSho/y7oMNOEVM9ZlnRs1irV8=";
27 };
28
29 nativeBuildInputs = [
30 cython
31 pybind11
32 setuptools-scm
33 ];
34
35 buildInputs = [ tiledb ];
36
37 propagatedBuildInputs = [
38 numpy
39 wheel # No idea why but it is listed
40 ];
41
42 nativeCheckInputs = [
43 psutil
44 # optional
45 pandas
46 ];
47
48 TILEDB_PATH = tiledb;
49
50 disabled = !isPy3k; # Not bothering with python2 anymore
51
52 postPatch = ''
53 # Hardcode path to shared object
54 substituteInPlace tiledb/__init__.py --replace \
55 'os.path.join(lib_dir, lib_name)' 'os.path.join("${tiledb}/lib", lib_name)'
56
57 # Disable failing test
58 substituteInPlace tiledb/tests/test_examples.py --replace \
59 "test_docs" "dont_test_docs"
60 # these tests don't always fail
61 substituteInPlace tiledb/tests/test_libtiledb.py --replace \
62 "test_varlen_write_int_subarray" "dont_test_varlen_write_int_subarray" \
63 --replace "test_memory_cleanup" "dont_test_memory_cleanup" \
64 --replace "test_ctx_thread_cleanup" "dont_test_ctx_thread_cleanup"
65 substituteInPlace tiledb/tests/test_metadata.py --replace \
66 "test_metadata_consecutive" "dont_test_metadata_consecutive"
67 '';
68
69 checkPhase = ''
70 pushd "$TMPDIR"
71 ${python.interpreter} -m unittest tiledb.tests.all.suite_test
72 popd
73 '';
74 pythonImportsCheck = [ "tiledb" ];
75
76 meta = with lib; {
77 description = "Python interface to the TileDB storage manager";
78 homepage = "https://github.com/TileDB-Inc/TileDB-Py";
79 license = licenses.mit;
80 # tiledb/core.cc:556:30: error: ‘struct std::array<long unsigned int, 2>’ has no member named ‘second’
81 broken = true;
82 };
83}