tjh.dev
1{
2 lib,
3 buildPythonPackage,
4 fetchPypi,
5 glibcLocales,
6 importlib-metadata,
7 numpy,
8 pytestCheckHook,
9 pythonOlder,
10 setuptools,
11 setuptools-scm,
12}:
13
14buildPythonPackage rec {
15 pname = "pyfaidx";
16 version = "0.8.1.1";
17 pyproject = true;
18
19 disabled = pythonOlder "3.7";
20
21 src = fetchPypi {
22 inherit pname version;
23 hash = "sha256-bwSCNSYZ8sxWADyiIyG9sNB2S2VnlbweQGKx+psIaGs=";
24 };
25
26 build-system = [
27 setuptools
28 setuptools-scm
29 ];
30
31 dependencies = [ importlib-metadata ];
32
33 nativeCheckInputs = [
34 glibcLocales
35 numpy
36 pytestCheckHook
37 ];
38
39 disabledTestPaths = [
40 # FileNotFoundError: [Errno 2] No such file or directory: 'data/genes.fasta.gz'
41 "tests/test_Fasta_bgzip.py"
42 ];
43
44 pythonImportsCheck = [ "pyfaidx" ];
45
46 meta = with lib; {
47 description = "Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index";
48 homepage = "https://github.com/mdshw5/pyfaidx";
49 changelog = "https://github.com/mdshw5/pyfaidx/releases/tag/v${version}";
50 license = licenses.bsd3;
51 maintainers = with maintainers; [ jbedo ];
52 mainProgram = "faidx";
53 };
54}