tjh.dev
1{ lib
2, buildDunePackage
3, fetchurl
4, bppsuite
5, alcotest
6, angstrom-unix
7, biotk
8, core
9, gsl
10, lacaml
11, menhir
12, menhirLib
13, printbox-text
14}:
15
16buildDunePackage rec {
17 pname = "phylogenetics";
18 version = "0.3.0";
19
20 src = fetchurl {
21 url = "https://github.com/biocaml/phylogenetics/releases/download/v${version}/phylogenetics-${version}.tbz";
22 hash = "sha256-3oZ9fMAXqOQ02rQ+8W8PZJWXOJLNe2qERrGOeTk3BKg=";
23 };
24
25 minimalOCamlVersion = "4.08";
26
27 nativeCheckInputs = [ bppsuite ];
28 checkInputs = [ alcotest ];
29 nativeBuildInputs = [ menhir ];
30 propagatedBuildInputs = [
31 angstrom-unix
32 biotk
33 core
34 gsl
35 lacaml
36 menhirLib
37 printbox-text
38 ];
39
40 checkPhase = ''
41 runHook preCheck
42 dune build @app/fulltest
43 runHook postCheck
44 '';
45 doCheck = true;
46
47 meta = with lib; {
48 description = "Algorithms and datastructures for phylogenetics";
49 homepage = "https://github.com/biocaml/phylogenetics";
50 license = licenses.cecill-b;
51 maintainers = [ maintainers.bcdarwin ];
52 mainProgram = "phylosim";
53 };
54}