tjh.dev
nixpkgs mirror (for testing)
github.com/NixOS/nixpkgs
nix
1{
2 bwa,
3 lib,
4 fermi2,
5 ropebwt2,
6 fetchFromGitHub,
7 python3Packages,
8}:
9python3Packages.buildPythonApplication rec {
10 name = "tiddit";
11 version = "3.6.1";
12 pyproject = true;
13
14 src = fetchFromGitHub {
15 owner = "SciLifeLab";
16 repo = "TIDDIT";
17 tag = "TIDDIT-${version}";
18 hash = "sha256-OeqVQJDw0fmSDWIGab2qtTJCzZxqLY2XzRqaTRuPIdI=";
19 };
20
21 build-system = with python3Packages; [
22 setuptools
23 wheel
24 ];
25
26 dependencies = with python3Packages; [
27 cython
28 joblib
29 numpy
30 pysam
31 ];
32
33 makeWrapperArgs = [
34 "--prefix PATH : ${
35 lib.makeBinPath [
36 bwa
37 fermi2
38 ropebwt2
39 ]
40 }"
41 ];
42
43 meta = {
44 homepage = "https://github.com/SciLifeLab/TIDDIT";
45 description = "Identify chromosomal rearrangements using Mate Pair or Paired End sequencing data";
46 mainProgram = "tiddit";
47 license = lib.licenses.gpl3Only;
48 maintainers = with lib.maintainers; [ apraga ];
49 platforms = lib.platforms.unix;
50 };
51}