tjh.dev
Clone of https://github.com/NixOS/nixpkgs.git (to stress-test knotserver)
1{
2 lib,
3 stdenv,
4 fetchFromGitHub,
5}:
6
7stdenv.mkDerivation rec {
8 pname = "samblaster";
9 version = "0.1.26";
10
11 src = fetchFromGitHub {
12 owner = "GregoryFaust";
13 repo = "samblaster";
14 rev = "v.${version}";
15 sha256 = "0g24fq5hplnfgqkh3xqpg3lgx3wmxwnh9c7m6yw7pbi40lmgl1jv";
16 };
17
18 makeFlags = [ "CPP=${stdenv.cc.targetPrefix}c++" ];
19
20 installPhase = ''
21 mkdir -p $out/bin
22 cp samblaster $out/bin
23 '';
24
25 meta = with lib; {
26 description = "Tool for marking duplicates and extracting discordant/split reads from SAM/BAM files";
27 mainProgram = "samblaster";
28 maintainers = with maintainers; [ jbedo ];
29 license = licenses.mit;
30 homepage = "https://github.com/GregoryFaust/samblaster";
31 platforms = platforms.x86_64;
32 };
33}