tjh.dev
nixpkgs mirror (for testing)
github.com/NixOS/nixpkgs
nix
1{
2 lib,
3 stdenv,
4 fetchFromGitHub,
5 python3,
6 which,
7 ldc,
8 zlib,
9 lz4,
10}:
11
12stdenv.mkDerivation rec {
13 pname = "sambamba";
14 version = "1.0.1";
15
16 src = fetchFromGitHub {
17 owner = "biod";
18 repo = "sambamba";
19 rev = "v${version}";
20 hash = "sha256-3O9bHGpMuCgdR2Wm7Dv1VUjMT1QTn8K1hdwgjvwhFDw=";
21 fetchSubmodules = true;
22 };
23
24 nativeBuildInputs = [
25 which
26 python3
27 ldc
28 ];
29 buildInputs = [
30 zlib
31 lz4
32 ];
33
34 buildFlags = [
35 "CC=${stdenv.cc.targetPrefix}cc"
36 ];
37
38 # Upstream's install target is broken; copy manually
39 installPhase = ''
40 runHook preInstall
41
42 install -Dm755 bin/sambamba-${version} $out/bin/sambamba
43
44 runHook postInstall
45 '';
46
47 meta = with lib; {
48 description = "SAM/BAM processing tool";
49 mainProgram = "sambamba";
50 homepage = "https://lomereiter.github.io/sambamba/";
51 maintainers = with maintainers; [ jbedo ];
52 license = with licenses; gpl2;
53 platforms = platforms.x86_64;
54 };
55}