tjh.dev
nixpkgs mirror (for testing)
github.com/NixOS/nixpkgs
nix
1{
2 lib,
3 stdenv,
4 fetchurl,
5 fetchpatch,
6 zlib,
7 bzip2,
8 xz,
9 curl,
10 perl,
11}:
12
13stdenv.mkDerivation rec {
14 pname = "htslib";
15 version = "1.22";
16
17 src = fetchurl {
18 url = "https://github.com/samtools/htslib/releases/download/${version}/${pname}-${version}.tar.bz2";
19 hash = "sha256-YlDB3yl9tHdRbmCsjfRe11plLR8lsPN/EvWxcmnq/ek=";
20 };
21
22 patches = [
23 (fetchpatch {
24 url = "https://github.com/samtools/htslib/commit/31006e1c8edd02eb6321ed9be76b84fca5d20cb6.patch";
25 hash = "sha256-sbnkVmXIbs/Cn/msUUrJpJZCI2DHX5kpGSka2cccZIQ=";
26 })
27 ];
28
29 # perl is only used during the check phase.
30 nativeBuildInputs = [ perl ];
31
32 buildInputs = [
33 zlib
34 bzip2
35 xz
36 curl
37 ];
38
39 configureFlags =
40 if !stdenv.hostPlatform.isStatic then
41 [ "--enable-libcurl" ] # optional but strongly recommended
42 else
43 [
44 "--disable-libcurl"
45 "--disable-plugins"
46 ];
47
48 # In the case of static builds, we need to replace the build and install phases
49 buildPhase = lib.optional stdenv.hostPlatform.isStatic ''
50 make AR=$AR lib-static
51 make LDFLAGS=-static bgzip htsfile tabix
52 '';
53
54 installPhase = lib.optional stdenv.hostPlatform.isStatic ''
55 install -d $out/bin
56 install -d $out/lib
57 install -d $out/include/htslib
58 install -D libhts.a $out/lib
59 install -m644 htslib/*h $out/include/htslib
60 install -D bgzip htsfile tabix $out/bin
61 '';
62
63 preCheck = ''
64 patchShebangs test/
65 '';
66
67 enableParallelBuilding = true;
68
69 doCheck = true;
70
71 meta = with lib; {
72 description = "C library for reading/writing high-throughput sequencing data";
73 license = licenses.mit;
74 homepage = "http://www.htslib.org/";
75 platforms = platforms.unix;
76 maintainers = [ maintainers.mimame ];
77 };
78}