tjh.dev
Clone of https://github.com/NixOS/nixpkgs.git (to stress-test knotserver)
1{
2 lib,
3 stdenv,
4 fetchFromGitHub,
5 zlib,
6 python3,
7 bzip2,
8 xz,
9}:
10
11stdenv.mkDerivation rec {
12 pname = "bedtools";
13 version = "2.31.1";
14
15 src = fetchFromGitHub {
16 owner = "arq5x";
17 repo = "bedtools2";
18 rev = "v${version}";
19 sha256 = "sha256-rrk+FSv1bGL0D1lrIOsQu2AT7cw2T4lkDiCnzil5fpg=";
20 };
21
22 strictDeps = true;
23
24 nativeBuildInputs = [
25 python3
26 ];
27
28 buildInputs = [
29 zlib
30 bzip2
31 xz
32 ];
33
34 cxx = if stdenv.cc.isClang then "clang++" else "g++";
35 cc = if stdenv.cc.isClang then "clang" else "gcc";
36 buildPhase = "make prefix=$out SHELL=${stdenv.shell} CXX=${cxx} CC=${cc} -j $NIX_BUILD_CORES";
37 installPhase = "make prefix=$out SHELL=${stdenv.shell} CXX=${cxx} CC=${cc} install";
38
39 meta = with lib; {
40 description = "Powerful toolset for genome arithmetic";
41 license = licenses.gpl2;
42 homepage = "https://bedtools.readthedocs.io/en/latest/";
43 maintainers = with maintainers; [ jbedo ];
44 platforms = platforms.unix;
45 };
46}