tjh.dev
nixpkgs mirror (for testing)
github.com/NixOS/nixpkgs
nix
1{
2 stdenv,
3 lib,
4 fetchurl,
5 python3Packages,
6 cmake,
7 python3,
8}:
9
10python3Packages.buildPythonApplication rec {
11 pname = "obitools3";
12 version = "3.0.1b11";
13 format = "setuptools";
14
15 src = fetchurl {
16 url = "https://git.metabarcoding.org/obitools/${pname}/repository/v${version}/archive.tar.gz";
17 sha256 = "1x7a0nrr9agg1pfgq8i1j8r1p6c0jpyxsv196ylix1dd2iivmas1";
18 };
19
20 nativeBuildInputs = [
21 python3Packages.cython
22 cmake
23 ];
24
25 postPatch = lib.optionalString stdenv.hostPlatform.isAarch64 ''
26 substituteInPlace setup.py \
27 --replace "'-msse2'," ""
28 '';
29
30 preBuild = ''
31 substituteInPlace src/CMakeLists.txt --replace \$'{PYTHONLIB}' "$out/${python3.sitePackages}";
32 export NIX_CFLAGS_COMPILE="-L $out/${python3.sitePackages} $NIX_CFLAGS_COMPILE"
33 '';
34
35 dontConfigure = true;
36
37 doCheck = true;
38
39 meta = with lib; {
40 description = "Management of analyses and data in DNA metabarcoding";
41 mainProgram = "obi";
42 homepage = "https://git.metabarcoding.org/obitools/obitools3";
43 license = licenses.cecill20;
44 maintainers = [ maintainers.bzizou ];
45 platforms = platforms.all;
46 };
47}