tjh.dev
1{ stdenv, lib, fetchPypi, python, buildPythonPackage
2, cython, bzip2, lzo, numpy, numexpr, hdf5, six, c-blosc, mock }:
3
4with stdenv.lib;
5
6buildPythonPackage rec {
7 version = "3.5.2";
8 pname = "tables";
9
10 src = fetchPypi {
11 inherit pname version;
12 sha256 = "1hikrki0hx94ass31pn0jyz9iy0zhnkjacfk86m21cxsc8if685j";
13 };
14
15 buildInputs = [ hdf5 cython bzip2 lzo c-blosc ];
16 propagatedBuildInputs = [ numpy numexpr six mock ];
17
18 # The setup script complains about missing run-paths, but they are
19 # actually set.
20 setupPyBuildFlags = [
21 "--hdf5=${getDev hdf5}"
22 "--lzo=${getDev lzo}"
23 "--bzip2=${getDev bzip2}"
24 "--blosc=${getDev c-blosc}"
25 ];
26 # Run the test suite.
27 # It requires the build path to be in the python search path.
28 # These tests take quite some time.
29 # If the hdf5 library is built with zlib then there is only one
30 # test-failure. That is the same failure as described in the following
31 # github issue:
32 # https://github.com/PyTables/PyTables/issues/269
33 checkPhase = ''
34 ${python.interpreter} <<EOF
35 import sysconfig
36 import sys
37 import os
38 f = "lib.{platform}-{version[0]}.{version[1]}"
39 lib = f.format(platform=sysconfig.get_platform(),
40 version=sys.version_info)
41 build = os.path.join(os.getcwd(), 'build', lib)
42 sys.path.insert(0, build)
43 import tables
44 r = tables.test()
45 if not r.wasSuccessful():
46 sys.exit(1)
47 EOF
48 '';
49
50 # Disable tests until the failure described above is fixed.
51 doCheck = false;
52
53 meta = {
54 description = "Hierarchical datasets for Python";
55 homepage = http://www.pytables.org/;
56 license = stdenv.lib.licenses.bsd2;
57 };
58}