tjh.dev
1{ stdenv
2, buildPythonPackage
3, fetchPypi
4, isPy3k
5# python dependencies
6, click
7, configparser ? null
8, dateutil
9, funcsigs
10, future
11, futures
12, mock
13, networkx
14, nibabel
15, numpy
16, packaging
17, prov
18, psutil
19, pybids
20, pydot
21, pytest
22, pytest_xdist
23, pytest-forked
24, scipy
25, simplejson
26, traits
27, xvfbwrapper
28, pytestcov
29, codecov
30# other dependencies
31, which
32, bash
33, glibcLocales
34, callPackage
35}:
36
37assert !isPy3k -> configparser != null;
38
39let
40
41 # This is a temporary convenience package for changes waiting to be merged into the primary rdflib repo.
42 neurdflib = callPackage ./neurdflib.nix { };
43
44in
45
46buildPythonPackage rec {
47 pname = "nipype";
48 version = "1.2.0";
49
50 src = fetchPypi {
51 inherit pname version;
52 sha256 = "09azgfmb0992c3xqmi7n93pz95i4v37vc9kqmjh8c9jjxjzszdd5";
53 };
54
55 postPatch = ''
56 substituteInPlace nipype/interfaces/base/tests/test_core.py \
57 --replace "/usr/bin/env bash" "${bash}/bin/bash"
58 '';
59
60 propagatedBuildInputs = [
61 click
62 dateutil
63 funcsigs
64 future
65 networkx
66 neurdflib
67 nibabel
68 numpy
69 packaging
70 prov
71 psutil
72 pydot
73 scipy
74 simplejson
75 traits
76 xvfbwrapper
77 ] ++ stdenv.lib.optional (!isPy3k) [
78 configparser
79 futures
80 ];
81
82 checkInputs = [
83 pybids
84 codecov
85 glibcLocales
86 mock
87 pytest
88 pytest-forked
89 pytest_xdist
90 pytestcov
91 which
92 ];
93
94 # ignore tests which incorrect fail to detect xvfb
95 checkPhase = ''
96 LC_ALL="en_US.UTF-8" pytest -v nipype -k 'not display'
97 '';
98
99 meta = with stdenv.lib; {
100 homepage = https://nipy.org/nipype/;
101 description = "Neuroimaging in Python: Pipelines and Interfaces";
102 license = licenses.bsd3;
103 maintainers = with maintainers; [ ashgillman ];
104 };
105}