tjh.dev
1{ stdenv
2, buildPythonPackage
3, fetchPypi
4, isPy3k
5# python dependencies
6, click
7, configparser ? null
8, dateutil
9, funcsigs
10, future
11, futures
12, mock
13, networkx
14, nibabel
15, numpy
16, packaging
17, prov
18, psutil
19, pydot
20, pytest
21, pytest_xdist
22, pytest-forked
23, scipy
24, simplejson
25, traits
26, xvfbwrapper
27, pytestcov
28, codecov
29# other dependencies
30, which
31, bash
32, glibcLocales
33, callPackage
34}:
35
36assert !isPy3k -> configparser != null;
37
38let
39
40 # This is a temporary convenience package for changes waiting to be merged into the primary rdflib repo.
41 neurdflib = callPackage ./neurdflib.nix { };
42
43in
44
45buildPythonPackage rec {
46 pname = "nipype";
47 version = "1.1.8";
48
49 src = fetchPypi {
50 inherit pname version;
51 sha256 = "d5eec6de7d8e7020106c42b37d17f99de92824440cc79dfa6080f7c2e6d9fecc";
52 };
53
54 postPatch = ''
55 substituteInPlace nipype/interfaces/base/tests/test_core.py \
56 --replace "/usr/bin/env bash" "${bash}/bin/bash"
57 '';
58
59 propagatedBuildInputs = [
60 click
61 dateutil
62 funcsigs
63 future
64 networkx
65 neurdflib
66 nibabel
67 numpy
68 packaging
69 prov
70 psutil
71 pydot
72 scipy
73 simplejson
74 traits
75 xvfbwrapper
76 ] ++ stdenv.lib.optional (!isPy3k) [
77 configparser
78 futures
79 ];
80
81 checkInputs = [
82 codecov
83 glibcLocales
84 mock
85 pytest
86 pytest-forked
87 pytest_xdist
88 pytestcov
89 which
90 ];
91
92 checkPhase = ''
93 LC_ALL="en_US.UTF-8" pytest -v --doctest-modules nipype
94 '';
95
96 # See: https://github.com/nipy/nipype/issues/2839
97 doCheck = false;
98
99 meta = with stdenv.lib; {
100 homepage = http://nipy.org/nipype/;
101 description = "Neuroimaging in Python: Pipelines and Interfaces";
102 license = licenses.bsd3;
103 maintainers = with maintainers; [ ashgillman ];
104 };
105}