tjh.dev
1{ lib
2, buildPythonPackage
3, fetchPypi
4, isPy3k
5, numpy
6, six
7, bz2file
8, nose
9, mock
10}:
11
12buildPythonPackage rec {
13 pname = "nibabel";
14 version = "2.3.3";
15
16 src = fetchPypi {
17 inherit pname version;
18 sha256 = "b6366634c65b04464e62f3a9a8df1faa172f780ed7f1af1c6818b3dc2f1202c3";
19 };
20
21 propagatedBuildInputs = [
22 numpy
23 six
24 ] ++ lib.optional (!isPy3k) bz2file;
25
26 checkInputs = [ nose mock ];
27
28 checkPhase = let
29 excludeTests = lib.optionals isPy3k [
30 # https://github.com/nipy/nibabel/issues/691
31 "nibabel.gifti.tests.test_giftiio.test_read_deprecated"
32 "nibabel.gifti.tests.test_parse_gifti_fast.test_parse_dataarrays"
33 "nibabel.tests.test_minc1.test_old_namespace"
34 ];
35 # TODO: Add --with-doctest once all doctests pass
36 in ''
37 nosetests ${lib.concatMapStrings (test: "-e '${test}' ") excludeTests}
38 '';
39
40 meta = with lib; {
41 homepage = http://nipy.org/nibabel/;
42 description = "Access a multitude of neuroimaging data formats";
43 license = licenses.mit;
44 maintainers = with maintainers; [ ashgillman ];
45 };
46}