pyrox.dev
1{
2 lib,
3 fetchPypi,
4 buildPythonPackage,
5 stdenv,
6 pythonOlder,
7 rustPlatform,
8 bitstring,
9 cachetools,
10 cffi,
11 deprecation,
12 iconv,
13 matplotlib,
14 numpy,
15 scipy,
16 screed,
17 hypothesis,
18 pytest-xdist,
19 pyyaml,
20 pytestCheckHook,
21}:
22buildPythonPackage rec {
23 pname = "sourmash";
24 version = "4.8.14";
25 pyproject = true;
26 disabled = pythonOlder "3.9";
27
28 src = fetchPypi {
29 inherit pname version;
30 hash = "sha256-no99VjO1KVE+/JUOJcl0xOz3yZtMr70A8vE1rQVjMH8=";
31 };
32
33 cargoDeps = rustPlatform.fetchCargoVendor {
34 inherit src;
35 name = "${pname}-${version}";
36 hash = "sha256-DnJ0RFc03+rBg7yNdezgb/YuoQr3RKj+NeMyin/kSRk=";
37 };
38
39 nativeBuildInputs = with rustPlatform; [
40 cargoSetupHook
41 maturinBuildHook
42 bindgenHook
43 ];
44
45 buildInputs = [ iconv ];
46
47 propagatedBuildInputs = [
48 bitstring
49 cachetools
50 cffi
51 deprecation
52 matplotlib
53 numpy
54 scipy
55 screed
56 ];
57
58 pythonImportsCheck = [ "sourmash" ];
59 nativeCheckInputs = [
60 hypothesis
61 pytest-xdist
62 pytestCheckHook
63 pyyaml
64 ];
65
66 # TODO(luizirber): Working on fixing these upstream
67 disabledTests = [
68 "test_compare_no_such_file"
69 "test_do_sourmash_index_multiscaled_rescale_fail"
70 "test_metagenome_kreport_out_fail"
71 ];
72
73 meta = with lib; {
74 description = "Quickly search, compare, and analyze genomic and metagenomic data sets";
75 mainProgram = "sourmash";
76 homepage = "https://sourmash.bio";
77 changelog = "https://github.com/sourmash-bio/sourmash/releases/tag/v${version}";
78 maintainers = with maintainers; [ luizirber ];
79 license = licenses.bsd3;
80 };
81}