pyrox.dev
1{
2 lib,
3 buildPythonPackage,
4 pythonOlder,
5 fetchFromGitHub,
6 hatchling,
7 dask,
8 numpy,
9 python-dateutil,
10 spatial-image,
11 xarray,
12 zarr,
13 dask-image,
14 fsspec,
15 jsonschema,
16 nbmake,
17 pooch,
18 pytestCheckHook,
19 pytest-mypy,
20 urllib3,
21}:
22
23buildPythonPackage rec {
24 pname = "multiscale-spatial-image";
25 version = "2.0.2";
26 pyproject = true;
27
28 disabled = pythonOlder "3.8";
29
30 src = fetchFromGitHub {
31 owner = "spatial-image";
32 repo = "multiscale-spatial-image";
33 tag = "v${version}";
34 hash = "sha256-aJp9RrCy88XFpM5GU7jADHQZFNZgXvlqSsCbmay3gww=";
35 };
36
37 build-system = [ hatchling ];
38
39 dependencies = [
40 dask
41 numpy
42 python-dateutil
43 spatial-image
44 xarray
45 zarr
46 ];
47
48 optional-dependencies = {
49 dask-image = [ dask-image ];
50 #itk = [
51 # itk-filtering # not in nixpkgs yet
52 #];
53 test = [
54 dask-image
55 fsspec
56 #ipfsspec # not in nixpkgs
57 #itk-filtering # not in nixpkgs
58 jsonschema
59 nbmake
60 pooch
61 pytest-mypy
62 urllib3
63 ];
64 };
65
66 nativeCheckInputs = [ pytestCheckHook ] ++ optional-dependencies.test;
67
68 doCheck = false; # all test files try to download data
69
70 pythonImportsCheck = [ "multiscale_spatial_image" ];
71
72 meta = {
73 description = "Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF";
74 homepage = "https://github.com/spatial-image/multiscale-spatial-image";
75 changelog = "https://github.com/spatial-image/multiscale-spatial-image/releases/tag/v${version}";
76 license = lib.licenses.asl20;
77 maintainers = with lib.maintainers; [ bcdarwin ];
78 };
79}