pyrox.dev
1{
2 lib,
3 fetchPypi,
4 buildPythonPackage,
5 pythonOlder,
6 rustPlatform,
7 bitstring,
8 cachetools,
9 cffi,
10 deprecation,
11 iconv,
12 matplotlib,
13 numpy,
14 scipy,
15 screed,
16 hypothesis,
17 pytest-xdist,
18 pyyaml,
19 pytestCheckHook,
20}:
21
22buildPythonPackage rec {
23 pname = "sourmash";
24 version = "4.8.4";
25 format = "pyproject";
26 disabled = pythonOlder "3.8";
27
28 src = fetchPypi {
29 inherit pname version;
30 hash = "sha256-Q1hMESwzEHGXcd4XW4nLqU8cLTCxrqRgAOr1qB77roo=";
31 };
32
33 cargoDeps = rustPlatform.fetchCargoTarball {
34 inherit src;
35 name = "${pname}-${version}";
36 hash = "sha256-HisWvJgx15OfYoMzzqYm1JyY1/jmGXBSZZmuNaKTDjI=";
37 };
38
39 nativeBuildInputs = with rustPlatform; [
40 cargoSetupHook
41 maturinBuildHook
42 ];
43
44 buildInputs = [ iconv ];
45
46 propagatedBuildInputs = [
47 bitstring
48 cachetools
49 cffi
50 deprecation
51 matplotlib
52 numpy
53 scipy
54 screed
55 ];
56
57 pythonImportsCheck = [ "sourmash" ];
58 nativeCheckInputs = [
59 hypothesis
60 pytest-xdist
61 pytestCheckHook
62 pyyaml
63 ];
64
65 # TODO(luizirber): Working on fixing these upstream
66 disabledTests = [
67 "test_compare_no_such_file"
68 "test_do_sourmash_index_multiscaled_rescale_fail"
69 "test_metagenome_kreport_out_fail"
70 ];
71
72 meta = with lib; {
73 description = "Quickly search, compare, and analyze genomic and metagenomic data sets";
74 mainProgram = "sourmash";
75 homepage = "https://sourmash.bio";
76 changelog = "https://github.com/sourmash-bio/sourmash/releases/tag/v${version}";
77 maintainers = with maintainers; [ luizirber ];
78 license = licenses.bsd3;
79 };
80}