pyrox.dev
1{
2 lib,
3 buildPythonPackage,
4 fetchFromGitHub,
5 setuptools,
6 cython,
7 oldest-supported-numpy,
8 requests,
9 decorator,
10 natsort,
11 numpy,
12 pandas,
13 scipy,
14 h5py,
15 hdmedians,
16 biom-format,
17 python,
18 pytestCheckHook,
19}:
20
21buildPythonPackage rec {
22 pname = "scikit-bio";
23 version = "0.6.0";
24 pyproject = true;
25
26 src = fetchFromGitHub {
27 owner = "scikit-bio";
28 repo = "scikit-bio";
29 rev = "refs/tags/${version}";
30 hash = "sha256-v8/r52pJpMi34SekPQBf7CqRbs+ZEyPR3WO5RBB7uKg=";
31 };
32
33 build-system = [
34 setuptools
35 cython
36 oldest-supported-numpy
37 ];
38
39 dependencies = [
40 requests
41 decorator
42 natsort
43 numpy
44 pandas
45 scipy
46 h5py
47 hdmedians
48 biom-format
49 ];
50
51 nativeCheckInputs = [ pytestCheckHook ];
52
53 # only the $out dir contains the built cython extensions, so we run the tests inside there
54 pytestFlagsArray = [ "${placeholder "out"}/${python.sitePackages}/skbio" ];
55
56 pythonImportsCheck = [ "skbio" ];
57
58 meta = {
59 homepage = "http://scikit-bio.org/";
60 description = "Data structures, algorithms and educational resources for bioinformatics";
61 license = lib.licenses.bsd3;
62 maintainers = with lib.maintainers; [ tomasajt ];
63 };
64}