pyrox.dev
1{
2 lib,
3 buildPythonPackage,
4 fetchFromGitHub,
5 hatch-vcs,
6 hatchling,
7 pytestCheckHook,
8 attrs,
9 importlib-resources,
10 jinja2,
11 looseversion,
12 matplotlib,
13 nibabel,
14 nilearn,
15 nipype,
16 nitransforms,
17 numpy,
18 packaging,
19 pandas,
20 pybids,
21 pyyaml,
22 scikit-image,
23 scipy,
24 seaborn,
25 svgutils,
26 templateflow,
27 traits,
28 transforms3d,
29}:
30
31buildPythonPackage rec {
32 pname = "niworkflows";
33 version = "1.10.1";
34 pyproject = true;
35
36 src = fetchFromGitHub {
37 owner = "nipreps";
38 repo = "niworkflows";
39 rev = "refs/tags/${version}";
40 hash = "sha256-ZOn3KSaPAA8zTdyexrjF9Wkb5C5qA/5eSJahg2DcX20=";
41 };
42
43 postPatch = ''
44 substituteInPlace pyproject.toml --replace '"traits < 6.4"' '"traits"'
45 '';
46
47 nativeBuildInputs = [
48 hatch-vcs
49 hatchling
50 ];
51
52 propagatedBuildInputs = [
53 attrs
54 importlib-resources
55 jinja2
56 looseversion
57 matplotlib
58 nibabel
59 nilearn
60 nipype
61 nitransforms
62 numpy
63 packaging
64 pandas
65 pybids
66 pyyaml
67 scikit-image
68 scipy
69 seaborn
70 svgutils
71 templateflow
72 traits
73 transforms3d
74 ];
75
76 env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
77
78 nativeCheckInputs = [ pytestCheckHook ];
79 preCheck = ''export HOME=$(mktemp -d)'';
80 pytestFlagsArray = [ "niworkflows" ];
81 # try to download data:
82 disabledTests = [
83 "test_GenerateCifti"
84 "ROIsPlot"
85 "ROIsPlot2"
86 "test_SimpleShowMaskRPT"
87 "test_cifti_surfaces_plot"
88 "niworkflows.utils.misc.get_template_specs"
89 "niworkflows.interfaces.cifti._prepare_cifti"
90 ];
91 disabledTestPaths = [ "niworkflows/tests/test_registration.py" ];
92
93 pythonImportsCheck = [ "niworkflows" ];
94
95 meta = with lib; {
96 description = "Common workflows for MRI (anatomical, functional, diffusion, etc.)";
97 mainProgram = "niworkflows-boldref";
98 homepage = "https://github.com/nipreps/niworkflows";
99 changelog = "https://github.com/nipreps/niworkflows/blob/${src.rev}/CHANGES.rst";
100 license = licenses.asl20;
101 maintainers = with maintainers; [ bcdarwin ];
102 };
103}