pyrox.dev
1{ lib
2, buildPythonPackage
3, fetchFromGitHub
4, numpy
5, pytestCheckHook
6, pythonOlder
7, zlib
8}:
9
10buildPythonPackage rec {
11 pname = "pybigwig";
12 version = "0.3.22";
13 format = "setuptools";
14
15 disabled = pythonOlder "3.7";
16
17 src = fetchFromGitHub {
18 owner = "deeptools";
19 repo = "pyBigWig";
20 rev = "refs/tags/${version}";
21 hash = "sha256-wJC5eXIC9PNlbCtmq671WuoIJVkh3aX7K6WArJWjyFg=";
22 };
23
24 buildInputs = [
25 zlib
26 ];
27
28 nativeCheckInputs = [
29 numpy
30 pytestCheckHook
31 ];
32
33 pythonImportsCheck = [
34 "pyBigWig"
35 ];
36
37 pytestFlagsArray = [
38 "pyBigWigTest/test*.py"
39 ];
40
41 disabledTests = [
42 # Test file is donwloaded from GitHub
43 "testAll"
44 "testBigBed"
45 "testFoo"
46 "testNumpyValues"
47 ];
48
49 meta = with lib; {
50 description = "File access to bigBed files, and read and write access to bigWig files";
51 longDescription = ''
52 A Python extension, written in C, for quick access to bigBed files
53 and access to and creation of bigWig files. This extension uses
54 libBigWig for local and remote file access.
55 '';
56 homepage = "https://github.com/deeptools/pyBigWig";
57 changelog = "https://github.com/deeptools/pyBigWig/releases/tag/${version}";
58 license = licenses.mit;
59 maintainers = with maintainers; [ scalavision ];
60 };
61}