pyrox.dev
1{ lib
2, buildPythonPackage
3, fetchPypi
4, pythonOlder
5, hatchling
6, hatch-vcs
7, numpy
8, packaging
9, importlib-resources
10, pydicom
11, pillow
12, h5py
13, scipy
14, git
15, pytest-doctestplus
16, pytest-httpserver
17, pytest-xdist
18, pytestCheckHook
19}:
20
21buildPythonPackage rec {
22 pname = "nibabel";
23 version = "5.1.0";
24 format = "pyproject";
25
26 disabled = pythonOlder "3.8";
27
28 src = fetchPypi {
29 inherit pname version;
30 hash = "sha256-znPKXpVyCechmiI8tx93I1yd8qz00/J/hhujjpSBrFM=";
31 };
32
33 nativeBuildInputs = [
34 hatchling
35 hatch-vcs
36 ];
37
38 propagatedBuildInputs = [
39 numpy
40 packaging
41 ] ++ lib.optionals (pythonOlder "3.9") [
42 importlib-resources
43 ];
44
45 passthru.optional-dependencies = rec {
46 all = dicom
47 ++ dicomfs
48 ++ minc2
49 ++ spm
50 ++ zstd;
51 dicom = [
52 pydicom
53 ];
54 dicomfs = [
55 pillow
56 ] ++ dicom;
57 minc2 = [
58 h5py
59 ];
60 spm = [
61 scipy
62 ];
63 zstd = [
64 # TODO: pyzstd
65 ];
66 };
67
68 nativeCheckInputs = [
69 git
70 pytest-doctestplus
71 pytest-httpserver
72 pytest-xdist
73 pytestCheckHook
74 ] ++ passthru.optional-dependencies.all;
75
76 preCheck = ''
77 export PATH=$out/bin:$PATH
78 '';
79
80 disabledTests = [
81 # https://github.com/nipy/nibabel/issues/951
82 "test_filenames"
83 ];
84
85 meta = with lib; {
86 homepage = "https://nipy.org/nibabel";
87 description = "Access a multitude of neuroimaging data formats";
88 license = licenses.mit;
89 maintainers = with maintainers; [ ashgillman ];
90 };
91}