pyrox.dev
1{ lib
2, buildPythonPackage
3, pythonOlder
4, fetchPypi
5, bwa
6, cffi
7, zlib
8}:
9
10buildPythonPackage rec {
11 pname = "bwapy";
12 version = "0.1.4";
13 disabled = pythonOlder "3.6";
14
15 src = fetchPypi {
16 inherit pname version;
17 sha256 = "090qwx3vl729zn3a7sksbviyg04kc71gpbm3nd8dalqp673x1npw";
18 };
19 postPatch = ''
20 # replace bundled bwa
21 rm -r bwa/*
22 cp ${bwa}/lib/*.a ${bwa}/include/*.h bwa/
23
24 substituteInPlace setup.py \
25 --replace 'setuptools>=49.2.0' 'setuptools'
26 '';
27
28 buildInputs = [ zlib bwa ];
29
30 propagatedBuildInputs = [ cffi ];
31
32 # no tests
33 doCheck = false;
34 pythonImportsCheck = [ "bwapy" ];
35
36 meta = with lib; {
37 homepage = "https://github.com/ACEnglish/acebinf";
38 description = "Python bindings to bwa mem aligner";
39 license = licenses.mpl20;
40 maintainers = with maintainers; [ ris ];
41 };
42}