pyrox.dev
1{ lib
2, python
3, buildPythonPackage
4, fetchFromGitHub
5, cython
6, pybind11
7, tiledb
8, numpy
9, wheel
10, isPy3k
11, setuptools-scm
12, psutil
13, pandas
14}:
15
16buildPythonPackage rec {
17 pname = "tiledb";
18 version = "0.16.3";
19 format = "setuptools";
20
21 src = fetchFromGitHub {
22 owner = "TileDB-Inc";
23 repo = "TileDB-Py";
24 rev = "refs/tags/${version}";
25 sha256 = "sha256-Tg2MHlLwwcpXoHoflaNWXmXr6s7dg3IJou4PZBahRzc=";
26 };
27
28 nativeBuildInputs = [
29 cython
30 pybind11
31 setuptools-scm
32 ];
33
34 buildInputs = [
35 tiledb
36 ];
37
38 propagatedBuildInputs = [
39 numpy
40 wheel # No idea why but it is listed
41 ];
42
43 checkInputs = [
44 psutil
45 # optional
46 pandas
47 ];
48
49 TILEDB_PATH = tiledb;
50
51 SETUPTOOLS_SCM_PRETEND_VERSION = version;
52
53 disabled = !isPy3k; # Not bothering with python2 anymore
54
55 postPatch = ''
56 # Hardcode path to shared object
57 substituteInPlace tiledb/__init__.py --replace \
58 'os.path.join(lib_dir, lib_name)' 'os.path.join("${tiledb}/lib", lib_name)'
59
60 # Disable failing test
61 substituteInPlace tiledb/tests/test_examples.py --replace \
62 "test_docs" "dont_test_docs"
63 # these tests don't always fail
64 substituteInPlace tiledb/tests/test_libtiledb.py --replace \
65 "test_varlen_write_int_subarray" "dont_test_varlen_write_int_subarray" \
66 --replace "test_memory_cleanup" "dont_test_memory_cleanup" \
67 --replace "test_ctx_thread_cleanup" "dont_test_ctx_thread_cleanup"
68 substituteInPlace tiledb/tests/test_metadata.py --replace \
69 "test_metadata_consecutive" "dont_test_metadata_consecutive"
70 '';
71
72 checkPhase = ''
73 pushd "$TMPDIR"
74 ${python.interpreter} -m unittest tiledb.tests.all.suite_test
75 popd
76 '';
77 pythonImportsCheck = [ "tiledb" ];
78
79 meta = with lib; {
80 description = "Python interface to the TileDB storage manager";
81 homepage = "https://github.com/TileDB-Inc/TileDB-Py";
82 license = licenses.mit;
83 maintainers = with maintainers; [ fridh ];
84 # tiledb/core.cc:556:30: error: ‘struct std::array<long unsigned int, 2>’ has no member named ‘second’
85 broken = true;
86 };
87}