pyrox.dev
1{ lib
2, buildPythonPackage
3, fetchpatch
4, fetchPypi
5, pythonOlder
6, cython
7, numpy
8, scipy
9, scikit-learn
10, persim
11, pytestCheckHook
12}:
13
14buildPythonPackage rec {
15 pname = "ripser";
16 version = "0.6.1";
17 disabled = pythonOlder "3.6";
18
19 src = fetchPypi {
20 inherit pname version;
21 sha256 = "335112a0f94532ccbe686db7826ee8d0714b32f65891abf92c0a02f3cb0fc5fd";
22 };
23
24 patches = [
25 (fetchpatch {
26 url = "https://github.com/scikit-tda/ripser.py/commit/4baa248994cee9a65d710fac91809bad8ed4e5f1.patch";
27 sha256 = "sha256-J/nxMOGOUiBueojJrUlAaXwktHDploYG/XL8/siF2kY=";
28 })
29 ];
30
31 propagatedBuildInputs = [
32 cython
33 numpy
34 scipy
35 scikit-learn
36 persim
37 ];
38
39 checkInputs = [
40 pytestCheckHook
41 ];
42
43 preCheck = ''
44 # specifically needed for darwin
45 export HOME=$(mktemp -d)
46 mkdir -p $HOME/.matplotlib
47 echo "backend: ps" > $HOME/.matplotlib/matplotlibrc
48 '';
49
50 meta = with lib; {
51 description = "A Lean Persistent Homology Library for Python";
52 homepage = "https://ripser.scikit-tda.org";
53 license = licenses.mit;
54 maintainers = [ maintainers.costrouc ];
55 };
56}