pyrox.dev
1{ lib
2, buildPythonPackage
3, fetchPypi
4, pythonOlder
5, nose
6, matplotlib
7, nibabel
8, numpy
9, scipy
10, sympy
11, python
12}:
13
14buildPythonPackage rec {
15 version = "0.5.0";
16 pname = "nipy";
17 disabled = pythonOlder "2.6";
18
19 src = fetchPypi {
20 inherit pname version;
21 sha256 = "a8a2c97ce854fece4aced5a6394b9fdca5846150ad6d2a36b86590924af3c848";
22 };
23
24 buildInputs = lib.optionals doCheck [ nose ];
25 propagatedBuildInputs = [ matplotlib nibabel numpy scipy sympy ];
26
27 checkPhase = '' # wants to be run in a different directory
28 mkdir nosetests
29 cd nosetests
30 ${python.interpreter} -c "import nipy; nipy.test()"
31 rm -rf .
32 '';
33
34 # failing test:
35 # nipy.algorithms.statistics.models.tests.test_olsR.test_results(11.593139639404727, 11.593140144880794, 6) # disagrees by 1 at 6th decimal place
36 # erroring tests:
37 # nipy.modalities.fmri.fmristat.tests.test_FIAC.test_altprotocol
38 # nipy.modalities.fmri.fmristat.tests.test_FIAC.test_agreement
39 # nipy.tests.test_scripts.test_nipy_4d_realign # because `nipy_4d_realign` script isn't found at test time; works from nix-shell, so could be patched
40 # nipy.tests.test_scripts.test_nipy_3_4d # ditto re.: `nipy_3_4d` script
41 doCheck = false;
42
43 meta = with lib; {
44 homepage = "https://nipy.org/nipy";
45 description = "Software for structural and functional neuroimaging analysis";
46 license = licenses.bsd3;
47 };
48
49}