pyrox.dev
1{ lib
2, buildPythonPackage
3, fetchPypi
4, pythonOlder
5, pytestCheckHook
6, matplotlib
7, nibabel
8, numpy
9, scikit-fuzzy
10, scikitimage
11, scikit-learn
12, scipy
13, statsmodels
14}:
15
16buildPythonPackage rec {
17 pname = "intensity-normalization";
18 version = "2.2.3";
19 format = "setuptools";
20
21 disabled = pythonOlder "3.6";
22
23 src = fetchPypi {
24 pname = "intensity_normalization";
25 inherit version;
26 sha256 = "sha256-Yjd4hXmbT87xNKSqc6zkKNisOVhQzQAUZI5wBiI/UBk=";
27 };
28
29 propagatedBuildInputs = [
30 matplotlib
31 nibabel
32 numpy
33 scikit-fuzzy
34 scikitimage
35 scikit-learn
36 scipy
37 statsmodels
38 ];
39
40 checkInputs = [
41 pytestCheckHook
42 ];
43
44 postPatch = ''
45 substituteInPlace setup.cfg \
46 --replace "pytest-runner" ""
47 '';
48
49 pythonImportsCheck = [
50 "intensity_normalization"
51 "intensity_normalization.normalize"
52 "intensity_normalization.plot"
53 "intensity_normalization.util"
54 ];
55
56 meta = with lib; {
57 homepage = "https://github.com/jcreinhold/intensity-normalization";
58 description = "MRI intensity normalization tools";
59 maintainers = with maintainers; [ bcdarwin ];
60 license = licenses.asl20;
61 # depends on simpleitk python wrapper which is not packaged yet
62 broken = true;
63 };
64}