pyrox.dev
1{ lib
2, buildPythonPackage
3, fetchFromGitHub
4, pytestCheckHook
5, pythonOlder
6}:
7
8buildPythonPackage rec {
9 pname = "dendropy";
10 version = "4.5.1";
11 format = "setuptools";
12
13 disabled = pythonOlder "3.7";
14
15 src = fetchFromGitHub {
16 owner = "jeetsukumaran";
17 repo = pname;
18 rev = "v${version}";
19 hash = "sha256-FP0+fJkkFtSysPxoHXjyMgF8pPin7aRyzmHe9bH8LlM=";
20 };
21
22 checkInputs = [
23 pytestCheckHook
24 ];
25
26 disabledTests = [
27 # FileNotFoundError: [Errno 2] No such file or directory: 'paup'
28 "test_basic_split_count_with_incorrect_rootings_raises_error"
29 "test_basic_split_count_with_incorrect_weight_treatment_raises_error"
30 "test_basic_split_counting_under_different_rootings"
31 "test_group1"
32 # AssertionError: 6 != 5
33 "test_by_num_lineages"
34 # AttributeError: module 'collections' has no attribute 'Iterable'
35 "test_findall_multiple"
36 ];
37
38 pythonImportsCheck = [
39 "dendropy"
40 ];
41
42 meta = with lib; {
43 description = "Python library for phylogenetic computing";
44 homepage = "https://dendropy.org/";
45 license = licenses.bsd3;
46 maintainers = with maintainers; [ unode ];
47 };
48}