pyrox.dev
1{ lib
2, buildPythonPackage
3, fetchPypi
4, cython
5, lockfile
6, cachecontrol
7, decorator
8, ipython
9, matplotlib
10, natsort
11, numpy
12, pandas
13, scipy
14, hdmedians
15, scikit-learn
16, coverage
17, python
18, isPy3k
19}:
20
21buildPythonPackage rec {
22 version = "0.5.6";
23 pname = "scikit-bio";
24 disabled = !isPy3k;
25
26 src = fetchPypi {
27 inherit pname version;
28 sha256 = "48b73ec53ce0ff2c2e3e05f3cfcf93527c1525a8d3e9dd4ae317b4219c37f0ea";
29 };
30
31 buildInputs = [ cython ];
32 checkInputs = [ coverage ];
33 propagatedBuildInputs = [ lockfile cachecontrol decorator ipython matplotlib natsort numpy pandas scipy hdmedians scikit-learn ];
34
35 # cython package not included for tests
36 doCheck = false;
37
38 checkPhase = ''
39 ${python.interpreter} -m skbio.test
40 '';
41
42 pythonImportsCheck = [ "skbio" ];
43
44 meta = with lib; {
45 homepage = "http://scikit-bio.org/";
46 description = "Data structures, algorithms and educational resources for bioinformatics";
47 license = licenses.bsd3;
48 platforms = [ "x86_64-linux" "x86_64-darwin" ];
49 maintainers = [ maintainers.costrouc ];
50 };
51}