Fix five places where atgc's output did not match its documentation. Suggested ffmpeg commands now write <stem>-fixed.mp4 beside an input a conversion would otherwise overwrite, the repo edit and repo delete examples render one command per line, and the help test fails if clap ever folds an Examples: block again. search, doctor local and doctor remote now read the checkout's single Tangled remote through checkout_remote, so a GitHub origin beside a tangled remote no longer loses the repo.
Ticket-reference refusals now name atgc issue view on issue commands, and a resubmit whose branch matches but whose source repo differs says to pass --fork <remote> instead of telling the reader to check out the branch they are already on. Tests cover the ffmpeg output paths, the folded-examples check, the GitHub-origin fallback in all three commands, and both resubmit refusals.
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