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12345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970717273747576{ lib, buildPythonPackage, fetchFromGitHub,
cython, numpy, scipy, scikit-learn, joblib, six,
# test pytestCheckHook,}:
buildPythonPackage rec { pname = "hdbscan"; version = "0.8.41"; format = "setuptools";
src = fetchFromGitHub { owner = "scikit-learn-contrib"; repo = "hdbscan"; tag = "release-${version}"; hash = "sha256-4uwWoNkrdLB2KzDAksPupdgkIFBgTahzravOtu1WYws="; };
pythonRemoveDeps = [ "cython" ];
nativeBuildInputs = [ cython joblib numpy scikit-learn scipy six ];
preCheck = '' cd hdbscan/tests rm __init__.py '';
nativeCheckInputs = [ pytestCheckHook ];
disabledTests = [ # known flaky tests: https://github.com/scikit-learn-contrib/hdbscan/issues/420 "test_mem_vec_diff_clusters" "test_all_points_mem_vec_diff_clusters" "test_approx_predict_diff_clusters" # another flaky test https://github.com/scikit-learn-contrib/hdbscan/issues/421 "test_hdbscan_boruvka_balltree_matches" # more flaky tests https://github.com/scikit-learn-contrib/hdbscan/issues/570 "test_hdbscan_boruvka_balltree" "test_hdbscan_best_balltree_metric" # "got an unexpected keyword argument" "test_hdbscan_badargs" ];
disabledTestPaths = [ # joblib.externals.loky.process_executor.BrokenProcessPool: "test_branches.py" ];
pythonImportsCheck = [ "hdbscan" ];
meta = { description = "Hierarchical Density-Based Spatial Clustering of Applications with Noise, a clustering algorithm with a scikit-learn compatible API"; homepage = "https://github.com/scikit-learn-contrib/hdbscan"; changelog = "https://github.com/scikit-learn-contrib/hdbscan/releases/tag/release-${version}"; license = lib.licenses.bsd3; maintainers = [ ]; };}