Hierarchical annotation of immune cells in scRNA-Seq data based on ssGSEA algorithm. Fork for large datasets with QOL improvements.
byarielm.fyi
1"","barcodes","cell_type"
2"1","CZINY_0057_AGATCCATCGGTGTAT","ILC1"
3"2","CZI_IA10471910_CZI_IA10472006_GTGCTTCTCTACTCAT","ILC3"
4"3","CZINY_0064_GTGGAGAGTAGATCCT","ILC3"
5"4","CZINY_0058_GAACACTAGATAGTCA","ILC3"
6"5","CZINY_0051_AAGCATCTCTCATAGG","ILC3"
7"6","CZINY_0059_TTGAGTGAGTTTCTTC","ILC3"
8"7","Pan_T8010330_TCCCGATTCTGCGTAA","ILC3"
9"8","CZINY_0057_CCGATCTCATACCAGT","ILC3"
10"9","CZINY_0060_TAAGTCGAGTGGTCAG","ILC3"
11"10","CZINY_0063_GGTCTGGAGAGAGCGG","ILC3"
12"11","CZINY_0051_ATGCGATGTAATGCGG","ILC3"
13"12","CZI_IA9924321_CZI_IA9924369_GAAACTCAGTACGCCC","ILC3"
14"13","CZINY_0051_ATCGGATTCTACCAGA","ILC3"
15"14","CZINY_0052_GCCCAGAGTTCGTGCG","ILC3"
16"15","CZINY_0056_CTGCTCACACGTACAT","ILC3"
17"16","CZINY_0051_GTCGTTCGTTAATGAG","ILC3"
18"17","CZI_IA10471912_CZI_IA10472008_TGGACGCCACGACGAA","ILC3"
19"18","CZINY_0058_ATGAGTCTCCATACTT","ILC1"
20"19","CZINY_0058_GCACGGTTCGTCTCAC","ILC1"
21"20","CZINY_0050_CCCTTAGAGGCCTGCT","ILC3"
22"21","CZINY_0051_ATCGTGAAGTTGAAAC","ILC3"
23"22","CZINY_0058_CTCAACCAGTCATCCA","ILC3"
24"23","CZINY_0055_AGGGTTTCAATTTCCT","ILC3"
25"24","CZINY_0058_TTTCCTCTCATGTCTT","ILC3"
26"25","CZINY_0064_CCATAAGGTGATTAGA","ILC3"
27"26","Pan_T7935495_GCTTGAACACTAAGTC","ILC3"
28"27","CZINY_0059_AGATCGTGTTCCAGGC","ILC3"
29"28","CZI_IA10471909_CZI_IA10472005_ACGGGTCGTCTAGTGT","ILC3"
30"29","Pan_T7991595_AGCATACGTCCGTTAA","ILC3"
31"30","Pan_T7917820_GGATTACTCCCTTGTG","ILC1"
32"31","CZINY_0059_TAGATCGTCAATCCAG","ILC3"
33"32","Pan_T7991590_ACTTTCATCACAATGC","ILC3"
34"33","CZINY_0064_CTATAGGTCAACCCGG","ILC1"
35"34","CZINY_0064_ACAGAAATCTGTTGGA","ILC3"
36"35","Pan_T7935493_GAAACTCAGACAATAC","ILC3"
37"36","CZINY_0052_CCATAAGTCAAGCCCG","ILC3"
38"37","CZINY_0053_AAGATAGTCCCATAGA","ILC3"
39"38","CZINY_0057_CATCCGTCAGCTGGTC","ILC3"
40"39","CZINY_0058_TGTACAGGTCACCTTC","ILC3"
41"40","Pan_T7917820_ACTTACTTCGGTCTAA","ILC3"
42"41","CZINY_0056_AGGGCTCGTACGTGAG","ILC3"
43"42","Pan_T7991589_GTCACGGGTAATCGTC","ILC3"
44"43","CZINY_0049_CACCAAAAGGACCCAA","ILC3"
45"44","CZINY_0058_CAATACGCACATAGCT","ILC3"
46"45","CZINY_0049_TTACTGTTCTCATTAC","ILC3"
47"46","CZINY_0064_ACAAGCTTCTGTACAG","ILC3"
48"47","CZINY_0052_AGGAAATTCTGGAGAG","ILC3"
49"48","CZINY_0059_GAAGAATGTTAGGGAC","ILC3"
50"49","CZINY_0053_AACCTGAAGAGTCTTC","ILC3"
51"50","CZI_IA10471910_CZI_IA10472006_TTTATGCGTAGCTAAA","ILC1"
52"51","CZINY_0053_TCGCAGGTCGCGTTTC","ILC3"
53"52","CZINY_0062_GTCCTCAAGGATTTAG","ILC3"
54"53","CZINY_0059_GTGTTCCGTGCTGCAC","ILC3"
55"54","CZINY_0064_CGGGACTGTTAAGGAT","ILC3"
56"55","CZINY_0060_GCACGTGCATGCCGCA","ILC1"
57"56","Pan_T7980370_TCATTTGTCGACGGAA","ILC1"
58"57","CZINY_0060_AGGCATTAGCTGGAGT","ILC3"
59"58","CZINY_0056_TCTTGCGCATGTGACT","ILC3"
60"59","CZINY_0050_CACGTTCGTCGTGATT","ILC3"
61"60","CZINY_0052_TGATCAGAGGACGGAG","ILC3"
62"61","CZINY_0062_TTACAGGAGCCGATAG","ILC3"
63"62","Pan_T7935493_TGACTAGAGTCATGCT","ILC3"
64"63","CZINY_0059_GTACAGTTCGAGCCAC","ILC3"
65"64","CZINY_0056_GAAGTAACATCCGGTG","ILC3"
66"65","CZI_IA10471909_CZI_IA10472005_ACTGCTCTCTACCTGC","ILC3"
67"66","CZINY_0059_CTGTGGGCATAAGCAA","ILC3"
68"67","CZINY_0050_ACGTAACCACAAATGA","ILC3"
69"68","CZINY_0060_ACTGTCCAGCACTTTG","ILC3"
70"69","CZI_IA10471910_CZI_IA10472006_CCGTACTTCTATCGCC","ILC3"
71"70","CZINY_0050_CTTCGGTCAACGGTAG","ILC3"
72"71","CZI_IA10471912_CZI_IA10472008_GATGAAAGTCCATGAT","ILC3"
73"72","CZINY_0060_AAGACTCCAAGTACCT","ILC3"
74"73","CZINY_0062_TGACTCCAGCTTAGTC","ILC3"
75"74","CZINY_0063_TACTTGTAGGTATCTC","ILC3"
76"75","CZINY_0049_TGACTCCTCCACGGGT","ILC3"
77"76","CZINY_0055_TGATTCTGTGTCCGGT","ILC3"
78"77","CZINY_0054_CACTGGGAGAGAGTTT","ILC3"
79"78","CZINY_0057_AGGATCTAGTGATCGG","ILC3"
80"79","CZINY_0055_GGGACTCCAGTTAGGG","ILC3"
81"80","Pan_T7935493_AGGTCATAGTTCGATC","ILC3"
82"81","CZINY_0054_GGGACCTGTTGTGGCC","ILC3"
83"82","CZINY_0064_TGTAAGCGTTATAGCC","ILC3"
84"83","CZINY_0057_ATGCATGAGTGAATAC","ILC3"