Hierarchical annotation of immune cells in scRNA-Seq data based on ssGSEA algorithm. Fork for large datasets with QOL improvements.
byarielm.fyi
1% Generated by roxygen2: do not edit by hand
2% Please edit documentation in R/seurat_maps.R
3\name{seurat_Heatmap}
4\alias{seurat_Heatmap}
5\title{Seurat Object.}
6\usage{
7seurat_Heatmap(count, genematrix, ssGSEA_result, filename)
8}
9\arguments{
10\item{count}{a matrix with cell unique barcodes as column names and gene names as row names .}
11
12\item{genematrix}{a data frame with cell types as column names .}
13
14\item{ssGSEA_result}{a data frame , scImmuCC return result .}
15
16\item{filename}{custom file name， character .}
17}
18\value{
194 pictures.
20}
21\description{
22Creating dynamic Seurat Object to add annotation information and draw images.
23}
24\details{
25Input takes a count, genelist and scImmuCC result, returns tsne, umap, Dotplot and pheatmaps.
26}