Hierarchical annotation of immune cells in scRNA-Seq data based on ssGSEA algorithm. Fork for large datasets with QOL improvements.
byarielm.fyi
1% Generated by roxygen2: do not edit by hand
2% Please edit documentation in R/sc-ImmuCC.R
3\name{scImmuCC_Layered}
4\alias{scImmuCC_Layered}
5\title{scImmuCC_Layered.}
6\usage{
7scImmuCC_Layered(count, Non_Immune = TRUE)
8}
9\arguments{
10\item{count}{a matrix with cell unique barcodes as column names and gene names as row names .}
11
12\item{Non_Immune}{Whether non-immune cells are included in the matrix.}
13}
14\value{
15Data frames with the barcodes and cell types, and some maps.
16}
17\description{
18Creating Hierarchical_annotation for scRNA-Seq data immune cell.
19}
20\details{
21Input takes a cells-genes matrix with cell unique barcodes as column names and gene names as row names and returns the cells annotation.
22}
23\examples{
24test_data
25}