Hierarchical annotation of immune cells in scRNA-Seq data based on ssGSEA algorithm. Fork for large datasets with QOL improvements.
byarielm.fyi
1# Generated by roxygen2: do not edit by hand
2
3export(scImmuCC_Layered)
4import(GSVA)
5import(Matrix)
6import(Seurat)
7import(ggplot2)
8importFrom(GSVA,gsva)
9importFrom(Seurat,CreateSeuratObject)
10importFrom(Seurat,DimPlot)
11importFrom(Seurat,DoHeatmap)
12importFrom(Seurat,DotPlot)
13importFrom(Seurat,FindVariableFeatures)
14importFrom(Seurat,JackStraw)
15importFrom(Seurat,NormalizeData)
16importFrom(Seurat,PercentageFeatureSet)
17importFrom(Seurat,ProjectDim)
18importFrom(Seurat,RunPCA)
19importFrom(Seurat,RunTSNE)
20importFrom(Seurat,RunUMAP)
21importFrom(Seurat,ScaleData)
22importFrom(Seurat,ScoreJackStraw)
23importFrom(Seurat,VariableFeatures)